Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95329.t1 | XP_013466616.1 | 97.4 | 311 | 8 | 0 | 1 | 311 | 1 | 311 | 7.30E-139 | 503.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95329.t1 | Q9LFD5 | 43.3 | 233 | 125 | 3 | 29 | 259 | 3 | 230 | 7.1e-34 | 146.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95329.t1 | A0A072VFR7 | 97.4 | 311 | 8 | 0 | 1 | 311 | 1 | 311 | 5.3e-139 | 503.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95329 | MS.gene92820 | PPI |
| MS.gene043248 | MS.gene95329 | PPI |
| MS.gene95329 | MS.gene79606 | PPI |
| MS.gene95329 | MS.gene021689 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95329.t1 | MTR_1g032860 | 97.106 | 311 | 9 | 0 | 1 | 311 | 1 | 311 | 0.0 | 612 |
| MS.gene95329.t1 | MTR_8g105910 | 67.638 | 309 | 98 | 2 | 1 | 307 | 1 | 309 | 1.11e-145 | 412 |
| MS.gene95329.t1 | MTR_8g066460 | 55.985 | 259 | 102 | 3 | 30 | 283 | 2 | 253 | 5.99e-95 | 282 |
| MS.gene95329.t1 | MTR_8g066460 | 55.985 | 259 | 102 | 3 | 30 | 283 | 18 | 269 | 1.99e-94 | 281 |
| MS.gene95329.t1 | MTR_5g029640 | 56.757 | 259 | 100 | 3 | 30 | 283 | 2 | 253 | 8.72e-93 | 283 |
| MS.gene95329.t1 | MTR_5g029640 | 55.346 | 159 | 64 | 1 | 130 | 288 | 279 | 430 | 2.69e-48 | 168 |
| MS.gene95329.t1 | MTR_7g086080 | 41.767 | 249 | 126 | 2 | 32 | 261 | 4 | 252 | 6.68e-62 | 197 |
| MS.gene95329.t1 | MTR_5g039130 | 35.802 | 243 | 132 | 4 | 28 | 250 | 4 | 242 | 1.33e-41 | 145 |
| MS.gene95329.t1 | MTR_7g010100 | 33.865 | 251 | 125 | 5 | 33 | 250 | 7 | 249 | 4.62e-32 | 120 |
| MS.gene95329.t1 | MTR_5g038107 | 59.016 | 61 | 25 | 0 | 30 | 90 | 2 | 62 | 3.53e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95329.t1 | AT1G67950 | 54.212 | 273 | 102 | 3 | 28 | 298 | 25 | 276 | 1.62e-94 | 281 |
| MS.gene95329.t1 | AT1G67950 | 54.412 | 272 | 102 | 3 | 28 | 298 | 25 | 275 | 3.04e-94 | 281 |
| MS.gene95329.t1 | AT1G67950 | 54.412 | 272 | 102 | 3 | 28 | 298 | 26 | 276 | 4.51e-94 | 280 |
| MS.gene95329.t1 | AT4G17720 | 57.034 | 263 | 99 | 3 | 33 | 288 | 5 | 260 | 4.91e-94 | 281 |
| MS.gene95329.t1 | AT5G46870 | 57.384 | 237 | 90 | 1 | 33 | 258 | 5 | 241 | 3.16e-89 | 268 |
| MS.gene95329.t1 | AT5G46870 | 57.384 | 237 | 90 | 1 | 33 | 258 | 5 | 241 | 3.16e-89 | 268 |
| MS.gene95329.t1 | AT5G16840 | 53.219 | 233 | 103 | 3 | 29 | 259 | 3 | 231 | 8.76e-77 | 235 |
| MS.gene95329.t1 | AT5G16840 | 53.219 | 233 | 102 | 3 | 29 | 259 | 3 | 230 | 5.20e-76 | 233 |
| MS.gene95329.t1 | AT5G16840 | 53.247 | 231 | 101 | 3 | 31 | 259 | 3 | 228 | 2.36e-75 | 232 |
| MS.gene95329.t1 | AT1G67950 | 51.899 | 237 | 92 | 3 | 63 | 298 | 1 | 216 | 2.04e-72 | 223 |
| MS.gene95329.t1 | AT5G32450 | 42.800 | 250 | 123 | 3 | 32 | 261 | 5 | 254 | 3.17e-63 | 201 |
| MS.gene95329.t1 | AT1G14340 | 36.596 | 235 | 129 | 2 | 34 | 252 | 9 | 239 | 1.11e-39 | 139 |
| MS.gene95329.t1 | AT3G01210 | 31.330 | 233 | 125 | 5 | 35 | 240 | 9 | 233 | 1.18e-26 | 105 |
| MS.gene95329.t1 | AT3G01210 | 31.330 | 233 | 125 | 5 | 35 | 240 | 9 | 233 | 1.18e-26 | 105 |
Find 65 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTGCTTATGTTACCTTTA+AGG | 0.148013 | 1.3:-17953881 | MS.gene95329:CDS |
| GATGAAAGGTATCAGCTTTC+TGG | 0.202281 | 1.3:-17952667 | MS.gene95329:CDS |
| GGACTTGAGGGAAGTGCTTC+AGG | 0.208060 | 1.3:+17953648 | None:intergenic |
| GCTTCCATTGATCATAAAAT+TGG | 0.212655 | 1.3:-17952748 | MS.gene95329:CDS |
| TGCTCCCTGTGAATCCTTAA+AGG | 0.229047 | 1.3:+17953867 | None:intergenic |
| AACTTTGAGGACTCTTTAAA+TGG | 0.237107 | 1.3:-17952403 | MS.gene95329:CDS |
| GAAACATGAACGGTCCAATT+TGG | 0.261534 | 1.3:+17954664 | None:intergenic |
| GCTCCACAGCTACACCAAAT+TGG | 0.315541 | 1.3:-17954678 | MS.gene95329:CDS |
| TTATTATAGGGTTCTAAGAT+AGG | 0.338301 | 1.3:-17953717 | MS.gene95329:intron |
