Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057897.t1 | KEH44492.1 | 71.6 | 275 | 35 | 3 | 2 | 276 | 3 | 234 | 3.90E-91 | 344.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057897.t1 | A0A072VRU1 | 71.6 | 275 | 35 | 3 | 2 | 276 | 3 | 234 | 2.8e-91 | 344.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057897 | MS.gene53003 | 0.803674 | 3.11E-49 | -1.69E-46 |
| MS.gene057897 | MS.gene79453 | 0.940298 | 2.96E-100 | -1.69E-46 |
| MS.gene057897 | MS.gene80032 | 0.915247 | 7.38E-85 | -1.69E-46 |
| MS.gene057897 | MS.gene95227 | 0.912095 | 2.88E-83 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057897.t1 | MTR_1g115455 | 73.818 | 275 | 29 | 2 | 2 | 276 | 3 | 234 | 2.77e-137 | 387 |
| MS.gene057897.t1 | MTR_8g445860 | 68.248 | 274 | 45 | 4 | 3 | 276 | 8 | 239 | 6.56e-121 | 345 |
| MS.gene057897.t1 | MTR_1g115440 | 57.040 | 277 | 74 | 6 | 2 | 275 | 5 | 239 | 3.14e-94 | 278 |
| MS.gene057897.t1 | MTR_0150s0010 | 59.058 | 276 | 70 | 5 | 2 | 275 | 4 | 238 | 1.15e-93 | 276 |
| MS.gene057897.t1 | MTR_8g044880 | 48.589 | 319 | 79 | 6 | 1 | 275 | 1 | 278 | 5.80e-81 | 245 |
| MS.gene057897.t1 | MTR_8g445910 | 47.319 | 317 | 76 | 6 | 1 | 275 | 1 | 268 | 2.72e-76 | 233 |
| MS.gene057897.t1 | MTR_1g115450 | 76.800 | 125 | 29 | 0 | 3 | 127 | 2 | 126 | 2.93e-63 | 195 |
| MS.gene057897.t1 | MTR_0150s0030 | 49.721 | 179 | 45 | 2 | 1 | 134 | 1 | 179 | 1.17e-45 | 153 |
| MS.gene057897.t1 | MTR_1g115435 | 35.106 | 282 | 101 | 9 | 3 | 276 | 2 | 209 | 3.43e-41 | 142 |
| MS.gene057897.t1 | MTR_8g445920 | 73.750 | 80 | 21 | 0 | 2 | 81 | 4 | 83 | 9.56e-35 | 121 |
| MS.gene057897.t1 | MTR_8g044890 | 73.750 | 80 | 21 | 0 | 2 | 81 | 4 | 83 | 9.56e-35 | 121 |
| MS.gene057897.t1 | MTR_1g115470 | 55.046 | 109 | 46 | 1 | 4 | 112 | 2 | 107 | 6.05e-31 | 120 |
| MS.gene057897.t1 | MTR_1g115470 | 35.329 | 167 | 64 | 5 | 112 | 276 | 181 | 305 | 5.19e-18 | 83.6 |
| MS.gene057897.t1 | MTR_7g012680 | 29.137 | 278 | 123 | 6 | 2 | 274 | 8 | 216 | 1.96e-25 | 104 |
| MS.gene057897.t1 | MTR_7g066570 | 29.044 | 272 | 131 | 7 | 9 | 274 | 15 | 230 | 9.85e-25 | 103 |
| MS.gene057897.t1 | MTR_7g066570 | 27.574 | 272 | 147 | 7 | 1 | 269 | 250 | 474 | 1.01e-18 | 85.9 |
| MS.gene057897.t1 | MTR_7g066340 | 28.014 | 282 | 148 | 7 | 2 | 276 | 6 | 239 | 2.08e-24 | 102 |
| MS.gene057897.t1 | MTR_7g058710 | 29.643 | 280 | 140 | 10 | 1 | 275 | 1 | 228 | 1.13e-23 | 100 |
