Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95392.t1 | RHN67368.1 | 54.7 | 1079 | 140 | 11 | 2 | 1067 | 7 | 749 | 4.20E-287 | 997.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95392.t1 | A0A396IRT2 | 54.7 | 1079 | 140 | 11 | 2 | 1067 | 7 | 749 | 3.1e-287 | 997.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051265 | MS.gene95392 | 0.810585 | 1.07E-50 | -1.69E-46 |
MS.gene053074 | MS.gene95392 | 0.826325 | 2.89E-54 | -1.69E-46 |
MS.gene058168 | MS.gene95392 | 0.840118 | 1.05E-57 | -1.69E-46 |
MS.gene059124 | MS.gene95392 | 0.825617 | 4.25E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95392.t1 | MTR_3g058570 | 79.512 | 410 | 52 | 4 | 672 | 1067 | 1 | 392 | 0.0 | 628 |
MS.gene95392.t1 | MTR_3g058570 | 63.918 | 194 | 38 | 4 | 364 | 543 | 1 | 176 | 2.50e-66 | 229 |
MS.gene95392.t1 | MTR_3g051060 | 59.897 | 581 | 161 | 16 | 2 | 559 | 7 | 538 | 0.0 | 623 |
MS.gene95392.t1 | MTR_3g051060 | 50.649 | 539 | 205 | 12 | 544 | 1064 | 244 | 739 | 1.48e-159 | 490 |
MS.gene95392.t1 | MTR_5g085340 | 53.304 | 454 | 172 | 6 | 639 | 1067 | 314 | 752 | 5.51e-143 | 447 |
MS.gene95392.t1 | MTR_5g085340 | 41.343 | 566 | 245 | 13 | 16 | 543 | 21 | 537 | 1.64e-115 | 374 |
MS.gene95392.t1 | MTR_5g085350 | 53.241 | 432 | 185 | 5 | 639 | 1067 | 314 | 731 | 1.39e-136 | 430 |
MS.gene95392.t1 | MTR_5g085350 | 41.209 | 546 | 253 | 14 | 16 | 543 | 21 | 516 | 3.10e-106 | 349 |
MS.gene95392.t1 | MTR_5g085350 | 40.223 | 716 | 334 | 17 | 415 | 1067 | 60 | 744 | 4.19e-136 | 429 |
MS.gene95392.t1 | MTR_5g085350 | 41.058 | 548 | 264 | 13 | 16 | 543 | 21 | 529 | 8.90e-106 | 348 |
MS.gene95392.t1 | MTR_3g058550 | 88.144 | 194 | 20 | 2 | 43 | 235 | 1 | 192 | 5.61e-113 | 349 |
MS.gene95392.t1 | MTR_5g085360 | 41.794 | 457 | 200 | 8 | 639 | 1062 | 315 | 738 | 6.95e-98 | 327 |
MS.gene95392.t1 | MTR_5g085360 | 34.168 | 559 | 274 | 13 | 16 | 538 | 21 | 521 | 8.38e-73 | 257 |
MS.gene95392.t1 | MTR_2g020510 | 34.164 | 562 | 310 | 10 | 511 | 1059 | 171 | 685 | 2.24e-86 | 294 |
MS.gene95392.t1 | MTR_2g020510 | 28.292 | 562 | 329 | 14 | 13 | 567 | 4 | 498 | 3.17e-56 | 208 |
MS.gene95392.t1 | MTR_3g050500 | 40.046 | 437 | 221 | 6 | 658 | 1058 | 297 | 728 | 1.30e-85 | 293 |
MS.gene95392.t1 | MTR_3g050500 | 33.512 | 561 | 263 | 11 | 22 | 543 | 31 | 520 | 5.30e-73 | 257 |
MS.gene95392.t1 | MTR_2g020450 | 32.862 | 566 | 314 | 12 | 511 | 1059 | 171 | 687 | 3.43e-73 | 257 |
