Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95308.t1 | KEH18715.1 | 96.3 | 298 | 10 | 1 | 1 | 297 | 1 | 298 | 1.80E-139 | 505.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95308.t1 | Q42538 | 87.3 | 268 | 33 | 1 | 31 | 297 | 45 | 312 | 1.2e-115 | 417.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95308.t1 | A0A072TYU4 | 96.3 | 298 | 10 | 1 | 1 | 297 | 1 | 298 | 1.3e-139 | 505.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055634 | MS.gene95308 | 0.803772 | 2.97E-49 | -1.69E-46 |
| MS.gene055849 | MS.gene95308 | 0.805025 | 1.63E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95308.t1 | MTR_8g028040 | 99.329 | 298 | 1 | 1 | 1 | 297 | 1 | 298 | 0.0 | 597 |
| MS.gene95308.t1 | MTR_3g058410 | 68.165 | 267 | 85 | 0 | 31 | 297 | 70 | 336 | 4.87e-135 | 385 |
| MS.gene95308.t1 | MTR_5g095470 | 60.490 | 286 | 109 | 1 | 16 | 297 | 36 | 321 | 3.41e-124 | 358 |
| MS.gene95308.t1 | MTR_5g023760 | 56.723 | 238 | 103 | 0 | 31 | 268 | 55 | 292 | 8.32e-98 | 290 |
| MS.gene95308.t1 | MTR_5g023760 | 56.723 | 238 | 103 | 0 | 31 | 268 | 55 | 292 | 9.73e-98 | 291 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95308.t1 | AT5G56760 | 86.194 | 268 | 36 | 1 | 31 | 297 | 45 | 312 | 5.68e-170 | 473 |
| MS.gene95308.t1 | AT1G55920 | 60.517 | 271 | 107 | 0 | 27 | 297 | 44 | 314 | 5.39e-122 | 352 |
| MS.gene95308.t1 | AT3G13110 | 61.798 | 267 | 102 | 0 | 31 | 297 | 125 | 391 | 2.34e-119 | 348 |
| MS.gene95308.t1 | AT4G35640 | 58.039 | 255 | 102 | 1 | 31 | 285 | 73 | 322 | 4.72e-96 | 287 |
| MS.gene95308.t1 | AT2G17640 | 55.686 | 255 | 108 | 1 | 31 | 285 | 36 | 285 | 4.50e-90 | 271 |
Find 117 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTGCGGGTGCTACCATTC+TGG | 0.182551 | 8.1:-73774002 | MS.gene95308:CDS |
| CAAGGGATTTCTTGCTTGTC+AGG | 0.306102 | 8.1:-73775583 | MS.gene95308:intron |
| TTCTGGGTAATATTAAGATT+GGG | 0.334846 | 8.1:-73773985 | MS.gene95308:CDS |
| TCGCAAAAGCGTTAAGAAAA+AGG | 0.349769 | 8.1:+73775703 | None:intergenic |
| TTCCGCGTCGCGGCGTGCTT+CGG | 0.365005 | 8.1:+73775854 | None:intergenic |
| ATTCTGGGTAATATTAAGAT+TGG | 0.368505 | 8.1:-73773986 | MS.gene95308:CDS |
| ATCAGACCACTCAGAGATAA+AGG | 0.371873 | 8.1:+73773814 | None:intergenic |
| GAGCACCCCATCTCCAATCT+TGG | 0.387961 | 8.1:+73774027 | None:intergenic |
| GGTTGGTAACCCGGCGAGAT+TGG | 0.391387 | 8.1:-73773900 | MS.gene95308:CDS |
| GTCGTTGGTGCCTCCGACGA+AGG | 0.394214 | 8.1:-73775900 | MS.gene95308:CDS |
| GGTGGGACTGGAAAGGTTGG+TGG | 0.399723 | 8.1:-73774061 | MS.gene95308:CDS |
| TTGGTGGTTGCCGCCTTTGG+TGG | 0.399778 | 8.1:+73775933 | None:intergenic |
| TTGTTGGTGGTTGCCGCCTT+TGG | 0.404175 | 8.1:+73775930 | None:intergenic |
| TGGTGGTTGCCGCCTTTGGT+GGG | 0.412889 | 8.1:+73775934 | None:intergenic |
| AGCACGCCGCGACGCGGAAT+CGG | 0.415234 | 8.1:-73775850 | MS.gene95308:CDS |
| CGTTCACTTTCGTTTCATCT+TGG | 0.416739 | 8.1:-73775771 | MS.gene95308:CDS |
| CATGTAACACTGGGTGGGAC+TGG | 0.419239 | 8.1:-73774073 | MS.gene95308:CDS |
| GGTGCGGGTGCTACCATTCT+GGG | 0.419338 | 8.1:-73774001 | MS.gene95308:CDS |
| TCTCAGCTTGAGGATGTGCC+CGG | 0.426819 | 8.1:-73773857 | MS.gene95308:CDS |
| GTGGGTGAGACGGCGGTGAT+TGG | 0.428760 | 8.1:-73774118 | MS.gene95308:CDS |
| GATGGGGTGCTCATTGGTGC+GGG | 0.434437 | 8.1:-73774016 | MS.gene95308:CDS |
| CCTTTGCCAATCCTCGCTGC+CGG | 0.437728 | 8.1:+73774172 | None:intergenic |
| TTGGTGCCTCCGACGAAGGC+TGG | 0.437791 | 8.1:-73775896 | MS.gene95308:CDS |
| GGGGATCGGCATCCCAAGAT+TGG | 0.448675 | 8.1:-73774040 | MS.gene95308:CDS |