| MS.gene057897.t1 | MTR_7g066260 | 26.182 | 275 | 148 | 6 | 8 | 275 | 15 | 241 | 5.01e-23 | 98.2 |
| MS.gene057897.t1 | MTR_8g445870 | 41.935 | 124 | 44 | 4 | 3 | 121 | 2 | 102 | 2.59e-22 | 89.0 |
| MS.gene057897.t1 | MTR_4g019310 | 30.104 | 289 | 144 | 9 | 1 | 275 | 1 | 245 | 5.99e-22 | 95.1 |
| MS.gene057897.t1 | MTR_7g062280 | 31.752 | 274 | 144 | 10 | 8 | 275 | 10 | 246 | 1.37e-21 | 94.4 |
| MS.gene057897.t1 | MTR_7g063900 | 27.208 | 283 | 147 | 9 | 1 | 275 | 1 | 232 | 1.41e-21 | 94.4 |
| MS.gene057897.t1 | MTR_7g063890 | 26.740 | 273 | 144 | 7 | 8 | 275 | 27 | 248 | 2.33e-21 | 93.6 |
| MS.gene057897.t1 | MTR_7g063880 | 28.826 | 281 | 136 | 10 | 2 | 273 | 5 | 230 | 6.81e-21 | 92.0 |
| MS.gene057897.t1 | MTR_7g063840 | 29.242 | 277 | 129 | 10 | 9 | 275 | 11 | 230 | 2.56e-20 | 90.5 |
| MS.gene057897.t1 | MTR_7g066350 | 28.205 | 273 | 143 | 7 | 8 | 275 | 9 | 233 | 3.91e-20 | 89.7 |
| MS.gene057897.t1 | MTR_7g063660 | 28.777 | 278 | 139 | 8 | 3 | 274 | 4 | 228 | 1.20e-19 | 88.6 |
| MS.gene057897.t1 | MTR_1g014060 | 28.175 | 252 | 121 | 9 | 18 | 261 | 10 | 209 | 2.53e-19 | 87.0 |
| MS.gene057897.t1 | MTR_1g041315 | 27.622 | 286 | 141 | 9 | 8 | 276 | 14 | 250 | 4.09e-19 | 87.0 |
| MS.gene057897.t1 | MTR_4g019340 | 28.269 | 283 | 140 | 8 | 9 | 273 | 39 | 276 | 7.92e-19 | 86.3 |
| MS.gene057897.t1 | MTR_4g019340 | 39.241 | 79 | 46 | 1 | 8 | 86 | 303 | 379 | 5.09e-12 | 66.2 |
| MS.gene057897.t1 | MTR_7g062300 | 27.143 | 280 | 149 | 8 | 2 | 275 | 6 | 236 | 1.42e-18 | 85.5 |
| MS.gene057897.t1 | MTR_4g017830 | 28.159 | 277 | 138 | 10 | 9 | 273 | 13 | 240 | 3.78e-18 | 84.3 |
| MS.gene057897.t1 | MTR_4g017830 | 42.169 | 83 | 46 | 1 | 4 | 86 | 263 | 343 | 1.65e-13 | 70.5 |
| MS.gene057897.t1 | MTR_4g017410 | 25.862 | 290 | 151 | 9 | 1 | 272 | 1 | 244 | 8.33e-18 | 83.2 |
| MS.gene057897.t1 | MTR_7g066430 | 26.545 | 275 | 150 | 7 | 7 | 275 | 3 | 231 | 1.28e-17 | 82.8 |
| MS.gene057897.t1 | MTR_4g017610 | 27.437 | 277 | 138 | 9 | 11 | 273 | 16 | 243 | 1.53e-16 | 79.3 |
| MS.gene057897.t1 | MTR_7g066410 | 27.758 | 281 | 151 | 10 | 2 | 274 | 278 | 514 | 1.90e-16 | 79.3 |
| MS.gene057897.t1 | MTR_7g066410 | 26.298 | 289 | 147 | 12 | 8 | 274 | 10 | 254 | 3.31e-14 | 72.8 |
| MS.gene057897.t1 | MTR_3g007740 | 26.642 | 274 | 131 | 7 | 8 | 275 | 9 | 218 | 2.31e-16 | 79.0 |