| ACGTCTTAACCGGAGCTTCA+TGG | 0.420415 | 1.3:-17952570 | MS.gene95329:CDS |
| AGCAATTCTTACGTCTTAAC+CGG | 0.425746 | 1.3:-17952580 | MS.gene95329:CDS |
| ATGGCTTCAGCTCTTTGATC+AGG | 0.431691 | 1.3:+17954706 | None:intergenic |
| GACTTGAGGGAAGTGCTTCA+GGG | 0.436600 | 1.3:+17953649 | None:intergenic |
| TTAAGTGATAAACTAAGTAT+TGG | 0.445760 | 1.3:-17952724 | MS.gene95329:CDS |
| GAGCAAAAGGCAAGTAGTGC+TGG | 0.446686 | 1.3:-17952616 | MS.gene95329:CDS |
| TTGGTACTTACTGGACTTGA+GGG | 0.448945 | 1.3:+17953636 | None:intergenic |
| ATTTGGTGTAGCTGTGGAGC+AGG | 0.451544 | 1.3:+17954681 | None:intergenic |
| ATCATTTACAGTGAAAGAAA+AGG | 0.454679 | 1.3:-17952451 | MS.gene95329:CDS |
| CAATTGAAGACGTTCATCAA+TGG | 0.466249 | 1.3:+17952795 | None:intergenic |
| GAATTCTTCAATGTCCTGCT+TGG | 0.473718 | 1.3:+17954062 | None:intergenic |
| TGTTACCTTTAAGGATTCAC+AGG | 0.482190 | 1.3:-17953872 | MS.gene95329:CDS |
| CTTTCCTAAAATGAAACCCT+TGG | 0.484629 | 1.3:+17952840 | None:intergenic |
| ATATGCTCAGATGAACTTTG+AGG | 0.486324 | 1.3:-17952416 | MS.gene95329:CDS |
| AACAACCATTGTCAATGAAA+AGG | 0.489656 | 1.3:-17952701 | MS.gene95329:CDS |
| TGCATTTAGCGTTGTTGCAA+AGG | 0.491279 | 1.3:-17952539 | MS.gene95329:CDS |
| AACCGCGGAAGAAGCATTAG+AGG | 0.491376 | 1.3:+17952771 | None:intergenic |
| TCTTAACTGCATCAGCACTT+TGG | 0.494465 | 1.3:+17952893 | None:intergenic |
| GAACTAACAGGAACTACTGC+AGG | 0.495119 | 1.3:+17952376 | None:intergenic |
| TCCGAAAATGACAGTAAAGC+TGG | 0.503764 | 1.3:-17952355 | MS.gene95329:CDS |
| GGAAGTTGGTACTGCTCCAC+AGG | 0.510179 | 1.3:+17953672 | None:intergenic |
| TATTGCTGTTGCTGAGCAAA+AGG | 0.512370 | 1.3:-17952629 | MS.gene95329:CDS |
| AGAGACAGCAGTTCTCTTGA+CGG | 0.514584 | 1.3:-17953845 | MS.gene95329:intron |
| CTTCAGCTCTTTGATCAGGA+TGG | 0.517896 | 1.3:+17954710 | None:intergenic |
| AATGAAACCCTTGGCAAGCA+TGG | 0.519935 | 1.3:+17952849 | None:intergenic |
| AGCTTGTTCAACCTTCTCCA+TGG | 0.525835 | 1.3:+17952492 | None:intergenic |
| AAGTGCTGATGCAGTTAAGA+AGG | 0.541174 | 1.3:-17952890 | MS.gene95329:CDS |
| ACTCGACAGCCATGAAGCTC+CGG | 0.542820 | 1.3:+17952561 | None:intergenic |
| TCATTTACAGTGAAAGAAAA+GGG | 0.548222 | 1.3:-17952450 | MS.gene95329:CDS |
| TTTGGTACTTACTGGACTTG+AGG | 0.548422 | 1.3:+17953635 | None:intergenic |
| CGTTGTTGCAAAGGCAGCTG+AGG | 0.550072 | 1.3:-17952530 | MS.gene95329:CDS |
| ATCACTGATTACTTCCAAGC+AGG | 0.552168 | 1.3:-17954076 | MS.gene95329:CDS |
| TGTAGCTGTGGAGCAGGGAA+TGG | 0.560070 | 1.3:+17954687 | None:intergenic |
| TTCAATATATTGAGATGCAA+AGG | 0.567772 | 1.3:-17954020 | MS.gene95329:intron |
| AATAAGTACCATGCTTGCCA+AGG | 0.569753 | 1.3:-17952857 | MS.gene95329:CDS |
| ACTTGAGGGAAGTGCTTCAG+GGG | 0.569844 | 1.3:+17953650 | None:intergenic |
| AGGTGAAAGAGATGGATGAA+AGG | 0.582201 | 1.3:-17952681 | MS.gene95329:CDS |
| GAAGGTTGAACAAGCTGAGG+TGG | 0.587721 | 1.3:-17952485 | MS.gene95329:CDS |
| CAGCACGATGACCATGGAGA+AGG | 0.588901 | 1.3:-17952503 | MS.gene95329:CDS |
| GGATGTCAGCACGATGACCA+TGG | 0.589946 | 1.3:-17952509 | MS.gene95329:CDS |
| CAATGAAAAGGTGAAAGAGA+TGG | 0.594437 | 1.3:-17952689 | MS.gene95329:CDS |
| GACCTCTAATGCTTCTTCCG+CGG | 0.601446 | 1.3:-17952773 | MS.gene95329:CDS |
| ATAAGTACCATGCTTGCCAA+GGG | 0.605633 | 1.3:-17952856 | MS.gene95329:CDS |
| CAGGTGAGATGGTGACATAT+AGG | 0.608640 | 1.3:+17953691 | None:intergenic |
| TTACAGTGAAAGAAAAGGGA+CGG | 0.611190 | 1.3:-17952446 | MS.gene95329:CDS |
| GTACTGCTCCACAGGTGAGA+TGG | 0.613387 | 1.3:+17953680 | None:intergenic |
| TTTGAGGACTCTTTAAATGG+CGG | 0.615614 | 1.3:-17952400 | MS.gene95329:CDS |
| GGTCCAATTTGGTGTAGCTG+TGG | 0.621466 | 1.3:+17954675 | None:intergenic |
| ATGATCAATGGAAGCAACCG+CGG | 0.627905 | 1.3:+17952756 | None:intergenic |
| GGAGAAGGTTGAACAAGCTG+AGG | 0.639161 | 1.3:-17952488 | MS.gene95329:CDS |