| CAGTCCCACCCAGTGTTACA+TGG | 0.453460 | 8.1:+73774074 | None:intergenic |
| GTCGAGCCTGCCTCCACAAT+AGG | 0.458416 | 8.1:+73774254 | None:intergenic |
| AGCACCCCATCTCCAATCTT+GGG | 0.465916 | 8.1:+73774028 | None:intergenic |
| ATTGGGGAAGGCGCTAAGAT+TGG | 0.467802 | 8.1:-73773968 | MS.gene95308:CDS |
| CTTTGCCAATCCTCGCTGCC+GGG | 0.470723 | 8.1:+73774173 | None:intergenic |
| GACCACTGCGGTTGGTAACC+CGG | 0.471995 | 8.1:-73773909 | MS.gene95308:CDS |
| GGCGAGATTGGTTGGTGGTA+AGG | 0.473968 | 8.1:-73773888 | MS.gene95308:CDS |
| TAGAGGTAGCTTGCTAGGGC+TGG | 0.476706 | 8.1:+73775825 | None:intergenic |
| ACTCAGAGATAAAGGAAGTA+TGG | 0.477194 | 8.1:+73773822 | None:intergenic |
| GTGGGACTGGAAAGGTTGGT+GGG | 0.479022 | 8.1:-73774060 | MS.gene95308:CDS |
| TTGAGTAGAGGTAGCTTGCT+AGG | 0.480386 | 8.1:+73775820 | None:intergenic |
| GGCGCACCTATTGTGGAGGC+AGG | 0.481206 | 8.1:-73774260 | MS.gene95308:CDS |
| CTGGAAAGGTTGGTGGGGAT+CGG | 0.483329 | 8.1:-73774054 | MS.gene95308:CDS |
| TCACTGTTTGCTTAATTACA+AGG | 0.488533 | 8.1:-73775601 | MS.gene95308:CDS |
| GAAGGCGCTAAGATTGGTGC+CGG | 0.488591 | 8.1:-73773962 | MS.gene95308:CDS |
| GGATGTGCCCGGGGAGTCCA+TGG | 0.491417 | 8.1:-73773846 | MS.gene95308:CDS |
| CGGCATCCCAAGATTGGAGA+TGG | 0.491967 | 8.1:-73774034 | MS.gene95308:CDS |
| ATTCACCCGGCAGCGAGGAT+TGG | 0.492069 | 8.1:-73774178 | MS.gene95308:CDS |
| CTCAGCTTGAGGATGTGCCC+GGG | 0.494227 | 8.1:-73773856 | MS.gene95308:CDS |
| CCTCCGACGAAGGCTGGCTA+TGG | 0.494886 | 8.1:-73775890 | MS.gene95308:CDS |
| AGGGGTAGTGGTGGGTGAGA+CGG | 0.497668 | 8.1:-73774128 | MS.gene95308:CDS |
| TGACCACGCCACAGGGGTAG+TGG | 0.497766 | 8.1:-73774140 | MS.gene95308:CDS |
| AATCTTAATATTACCCAGAA+TGG | 0.498470 | 8.1:+73773988 | None:intergenic |
| ACCAACGACGGCGGAGTTGT+TGG | 0.501003 | 8.1:+73775914 | None:intergenic |
| CGGCAGCGAGGATTGGCAAA+GGG | 0.505970 | 8.1:-73774171 | MS.gene95308:CDS |
| CACCCAGTGTTACATGGTGC+AGG | 0.509289 | 8.1:+73774080 | None:intergenic |
| TGGGACTGGAAAGGTTGGTG+GGG | 0.516350 | 8.1:-73774059 | MS.gene95308:CDS |
| ATTGGAGATGGGGTGCTCAT+TGG | 0.522662 | 8.1:-73774022 | MS.gene95308:CDS |
| GGTGGTTGCCGCCTTTGGTG+GGG | 0.527306 | 8.1:+73775935 | None:intergenic |
| AGATGGGGTGCTCATTGGTG+CGG | 0.531704 | 8.1:-73774017 | MS.gene95308:CDS |
| GAGAGAGAATCGTTGAGTAG+AGG | 0.532015 | 8.1:+73775808 | None:intergenic |
| AGTATGGTCCATGGACTCCC+CGG | 0.532177 | 8.1:+73773838 | None:intergenic |
| AACGACGGCGGAGTTGTTGG+TGG | 0.533628 | 8.1:+73775917 | None:intergenic |
| CACTGTTTGCTTAATTACAA+GGG | 0.534624 | 8.1:-73775600 | MS.gene95308:CDS |
| CCACGCCACAGGGGTAGTGG+TGG | 0.535874 | 8.1:-73774137 | MS.gene95308:CDS |
| GGTAACCCGGCGAGATTGGT+TGG | 0.536148 | 8.1:-73773896 | MS.gene95308:CDS |
| GAATGTAGTGCTAGTGCTAA+CGG | 0.555892 | 8.1:+73774229 | None:intergenic |
| CTGGGTGGGACTGGAAAGGT+TGG | 0.561509 | 8.1:-73774064 | MS.gene95308:CDS |
| ACCAACAACTCCGCCGTCGT+TGG | 0.561683 | 8.1:-73775915 | MS.gene95308:CDS |
| TGAGTAGAGGTAGCTTGCTA+GGG | 0.564115 | 8.1:+73775821 | None:intergenic |
| TTACCACCAACCAATCTCGC+CGG | 0.567372 | 8.1:+73773890 | None:intergenic |
| GGCATCCCAAGATTGGAGAT+GGG | 0.569442 | 8.1:-73774033 | MS.gene95308:CDS |
| GGCACATCCTCAAGCTGAGA+CGG | 0.571158 | 8.1:+73773860 | None:intergenic |
| TACCACCAACCAATCTCGCC+GGG | 0.571788 | 8.1:+73773891 | None:intergenic |
| GGTAATATTAAGATTGGGGA+AGG | 0.571875 | 8.1:-73773980 | MS.gene95308:CDS |
| TGAGAGTAAGAGATACAAGC+AGG | 0.576379 | 8.1:+73775621 | None:intergenic |
| AGCCGAAGCACGCCGCGACG+CGG | 0.578947 | 8.1:-73775856 | MS.gene95308:CDS |