MS.gene95392.t1 | MTR_2g020450 | 28.342 | 561 | 331 | 14 | 14 | 567 | 5 | 501 | 6.47e-51 | 192 |
MS.gene95392.t1 | MTR_2g020470 | 34.141 | 495 | 252 | 11 | 572 | 1059 | 240 | 667 | 7.29e-73 | 256 |
MS.gene95392.t1 | MTR_2g020470 | 27.629 | 561 | 314 | 15 | 14 | 567 | 5 | 480 | 2.71e-45 | 175 |
MS.gene95392.t1 | MTR_2g438740 | 33.010 | 309 | 193 | 4 | 747 | 1050 | 264 | 563 | 4.57e-44 | 169 |
MS.gene95392.t1 | MTR_3g055310 | 32.990 | 291 | 187 | 3 | 755 | 1044 | 53 | 336 | 6.84e-44 | 163 |
MS.gene95392.t1 | MTR_3g055310 | 32.990 | 291 | 187 | 3 | 755 | 1044 | 116 | 399 | 9.86e-44 | 165 |
MS.gene95392.t1 | MTR_5g091220 | 34.899 | 298 | 184 | 5 | 755 | 1050 | 309 | 598 | 1.06e-43 | 169 |
MS.gene95392.t1 | MTR_5g091220 | 25.463 | 216 | 146 | 4 | 23 | 238 | 39 | 239 | 3.59e-12 | 70.9 |
MS.gene95392.t1 | MTR_3g055310 | 32.990 | 291 | 187 | 3 | 755 | 1044 | 168 | 451 | 2.88e-43 | 165 |
MS.gene95392.t1 | MTR_3g055310 | 32.990 | 291 | 187 | 3 | 755 | 1044 | 196 | 479 | 3.52e-43 | 165 |
MS.gene95392.t1 | MTR_3g055310 | 32.990 | 291 | 187 | 3 | 755 | 1044 | 194 | 477 | 5.27e-43 | 164 |
MS.gene95392.t1 | MTR_3g055310 | 32.990 | 291 | 187 | 3 | 755 | 1044 | 221 | 504 | 9.77e-43 | 164 |
MS.gene95392.t1 | MTR_2g438400 | 33.333 | 318 | 199 | 4 | 739 | 1050 | 231 | 541 | 3.19e-42 | 164 |
MS.gene95392.t1 | MTR_5g028190 | 32.353 | 306 | 186 | 4 | 758 | 1054 | 239 | 532 | 3.83e-42 | 163 |
MS.gene95392.t1 | MTR_5g028190 | 31.100 | 209 | 115 | 7 | 41 | 236 | 7 | 199 | 7.97e-15 | 79.3 |
MS.gene95392.t1 | MTR_3g051020 | 46.707 | 167 | 77 | 2 | 18 | 184 | 26 | 180 | 3.06e-41 | 151 |
MS.gene95392.t1 | MTR_2g438440 | 32.551 | 341 | 216 | 5 | 716 | 1050 | 350 | 682 | 9.15e-41 | 161 |
MS.gene95392.t1 | MTR_5g028130 | 32.209 | 326 | 179 | 8 | 748 | 1054 | 34 | 336 | 2.64e-40 | 152 |
MS.gene95392.t1 | MTR_2g017930 | 36.977 | 311 | 178 | 5 | 757 | 1059 | 357 | 657 | 3.59e-40 | 159 |
MS.gene95392.t1 | MTR_2g017930 | 27.397 | 219 | 140 | 5 | 27 | 237 | 13 | 220 | 1.06e-15 | 82.4 |
MS.gene95392.t1 | MTR_2g438700 | 30.833 | 360 | 224 | 8 | 701 | 1053 | 348 | 689 | 4.90e-40 | 159 |
MS.gene95392.t1 | MTR_2g438720 | 30.812 | 357 | 222 | 8 | 701 | 1050 | 350 | 688 | 2.11e-39 | 157 |
MS.gene95392.t1 | MTR_5g028450 | 33.887 | 301 | 182 | 6 | 759 | 1051 | 1 | 292 | 3.19e-38 | 145 |
MS.gene95392.t1 | MTR_2g438640 | 32.288 | 319 | 201 | 7 | 739 | 1050 | 377 | 687 | 2.43e-37 | 151 |