| GTTACCTTTAAGGATTCACA+GGG | 0.642161 | 1.3:-17953871 | MS.gene95329:CDS |
| TTTGGTGTAGCTGTGGAGCA+GGG | 0.645204 | 1.3:+17954682 | None:intergenic |
| ACTCACATTTGAAACATGAA+CGG | 0.647372 | 1.3:+17954654 | None:intergenic |
| ATATGTCACCATCTCACCTG+TGG | 0.654688 | 1.3:-17953688 | MS.gene95329:CDS |
| AACTAACAGGAACTACTGCA+GGG | 0.663390 | 1.3:+17952377 | None:intergenic |
| CTTGAGGGAAGTGCTTCAGG+GGG | 0.674891 | 1.3:+17953651 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTCAATTAATAACTAGA+TGG | - | chr1.3:17955332-17955351 | MS.gene95329:intron | 15.0% |
| !!! | AAATCCAAAATCATTTTATT+TGG | - | chr1.3:17954056-17954075 | MS.gene95329:CDS | 15.0% |
| !!! | AATTTTTTTTTTGTGTTGAA+TGG | - | chr1.3:17952528-17952547 | MS.gene95329:CDS | 15.0% |
| !!! | AGAATTTTTATAAATTGTGA+GGG | + | chr1.3:17954098-17954117 | None:intergenic | 15.0% |
| !!! | ATTCTTCGATTTTTATTATA+GGG | - | chr1.3:17954743-17954762 | MS.gene95329:intron | 15.0% |
| !!! | ATTTTTTTTTTGTGTTGAAT+GGG | - | chr1.3:17952529-17952548 | MS.gene95329:CDS | 15.0% |
| !!! | TAATGGATATTTTGTTATTT+CGG | - | chr1.3:17952831-17952850 | MS.gene95329:CDS | 15.0% |
| !!! | TAGAATTTTTATAAATTGTG+AGG | + | chr1.3:17954099-17954118 | None:intergenic | 15.0% |
| !!! | TATTCTTCGATTTTTATTAT+AGG | - | chr1.3:17954742-17954761 | MS.gene95329:intron | 15.0% |
| !!! | TTTTTTTTAGATAGTAGAAT+TGG | - | chr1.3:17953840-17953859 | MS.gene95329:intron | 15.0% |
| !! | AATATATTGTAAACTTTGAC+CGG | - | chr1.3:17955390-17955409 | MS.gene95329:intron | 20.0% |
| !! | ATAATGATGAAAATCAATCA+AGG | + | chr1.3:17952581-17952600 | None:intergenic | 20.0% |
| !! | ATCTAATAGAAATTGAAGTA+TGG | - | chr1.3:17952703-17952722 | MS.gene95329:CDS | 20.0% |
| !! | TGATAGATTACAATTAGTTA+GGG | - | chr1.3:17953980-17953999 | MS.gene95329:intron | 20.0% |
| !! | TGTATAGATTCATACTATAA+AGG | - | chr1.3:17954120-17954139 | MS.gene95329:intron | 20.0% |
| !! | TTAAGTGATAAACTAAGTAT+TGG | - | chr1.3:17955748-17955767 | MS.gene95329:intron | 20.0% |
| !!! | AAGTTTGATTTGTATTCAAT+AGG | - | chr1.3:17953345-17953364 | MS.gene95329:intron | 20.0% |
| !!! | ATTGGATTTTCATAACATTT+TGG | - | chr1.3:17953600-17953619 | MS.gene95329:intron | 20.0% |
| !!! | ATTTCGGTAATTTTAATGAA+TGG | - | chr1.3:17952847-17952866 | MS.gene95329:CDS | 20.0% |
| !!! | ATTTTTTGCTAATGAGTTTT+TGG | - | chr1.3:17952680-17952699 | MS.gene95329:CDS | 20.0% |
| !!! | GTTTCCAAATAAAATGATTT+TGG | + | chr1.3:17954063-17954082 | None:intergenic | 20.0% |
| !!! | TAAACCAATTTTATGATCAA+TGG | + | chr1.3:17955731-17955750 | None:intergenic | 20.0% |
| !!! | TATGAGCTTTTATTTTTGAT+TGG | - | chr1.3:17953582-17953601 | MS.gene95329:intron | 20.0% |
| !!! | TTTAGAAGTGTTTTTGAATA+CGG | - | chr1.3:17953036-17953055 | MS.gene95329:intron | 20.0% |
| ! | AATTAGTTAGGGAATTCAAA+TGG | - | chr1.3:17953991-17954010 | MS.gene95329:intron | 25.0% |
| ! | ATCATTTACAGTGAAAGAAA+AGG | - | chr1.3:17956021-17956040 | MS.gene95329:intron | 25.0% |
| ! | ATTAGTTAGGGAATTCAAAT+GGG | - | chr1.3:17953992-17954011 | MS.gene95329:intron | 25.0% |
| ! | ATTTCAAAAGCAATACTGAT+TGG | + | chr1.3:17952648-17952667 | None:intergenic | 25.0% |
| ! | CTATTAATATGATAGAGTTC+CGG | + | chr1.3:17953476-17953495 | None:intergenic | 25.0% |
| ! | GCACACAAAATGTTAAATTA+AGG | + | chr1.3:17953729-17953748 | None:intergenic | 25.0% |
| ! | GTGATAGATTACAATTAGTT+AGG | - | chr1.3:17953979-17953998 | MS.gene95329:intron | 25.0% |
| ! | TAAGCACATGACTTAAAATT+TGG | + | chr1.3:17954724-17954743 | None:intergenic | 25.0% |
| ! | TAATTGTAATATACCTGATC+AGG | - | chr1.3:17953872-17953891 | MS.gene95329:CDS | 25.0% |
| ! | TCATTTACAGTGAAAGAAAA+GGG | - | chr1.3:17956022-17956041 | MS.gene95329:intron | 25.0% |
| ! | TGGAAAGAAATTAAGAAGAA+AGG | + | chr1.3:17952375-17952394 | None:intergenic | 25.0% |