| MS.gene057897.t1 | MTR_7g063820 | 29.078 | 282 | 141 | 12 | 4 | 275 | 2 | 234 | 2.38e-16 | 79.0 |
| MS.gene057897.t1 | MTR_7g066290 | 24.000 | 250 | 139 | 6 | 8 | 252 | 15 | 218 | 4.16e-16 | 78.2 |
| MS.gene057897.t1 | MTR_7g066280 | 25.856 | 263 | 166 | 6 | 8 | 269 | 150 | 384 | 5.06e-16 | 77.8 |
| MS.gene057897.t1 | MTR_4g017440 | 24.483 | 290 | 150 | 8 | 2 | 273 | 8 | 246 | 1.96e-15 | 76.3 |
| MS.gene057897.t1 | MTR_4g017440 | 26.966 | 267 | 156 | 8 | 3 | 269 | 269 | 496 | 1.38e-12 | 67.8 |
| MS.gene057897.t1 | MTR_4g017550 | 26.966 | 267 | 152 | 9 | 4 | 269 | 243 | 467 | 2.31e-15 | 75.9 |
| MS.gene057897.t1 | MTR_2g029400 | 38.824 | 85 | 47 | 1 | 8 | 87 | 14 | 98 | 2.89e-14 | 72.4 |
| MS.gene057897.t1 | MTR_4g017470 | 41.667 | 84 | 47 | 1 | 3 | 86 | 229 | 310 | 4.06e-14 | 72.4 |
| MS.gene057897.t1 | MTR_4g017470 | 32.110 | 109 | 59 | 1 | 6 | 99 | 10 | 118 | 5.79e-11 | 62.8 |
| MS.gene057897.t1 | MTR_7g063830 | 26.923 | 286 | 138 | 10 | 1 | 272 | 1 | 229 | 4.12e-14 | 72.0 |
| MS.gene057897.t1 | MTR_7g066360 | 23.571 | 280 | 160 | 5 | 2 | 276 | 8 | 238 | 1.03e-12 | 68.2 |
| MS.gene057897.t1 | MTR_7g066310 | 33.333 | 117 | 65 | 3 | 8 | 117 | 7 | 117 | 1.26e-12 | 67.8 |
| MS.gene057897.t1 | MTR_7g066580 | 32.743 | 113 | 64 | 4 | 14 | 120 | 1 | 107 | 2.83e-12 | 66.6 |
| MS.gene057897.t1 | MTR_7g066490 | 31.188 | 202 | 123 | 8 | 4 | 199 | 12 | 203 | 6.51e-12 | 65.5 |
| MS.gene057897.t1 | MTR_7g066480 | 30.688 | 189 | 113 | 8 | 8 | 187 | 16 | 195 | 2.21e-11 | 63.9 |
| MS.gene057897.t1 | MTR_7g063920 | 37.778 | 90 | 51 | 1 | 2 | 86 | 5 | 94 | 4.23e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057897.t1 | AT3G09110 | 27.758 | 281 | 133 | 7 | 8 | 275 | 9 | 232 | 1.31e-21 | 93.2 |
| MS.gene057897.t1 | AT5G01130 | 27.599 | 279 | 141 | 6 | 3 | 275 | 4 | 227 | 6.25e-21 | 92.0 |
| MS.gene057897.t1 | AT3G09140 | 26.056 | 284 | 164 | 6 | 3 | 276 | 4 | 251 | 8.84e-20 | 89.0 |
| MS.gene057897.t1 | AT5G01120 | 25.714 | 280 | 147 | 7 | 9 | 276 | 10 | 240 | 2.26e-18 | 85.1 |
| MS.gene057897.t1 | AT5G43240 | 26.335 | 281 | 147 | 8 | 9 | 276 | 10 | 243 | 1.08e-16 | 80.1 |
| MS.gene057897.t1 | AT5G43240 | 26.335 | 281 | 147 | 8 | 9 | 276 | 10 | 243 | 1.08e-16 | 80.1 |
| MS.gene057897.t1 | AT5G43240 | 26.335 | 281 | 147 | 8 | 9 | 276 | 10 | 243 | 1.08e-16 | 80.1 |
| MS.gene057897.t1 | AT5G01150 | 24.113 | 282 | 155 | 5 | 3 | 275 | 4 | 235 | 1.61e-15 | 76.6 |
