Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95227.t1 | RHN82715.1 | 79.1 | 211 | 31 | 2 | 2 | 212 | 3 | 200 | 2.10E-80 | 308.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95227.t1 | A0A396K533 | 79.1 | 211 | 31 | 2 | 2 | 212 | 3 | 200 | 1.5e-80 | 308.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053541 | MS.gene95227 | 0.805041 | 1.62E-49 | -1.69E-46 |
| MS.gene053542 | MS.gene95227 | 0.80977 | 1.61E-50 | -1.69E-46 |
| MS.gene057897 | MS.gene95227 | 0.912095 | 2.88E-83 | -1.69E-46 |
| MS.gene058912 | MS.gene95227 | 0.8002 | 1.61E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95227.t1 | MTR_1g115455 | 74.274 | 241 | 29 | 2 | 2 | 242 | 3 | 210 | 3.89e-121 | 344 |
| MS.gene95227.t1 | MTR_8g445860 | 69.167 | 240 | 42 | 4 | 3 | 242 | 8 | 215 | 1.54e-107 | 310 |
| MS.gene95227.t1 | MTR_1g115440 | 56.327 | 245 | 70 | 5 | 2 | 242 | 5 | 216 | 5.60e-82 | 245 |
| MS.gene95227.t1 | MTR_0150s0010 | 59.259 | 243 | 66 | 5 | 2 | 242 | 4 | 215 | 2.19e-81 | 244 |
| MS.gene95227.t1 | MTR_8g044880 | 46.479 | 284 | 79 | 4 | 1 | 242 | 1 | 253 | 4.56e-70 | 216 |
| MS.gene95227.t1 | MTR_8g445910 | 46.182 | 275 | 75 | 4 | 1 | 233 | 1 | 244 | 1.43e-66 | 207 |
| MS.gene95227.t1 | MTR_1g115450 | 76.800 | 125 | 29 | 0 | 3 | 127 | 2 | 126 | 1.05e-63 | 195 |
| MS.gene95227.t1 | MTR_0150s0030 | 43.750 | 224 | 52 | 3 | 1 | 179 | 1 | 195 | 2.82e-47 | 155 |
| MS.gene95227.t1 | MTR_8g445920 | 71.084 | 83 | 24 | 0 | 2 | 84 | 4 | 86 | 5.31e-35 | 121 |
| MS.gene95227.t1 | MTR_8g044890 | 71.084 | 83 | 24 | 0 | 2 | 84 | 4 | 86 | 5.31e-35 | 121 |
| MS.gene95227.t1 | MTR_1g115435 | 34.274 | 248 | 91 | 9 | 3 | 242 | 2 | 185 | 1.66e-32 | 118 |
| MS.gene95227.t1 | MTR_1g115470 | 55.046 | 109 | 46 | 1 | 4 | 112 | 2 | 107 | 3.38e-31 | 119 |
| MS.gene95227.t1 | MTR_1g115470 | 39.850 | 133 | 48 | 4 | 112 | 242 | 181 | 283 | 4.97e-18 | 82.8 |
| MS.gene95227.t1 | MTR_7g012680 | 30.455 | 220 | 109 | 5 | 8 | 222 | 14 | 194 | 2.42e-24 | 100 |
| MS.gene95227.t1 | MTR_8g445870 | 41.935 | 124 | 44 | 4 | 3 | 121 | 2 | 102 | 1.77e-22 | 89.0 |
| MS.gene95227.t1 | MTR_7g066570 | 28.632 | 234 | 122 | 6 | 9 | 236 | 15 | 209 | 4.27e-22 | 95.1 |
| MS.gene95227.t1 | MTR_7g066340 | 27.049 | 244 | 135 | 6 | 2 | 240 | 6 | 211 | 1.11e-21 | 93.6 |
| MS.gene95227.t1 | MTR_7g058710 | 29.435 | 248 | 128 | 10 | 1 | 243 | 1 | 206 | 1.62e-20 | 90.1 |
| MS.gene95227.t1 | MTR_1g014060 | 29.060 | 234 | 116 | 9 | 18 | 243 | 10 | 201 | 3.60e-19 | 85.9 |