| GGTAGTGGTGGGTGAGACGG+CGG | 0.579689 | 8.1:-73774125 | MS.gene95308:CDS |
| GATAAAGGAAGTATGGTCCA+TGG | 0.580589 | 8.1:+73773829 | None:intergenic |
| TCGCGTCGCTGATGTATTCG+CGG | 0.580907 | 8.1:-73774206 | MS.gene95308:CDS |
| CCGGCAGCGAGGATTGGCAA+AGG | 0.581850 | 8.1:-73774172 | MS.gene95308:CDS |
| TGACCATAGCCAGCCTTCGT+CGG | 0.583200 | 8.1:+73775887 | None:intergenic |
| TCTGGGTAATATTAAGATTG+GGG | 0.583983 | 8.1:-73773984 | MS.gene95308:CDS |
| CCGCCACGGACCACTGCGGT+TGG | 0.588770 | 8.1:-73773917 | MS.gene95308:CDS |
| ATCGGCCGATCAATGCCGAC+CGG | 0.588986 | 8.1:-73775975 | None:intergenic |
| GGCAGCGAGGATTGGCAAAG+GGG | 0.592605 | 8.1:-73774170 | MS.gene95308:CDS |
| ACCGTGTGGCGCACCTATTG+TGG | 0.593859 | 8.1:-73774267 | MS.gene95308:CDS |
| GTATGGTCCATGGACTCCCC+GGG | 0.595665 | 8.1:+73773839 | None:intergenic |
| GTGTAGTGAAGTTCGCCGGT+CGG | 0.597964 | 8.1:+73775960 | None:intergenic |
| TGCACCATGTAACACTGGGT+GGG | 0.599409 | 8.1:-73774078 | MS.gene95308:CDS |
| TTACCAACCGCAGTGGTCCG+TGG | 0.600628 | 8.1:+73773914 | None:intergenic |
| ATACTTCCTTTATCTCTGAG+TGG | 0.602441 | 8.1:-73773820 | MS.gene95308:CDS |
| CACGCCACAGGGGTAGTGGT+GGG | 0.603461 | 8.1:-73774136 | MS.gene95308:CDS |
| GGAGACGCCGTCTCAGCTTG+AGG | 0.611463 | 8.1:-73773867 | MS.gene95308:CDS |
| GATCCTGCACCATGTAACAC+TGG | 0.613273 | 8.1:-73774083 | MS.gene95308:CDS |
| ATCAATCAAAACAACAGACC+CGG | 0.615476 | 8.1:+73773943 | None:intergenic |
| CCATAGCCAGCCTTCGTCGG+AGG | 0.616322 | 8.1:+73775890 | None:intergenic |
| AAGGCGCTAAGATTGGTGCC+GGG | 0.618996 | 8.1:-73773961 | MS.gene95308:CDS |
| TCAGCTTGAGGATGTGCCCG+GGG | 0.621469 | 8.1:-73773855 | MS.gene95308:CDS |
| ATCCTGCACCATGTAACACT+GGG | 0.622092 | 8.1:-73774082 | MS.gene95308:CDS |
| GGTTGTGTAGTGAAGTTCGC+CGG | 0.624046 | 8.1:+73775956 | None:intergenic |
| CCACCACTACCCCTGTGGCG+TGG | 0.624777 | 8.1:+73774137 | None:intergenic |
| GTGTGGCGCACCTATTGTGG+AGG | 0.628062 | 8.1:-73774264 | MS.gene95308:CDS |
| ATTATTGCAGGCGCACCGTG+TGG | 0.628755 | 8.1:-73774281 | MS.gene95308:intron |
| GCATCCCAAGATTGGAGATG+GGG | 0.630033 | 8.1:-73774032 | MS.gene95308:CDS |
| AACCCGGCGAGATTGGTTGG+TGG | 0.633827 | 8.1:-73773893 | MS.gene95308:CDS |
| TCACTACACAACCCCACCAA+AGG | 0.636171 | 8.1:-73775946 | MS.gene95308:CDS |
| TCCACAATAGGTGCGCCACA+CGG | 0.638193 | 8.1:+73774266 | None:intergenic |
| CGCCGGGTTACCAACCGCAG+TGG | 0.642904 | 8.1:+73773907 | None:intergenic |
| TTCGTCGGAGGCACCAACGA+CGG | 0.648676 | 8.1:+73775902 | None:intergenic |
| CTCACCCACCACTACCCCTG+TGG | 0.654422 | 8.1:+73774132 | None:intergenic |
| AACACTGGGTGGGACTGGAA+AGG | 0.656173 | 8.1:-73774068 | MS.gene95308:CDS |
| GTCGGAGGCACCAACGACGG+CGG | 0.657793 | 8.1:+73775905 | None:intergenic |
| CGTCGCTGATGTATTCGCGG+TGG | 0.659877 | 8.1:-73774203 | MS.gene95308:CDS |
| CTGGTTCCGATTCCGCGTCG+CGG | 0.660178 | 8.1:+73775844 | None:intergenic |
| CTGCACCATGTAACACTGGG+TGG | 0.667916 | 8.1:-73774079 | MS.gene95308:CDS |
| TGGATATTCACCCGGCAGCG+AGG | 0.671097 | 8.1:-73774183 | MS.gene95308:CDS |
| CTACACAACCCCACCAAAGG+CGG | 0.680128 | 8.1:-73775943 | MS.gene95308:CDS |
| ATTCGCGGTGGATATTCACC+CGG | 0.681804 | 8.1:-73774191 | MS.gene95308:CDS |
| ACAGCAGCAGAACTTAGCGA+CGG | 0.696865 | 8.1:+73775675 | None:intergenic |
| CCAACCGCAGTGGTCCGTGG+CGG | 0.720060 | 8.1:+73773917 | None:intergenic |
| TTTGTTTGACCACGCCACAG+GGG | 0.787151 | 8.1:-73774146 | MS.gene95308:CDS |
| TGTGCCGCCACGGACCACTG+CGG | 0.789172 | 8.1:-73773921 | MS.gene95308:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTGAATTATTAAAAAAAATA+GGG | + | chr8.1:73775131-73775150 | None:intergenic | 10.0% |