| MS.gene057897.t1 | AT3G09140 | 34.532 | 139 | 78 | 4 | 3 | 133 | 4 | 137 | 1.88e-15 | 76.3 |
| MS.gene057897.t1 | AT3G09120 | 25.725 | 276 | 159 | 6 | 4 | 275 | 2 | 235 | 3.28e-13 | 68.9 |
Find 60 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGATGTTATCACATTTA+TGG | 0.180834 | 3.3:+15668380 | MS.gene057897:CDS |
| GACCGTGGTTCTCTTCCTTT+TGG | 0.187396 | 3.3:+15668186 | MS.gene057897:CDS |
| CATCATCAATGTCTTCATTC+TGG | 0.201655 | 3.3:-15668068 | None:intergenic |
| TTTGGGGCTAGTCCTGCTTT+TGG | 0.253034 | 3.3:+15668222 | MS.gene057897:CDS |
| TTTGGGGCTAGTCCTGCTTT+TGG | 0.253034 | 3.3:+15668252 | MS.gene057897:CDS |
| TTTGGGGCTAGTCCTGCTTT+TGG | 0.267199 | 3.3:+15668204 | MS.gene057897:CDS |
| AATGGAATGGTTGGTAGTTT+AGG | 0.275746 | 3.3:+15667925 | MS.gene057897:CDS |
| GTGGAAGAGCTTTGAGCTCT+TGG | 0.285273 | 3.3:-15668024 | None:intergenic |
| CACAAACCCACTCTTAATAT+CGG | 0.339765 | 3.3:-15668358 | None:intergenic |
| AAGTTCGTTATGTCGGAAAA+AGG | 0.346729 | 3.3:+15668313 | MS.gene057897:CDS |
| ATTTATGGTGATGGATGATT+TGG | 0.351782 | 3.3:+15668395 | MS.gene057897:CDS |
| AGGACATCCTTAGTTTGGTT+TGG | 0.370323 | 3.3:-15667994 | None:intergenic |
| CAACAGTGTGATGCTTGATA+TGG | 0.370669 | 3.3:-15668436 | None:intergenic |
| TTAGCAGGACATCCTTAGTT+TGG | 0.377274 | 3.3:-15667999 | None:intergenic |
| TGGAAGAGCTTTGAGCTCTT+GGG | 0.383995 | 3.3:-15668023 | None:intergenic |
| ATCATCAATGTCTTCATTCT+GGG | 0.389042 | 3.3:-15668067 | None:intergenic |
| ATAGTCTTCGAGCAGTATAC+TGG | 0.410060 | 3.3:-15668282 | None:intergenic |
| CAACCATTCCATTTGTGCTT+AGG | 0.411279 | 3.3:-15667915 | None:intergenic |
| AGGAAGAGAACCACGGTCAT+TGG | 0.418470 | 3.3:-15668181 | None:intergenic |
| TTTGAGCTCTTGGGTTTAGC+AGG | 0.423021 | 3.3:-15668014 | None:intergenic |
| AACACTTGTCAATACCATCT+TGG | 0.428370 | 3.3:-15668648 | None:intergenic |
| GATTGAAACCTTGCAAGAAA+AGG | 0.450000 | 3.3:+15668479 | MS.gene057897:CDS |
| AGCTTAACCACGGTGCCAAT+TGG | 0.456102 | 3.3:-15667892 | None:intergenic |
| CAAGAAAAGGTTGTTGAGAT+GGG | 0.463384 | 3.3:+15668492 | MS.gene057897:CDS |
| AGCTCTTCCACTGAAATCTC+AGG | 0.471238 | 3.3:+15668036 | MS.gene057897:CDS |
| GTTAAGCTCCTAAGCACAAA+TGG | 0.472625 | 3.3:+15667907 | MS.gene057897:CDS |
| CCAAAAGCAGCCCCAAAAGC+AGG | 0.473527 | 3.3:-15668234 | None:intergenic |
| GCAAGAAAAGGTTGTTGAGA+TGG | 0.482167 | 3.3:+15668491 | MS.gene057897:CDS |