| MS.gene95227.t1 | MTR_7g066260 | 25.103 | 243 | 137 | 6 | 8 | 243 | 15 | 219 | 9.73e-19 | 85.1 |
| MS.gene95227.t1 | MTR_4g019310 | 29.183 | 257 | 134 | 9 | 1 | 243 | 1 | 223 | 5.17e-18 | 83.2 |
| MS.gene95227.t1 | MTR_7g066290 | 25.311 | 241 | 139 | 7 | 8 | 243 | 15 | 219 | 5.36e-18 | 82.8 |
| MS.gene95227.t1 | MTR_1g041315 | 27.686 | 242 | 129 | 8 | 8 | 242 | 14 | 216 | 1.48e-17 | 81.6 |
| MS.gene95227.t1 | MTR_7g066350 | 27.801 | 241 | 131 | 7 | 8 | 243 | 9 | 211 | 1.81e-17 | 81.3 |
| MS.gene95227.t1 | MTR_7g063900 | 26.693 | 251 | 135 | 9 | 1 | 243 | 1 | 210 | 2.44e-17 | 80.9 |
| MS.gene95227.t1 | MTR_7g063890 | 25.726 | 241 | 133 | 7 | 8 | 243 | 27 | 226 | 5.93e-17 | 80.1 |
| MS.gene95227.t1 | MTR_7g063880 | 27.888 | 251 | 127 | 9 | 2 | 243 | 5 | 210 | 1.36e-16 | 79.0 |
| MS.gene95227.t1 | MTR_7g063840 | 28.571 | 245 | 118 | 10 | 9 | 243 | 11 | 208 | 2.76e-16 | 77.8 |
| MS.gene95227.t1 | MTR_4g017830 | 28.745 | 247 | 125 | 10 | 9 | 243 | 13 | 220 | 3.56e-16 | 77.8 |
| MS.gene95227.t1 | MTR_4g017830 | 28.346 | 254 | 131 | 10 | 4 | 243 | 263 | 479 | 8.32e-16 | 76.6 |
| MS.gene95227.t1 | MTR_7g062280 | 31.405 | 242 | 133 | 10 | 8 | 243 | 10 | 224 | 3.77e-16 | 77.4 |
| MS.gene95227.t1 | MTR_4g017410 | 26.538 | 260 | 139 | 9 | 1 | 243 | 1 | 225 | 7.24e-16 | 76.6 |
| MS.gene95227.t1 | MTR_7g063660 | 27.530 | 247 | 130 | 8 | 3 | 243 | 4 | 207 | 8.11e-16 | 76.6 |
| MS.gene95227.t1 | MTR_4g019340 | 26.772 | 254 | 131 | 8 | 9 | 243 | 39 | 256 | 8.99e-16 | 76.6 |
| MS.gene95227.t1 | MTR_4g019340 | 39.241 | 79 | 46 | 1 | 8 | 86 | 303 | 379 | 2.95e-12 | 66.2 |
| MS.gene95227.t1 | MTR_7g066430 | 27.143 | 210 | 112 | 6 | 6 | 210 | 2 | 175 | 1.72e-15 | 75.5 |
| MS.gene95227.t1 | MTR_4g017610 | 27.935 | 247 | 125 | 9 | 11 | 243 | 16 | 223 | 1.76e-15 | 75.5 |
| MS.gene95227.t1 | MTR_2g029400 | 38.824 | 85 | 47 | 1 | 8 | 87 | 14 | 98 | 1.60e-14 | 72.4 |
| MS.gene95227.t1 | MTR_7g063820 | 30.263 | 228 | 112 | 11 | 3 | 221 | 2 | 191 | 2.21e-14 | 72.4 |
| MS.gene95227.t1 | MTR_4g017470 | 41.667 | 84 | 47 | 1 | 3 | 86 | 229 | 310 | 2.52e-14 | 72.0 |
| MS.gene95227.t1 | MTR_4g017470 | 32.110 | 109 | 59 | 1 | 6 | 99 | 10 | 118 | 4.94e-11 | 62.4 |
| MS.gene95227.t1 | MTR_7g062300 | 27.016 | 248 | 136 | 9 | 2 | 243 | 6 | 214 | 5.08e-14 | 71.2 |
| MS.gene95227.t1 | MTR_7g066360 | 23.077 | 247 | 146 | 6 | 2 | 243 | 8 | 215 | 1.30e-13 | 70.1 |