| ! | TTATCTGCATGAAATGAAAA+TGG | + | chr1.3:17954354-17954373 | None:intergenic | 25.0% |
| ! | TTATTTAGTGTATGCAATTG+AGG | - | chr1.3:17954881-17954900 | MS.gene95329:intron | 25.0% |
| ! | TTCAATATATTGAGATGCAA+AGG | - | chr1.3:17954452-17954471 | MS.gene95329:intron | 25.0% |
| ! | TTGCATACACTAAATAACAT+AGG | + | chr1.3:17954878-17954897 | None:intergenic | 25.0% |
| !! | AAGTGCATTTTATAGGAAAA+AGG | - | chr1.3:17952923-17952942 | MS.gene95329:intron | 25.0% |
| !! | AGTGCATTTTATAGGAAAAA+GGG | - | chr1.3:17952924-17952943 | MS.gene95329:intron | 25.0% |
| !! | ATGATATTTTGTGAGTAAAG+AGG | + | chr1.3:17953696-17953715 | None:intergenic | 25.0% |
| !! | CATCAGAAATATCTGAAATA+CGG | + | chr1.3:17954315-17954334 | None:intergenic | 25.0% |
| !! | TAAGTTACATTAGCTTGAAT+AGG | - | chr1.3:17952888-17952907 | MS.gene95329:CDS | 25.0% |
| !! | TAATTTAACATTTTGTGTGC+AGG | - | chr1.3:17953729-17953748 | MS.gene95329:intron | 25.0% |
| !! | TGAAGAATTCTTTTCATTCT+CGG | - | chr1.3:17954423-17954442 | MS.gene95329:intron | 25.0% |
| !! | TTTTCAAACTATGCTATTGT+TGG | + | chr1.3:17953265-17953284 | None:intergenic | 25.0% |
| !!! | ACTTTCAGATTTGTTTTGTT+TGG | - | chr1.3:17954164-17954183 | MS.gene95329:intron | 25.0% |
| !!! | GTTGAATGAGTTTTTTCTAA+TGG | - | chr1.3:17952814-17952833 | MS.gene95329:CDS | 25.0% |
| !!! | TGTTAAATTAAGGTATTGCT+TGG | + | chr1.3:17953719-17953738 | None:intergenic | 25.0% |
| !!! | TTAGAAGTGTTTTTGAATAC+GGG | - | chr1.3:17953037-17953056 | MS.gene95329:intron | 25.0% |
| !!! | TTATTATAGGGTTCTAAGAT+AGG | - | chr1.3:17954755-17954774 | MS.gene95329:intron | 25.0% |
| AACAACCATTGTCAATGAAA+AGG | - | chr1.3:17955771-17955790 | MS.gene95329:intron | 30.0% | |
| AATTCTTGTTCCATCATAGT+GGG | + | chr1.3:17952485-17952504 | None:intergenic | 30.0% | |
| AATTTGCAAGCCATTTGAAT+TGG | - | chr1.3:17953440-17953459 | MS.gene95329:intron | 30.0% | |
| AGTTGCTTATGTTACCTTTA+AGG | - | chr1.3:17954591-17954610 | MS.gene95329:intron | 30.0% | |
| ATAACTAGATGGATACACTA+TGG | - | chr1.3:17955343-17955362 | MS.gene95329:intron | 30.0% | |
| CAAATTAACTTTAGTGTCCT+AGG | - | chr1.3:17955265-17955284 | MS.gene95329:intron | 30.0% | |
| CTAGGACACTAAAGTTAATT+TGG | + | chr1.3:17955267-17955286 | None:intergenic | 30.0% | |
| CTCACTTAATGACATAGAAA+TGG | + | chr1.3:17954935-17954954 | None:intergenic | 30.0% | |
| GCTTCCATTGATCATAAAAT+TGG | - | chr1.3:17955724-17955743 | MS.gene95329:intron | 30.0% | |
| TAACTAGATGGATACACTAT+GGG | - | chr1.3:17955344-17955363 | MS.gene95329:intron | 30.0% | |
| TACAACTAAAATACCAACAC+AGG | + | chr1.3:17954271-17954290 | None:intergenic | 30.0% | |
| TATATTGCTTTCTGATGAAC+TGG | - | chr1.3:17953641-17953660 | MS.gene95329:intron | 30.0% | |
| TATGATTTCCAACAAAGTGA+GGG | + | chr1.3:17955490-17955509 | None:intergenic | 30.0% | |
| TATGTCAGAAAACAAACCAA+AGG | + | chr1.3:17953550-17953569 | None:intergenic | 30.0% | |
| TGATCAGGAATCAATATGTT+AGG | - | chr1.3:17953887-17953906 | MS.gene95329:CDS | 30.0% | |
| TGTGGTTAATATCTTTGTCT+GGG | - | chr1.3:17955124-17955143 | MS.gene95329:intron | 30.0% | |
| TTATGATTTCCAACAAAGTG+AGG | + | chr1.3:17955491-17955510 | None:intergenic | 30.0% | |
| TTGCAGTCAAATTTATAGTG+TGG | - | chr1.3:17955106-17955125 | MS.gene95329:intron | 30.0% | |
| TTGGAAAGAACCAATTCAAA+TGG | + | chr1.3:17953453-17953472 | None:intergenic | 30.0% | |
| ! | AAAATTTTCCCTCACTTTGT+TGG | - | chr1.3:17955479-17955498 | MS.gene95329:intron | 30.0% |
| ! | AACTTTGAGGACTCTTTAAA+TGG | - | chr1.3:17956069-17956088 | MS.gene95329:intron | 30.0% |
| ! | ACTCACATTTGAAACATGAA+CGG | + | chr1.3:17953821-17953840 | None:intergenic | 30.0% |
| ! | CAATATGTTAGGTTTTCAGT+GGG | - | chr1.3:17953898-17953917 | MS.gene95329:CDS | 30.0% |
| ! | CACACGAAAATGTTTTACAT+GGG | + | chr1.3:17955312-17955331 | None:intergenic | 30.0% |