| CAATGTCTTCATTCTGGGTA+AGG | 0.483882 | 3.3:-15668062 | None:intergenic |
| ACCACGGTCATTGGCAGACC+TGG | 0.490771 | 3.3:-15668172 | None:intergenic |
| AATTTGCTATGCTTGCCAAT+TGG | 0.494602 | 3.3:+15667877 | MS.gene057897:CDS |
| AAGAAGTTTCAGTGACACTT+TGG | 0.494769 | 3.3:-15667788 | None:intergenic |
| ACCTCAAAGTCACACTTACC+TGG | 0.508917 | 3.3:-15668120 | None:intergenic |
| AACAGTGAAGTTCGTTATGT+CGG | 0.513095 | 3.3:+15668306 | MS.gene057897:CDS |
| TGTTATCACATTTATGGTGA+TGG | 0.515514 | 3.3:+15668386 | MS.gene057897:CDS |
| GGTTTGGTTGCATGTAACTC+TGG | 0.520873 | 3.3:-15667978 | None:intergenic |
| TCCAGGTAAGTGTGACTTTG+AGG | 0.521666 | 3.3:+15668119 | MS.gene057897:CDS |
| AAAGCAGGACTAGCCCCAAA+AGG | 0.523257 | 3.3:-15668201 | None:intergenic |
| GCAGGACTAGCCCCAAAAGC+AGG | 0.523795 | 3.3:-15668216 | None:intergenic |
| CATGCAACCAAACCAAACTA+AGG | 0.523850 | 3.3:+15667987 | MS.gene057897:CDS |
| ATAGGGTATCAAGTTGCTAA+AGG | 0.526772 | 3.3:+15668613 | MS.gene057897:intron |
| CTAAGCACAAATGGAATGGT+TGG | 0.538348 | 3.3:+15667916 | MS.gene057897:CDS |
| ACACCACTCGTTGTACTGCC+AGG | 0.539159 | 3.3:+15668154 | MS.gene057897:CDS |
| AGAATTTCCGATATTAAGAG+TGG | 0.543954 | 3.3:+15668351 | MS.gene057897:CDS |
| GGCTTCTCTGCAATCCAAGA+TGG | 0.558204 | 3.3:+15668634 | MS.gene057897:CDS |
| AAGTTTCAGTGACACTTTGG+TGG | 0.576601 | 3.3:-15667785 | None:intergenic |
| GCTCCTAAGCACAAATGGAA+TGG | 0.578156 | 3.3:+15667912 | MS.gene057897:CDS |
| ATGCTTGATATGGTTGACAT+TGG | 0.584309 | 3.3:-15668426 | None:intergenic |
| ACTGGACTAGCCCCAAAAGC+AGG | 0.584508 | 3.3:-15668264 | None:intergenic |
| GACATTGATGATGAAGATGA+AGG | 0.587367 | 3.3:+15668078 | MS.gene057897:CDS |
| TGTTGAGATGGGAATGGATG+AGG | 0.588340 | 3.3:+15668503 | MS.gene057897:CDS |
| ACTAAGTTATACATGTGTCC+AGG | 0.594908 | 3.3:+15668102 | MS.gene057897:CDS |
| AAAGGTTGTTGAGATGGGAA+TGG | 0.615414 | 3.3:+15668497 | MS.gene057897:CDS |
| GAATTTCCGATATTAAGAGT+GGG | 0.621582 | 3.3:+15668352 | MS.gene057897:CDS |
| GCCAGGTCTGCCAATGACCG+TGG | 0.633912 | 3.3:+15668171 | MS.gene057897:CDS |
| AAGGAAGCCTGAGATTTCAG+TGG | 0.655993 | 3.3:-15668043 | None:intergenic |
| TGTGCTTAGGAGCTTAACCA+CGG | 0.668356 | 3.3:-15667902 | None:intergenic |
| ATGCTTGCCAATTGGCACCG+TGG | 0.701156 | 3.3:+15667885 | MS.gene057897:CDS |
| AGACCTGGCAGTACAACGAG+TGG | 0.704338 | 3.3:-15668157 | None:intergenic |