| !! | TCTGAATTATTAAAAAAAAT+AGG | + | chr8.1:73775132-73775151 | None:intergenic | 10.0% |
| !!! | TATATTTTGAAAGTAATTAA+GGG | - | chr8.1:73774300-73774319 | MS.gene95308:intron | 10.0% |
| !!! | TTATATTTTGAAAGTAATTA+AGG | - | chr8.1:73774299-73774318 | MS.gene95308:intron | 10.0% |
| !! | AAAAACCAAATTGAAAAATT+AGG | + | chr8.1:73775347-73775366 | None:intergenic | 15.0% |
| !! | AAAACCAAATTGAAAAATTA+GGG | + | chr8.1:73775346-73775365 | None:intergenic | 15.0% |
| !! | AATCCTAATTCTTAAATTTC+AGG | - | chr8.1:73775222-73775241 | MS.gene95308:intron | 20.0% |
| !! | ATCCTAATTCTTAAATTTCA+GGG | - | chr8.1:73775223-73775242 | MS.gene95308:intron | 20.0% |
| !!! | AAAACCCTAATTTTTCAATT+TGG | - | chr8.1:73775339-73775358 | MS.gene95308:intron | 20.0% |
| !!! | AAACTCTAATTTTCAATTTC+AGG | - | chr8.1:73775375-73775394 | MS.gene95308:intron | 20.0% |
| !!! | AACTCTAATTTTCAATTTCA+GGG | - | chr8.1:73775376-73775395 | MS.gene95308:intron | 20.0% |
| !!! | GTTTTTATAAATGCTATAAG+CGG | - | chr8.1:73774821-73774840 | MS.gene95308:intron | 20.0% |
| ! | AAAAATAAGCCAATCCAAAT+GGG | - | chr8.1:73774581-73774600 | MS.gene95308:intron | 25.0% |
| ! | AAACCCTAATTATTCAACTT+TGG | - | chr8.1:73774249-73774268 | MS.gene95308:CDS | 25.0% |
| ! | AAACCTGAAATTTATGAATC+AGG | + | chr8.1:73775308-73775327 | None:intergenic | 25.0% |
| ! | AAAGAATAACACAATCTAAG+CGG | + | chr8.1:73774380-73774399 | None:intergenic | 25.0% |
| ! | AAAGTTGAATAATTAGGGTT+TGG | + | chr8.1:73774250-73774269 | None:intergenic | 25.0% |
| ! | AACCCTAATTATTCAACTTT+GGG | - | chr8.1:73774250-73774269 | MS.gene95308:CDS | 25.0% |
| ! | AACCCTGAAATTTAAGAATT+AGG | + | chr8.1:73775228-73775247 | None:intergenic | 25.0% |
| ! | AACCTGAAATTTATGAATCA+GGG | + | chr8.1:73775307-73775326 | None:intergenic | 25.0% |
| ! | AATAATTCAGAGACTAGATA+TGG | - | chr8.1:73775141-73775160 | MS.gene95308:intron | 25.0% |
| ! | AATCCTGATTCTTCAAATTT+AGG | - | chr8.1:73775261-73775280 | MS.gene95308:intron | 25.0% |
| ! | AATCTTAATATTACCCAGAA+TGG | + | chr8.1:73775780-73775799 | None:intergenic | 25.0% |
| ! | ACATAATTGCATATCATGAT+AGG | + | chr8.1:73774751-73774770 | None:intergenic | 25.0% |
| ! | ATAATTCAGAGACTAGATAT+GGG | - | chr8.1:73775142-73775161 | MS.gene95308:intron | 25.0% |
| ! | ATCCTGATTCTTCAAATTTA+GGG | - | chr8.1:73775262-73775281 | MS.gene95308:intron | 25.0% |
| ! | ATTCTGGGTAATATTAAGAT+TGG | - | chr8.1:73775779-73775798 | MS.gene95308:CDS | 25.0% |
| ! | TAATTAAGGGACTAATTTGA+TGG | - | chr8.1:73774313-73774332 | MS.gene95308:intron | 25.0% |
| ! | TAGTTTAGAGACTAAATTGA+AGG | - | chr8.1:73775174-73775193 | MS.gene95308:intron | 25.0% |
| ! | TATTATTCATAAGCTTATCG+AGG | + | chr8.1:73774518-73774537 | None:intergenic | 25.0% |
| ! | TTAAAAAAAACCACACAAGT+TGG | + | chr8.1:73775438-73775457 | None:intergenic | 25.0% |
| ! | TTAAAAAAAATAGGGCTGTT+TGG | + | chr8.1:73775123-73775142 | None:intergenic | 25.0% |
| ! | TTCTGGGTAATATTAAGATT+GGG | - | chr8.1:73775780-73775799 | MS.gene95308:CDS | 25.0% |
| !! | ACTCTAATTTTCAATTTCAG+GGG | - | chr8.1:73775377-73775396 | MS.gene95308:intron | 25.0% |
| !! | TTTATCATTTGCTACAGAAA+TGG | + | chr8.1:73774789-73774808 | None:intergenic | 25.0% |
| !!! | ACTTGTGTGGTTTTTTTTAA+TGG | - | chr8.1:73775438-73775457 | MS.gene95308:intron | 25.0% |
| AACCCTAAATTTGAAGAATC+AGG | + | chr8.1:73775267-73775286 | None:intergenic | 30.0% | |
| AACCCTGATTCATAAATTTC+AGG | - | chr8.1:73775302-73775321 | MS.gene95308:intron | 30.0% | |