| ! | GAAGAATTCTTTTCATTCTC+GGG | - | chr1.3:17954424-17954443 | MS.gene95329:intron | 30.0% |
| ! | GACAACGAAACTGATATTTT+GGG | + | chr1.3:17954999-17955018 | None:intergenic | 30.0% |
| ! | GATTTTGTGACATTATCTTC+AGG | + | chr1.3:17955231-17955250 | None:intergenic | 30.0% |
| ! | GGATTTTCATAACATTTTGG+TGG | - | chr1.3:17953603-17953622 | MS.gene95329:intron | 30.0% |
| ! | TCAATATGTTAGGTTTTCAG+TGG | - | chr1.3:17953897-17953916 | MS.gene95329:CDS | 30.0% |
| ! | TCACACGAAAATGTTTTACA+TGG | + | chr1.3:17955313-17955332 | None:intergenic | 30.0% |
| ! | TGACAACGAAACTGATATTT+TGG | + | chr1.3:17955000-17955019 | None:intergenic | 30.0% |
| ! | TTTCACCTTTTCATTGACAA+TGG | + | chr1.3:17955779-17955798 | None:intergenic | 30.0% |
| !! | GCAATAATCTTGGTTACTTT+TGG | - | chr1.3:17954207-17954226 | MS.gene95329:intron | 30.0% |
| !! | TAACATATTGATTCCTGATC+AGG | + | chr1.3:17953888-17953907 | None:intergenic | 30.0% |
| !! | TTATTGACTATTGGTTCCTT+TGG | - | chr1.3:17953531-17953550 | MS.gene95329:intron | 30.0% |
| !!! | GTTTTGTTTGGAAGATAAGT+TGG | - | chr1.3:17954176-17954195 | MS.gene95329:intron | 30.0% |
| AACCACTCACACTTGAAAAA+GGG | + | chr1.3:17953080-17953099 | None:intergenic | 35.0% | |
| AAGAATCAAGAAACCCATGA+AGG | + | chr1.3:17952421-17952440 | None:intergenic | 35.0% | |
| AAGTCTCTTTCAGATCTATC+CGG | + | chr1.3:17955412-17955431 | None:intergenic | 35.0% | |
| ACAATCAAAGGGTGACATTT+AGG | + | chr1.3:17954543-17954562 | None:intergenic | 35.0% | |
| ACTGCAATAGTTTAGCCATA+TGG | + | chr1.3:17955093-17955112 | None:intergenic | 35.0% | |
| AGCAATTCTTACGTCTTAAC+CGG | - | chr1.3:17955892-17955911 | MS.gene95329:intron | 35.0% | |
| AGGATAAAGTAGCAGCAATT+TGG | + | chr1.3:17954858-17954877 | None:intergenic | 35.0% | |
| ATAAAGGAACCGAAGATGAT+CGG | - | chr1.3:17954136-17954155 | MS.gene95329:intron | 35.0% | |
| ATATGCTCAGATGAACTTTG+AGG | - | chr1.3:17956056-17956075 | MS.gene95329:intron | 35.0% | |
| ATGGTTCAAAACCTGAAACT+AGG | + | chr1.3:17955074-17955093 | None:intergenic | 35.0% | |
| CAATGAAAAGGTGAAAGAGA+TGG | - | chr1.3:17955783-17955802 | MS.gene95329:intron | 35.0% | |
| CAATTCTTGTTCCATCATAG+TGG | + | chr1.3:17952486-17952505 | None:intergenic | 35.0% | |
| CAATTGAAGACGTTCATCAA+TGG | + | chr1.3:17955680-17955699 | None:intergenic | 35.0% | |
| CCTGCAGAATTACAATCAAA+GGG | + | chr1.3:17954554-17954573 | None:intergenic | 35.0% | |
| CCTGTGAATGGATAAAATGT+TGG | - | chr1.3:17953117-17953136 | MS.gene95329:intron | 35.0% | |
| CCTTTGATTGTAATTCTGCA+GGG | - | chr1.3:17954552-17954571 | MS.gene95329:intron | 35.0% | |
| CTTGATATAACCTTTCCTCT+TGG | - | chr1.3:17953507-17953526 | MS.gene95329:intron | 35.0% | |
| CTTTCCTAAAATGAAACCCT+TGG | + | chr1.3:17955635-17955654 | None:intergenic | 35.0% | |
| GCAAATAACGCAAACATGTT+CGG | + | chr1.3:17954977-17954996 | None:intergenic | 35.0% | |
| GTGTGGTTAATATCTTTGTC+TGG | - | chr1.3:17955123-17955142 | MS.gene95329:intron | 35.0% | |
| TAACCACTCACACTTGAAAA+AGG | + | chr1.3:17953081-17953100 | None:intergenic | 35.0% | |
| TAATATGATAGAGTTCCGGT+TGG | + | chr1.3:17953472-17953491 | None:intergenic | 35.0% | |
| TCATATCACATAACAGCTTG+AGG | + | chr1.3:17952750-17952769 | None:intergenic | 35.0% | |
| TGGGAATATTTGATTCTGCT+AGG | + | chr1.3:17955293-17955312 | None:intergenic | 35.0% | |
| TGTTAACCTGCTACTGTTTA+TGG | + | chr1.3:17953945-17953964 | None:intergenic | 35.0% | |
| TTACAGTGAAAGAAAAGGGA+CGG | - | chr1.3:17956026-17956045 | MS.gene95329:intron | 35.0% | |
| TTTGAGGACTCTTTAAATGG+CGG | - | chr1.3:17956072-17956091 | MS.gene95329:intron | 35.0% | |
| ! | AAGTCTTTTCCGATCATCTT+CGG | + | chr1.3:17954148-17954167 | None:intergenic | 35.0% |
| ! | CCAACATTTTATCCATTCAC+AGG | + | chr1.3:17953120-17953139 | None:intergenic | 35.0% |