| MS.gene95227.t1 | MTR_7g066410 | 26.721 | 247 | 140 | 9 | 2 | 242 | 278 | 489 | 1.76e-13 | 69.7 |
| MS.gene95227.t1 | MTR_7g066410 | 28.365 | 208 | 110 | 9 | 8 | 210 | 10 | 183 | 2.84e-13 | 68.9 |
| MS.gene95227.t1 | MTR_4g017550 | 28.440 | 218 | 125 | 8 | 4 | 220 | 243 | 430 | 2.11e-13 | 69.3 |
| MS.gene95227.t1 | MTR_4g017440 | 24.231 | 260 | 138 | 8 | 2 | 243 | 8 | 226 | 3.98e-13 | 68.6 |
| MS.gene95227.t1 | MTR_4g017440 | 27.917 | 240 | 144 | 8 | 3 | 242 | 269 | 479 | 1.35e-12 | 67.0 |
| MS.gene95227.t1 | MTR_7g066310 | 33.333 | 117 | 65 | 3 | 8 | 117 | 7 | 117 | 8.66e-13 | 67.4 |
| MS.gene95227.t1 | MTR_3g007740 | 26.531 | 245 | 112 | 8 | 8 | 238 | 9 | 199 | 1.07e-12 | 67.4 |
| MS.gene95227.t1 | MTR_7g066580 | 32.743 | 113 | 64 | 4 | 14 | 120 | 1 | 107 | 1.62e-12 | 66.6 |
| MS.gene95227.t1 | MTR_7g063830 | 32.450 | 151 | 85 | 6 | 1 | 138 | 1 | 147 | 2.81e-12 | 66.2 |
| MS.gene95227.t1 | MTR_7g066490 | 40.909 | 88 | 47 | 1 | 4 | 86 | 12 | 99 | 4.54e-12 | 65.5 |
| MS.gene95227.t1 | MTR_7g066480 | 27.642 | 246 | 121 | 10 | 8 | 243 | 16 | 214 | 5.45e-12 | 65.1 |
| MS.gene95227.t1 | MTR_7g063920 | 37.778 | 90 | 51 | 1 | 2 | 86 | 5 | 94 | 2.96e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95227.t1 | AT3G09110 | 28.112 | 249 | 119 | 6 | 8 | 243 | 9 | 210 | 5.31e-20 | 87.8 |
| MS.gene95227.t1 | AT5G01130 | 28.340 | 247 | 126 | 6 | 3 | 243 | 4 | 205 | 1.90e-18 | 84.3 |
| MS.gene95227.t1 | AT5G01120 | 25.911 | 247 | 132 | 7 | 9 | 243 | 10 | 217 | 8.94e-18 | 82.4 |
| MS.gene95227.t1 | AT3G09140 | 26.295 | 251 | 149 | 6 | 3 | 243 | 4 | 228 | 7.55e-17 | 79.7 |
| MS.gene95227.t1 | AT3G09140 | 26.295 | 251 | 149 | 6 | 3 | 243 | 4 | 228 | 7.74e-17 | 79.7 |
| MS.gene95227.t1 | AT5G43240 | 26.613 | 248 | 132 | 8 | 9 | 243 | 10 | 220 | 3.90e-16 | 77.4 |
| MS.gene95227.t1 | AT5G43240 | 26.613 | 248 | 132 | 8 | 9 | 243 | 10 | 220 | 3.90e-16 | 77.4 |
| MS.gene95227.t1 | AT5G43240 | 26.613 | 248 | 132 | 8 | 9 | 243 | 10 | 220 | 3.90e-16 | 77.4 |
| MS.gene95227.t1 | AT5G01150 | 26.016 | 246 | 141 | 5 | 3 | 243 | 4 | 213 | 1.76e-14 | 72.8 |
| MS.gene95227.t1 | AT3G09120 | 25.820 | 244 | 145 | 6 | 4 | 243 | 2 | 213 | 1.07e-11 | 63.9 |
Find 55 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGATGTTATCACATTTA+TGG | 0.180834 | 3.2:+14102912 | MS.gene95227:CDS |
| GACCGTGGTTCTCTTCCTTT+TGG | 0.187396 | 3.2:+14102748 | MS.gene95227:CDS |
| CATCATCAATGTCTTCATTC+TGG | 0.201655 | 3.2:-14102630 | None:intergenic |