| AAGAATAACACAATCTAAGC+GGG | + | chr8.1:73774379-73774398 | None:intergenic | 30.0% | |
| ACCCTAATTATTCAACTTTG+GGG | - | chr8.1:73774251-73774270 | MS.gene95308:CDS | 30.0% | |
| AGACTAAATTGAAGGTTTGT+TGG | - | chr8.1:73775182-73775201 | MS.gene95308:intron | 30.0% | |
| ATAGCTTATACAAAGCAGTT+TGG | + | chr8.1:73774680-73774699 | None:intergenic | 30.0% | |
| CAAAAATAAGCCAATCCAAA+TGG | - | chr8.1:73774580-73774599 | MS.gene95308:intron | 30.0% | |
| CACTGTTTGCTTAATTACAA+GGG | - | chr8.1:73774165-73774184 | MS.gene95308:CDS | 30.0% | |
| GCATATTTGAGCTTATCAAT+TGG | + | chr8.1:73775096-73775115 | None:intergenic | 30.0% | |
| TCACTGTTTGCTTAATTACA+AGG | - | chr8.1:73774164-73774183 | MS.gene95308:CDS | 30.0% | |
| TCTGGGTAATATTAAGATTG+GGG | - | chr8.1:73775781-73775800 | MS.gene95308:CDS | 30.0% | |
| ! | CAAGTTGGAATTGAAGAATA+AGG | + | chr8.1:73775423-73775442 | None:intergenic | 30.0% |
| ! | CTTATGTACATAAGCTTTGT+TGG | + | chr8.1:73775010-73775029 | None:intergenic | 30.0% |
| !! | AGCTATAAGCTGTTTTCATA+TGG | - | chr8.1:73774694-73774713 | MS.gene95308:intron | 30.0% |
| AAGCTGCAAAATAAGCTCTT+TGG | + | chr8.1:73774608-73774627 | None:intergenic | 35.0% | |
| ACACTGTTTGGTTGGATAAA+GGG | - | chr8.1:73774353-73774372 | MS.gene95308:intron | 35.0% | |
| ACCCCCAAAGTTGAATAATT+AGG | + | chr8.1:73774256-73774275 | None:intergenic | 35.0% | |
| ACTCAGAGATAAAGGAAGTA+TGG | + | chr8.1:73775946-73775965 | None:intergenic | 35.0% | |
| ACTGTACTTGTGATTATTGC+AGG | - | chr8.1:73775472-73775491 | MS.gene95308:intron | 35.0% | |
| AGAATATGACACTGTTTGGT+TGG | - | chr8.1:73774345-73774364 | MS.gene95308:intron | 35.0% | |
| AGCTGCAAAATAAGCTCTTT+GGG | + | chr8.1:73774607-73774626 | None:intergenic | 35.0% | |
| ATACTTCCTTTATCTCTGAG+TGG | - | chr8.1:73775945-73775964 | MS.gene95308:CDS | 35.0% | |
| ATCAATCAAAACAACAGACC+CGG | + | chr8.1:73775825-73775844 | None:intergenic | 35.0% | |
| CCCCCAAAGTTGAATAATTA+GGG | + | chr8.1:73774255-73774274 | None:intergenic | 35.0% | |
| CCCTAATTATTCAACTTTGG+GGG | - | chr8.1:73774252-73774271 | MS.gene95308:CDS | 35.0% | |
| CTACAGAAATGGCTTATGTA+AGG | + | chr8.1:73774778-73774797 | None:intergenic | 35.0% | |
| GAACAGAATATGACACTGTT+TGG | - | chr8.1:73774341-73774360 | MS.gene95308:intron | 35.0% | |
| GCATAAGTTGTGAAACTGTT+TGG | + | chr8.1:73774940-73774959 | None:intergenic | 35.0% | |
| GGTAATATTAAGATTGGGGA+AGG | - | chr8.1:73775785-73775804 | MS.gene95308:CDS | 35.0% | |
| TCAAATGAGTCTATCCAAAC+AGG | - | chr8.1:73774972-73774991 | MS.gene95308:intron | 35.0% | |
| TTCTTCAATTCCAACTTGTG+TGG | - | chr8.1:73775425-73775444 | MS.gene95308:intron | 35.0% | |
| !! | CTATAAGCTGTTTTCCAAAC+AGG | + | chr8.1:73774720-73774739 | None:intergenic | 35.0% |
| !! | TCGCAAAAGCGTTAAGAAAA+AGG | + | chr8.1:73774065-73774084 | None:intergenic | 35.0% |
| !!! | GAGCTTATTTTGCAGCTTAT+AGG | - | chr8.1:73774610-73774629 | MS.gene95308:intron | 35.0% |
| AAAAATAGGGCTGTTTGGCT+TGG | + | chr8.1:73775118-73775137 | None:intergenic | 40.0% | |
| ACTCATTTGAGCTTGTCAAC+TGG | + | chr8.1:73774962-73774981 | None:intergenic | 40.0% | |
| ATCAGACCACTCAGAGATAA+AGG | + | chr8.1:73775954-73775973 | None:intergenic | 40.0% | |
| CGTTCACTTTCGTTTCATCT+TGG | - | chr8.1:73773994-73774013 | MS.gene95308:CDS | 40.0% | |
| GAATGTAGTGCTAGTGCTAA+CGG | + | chr8.1:73775539-73775558 | None:intergenic | 40.0% | |
| GACACTGTTTGGTTGGATAA+AGG | - | chr8.1:73774352-73774371 | MS.gene95308:intron | 40.0% | |