| ! | GCTCATCAAGTGCATTTTAT+AGG | - | chr1.3:17952916-17952935 | MS.gene95329:intron | 35.0% |
| ! | GTTACCTTTAAGGATTCACA+GGG | - | chr1.3:17954601-17954620 | MS.gene95329:intron | 35.0% |
| ! | TGTTACCTTTAAGGATTCAC+AGG | - | chr1.3:17954600-17954619 | MS.gene95329:intron | 35.0% |
| ! | TTGAATTGGTTCTTTCCAAC+CGG | - | chr1.3:17953454-17953473 | MS.gene95329:intron | 35.0% |
| !! | AATGGACTAGCATAAGACAA+TGG | + | chr1.3:17954917-17954936 | None:intergenic | 35.0% |
| !! | CAAGGGTTTCATTTTAGGAA+AGG | - | chr1.3:17955633-17955652 | MS.gene95329:intron | 35.0% |
| !! | GGCTGATTTTGCAATAATCT+TGG | - | chr1.3:17954197-17954216 | MS.gene95329:intron | 35.0% |
| !! | TACACTATGGGTGTTGTTTA+TGG | - | chr1.3:17955356-17955375 | MS.gene95329:intron | 35.0% |
| !! | TTTTTGAATACGGGCTAATG+TGG | - | chr1.3:17953046-17953065 | MS.gene95329:intron | 35.0% |
| !!! | ACCAGCTTTACTGTCATTTT+CGG | + | chr1.3:17956121-17956140 | None:intergenic | 35.0% |
| !!! | GAAGTATGGTTTTGTAGTGT+TGG | - | chr1.3:17952717-17952736 | MS.gene95329:CDS | 35.0% |
| !!! | GTTTCAGGTTTTGAACCATA+TGG | - | chr1.3:17955075-17955094 | MS.gene95329:intron | 35.0% |
| AAATACCAACACAGGACAGT+AGG | + | chr1.3:17954263-17954282 | None:intergenic | 40.0% | |
| AACCCATGAAGGATCTGAAA+CGG | + | chr1.3:17952410-17952429 | None:intergenic | 40.0% | |
| AACTAACAGGAACTACTGCA+GGG | + | chr1.3:17956098-17956117 | None:intergenic | 40.0% | |
| AATAAGTACCATGCTTGCCA+AGG | - | chr1.3:17955615-17955634 | MS.gene95329:intron | 40.0% | |
| AATACCAACACAGGACAGTA+GGG | + | chr1.3:17954262-17954281 | None:intergenic | 40.0% | |
| ACAAGCTGAGGTGGAAAAAA+AGG | - | chr1.3:17955996-17956015 | MS.gene95329:intron | 40.0% | |
| ACCATTTCGACAACACTGAT+TGG | - | chr1.3:17953290-17953309 | MS.gene95329:intron | 40.0% | |
| AGCAGCAATTTGGTACTTAC+TGG | + | chr1.3:17954848-17954867 | None:intergenic | 40.0% | |
| AGGTGAAAGAGATGGATGAA+AGG | - | chr1.3:17955791-17955810 | MS.gene95329:intron | 40.0% | |
| AGTAGGGCACAGATAAGAAT+TGG | + | chr1.3:17954246-17954265 | None:intergenic | 40.0% | |
| AGTCAATAAGCCAAGAGGAA+AGG | + | chr1.3:17953520-17953539 | None:intergenic | 40.0% | |
| ATAAGTACCATGCTTGCCAA+GGG | - | chr1.3:17955616-17955635 | MS.gene95329:intron | 40.0% | |
| CAAACAATGACAGTGACAAG+AGG | + | chr1.3:17953669-17953688 | None:intergenic | 40.0% | |
| CAGTACTGCATATAAGTTGC+TGG | + | chr1.3:17955195-17955214 | None:intergenic | 40.0% | |
| CCAATAGTCAATAAGCCAAG+AGG | + | chr1.3:17953525-17953544 | None:intergenic | 40.0% | |
| CCCTGCAGAATTACAATCAA+AGG | + | chr1.3:17954555-17954574 | None:intergenic | 40.0% | |
| CCCTTTGATTGTAATTCTGC+AGG | - | chr1.3:17954551-17954570 | MS.gene95329:intron | 40.0% | |
| GAAACATGAACGGTCCAATT+TGG | + | chr1.3:17953811-17953830 | None:intergenic | 40.0% | |
| GAATTCTTCAATGTCCTGCT+TGG | + | chr1.3:17954413-17954432 | None:intergenic | 40.0% | |
| TCCAATCAGTGTTGTCGAAA+TGG | + | chr1.3:17953294-17953313 | None:intergenic | 40.0% | |
| TCCGAAAATGACAGTAAAGC+TGG | - | chr1.3:17956117-17956136 | MS.gene95329:intron | 40.0% | |
| TCTTAACTGCATCAGCACTT+TGG | + | chr1.3:17955582-17955601 | None:intergenic | 40.0% | |
| TGAAACGGAAAGAAAGTGGA+TGG | + | chr1.3:17952395-17952414 | None:intergenic | 40.0% | |
| TGCATTTAGCGTTGTTGCAA+AGG | - | chr1.3:17955933-17955952 | MS.gene95329:intron | 40.0% | |
| TTCCGTTTCAGATCCTTCAT+GGG | - | chr1.3:17952405-17952424 | MS.gene95329:CDS | 40.0% | |
| TTGGTACTTACTGGACTTGA+GGG | + | chr1.3:17954839-17954858 | None:intergenic | 40.0% | |
| TTTCCGTTTCAGATCCTTCA+TGG | - | chr1.3:17952404-17952423 | MS.gene95329:CDS | 40.0% | |
| TTTGGTACTTACTGGACTTG+AGG | + | chr1.3:17954840-17954859 | None:intergenic | 40.0% | |
| ! | AACCTAATGCGTTGAGGTTT+TGG | - | chr1.3:17953163-17953182 | MS.gene95329:intron | 40.0% |