| CCCCAAAAGGAAGAGAACCA+CGG | 0.716251 | 3.3:-15668188 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTCTATTTTTGTAATA+GGG | + | chr3.3:15668596-15668615 | MS.gene057897:intron | 15.0% |
| !!! | TTTCTTTCTATTTTTGTAAT+AGG | + | chr3.3:15668595-15668614 | MS.gene057897:intron | 15.0% |
| ! | GAAAGATGTTATCACATTTA+TGG | + | chr3.3:15668380-15668399 | MS.gene057897:CDS | 25.0% |
| AGAATTTCCGATATTAAGAG+TGG | + | chr3.3:15668351-15668370 | MS.gene057897:CDS | 30.0% | |
| ATCATCAATGTCTTCATTCT+GGG | - | chr3.3:15668070-15668089 | None:intergenic | 30.0% | |
| GAATTTCCGATATTAAGAGT+GGG | + | chr3.3:15668352-15668371 | MS.gene057897:CDS | 30.0% | |
| TGTTATCACATTTATGGTGA+TGG | + | chr3.3:15668386-15668405 | MS.gene057897:CDS | 30.0% | |
| !! | ATTTATGGTGATGGATGATT+TGG | + | chr3.3:15668395-15668414 | MS.gene057897:CDS | 30.0% |
| AACACTTGTCAATACCATCT+TGG | - | chr3.3:15668651-15668670 | None:intergenic | 35.0% | |
| AACAGTGAAGTTCGTTATGT+CGG | + | chr3.3:15668306-15668325 | MS.gene057897:CDS | 35.0% | |
| AAGAAGTTTCAGTGACACTT+TGG | - | chr3.3:15667791-15667810 | None:intergenic | 35.0% | |
| AAGTTCGTTATGTCGGAAAA+AGG | + | chr3.3:15668313-15668332 | MS.gene057897:CDS | 35.0% | |
| ACTAAGTTATACATGTGTCC+AGG | + | chr3.3:15668102-15668121 | MS.gene057897:CDS | 35.0% | |
| ATGCTTGATATGGTTGACAT+TGG | - | chr3.3:15668429-15668448 | None:intergenic | 35.0% | |
| CAAGAAAAGGTTGTTGAGAT+GGG | + | chr3.3:15668492-15668511 | MS.gene057897:CDS | 35.0% | |
| CACAAACCCACTCTTAATAT+CGG | - | chr3.3:15668361-15668380 | None:intergenic | 35.0% | |
| CATCATCAATGTCTTCATTC+TGG | - | chr3.3:15668071-15668090 | None:intergenic | 35.0% | |
| GATTGAAACCTTGCAAGAAA+AGG | + | chr3.3:15668479-15668498 | MS.gene057897:CDS | 35.0% | |
| ! | ATAGGGTATCAAGTTGCTAA+AGG | + | chr3.3:15668613-15668632 | MS.gene057897:intron | 35.0% |
| !! | AATGGAATGGTTGGTAGTTT+AGG | + | chr3.3:15667925-15667944 | MS.gene057897:CDS | 35.0% |
| !! | AATTTGCTATGCTTGCCAAT+TGG | + | chr3.3:15667877-15667896 | MS.gene057897:CDS | 35.0% |
| !! | GACATTGATGATGAAGATGA+AGG | + | chr3.3:15668078-15668097 | MS.gene057897:CDS | 35.0% |
| AAAGGTTGTTGAGATGGGAA+TGG | + | chr3.3:15668497-15668516 | MS.gene057897:CDS | 40.0% | |
| AAGTTTCAGTGACACTTTGG+TGG | - | chr3.3:15667788-15667807 | None:intergenic | 40.0% | |
| ATAGTCTTCGAGCAGTATAC+TGG | - | chr3.3:15668285-15668304 | None:intergenic | 40.0% | |