| TTTGGGGCTAGTCCTGCTTT+TGG | 0.253034 | 3.2:+14102784 | MS.gene95227:CDS |
| TTTGGGGCTAGTCCTGCTTT+TGG | 0.267199 | 3.2:+14102766 | MS.gene95227:CDS |
| AATGGAATGGTTGGTAGTTT+AGG | 0.275746 | 3.2:+14102487 | MS.gene95227:CDS |
| GTGGAAGAGCTTTGAGCTCT+TGG | 0.285273 | 3.2:-14102586 | None:intergenic |
| CACAAACCCACTCTTAATAT+CGG | 0.339765 | 3.2:-14102890 | None:intergenic |
| AAGTTCGTTATGTCGGAAAA+AGG | 0.346729 | 3.2:+14102845 | MS.gene95227:CDS |
| ATTTATGGTGATGGATGATT+TGG | 0.351782 | 3.2:+14102927 | MS.gene95227:CDS |
| AGGACATCCTTAGTTTGGTT+TGG | 0.370323 | 3.2:-14102556 | None:intergenic |
| CAACAGTGTGATGCTTGATA+TGG | 0.370669 | 3.2:-14102968 | None:intergenic |
| TTAGCAGGACATCCTTAGTT+TGG | 0.377274 | 3.2:-14102561 | None:intergenic |
| TGGAAGAGCTTTGAGCTCTT+GGG | 0.383995 | 3.2:-14102585 | None:intergenic |
| ATCATCAATGTCTTCATTCT+GGG | 0.389042 | 3.2:-14102629 | None:intergenic |
| ATAGTCTTCGAGCAGTATAC+TGG | 0.410060 | 3.2:-14102814 | None:intergenic |
| CAACCATTCCATTTGTGCTT+AGG | 0.411279 | 3.2:-14102477 | None:intergenic |
| AGGAAGAGAACCACGGTCAT+TGG | 0.418470 | 3.2:-14102743 | None:intergenic |
| TTTGAGCTCTTGGGTTTAGC+AGG | 0.423021 | 3.2:-14102576 | None:intergenic |
| GATTGAAACCTTGCAAGAAA+AGG | 0.450000 | 3.2:+14103011 | MS.gene95227:CDS |
| AGCTTAACCACGGTGCCAAT+TGG | 0.456102 | 3.2:-14102454 | None:intergenic |
| CAAGAAAAGGTTGTTGAGAT+GGG | 0.463384 | 3.2:+14103024 | MS.gene95227:CDS |
| AGCTCTTCCACTGAAATCTC+AGG | 0.471238 | 3.2:+14102598 | MS.gene95227:CDS |
| GTTAAGCTCCTAAGCACAAA+TGG | 0.472625 | 3.2:+14102469 | MS.gene95227:CDS |
| GCAAGAAAAGGTTGTTGAGA+TGG | 0.482167 | 3.2:+14103023 | MS.gene95227:CDS |
| CAATGTCTTCATTCTGGGTA+AGG | 0.483882 | 3.2:-14102624 | None:intergenic |
| ACCACGGTCATTGGCAGACC+TGG | 0.490771 | 3.2:-14102734 | None:intergenic |
| AATTTGCTATGCTTGCCAAT+TGG | 0.494602 | 3.2:+14102439 | MS.gene95227:CDS |
| AAGAAGTTTCAGTGACACTT+TGG | 0.494769 | 3.2:-14102350 | None:intergenic |
| ACCTCAAAGTCACACTTACC+TGG | 0.508917 | 3.2:-14102682 | None:intergenic |
| AACAGTGAAGTTCGTTATGT+CGG | 0.513095 | 3.2:+14102838 | MS.gene95227:CDS |
| TGTTATCACATTTATGGTGA+TGG | 0.515514 | 3.2:+14102918 | MS.gene95227:CDS |
| GGTTTGGTTGCATGTAACTC+TGG | 0.520873 | 3.2:-14102540 | None:intergenic |
| TCCAGGTAAGTGTGACTTTG+AGG | 0.521666 | 3.2:+14102681 | MS.gene95227:CDS |
| AAAGCAGGACTAGCCCCAAA+AGG | 0.523257 | 3.2:-14102763 | None:intergenic |
| GCAGGACTAGCCCCAAAAGC+AGG | 0.523795 | 3.2:-14102778 | None:intergenic |