| TGAGAGTAAGAGATACAAGC+AGG | + | chr8.1:73774147-73774166 | None:intergenic | 40.0% | |
| ! | CTGTTTTCATATGGCCTGTT+TGG | - | chr8.1:73774703-73774722 | MS.gene95308:intron | 40.0% |
| ! | GATAAAGGAAGTATGGTCCA+TGG | + | chr8.1:73775939-73775958 | None:intergenic | 40.0% |
| ! | GCGGTTTTCATAAGCTATCT+TGG | - | chr8.1:73774840-73774859 | MS.gene95308:intron | 40.0% |
| ATAAGCTCTTTGGGCCCATT+TGG | + | chr8.1:73774598-73774617 | None:intergenic | 45.0% | |
| ATCCTGCACCATGTAACACT+GGG | - | chr8.1:73775683-73775702 | MS.gene95308:CDS | 45.0% | |
| CAAGGGATTTCTTGCTTGTC+AGG | - | chr8.1:73774182-73774201 | MS.gene95308:CDS | 45.0% | |
| GAGAGAGAATCGTTGAGTAG+AGG | + | chr8.1:73773960-73773979 | None:intergenic | 45.0% | |
| GGATAGTTTACGAGCCTGTT+TGG | + | chr8.1:73774989-73775008 | None:intergenic | 45.0% | |
| !! | TGAGTAGAGGTAGCTTGCTA+GGG | + | chr8.1:73773947-73773966 | None:intergenic | 45.0% |
| !! | TTGAGTAGAGGTAGCTTGCT+AGG | + | chr8.1:73773948-73773967 | None:intergenic | 45.0% |
| !! | TTTTGATTGATGTGCCGCCA+CGG | - | chr8.1:73775834-73775853 | MS.gene95308:CDS | 45.0% |
| !! | TTTTGTTTGACCACGCCACA+GGG | - | chr8.1:73775618-73775637 | MS.gene95308:CDS | 45.0% |
| ACAGCAGCAGAACTTAGCGA+CGG | + | chr8.1:73774093-73774112 | None:intergenic | 50.0% | |
| AGCACCCCATCTCCAATCTT+GGG | + | chr8.1:73775740-73775759 | None:intergenic | 50.0% | |
| ATTCGCGGTGGATATTCACC+CGG | - | chr8.1:73775574-73775593 | MS.gene95308:intron | 50.0% | |
| CTCTTTGGGCCCATTTGGAT+TGG | + | chr8.1:73774593-73774612 | None:intergenic | 50.0% | |
| GATCCTGCACCATGTAACAC+TGG | - | chr8.1:73775682-73775701 | MS.gene95308:CDS | 50.0% | |
| GCATCCCAAGATTGGAGATG+GGG | - | chr8.1:73775733-73775752 | MS.gene95308:CDS | 50.0% | |
| GGCATCCCAAGATTGGAGAT+GGG | - | chr8.1:73775732-73775751 | MS.gene95308:CDS | 50.0% | |
| GGTTGTGTAGTGAAGTTCGC+CGG | + | chr8.1:73773812-73773831 | None:intergenic | 50.0% | |
| TCACTACACAACCCCACCAA+AGG | - | chr8.1:73773819-73773838 | MS.gene95308:CDS | 50.0% | |
| TGCACCATGTAACACTGGGT+GGG | - | chr8.1:73775687-73775706 | MS.gene95308:CDS | 50.0% | |
| TTACCACCAACCAATCTCGC+CGG | + | chr8.1:73775878-73775897 | None:intergenic | 50.0% | |
| TTTGTTTGACCACGCCACAG+GGG | - | chr8.1:73775619-73775638 | MS.gene95308:CDS | 50.0% | |
| ! | ATTGGAGATGGGGTGCTCAT+TGG | - | chr8.1:73775743-73775762 | MS.gene95308:CDS | 50.0% |
| !! | ATTGGGGAAGGCGCTAAGAT+TGG | - | chr8.1:73775797-73775816 | MS.gene95308:CDS | 50.0% |
| !!! | GTTTTGTTTGACCACGCCAC+AGG | - | chr8.1:73775617-73775636 | MS.gene95308:CDS | 50.0% |
| AACACTGGGTGGGACTGGAA+AGG | - | chr8.1:73775697-73775716 | MS.gene95308:CDS | 55.0% | |
| AGTATGGTCCATGGACTCCC+CGG | + | chr8.1:73775930-73775949 | None:intergenic | 55.0% | |
| ATTATTGCAGGCGCACCGTG+TGG | - | chr8.1:73775484-73775503 | MS.gene95308:intron | 55.0% | |
| CACCCAGTGTTACATGGTGC+AGG | + | chr8.1:73775688-73775707 | None:intergenic | 55.0% | |
| CAGTCCCACCCAGTGTTACA+TGG | + | chr8.1:73775694-73775713 | None:intergenic | 55.0% | |
| CATGTAACACTGGGTGGGAC+TGG | - | chr8.1:73775692-73775711 | MS.gene95308:CDS | 55.0% | |
| CGGCATCCCAAGATTGGAGA+TGG | - | chr8.1:73775731-73775750 | MS.gene95308:CDS | 55.0% | |
| CTACACAACCCCACCAAAGG+CGG | - | chr8.1:73773822-73773841 | MS.gene95308:CDS | 55.0% | |
| CTGCACCATGTAACACTGGG+TGG | - | chr8.1:73775686-73775705 | MS.gene95308:CDS | 55.0% | |
| GAGCACCCCATCTCCAATCT+TGG | + | chr8.1:73775741-73775760 | None:intergenic | 55.0% | |
| GGCACATCCTCAAGCTGAGA+CGG | + | chr8.1:73775908-73775927 | None:intergenic | 55.0% | |