| CAACAGTGTGATGCTTGATA+TGG | - | chr3.3:15668439-15668458 | None:intergenic | 40.0% | |
| CAACCATTCCATTTGTGCTT+AGG | - | chr3.3:15667918-15667937 | None:intergenic | 40.0% | |
| CAATGTCTTCATTCTGGGTA+AGG | - | chr3.3:15668065-15668084 | None:intergenic | 40.0% | |
| CATGCAACCAAACCAAACTA+AGG | + | chr3.3:15667987-15668006 | MS.gene057897:CDS | 40.0% | |
| CTAAGCACAAATGGAATGGT+TGG | + | chr3.3:15667916-15667935 | MS.gene057897:CDS | 40.0% | |
| GCAAGAAAAGGTTGTTGAGA+TGG | + | chr3.3:15668491-15668510 | MS.gene057897:CDS | 40.0% | |
| GTTAAGCTCCTAAGCACAAA+TGG | + | chr3.3:15667907-15667926 | MS.gene057897:CDS | 40.0% | |
| TCGTTATGTCGGAAAAAGGA+AGG | + | chr3.3:15668317-15668336 | MS.gene057897:CDS | 40.0% | |
| TTAGCAGGACATCCTTAGTT+TGG | - | chr3.3:15668002-15668021 | None:intergenic | 40.0% | |
| ! | AGGACATCCTTAGTTTGGTT+TGG | - | chr3.3:15667997-15668016 | None:intergenic | 40.0% |
| ! | CTCAACAACCTTTTCTTGCA+AGG | - | chr3.3:15668490-15668509 | None:intergenic | 40.0% |
| ! | GACAAGTGTTTTCCTCAAGA+AGG | + | chr3.3:15668661-15668680 | MS.gene057897:CDS | 40.0% |
| AAGGAAGCCTGAGATTTCAG+TGG | - | chr3.3:15668046-15668065 | None:intergenic | 45.0% | |
| ACCTCAAAGTCACACTTACC+TGG | - | chr3.3:15668123-15668142 | None:intergenic | 45.0% | |
| AGCTCTTCCACTGAAATCTC+AGG | + | chr3.3:15668036-15668055 | MS.gene057897:CDS | 45.0% | |
| GCTCCTAAGCACAAATGGAA+TGG | + | chr3.3:15667912-15667931 | MS.gene057897:CDS | 45.0% | |
| TCCAGGTAAGTGTGACTTTG+AGG | + | chr3.3:15668119-15668138 | MS.gene057897:CDS | 45.0% | |
| TGTGCTTAGGAGCTTAACCA+CGG | - | chr3.3:15667905-15667924 | None:intergenic | 45.0% | |
| TGTTGAGATGGGAATGGATG+AGG | + | chr3.3:15668503-15668522 | MS.gene057897:CDS | 45.0% | |
| TTTGAGCTCTTGGGTTTAGC+AGG | - | chr3.3:15668017-15668036 | None:intergenic | 45.0% | |
| ! | ACCGTGGTTCTCTTCCTTTT+GGG | + | chr3.3:15668187-15668206 | MS.gene057897:CDS | 45.0% |
| ! | GGTTTGGTTGCATGTAACTC+TGG | - | chr3.3:15667981-15668000 | None:intergenic | 45.0% |
| !! | TGGAAGAGCTTTGAGCTCTT+GGG | - | chr3.3:15668026-15668045 | None:intergenic | 45.0% |
| AGGAAGAGAACCACGGTCAT+TGG | - | chr3.3:15668184-15668203 | None:intergenic | 50.0% | |
| CCCCAAAAGGAAGAGAACCA+CGG | - | chr3.3:15668191-15668210 | None:intergenic | 50.0% | |
| GGCTTCTCTGCAATCCAAGA+TGG | + | chr3.3:15668634-15668653 | MS.gene057897:CDS | 50.0% | |