| CATGCAACCAAACCAAACTA+AGG | 0.523850 | 3.2:+14102549 | MS.gene95227:CDS |
| CTAAGCACAAATGGAATGGT+TGG | 0.538348 | 3.2:+14102478 | MS.gene95227:CDS |
| ACACCACTCGTTGTACTGCC+AGG | 0.539159 | 3.2:+14102716 | MS.gene95227:CDS |
| AGAGTTTCCGATATTAAGAG+TGG | 0.573501 | 3.2:+14102883 | MS.gene95227:CDS |
| AAGTTTCAGTGACACTTTGG+TGG | 0.576601 | 3.2:-14102347 | None:intergenic |
| GCTCCTAAGCACAAATGGAA+TGG | 0.578156 | 3.2:+14102474 | MS.gene95227:CDS |
| ATGCTTGATATGGTTGACAT+TGG | 0.584309 | 3.2:-14102958 | None:intergenic |
| ACTGGACTAGCCCCAAAAGC+AGG | 0.584508 | 3.2:-14102796 | None:intergenic |
| GACATTGATGATGAAGATGA+AGG | 0.587367 | 3.2:+14102640 | MS.gene95227:CDS |
| TGTTGAGATGGGAATGGATG+AGG | 0.588340 | 3.2:+14103035 | MS.gene95227:CDS |
| ACTAAGTTATACATGTGTCC+AGG | 0.594908 | 3.2:+14102664 | MS.gene95227:CDS |
| GAGTTTCCGATATTAAGAGT+GGG | 0.614629 | 3.2:+14102884 | MS.gene95227:CDS |
| AAAGGTTGTTGAGATGGGAA+TGG | 0.615414 | 3.2:+14103029 | MS.gene95227:CDS |
| GCCAGGTCTGCCAATGACCG+TGG | 0.633912 | 3.2:+14102733 | MS.gene95227:CDS |
| AAGGAAGCCTGAGATTTCAG+TGG | 0.655993 | 3.2:-14102605 | None:intergenic |
| TGTGCTTAGGAGCTTAACCA+CGG | 0.668356 | 3.2:-14102464 | None:intergenic |
| ATGCTTGCCAATTGGCACCG+TGG | 0.701156 | 3.2:+14102447 | MS.gene95227:CDS |
| AGACCTGGCAGTACAACGAG+TGG | 0.704338 | 3.2:-14102719 | None:intergenic |
| CCCCAAAAGGAAGAGAACCA+CGG | 0.716251 | 3.2:-14102750 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GAAAGATGTTATCACATTTA+TGG | + | chr3.2:14102912-14102931 | MS.gene95227:CDS | 25.0% |
| ATCATCAATGTCTTCATTCT+GGG | - | chr3.2:14102632-14102651 | None:intergenic | 30.0% | |
| TGTTATCACATTTATGGTGA+TGG | + | chr3.2:14102918-14102937 | MS.gene95227:CDS | 30.0% | |
| !! | ATTTATGGTGATGGATGATT+TGG | + | chr3.2:14102927-14102946 | MS.gene95227:CDS | 30.0% |
| AACAGTGAAGTTCGTTATGT+CGG | + | chr3.2:14102838-14102857 | MS.gene95227:CDS | 35.0% | |
| AAGAAGTTTCAGTGACACTT+TGG | - | chr3.2:14102353-14102372 | None:intergenic | 35.0% | |
| AAGTTCGTTATGTCGGAAAA+AGG | + | chr3.2:14102845-14102864 | MS.gene95227:CDS | 35.0% | |
| ACTAAGTTATACATGTGTCC+AGG | + | chr3.2:14102664-14102683 | MS.gene95227:CDS | 35.0% | |
| AGAGTTTCCGATATTAAGAG+TGG | + | chr3.2:14102883-14102902 | MS.gene95227:CDS | 35.0% | |
| ATGCTTGATATGGTTGACAT+TGG | - | chr3.2:14102961-14102980 | None:intergenic | 35.0% | |
| CAAGAAAAGGTTGTTGAGAT+GGG | + | chr3.2:14103024-14103043 | MS.gene95227:CDS | 35.0% | |