MS.gene95392.t1 | MTR_3g455790 | 32.517 | 286 | 184 | 4 | 755 | 1039 | 304 | 581 | 1.02e-35 | 144 |
MS.gene95392.t1 | MTR_2g438640 | 31.034 | 319 | 179 | 6 | 739 | 1050 | 377 | 661 | 3.09e-34 | 141 |
MS.gene95392.t1 | MTR_2g438760 | 28.286 | 350 | 239 | 6 | 707 | 1052 | 219 | 560 | 5.50e-32 | 133 |
MS.gene95392.t1 | MTR_6g017215 | 35.676 | 185 | 118 | 1 | 864 | 1048 | 6 | 189 | 4.42e-31 | 122 |
MS.gene95392.t1 | MTR_5g028930 | 33.708 | 267 | 141 | 8 | 758 | 1008 | 320 | 566 | 2.98e-30 | 128 |
MS.gene95392.t1 | MTR_3g452020 | 28.966 | 290 | 197 | 4 | 755 | 1043 | 129 | 410 | 7.01e-30 | 124 |
MS.gene95392.t1 | MTR_3g452020 | 28.966 | 290 | 197 | 4 | 755 | 1043 | 305 | 586 | 3.61e-29 | 124 |
MS.gene95392.t1 | MTR_2g438640 | 34.239 | 184 | 119 | 2 | 867 | 1050 | 403 | 584 | 1.95e-25 | 113 |
MS.gene95392.t1 | MTR_5g028690 | 34.416 | 154 | 101 | 0 | 858 | 1011 | 35 | 188 | 7.18e-22 | 96.3 |
MS.gene95392.t1 | MTR_5g028110 | 30.114 | 176 | 104 | 2 | 879 | 1054 | 17 | 173 | 2.78e-20 | 89.7 |
MS.gene95392.t1 | MTR_5g028900 | 36.620 | 142 | 78 | 3 | 879 | 1020 | 17 | 146 | 6.88e-19 | 85.1 |
MS.gene95392.t1 | MTR_5g028840 | 34.459 | 148 | 97 | 0 | 864 | 1011 | 2 | 149 | 5.87e-18 | 84.0 |
MS.gene95392.t1 | MTR_2g438470 | 36.207 | 116 | 69 | 4 | 828 | 940 | 384 | 497 | 1.31e-13 | 75.1 |
MS.gene95392.t1 | MTR_1g113760 | 25.081 | 307 | 210 | 8 | 754 | 1050 | 235 | 531 | 1.72e-13 | 75.1 |
MS.gene95392.t1 | MTR_2g438580 | 39.241 | 79 | 47 | 1 | 879 | 957 | 3 | 80 | 7.13e-13 | 65.5 |
MS.gene95392.t1 | MTR_7g100430 | 29.167 | 168 | 100 | 3 | 44 | 211 | 118 | 266 | 2.32e-11 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95392.t1 | AT3G18670 | 34.628 | 309 | 190 | 6 | 758 | 1063 | 292 | 591 | 9.75e-43 | 166 |
MS.gene95392.t1 | AT3G18670 | 34.628 | 309 | 190 | 6 | 758 | 1063 | 347 | 646 | 1.04e-42 | 167 |
MS.gene95392.t1 | AT3G18670 | 26.512 | 215 | 147 | 4 | 25 | 238 | 60 | 264 | 1.44e-15 | 82.0 |
MS.gene95392.t1 | AT5G04730 | 34.091 | 308 | 193 | 5 | 758 | 1062 | 297 | 597 | 1.51e-42 | 166 |
MS.gene95392.t1 | AT5G35810 | 33.876 | 307 | 187 | 7 | 755 | 1052 | 31 | 330 | 1.58e-42 | 159 |
MS.gene95392.t1 | AT5G04700 | 34.365 | 323 | 198 | 7 | 728 | 1045 | 334 | 647 | 7.93e-40 | 158 |
MS.gene95392.t1 | AT5G04690 | 33.333 | 312 | 182 | 8 | 747 | 1050 | 349 | 642 | 3.05e-38 | 153 |
MS.gene95392.t1 | AT5G04690 | 33.333 | 312 | 182 | 8 | 747 | 1050 | 335 | 628 | 3.22e-38 | 153 |