| GTGTAGTGAAGTTCGCCGGT+CGG | + | chr8.1:73773808-73773827 | None:intergenic | 55.0% | |
| TACCACCAACCAATCTCGCC+GGG | + | chr8.1:73775877-73775896 | None:intergenic | 55.0% | |
| TCCACAATAGGTGCGCCACA+CGG | + | chr8.1:73775502-73775521 | None:intergenic | 55.0% | |
| TCGCGTCGCTGATGTATTCG+CGG | - | chr8.1:73775559-73775578 | MS.gene95308:intron | 55.0% | |
| TCTCAGCTTGAGGATGTGCC+CGG | - | chr8.1:73775908-73775927 | MS.gene95308:CDS | 55.0% | |
| TGACCATAGCCAGCCTTCGT+CGG | + | chr8.1:73773881-73773900 | None:intergenic | 55.0% | |
| ! | AAGGCGCTAAGATTGGTGCC+GGG | - | chr8.1:73775804-73775823 | MS.gene95308:CDS | 55.0% |
| ! | AGATGGGGTGCTCATTGGTG+CGG | - | chr8.1:73775748-73775767 | MS.gene95308:CDS | 55.0% |
| ! | GTGGGACTGGAAAGGTTGGT+GGG | - | chr8.1:73775705-73775724 | MS.gene95308:CDS | 55.0% |
| !! | CTGGAAAGGTTGGTGGGGAT+CGG | - | chr8.1:73775711-73775730 | MS.gene95308:CDS | 55.0% |
| !! | GAAGGCGCTAAGATTGGTGC+CGG | - | chr8.1:73775803-73775822 | MS.gene95308:CDS | 55.0% |
| !! | GGCGAGATTGGTTGGTGGTA+AGG | - | chr8.1:73775877-73775896 | MS.gene95308:CDS | 55.0% |
| !! | TAGAGGTAGCTTGCTAGGGC+TGG | + | chr8.1:73773943-73773962 | None:intergenic | 55.0% |
| !! | TGGGACTGGAAAGGTTGGTG+GGG | - | chr8.1:73775706-73775725 | MS.gene95308:CDS | 55.0% |
| !! | TTGTTGGTGGTTGCCGCCTT+TGG | + | chr8.1:73773838-73773857 | None:intergenic | 55.0% |
| AACGACGGCGGAGTTGTTGG+TGG | + | chr8.1:73773851-73773870 | None:intergenic | 60.0% | |
| ACCAACAACTCCGCCGTCGT+TGG | - | chr8.1:73773850-73773869 | MS.gene95308:CDS | 60.0% | |
| ACCAACGACGGCGGAGTTGT+TGG | + | chr8.1:73773854-73773873 | None:intergenic | 60.0% | |
| ACCGTGTGGCGCACCTATTG+TGG | - | chr8.1:73775498-73775517 | MS.gene95308:intron | 60.0% | |
| ATTCACCCGGCAGCGAGGAT+TGG | - | chr8.1:73775587-73775606 | MS.gene95308:CDS | 60.0% | |
| CCTTTGCCAATCCTCGCTGC+CGG | + | chr8.1:73775596-73775615 | None:intergenic | 60.0% | |
| CGTCGCTGATGTATTCGCGG+TGG | - | chr8.1:73775562-73775581 | MS.gene95308:intron | 60.0% | |
| CTCAGCTTGAGGATGTGCCC+GGG | - | chr8.1:73775909-73775928 | MS.gene95308:CDS | 60.0% | |
| CTGGGTGGGACTGGAAAGGT+TGG | - | chr8.1:73775701-73775720 | MS.gene95308:CDS | 60.0% | |
| CTTTGCCAATCCTCGCTGCC+GGG | + | chr8.1:73775595-73775614 | None:intergenic | 60.0% | |
| GGGGATCGGCATCCCAAGAT+TGG | - | chr8.1:73775725-73775744 | MS.gene95308:CDS | 60.0% | |
| GGTAACCCGGCGAGATTGGT+TGG | - | chr8.1:73775869-73775888 | MS.gene95308:CDS | 60.0% | |
| GGTGGGACTGGAAAGGTTGG+TGG | - | chr8.1:73775704-73775723 | MS.gene95308:CDS | 60.0% | |
| GTATGGTCCATGGACTCCCC+GGG | + | chr8.1:73775929-73775948 | None:intergenic | 60.0% | |
| GTCGAGCCTGCCTCCACAAT+AGG | + | chr8.1:73775514-73775533 | None:intergenic | 60.0% | |
| GTGTGGCGCACCTATTGTGG+AGG | - | chr8.1:73775501-73775520 | MS.gene95308:intron | 60.0% | |
| TCAGCTTGAGGATGTGCCCG+GGG | - | chr8.1:73775910-73775929 | MS.gene95308:CDS | 60.0% | |
| TGGATATTCACCCGGCAGCG+AGG | - | chr8.1:73775582-73775601 | MS.gene95308:intron | 60.0% | |
| TGGTGGTTGCCGCCTTTGGT+GGG | + | chr8.1:73773834-73773853 | None:intergenic | 60.0% | |
| TTACCAACCGCAGTGGTCCG+TGG | + | chr8.1:73775854-73775873 | None:intergenic | 60.0% | |
| ! | AACCCGGCGAGATTGGTTGG+TGG | - | chr8.1:73775872-73775891 | MS.gene95308:CDS | 60.0% |
| ! | CGGCAGCGAGGATTGGCAAA+GGG | - | chr8.1:73775594-73775613 | MS.gene95308:CDS | 60.0% |
| ! | GATGGGGTGCTCATTGGTGC+GGG | - | chr8.1:73775749-73775768 | MS.gene95308:CDS | 60.0% |
| ! | GGCAGCGAGGATTGGCAAAG+GGG | - | chr8.1:73775595-73775614 | MS.gene95308:CDS | 60.0% |