| ! | ACCTAATGCGTTGAGGTTTT+GGG | - | chr1.3:17953164-17953183 | MS.gene95329:intron | 40.0% |
| ! | ATCACTGATTACTTCCAAGC+AGG | - | chr1.3:17954396-17954415 | MS.gene95329:intron | 40.0% |
| ! | CCTCTTGGCTTATTGACTAT+TGG | - | chr1.3:17953522-17953541 | MS.gene95329:intron | 40.0% |
| ! | CTTGCCAAGGGTTTCATTTT+AGG | - | chr1.3:17955628-17955647 | MS.gene95329:intron | 40.0% |
| ! | GATCTGAAACGGAAAGAAAG+TGG | + | chr1.3:17952399-17952418 | None:intergenic | 40.0% |
| ! | TATTGCTGTTGCTGAGCAAA+AGG | - | chr1.3:17955843-17955862 | MS.gene95329:intron | 40.0% |
| !! | AAGTGCTGATGCAGTTAAGA+AGG | - | chr1.3:17955582-17955601 | MS.gene95329:intron | 40.0% |
| !! | GATGAAAGGTATCAGCTTTC+TGG | - | chr1.3:17955805-17955824 | MS.gene95329:intron | 40.0% |
| !!! | CTGTCATTTTCGGAACTAAC+AGG | + | chr1.3:17956111-17956130 | None:intergenic | 40.0% |
| AATGAAACCCTTGGCAAGCA+TGG | + | chr1.3:17955626-17955645 | None:intergenic | 45.0% | |
| ACCCAAAACCTCAACGCATT+AGG | + | chr1.3:17953168-17953187 | None:intergenic | 45.0% | |
| AGAAGAAAGGAGAAGAGCAG+AGG | + | chr1.3:17952362-17952381 | None:intergenic | 45.0% | |
| AGAGACAGCAGTTCTCTTGA+CGG | - | chr1.3:17954627-17954646 | MS.gene95329:intron | 45.0% | |
| ATATGTCACCATCTCACCTG+TGG | - | chr1.3:17954784-17954803 | MS.gene95329:intron | 45.0% | |
| ATGATCAATGGAAGCAACCG+CGG | + | chr1.3:17955719-17955738 | None:intergenic | 45.0% | |
| ATGGCTTCAGCTCTTTGATC+AGG | + | chr1.3:17953769-17953788 | None:intergenic | 45.0% | |
| CAGGTGAGATGGTGACATAT+AGG | + | chr1.3:17954784-17954803 | None:intergenic | 45.0% | |
| CCTAGTAACCTAATGCGTTG+AGG | - | chr1.3:17953157-17953176 | MS.gene95329:intron | 45.0% | |
| CCTCAACGCATTAGGTTACT+AGG | + | chr1.3:17953160-17953179 | None:intergenic | 45.0% | |
| CTTCAGCTCTTTGATCAGGA+TGG | + | chr1.3:17953765-17953784 | None:intergenic | 45.0% | |
| GAACTAACAGGAACTACTGC+AGG | + | chr1.3:17956099-17956118 | None:intergenic | 45.0% | |
| GAAGAAAGGAGAAGAGCAGA+GGG | + | chr1.3:17952361-17952380 | None:intergenic | 45.0% | |
| GCTATTGTTGGAGAGTCTAG+AGG | + | chr1.3:17953253-17953272 | None:intergenic | 45.0% | |
| GTAACGTGTTCCCACTATGA+TGG | - | chr1.3:17952472-17952491 | MS.gene95329:CDS | 45.0% | |
| TCACATCACTCACCTGTGAA+TGG | - | chr1.3:17953105-17953124 | MS.gene95329:intron | 45.0% | |
| TGCATGCCATAAACAGTAGC+AGG | - | chr1.3:17953936-17953955 | MS.gene95329:intron | 45.0% | |
| TGCTCCCTGTGAATCCTTAA+AGG | + | chr1.3:17954608-17954627 | None:intergenic | 45.0% | |
| TGGGAGATTCAGAACTGTGA+TGG | - | chr1.3:17952548-17952567 | MS.gene95329:CDS | 45.0% | |
| TTTGATTCTGCTAGGAGCCT+AGG | + | chr1.3:17955285-17955304 | None:intergenic | 45.0% | |
| ! | AGCTTGTTCAACCTTCTCCA+TGG | + | chr1.3:17955983-17956002 | None:intergenic | 45.0% |
| ! | ATTTTGTGTGCAGGCATCAG+TGG | - | chr1.3:17953738-17953757 | MS.gene95329:intron | 45.0% |
| ! | CTTGACTGACTCCTAGTTTC+AGG | - | chr1.3:17955060-17955079 | MS.gene95329:intron | 45.0% |
| !!! | AGCCCTTTTTCAAGTGTGAG+TGG | - | chr1.3:17953075-17953094 | MS.gene95329:intron | 45.0% |
| !!! | TAATGCGTTGAGGTTTTGGG+TGG | - | chr1.3:17953167-17953186 | MS.gene95329:intron | 45.0% |
| AACCACAGGACCAATGCTCT+AGG | + | chr1.3:17953220-17953239 | None:intergenic | 50.0% | |
| ACGTCTTAACCGGAGCTTCA+TGG | - | chr1.3:17955902-17955921 | MS.gene95329:intron | 50.0% | |
| CTCCTGTAGTCCTAGAGCAT+TGG | - | chr1.3:17953207-17953226 | MS.gene95329:intron | 50.0% | |
| GAAGGTTGAACAAGCTGAGG+TGG | - | chr1.3:17955987-17956006 | MS.gene95329:intron | 50.0% | |
| GACCTCTAATGCTTCTTCCG+CGG | - | chr1.3:17955699-17955718 | MS.gene95329:intron | 50.0% | |
| GAGCAAAAGGCAAGTAGTGC+TGG | - | chr1.3:17955856-17955875 | MS.gene95329:intron | 50.0% | |
| GCTCCACAGCTACACCAAAT+TGG | - | chr1.3:17953794-17953813 | MS.gene95329:intron | 50.0% | |