| ! | AGCTTAACCACGGTGCCAAT+TGG | - | chr3.3:15667895-15667914 | None:intergenic | 50.0% |
| ! | CCGTGGTTCTCTTCCTTTTG+GGG | + | chr3.3:15668188-15668207 | MS.gene057897:CDS | 50.0% |
| ! | GACCGTGGTTCTCTTCCTTT+TGG | + | chr3.3:15668186-15668205 | MS.gene057897:CDS | 50.0% |
| !! | AAAGCAGGACTAGCCCCAAA+AGG | - | chr3.3:15668204-15668223 | None:intergenic | 50.0% |
| !! | GTGGAAGAGCTTTGAGCTCT+TGG | - | chr3.3:15668027-15668046 | None:intergenic | 50.0% |
| !!! | CTGCTTTTGGGGCTGCTTTT+GGG | + | chr3.3:15668235-15668254 | MS.gene057897:CDS | 50.0% |
| !!! | TGCTTTTGGGGCTGCTTTTG+GGG | + | chr3.3:15668236-15668255 | MS.gene057897:CDS | 50.0% |
| !!! | TTGGGGCTAGTCCTGCTTTT+GGG | + | chr3.3:15668205-15668224 | MS.gene057897:CDS | 50.0% |
| !!! | TTTGGGGCTAGTCCTGCTTT+TGG | + | chr3.3:15668204-15668223 | MS.gene057897:CDS | 50.0% |
| ACACCACTCGTTGTACTGCC+AGG | + | chr3.3:15668154-15668173 | MS.gene057897:CDS | 55.0% | |
| AGACCTGGCAGTACAACGAG+TGG | - | chr3.3:15668160-15668179 | None:intergenic | 55.0% | |
| ATGCTTGCCAATTGGCACCG+TGG | + | chr3.3:15667885-15667904 | MS.gene057897:CDS | 55.0% | |
| CCAAAAGCAGCCCCAAAAGC+AGG | - | chr3.3:15668237-15668256 | None:intergenic | 55.0% | |
| !! | ACTGGACTAGCCCCAAAAGC+AGG | - | chr3.3:15668267-15668286 | None:intergenic | 55.0% |
| !!! | CCTGCTTTTGGGGCTGCTTT+TGG | + | chr3.3:15668234-15668253 | MS.gene057897:CDS | 55.0% |
| !!! | TGGGGCTAGTCCTGCTTTTG+GGG | + | chr3.3:15668206-15668225 | MS.gene057897:CDS | 55.0% |
| ACCACGGTCATTGGCAGACC+TGG | - | chr3.3:15668175-15668194 | None:intergenic | 60.0% | |
| !! | GCAGGACTAGCCCCAAAAGC+AGG | - | chr3.3:15668219-15668238 | None:intergenic | 60.0% |
| GCCAGGTCTGCCAATGACCG+TGG | + | chr3.3:15668171-15668190 | MS.gene057897:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 15667769 | 15668691 | 15667769 | ID=MS.gene057897 |
| chr3.3 | mRNA | 15667769 | 15668691 | 15667769 | ID=MS.gene057897.t1;Parent=MS.gene057897 |
| chr3.3 | exon | 15667769 | 15668524 | 15667769 | ID=MS.gene057897.t1.exon1;Parent=MS.gene057897.t1 |
| chr3.3 | CDS | 15667769 | 15668524 | 15667769 | ID=cds.MS.gene057897.t1;Parent=MS.gene057897.t1 |
| chr3.3 | exon | 15668617 | 15668691 | 15668617 | ID=MS.gene057897.t1.exon2;Parent=MS.gene057897.t1 |
| chr3.3 | CDS | 15668617 | 15668691 | 15668617 | ID=cds.MS.gene057897.t1;Parent=MS.gene057897.t1 |
| Gene Sequence |
| Protein sequence |