| ! | GGTGCGGGTGCTACCATTCT+GGG | - | chr8.1:73775764-73775783 | MS.gene95308:CDS | 60.0% |
| ! | TGGTGCGGGTGCTACCATTC+TGG | - | chr8.1:73775763-73775782 | MS.gene95308:CDS | 60.0% |
| ! | TTGGTGGTTGCCGCCTTTGG+TGG | + | chr8.1:73773835-73773854 | None:intergenic | 60.0% |
| !! | AGGGGTAGTGGTGGGTGAGA+CGG | - | chr8.1:73775637-73775656 | MS.gene95308:CDS | 60.0% |
| !! | GACCACTGCGGTTGGTAACC+CGG | - | chr8.1:73775856-73775875 | MS.gene95308:CDS | 60.0% |
| !! | GGTTGGTAACCCGGCGAGAT+TGG | - | chr8.1:73775865-73775884 | MS.gene95308:CDS | 60.0% |
| !! | TTCGTCGGAGGCACCAACGA+CGG | + | chr8.1:73773866-73773885 | None:intergenic | 60.0% |
| CCATAGCCAGCCTTCGTCGG+AGG | + | chr8.1:73773878-73773897 | None:intergenic | 65.0% | |
| CTCACCCACCACTACCCCTG+TGG | + | chr8.1:73775636-73775655 | None:intergenic | 65.0% | |
| CTGGTTCCGATTCCGCGTCG+CGG | + | chr8.1:73773924-73773943 | None:intergenic | 65.0% | |
| GGAGACGCCGTCTCAGCTTG+AGG | - | chr8.1:73775898-73775917 | MS.gene95308:CDS | 65.0% | |
| GGCGCACCTATTGTGGAGGC+AGG | - | chr8.1:73775505-73775524 | MS.gene95308:intron | 65.0% | |
| GGTGGTTGCCGCCTTTGGTG+GGG | + | chr8.1:73773833-73773852 | None:intergenic | 65.0% | |
| GTGGGTGAGACGGCGGTGAT+TGG | - | chr8.1:73775647-73775666 | MS.gene95308:CDS | 65.0% | |
| TGACCACGCCACAGGGGTAG+TGG | - | chr8.1:73775625-73775644 | MS.gene95308:CDS | 65.0% | |
| ! | CACGCCACAGGGGTAGTGGT+GGG | - | chr8.1:73775629-73775648 | MS.gene95308:CDS | 65.0% |
| ! | CCGGCAGCGAGGATTGGCAA+AGG | - | chr8.1:73775593-73775612 | MS.gene95308:CDS | 65.0% |
| ! | CCTCCGACGAAGGCTGGCTA+TGG | - | chr8.1:73773875-73773894 | MS.gene95308:CDS | 65.0% |
| ! | GTCGTTGGTGCCTCCGACGA+AGG | - | chr8.1:73773865-73773884 | MS.gene95308:CDS | 65.0% |
| ! | TTGGTGCCTCCGACGAAGGC+TGG | - | chr8.1:73773869-73773888 | MS.gene95308:CDS | 65.0% |
| !! | GGTAGTGGTGGGTGAGACGG+CGG | - | chr8.1:73775640-73775659 | MS.gene95308:CDS | 65.0% |
| AGCACGCCGCGACGCGGAAT+CGG | - | chr8.1:73773915-73773934 | MS.gene95308:CDS | 70.0% | |
| CCAACCGCAGTGGTCCGTGG+CGG | + | chr8.1:73775851-73775870 | None:intergenic | 70.0% | |
| CCACCACTACCCCTGTGGCG+TGG | + | chr8.1:73775631-73775650 | None:intergenic | 70.0% | |
| CGCCGGGTTACCAACCGCAG+TGG | + | chr8.1:73775861-73775880 | None:intergenic | 70.0% | |
| GGATGTGCCCGGGGAGTCCA+TGG | - | chr8.1:73775919-73775938 | MS.gene95308:CDS | 70.0% | |
| TGTGCCGCCACGGACCACTG+CGG | - | chr8.1:73775844-73775863 | MS.gene95308:CDS | 70.0% | |
| TTCCGCGTCGCGGCGTGCTT+CGG | + | chr8.1:73773914-73773933 | None:intergenic | 70.0% | |
| ! | CCACGCCACAGGGGTAGTGG+TGG | - | chr8.1:73775628-73775647 | MS.gene95308:CDS | 70.0% |
| !! | GTCGGAGGCACCAACGACGG+CGG | + | chr8.1:73773863-73773882 | None:intergenic | 70.0% |
| AGCCGAAGCACGCCGCGACG+CGG | - | chr8.1:73773909-73773928 | MS.gene95308:CDS | 75.0% | |
| CCGCCACGGACCACTGCGGT+TGG | - | chr8.1:73775848-73775867 | MS.gene95308:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 73773802 | 73775985 | 73773802 | ID=MS.gene95308 |
| chr8.1 | mRNA | 73773802 | 73775985 | 73773802 | ID=MS.gene95308.t1;Parent=MS.gene95308 |
| chr8.1 | exon | 73775584 | 73775985 | 73775584 | ID=MS.gene95308.t1.exon1;Parent=MS.gene95308.t1 |
| chr8.1 | CDS | 73775584 | 73775985 | 73775584 | ID=cds.MS.gene95308.t1;Parent=MS.gene95308.t1 |
| chr8.1 | exon | 73773802 | 73774293 | 73773802 | ID=MS.gene95308.t1.exon2;Parent=MS.gene95308.t1 |
| chr8.1 | CDS | 73773802 | 73774293 | 73773802 | ID=cds.MS.gene95308.t1;Parent=MS.gene95308.t1 |
| Gene Sequence |
| Protein sequence |