| GGAGAAGGTTGAACAAGCTG+AGG | - | chr1.3:17955984-17956003 | MS.gene95329:intron | 50.0% | |
| GTTGGAGAGTCTAGAGGTCA+CGG | + | chr1.3:17953247-17953266 | None:intergenic | 50.0% | |
| TTGGAGAGTCTAGAGGTCAC+GGG | + | chr1.3:17953246-17953265 | None:intergenic | 50.0% | |
| ! | TTTGGTGTAGCTGTGGAGCA+GGG | + | chr1.3:17953793-17953812 | None:intergenic | 50.0% |
| !! | AACCGCGGAAGAAGCATTAG+AGG | + | chr1.3:17955704-17955723 | None:intergenic | 50.0% |
| !! | ACTTGAGGGAAGTGCTTCAG+GGG | + | chr1.3:17954825-17954844 | None:intergenic | 50.0% |
| !! | ATGCTCTAGGACTACAGGAG+AGG | + | chr1.3:17953207-17953226 | None:intergenic | 50.0% |
| !! | ATTTGGTGTAGCTGTGGAGC+AGG | + | chr1.3:17953794-17953813 | None:intergenic | 50.0% |
| !! | GACCAATGCTCTAGGACTAC+AGG | + | chr1.3:17953212-17953231 | None:intergenic | 50.0% |
| !! | GACTTGAGGGAAGTGCTTCA+GGG | + | chr1.3:17954826-17954845 | None:intergenic | 50.0% |
| !! | GGTCCAATTTGGTGTAGCTG+TGG | + | chr1.3:17953800-17953819 | None:intergenic | 50.0% |
| !! | TGCTCTAGGACTACAGGAGA+GGG | + | chr1.3:17953206-17953225 | None:intergenic | 50.0% |
| !!! | TGAGGTTTTGGGTGGAGATG+TGG | - | chr1.3:17953175-17953194 | MS.gene95329:intron | 50.0% |
| ACTCGACAGCCATGAAGCTC+CGG | + | chr1.3:17955914-17955933 | None:intergenic | 55.0% | |
| CAGCACGATGACCATGGAGA+AGG | - | chr1.3:17955969-17955988 | MS.gene95329:intron | 55.0% | |
| CGTTGTTGCAAAGGCAGCTG+AGG | - | chr1.3:17955942-17955961 | MS.gene95329:intron | 55.0% | |
| GGATGTCAGCACGATGACCA+TGG | - | chr1.3:17955963-17955982 | MS.gene95329:intron | 55.0% | |
| GTACTGCTCCACAGGTGAGA+TGG | + | chr1.3:17954795-17954814 | None:intergenic | 55.0% | |
| TGTAGCTGTGGAGCAGGGAA+TGG | + | chr1.3:17953788-17953807 | None:intergenic | 55.0% | |
| TGTGCCCTACTGTCCTGTGT+TGG | - | chr1.3:17954255-17954274 | MS.gene95329:intron | 55.0% | |
| ! | GAAGTGCTTCAGGGGGAAGT+TGG | + | chr1.3:17954817-17954836 | None:intergenic | 55.0% |
| !! | CTTGAGGGAAGTGCTTCAGG+GGG | + | chr1.3:17954824-17954843 | None:intergenic | 55.0% |
| !! | GGAAGTTGGTACTGCTCCAC+AGG | + | chr1.3:17954803-17954822 | None:intergenic | 55.0% |
| !! | GGACTTGAGGGAAGTGCTTC+AGG | + | chr1.3:17954827-17954846 | None:intergenic | 55.0% |
| !! | GTCCTAGAGCATTGGTCCTG+TGG | - | chr1.3:17953215-17953234 | MS.gene95329:intron | 55.0% |
| GAGGTCACGGGAGAAACCAC+AGG | + | chr1.3:17953234-17953253 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 17952339 | 17956155 | 17952339 | ID=MS.gene95329 |
| chr1.3 | mRNA | 17952339 | 17956155 | 17952339 | ID=MS.gene95329.t1;Parent=MS.gene95329 |
| chr1.3 | exon | 17956150 | 17956155 | 17956150 | ID=MS.gene95329.t1.exon1;Parent=MS.gene95329.t1 |
| chr1.3 | CDS | 17956150 | 17956155 | 17956150 | ID=cds.MS.gene95329.t1;Parent=MS.gene95329.t1 |
| chr1.3 | exon | 17954660 | 17954743 | 17954660 | ID=MS.gene95329.t1.exon2;Parent=MS.gene95329.t1 |
| chr1.3 | CDS | 17954660 | 17954743 | 17954660 | ID=cds.MS.gene95329.t1;Parent=MS.gene95329.t1 |
| chr1.3 | exon | 17954021 | 17954124 | 17954021 | ID=MS.gene95329.t1.exon3;Parent=MS.gene95329.t1 |
| chr1.3 | CDS | 17954021 | 17954124 | 17954021 | ID=cds.MS.gene95329.t1;Parent=MS.gene95329.t1 |
| chr1.3 | exon | 17953846 | 17953921 | 17953846 | ID=MS.gene95329.t1.exon4;Parent=MS.gene95329.t1 |
| chr1.3 | CDS | 17953846 | 17953921 | 17953846 | ID=cds.MS.gene95329.t1;Parent=MS.gene95329.t1 |
| chr1.3 | exon | 17953647 | 17953730 | 17953647 | ID=MS.gene95329.t1.exon5;Parent=MS.gene95329.t1 |
| chr1.3 | CDS | 17953647 | 17953730 | 17953647 | ID=cds.MS.gene95329.t1;Parent=MS.gene95329.t1 |
| chr1.3 | exon | 17952339 | 17952920 | 17952339 | ID=MS.gene95329.t1.exon6;Parent=MS.gene95329.t1 |
| chr1.3 | CDS | 17952339 | 17952920 | 17952339 | ID=cds.MS.gene95329.t1;Parent=MS.gene95329.t1 |
| Gene Sequence |
| Protein sequence |