| CACAAACCCACTCTTAATAT+CGG | - | chr3.2:14102893-14102912 | None:intergenic | 35.0% | |
| CATCATCAATGTCTTCATTC+TGG | - | chr3.2:14102633-14102652 | None:intergenic | 35.0% | |
| GAGTTTCCGATATTAAGAGT+GGG | + | chr3.2:14102884-14102903 | MS.gene95227:CDS | 35.0% | |
| GATTGAAACCTTGCAAGAAA+AGG | + | chr3.2:14103011-14103030 | MS.gene95227:CDS | 35.0% | |
| !! | AATGGAATGGTTGGTAGTTT+AGG | + | chr3.2:14102487-14102506 | MS.gene95227:CDS | 35.0% |
| !! | AATTTGCTATGCTTGCCAAT+TGG | + | chr3.2:14102439-14102458 | MS.gene95227:CDS | 35.0% |
| !! | GACATTGATGATGAAGATGA+AGG | + | chr3.2:14102640-14102659 | MS.gene95227:CDS | 35.0% |
| AAAGGTTGTTGAGATGGGAA+TGG | + | chr3.2:14103029-14103048 | MS.gene95227:CDS | 40.0% | |
| AAGTTTCAGTGACACTTTGG+TGG | - | chr3.2:14102350-14102369 | None:intergenic | 40.0% | |
| ATAGTCTTCGAGCAGTATAC+TGG | - | chr3.2:14102817-14102836 | None:intergenic | 40.0% | |
| CAACAGTGTGATGCTTGATA+TGG | - | chr3.2:14102971-14102990 | None:intergenic | 40.0% | |
| CAACCATTCCATTTGTGCTT+AGG | - | chr3.2:14102480-14102499 | None:intergenic | 40.0% | |
| CAATGTCTTCATTCTGGGTA+AGG | - | chr3.2:14102627-14102646 | None:intergenic | 40.0% | |
| CATGCAACCAAACCAAACTA+AGG | + | chr3.2:14102549-14102568 | MS.gene95227:CDS | 40.0% | |
| CTAAGCACAAATGGAATGGT+TGG | + | chr3.2:14102478-14102497 | MS.gene95227:CDS | 40.0% | |
| GCAAGAAAAGGTTGTTGAGA+TGG | + | chr3.2:14103023-14103042 | MS.gene95227:CDS | 40.0% | |
| GTTAAGCTCCTAAGCACAAA+TGG | + | chr3.2:14102469-14102488 | MS.gene95227:CDS | 40.0% | |
| TCGTTATGTCGGAAAAAGGA+AGG | + | chr3.2:14102849-14102868 | MS.gene95227:CDS | 40.0% | |
| TTAGCAGGACATCCTTAGTT+TGG | - | chr3.2:14102564-14102583 | None:intergenic | 40.0% | |
| ! | AGGACATCCTTAGTTTGGTT+TGG | - | chr3.2:14102559-14102578 | None:intergenic | 40.0% |
| ! | CTCAACAACCTTTTCTTGCA+AGG | - | chr3.2:14103022-14103041 | None:intergenic | 40.0% |
| AAGGAAGCCTGAGATTTCAG+TGG | - | chr3.2:14102608-14102627 | None:intergenic | 45.0% | |
| ACCTCAAAGTCACACTTACC+TGG | - | chr3.2:14102685-14102704 | None:intergenic | 45.0% | |
| AGCTCTTCCACTGAAATCTC+AGG | + | chr3.2:14102598-14102617 | MS.gene95227:CDS | 45.0% | |
| GCTCCTAAGCACAAATGGAA+TGG | + | chr3.2:14102474-14102493 | MS.gene95227:CDS | 45.0% | |
| TCCAGGTAAGTGTGACTTTG+AGG | + | chr3.2:14102681-14102700 | MS.gene95227:CDS | 45.0% | |
| TGTGCTTAGGAGCTTAACCA+CGG | - | chr3.2:14102467-14102486 | None:intergenic | 45.0% | |
| TGTTGAGATGGGAATGGATG+AGG | + | chr3.2:14103035-14103054 | MS.gene95227:CDS | 45.0% | |
| TTTGAGCTCTTGGGTTTAGC+AGG | - | chr3.2:14102579-14102598 | None:intergenic | 45.0% | |
| ! | ACCGTGGTTCTCTTCCTTTT+GGG | + | chr3.2:14102749-14102768 | MS.gene95227:CDS | 45.0% |
| ! | GGTTTGGTTGCATGTAACTC+TGG | - | chr3.2:14102543-14102562 | None:intergenic | 45.0% |
| !! | TGGAAGAGCTTTGAGCTCTT+GGG | - | chr3.2:14102588-14102607 | None:intergenic | 45.0% |
| AGGAAGAGAACCACGGTCAT+TGG | - | chr3.2:14102746-14102765 | None:intergenic | 50.0% | |
| CCCCAAAAGGAAGAGAACCA+CGG | - | chr3.2:14102753-14102772 | None:intergenic | 50.0% | |
| ! | AGCTTAACCACGGTGCCAAT+TGG | - | chr3.2:14102457-14102476 | None:intergenic | 50.0% |
| ! | CCGTGGTTCTCTTCCTTTTG+GGG | + | chr3.2:14102750-14102769 | MS.gene95227:CDS | 50.0% |
| ! | GACCGTGGTTCTCTTCCTTT+TGG | + | chr3.2:14102748-14102767 | MS.gene95227:CDS | 50.0% |
| !! | AAAGCAGGACTAGCCCCAAA+AGG | - | chr3.2:14102766-14102785 | None:intergenic | 50.0% |
| !! | GTGGAAGAGCTTTGAGCTCT+TGG | - | chr3.2:14102589-14102608 | None:intergenic | 50.0% |
| !!! | TTGGGGCTAGTCCTGCTTTT+GGG | + | chr3.2:14102767-14102786 | MS.gene95227:CDS | 50.0% |
| !!! | TTTGGGGCTAGTCCTGCTTT+TGG | + | chr3.2:14102766-14102785 | MS.gene95227:CDS | 50.0% |
| ACACCACTCGTTGTACTGCC+AGG | + | chr3.2:14102716-14102735 | MS.gene95227:CDS | 55.0% | |
| AGACCTGGCAGTACAACGAG+TGG | - | chr3.2:14102722-14102741 | None:intergenic | 55.0% | |
| ATGCTTGCCAATTGGCACCG+TGG | + | chr3.2:14102447-14102466 | MS.gene95227:CDS | 55.0% | |
| !! | ACTGGACTAGCCCCAAAAGC+AGG | - | chr3.2:14102799-14102818 | None:intergenic | 55.0% |
| !!! | TGGGGCTAGTCCTGCTTTTG+GGG | + | chr3.2:14102768-14102787 | MS.gene95227:CDS | 55.0% |
| ACCACGGTCATTGGCAGACC+TGG | - | chr3.2:14102737-14102756 | None:intergenic | 60.0% | |
| !! | GCAGGACTAGCCCCAAAAGC+AGG | - | chr3.2:14102781-14102800 | None:intergenic | 60.0% |
| GCCAGGTCTGCCAATGACCG+TGG | + | chr3.2:14102733-14102752 | MS.gene95227:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 14102331 | 14103065 | 14102331 | ID=MS.gene95227 |
| chr3.2 | mRNA | 14102331 | 14103065 | 14102331 | ID=MS.gene95227.t1;Parent=MS.gene95227 |
| chr3.2 | exon | 14102331 | 14103065 | 14102331 | ID=MS.gene95227.t1.exon1;Parent=MS.gene95227.t1 |
| chr3.2 | CDS | 14102331 | 14103065 | 14102331 | ID=cds.MS.gene95227.t1;Parent=MS.gene95227.t1 |
| Gene Sequence |
| Protein sequence |