MS.gene95392.t1 | AT5G04690 | 33.333 | 312 | 182 | 8 | 747 | 1050 | 315 | 608 | 3.49e-38 | 152 |
MS.gene95392.t1 | AT3G54065 | 35.714 | 210 | 129 | 1 | 850 | 1053 | 8 | 217 | 7.14e-36 | 136 |
MS.gene95392.t1 | AT5G04680 | 33.133 | 332 | 198 | 9 | 728 | 1045 | 307 | 628 | 8.65e-33 | 136 |
MS.gene95392.t1 | AT5G04680 | 33.133 | 332 | 198 | 9 | 728 | 1045 | 321 | 642 | 1.06e-32 | 136 |
MS.gene95392.t1 | AT5G04680 | 33.133 | 332 | 198 | 9 | 728 | 1045 | 350 | 671 | 1.23e-32 | 136 |
MS.gene95392.t1 | AT5G04680 | 32.831 | 332 | 199 | 9 | 728 | 1045 | 198 | 519 | 1.31e-32 | 134 |
Find 172 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTATACCCTTGGCCTTTC+AGG | 0.066876 | 3.3:+47662979 | MS.gene95392:CDS |
ATCTATACCCTTGGCCTTTC+AGG | 0.066876 | 3.3:+47665905 | MS.gene95392:CDS |
ACACAATGTGCTTGTATTTA+TGG | 0.123891 | 3.3:-47668156 | None:intergenic |
TGAACGTGAGAAAGCAATTT+TGG | 0.159656 | 3.3:+47663829 | MS.gene95392:CDS |
TGAACGTGAGAAAGCAATTT+TGG | 0.159656 | 3.3:+47666755 | MS.gene95392:CDS |
TTTGCTTTGTCTTCAGTAAT+TGG | 0.161186 | 3.3:+47667956 | MS.gene95392:CDS |
ATTGATATTGATAACGAAAA+TGG | 0.164967 | 3.3:+47659813 | MS.gene95392:CDS |
TGAACTTGAGAGAGCAATTC+TGG | 0.199147 | 3.3:+47663775 | MS.gene95392:CDS |
TGAACTTGAGAGAGCAATTC+TGG | 0.199147 | 3.3:+47666701 | MS.gene95392:CDS |
GATTATGCTGATCCACTTAT+AGG | 0.199203 | 3.3:+47662613 | MS.gene95392:CDS |
GATTATGCTGATCCACTTAT+AGG | 0.199203 | 3.3:+47665539 | MS.gene95392:CDS |
TTCCATGTTAACTTCGTATA+TGG | 0.199761 | 3.3:-47663933 | None:intergenic |
TTCCATGTTAACTTCGTATA+TGG | 0.199761 | 3.3:-47666859 | None:intergenic |
CCATTATTGTTGAGGCATTA+AGG | 0.238998 | 3.3:+47663996 | MS.gene95392:CDS |
CCATTATTGTTGAGGCATTA+AGG | 0.238998 | 3.3:+47666922 | MS.gene95392:CDS |
TTCAGATGGCATTGAGATAT+TGG | 0.247899 | 3.3:-47662899 | None:intergenic |
TTCAGATGGCATTGAGATAT+TGG | 0.247899 | 3.3:-47665825 | None:intergenic |
TTTACCAAGGAAACTTCTTT+TGG | 0.277654 | 3.3:+47668060 | MS.gene95392:CDS |
TAAATCAATTCTGAAATCTT+TGG | 0.278020 | 3.3:-47668041 | None:intergenic |
GGTATACAATAGAAGGAAAA+TGG | 0.285007 | 3.3:+47659520 | MS.gene95392:CDS |
GTGGCATATAAAATGGTTTC+AGG | 0.287876 | 3.3:+47667088 | MS.gene95392:CDS |
CTTTACATTGATCTTCTTAG+AGG | 0.300527 | 3.3:+47668238 | MS.gene95392:CDS |
TAACATGTGTCGTAGTTCTT+TGG | 0.306623 | 3.3:-47662568 | None:intergenic |
TAACATGTGTCGTAGTTCTT+TGG | 0.306623 | 3.3:-47665494 | None:intergenic |
CCTTAATGCCTCAACAATAA+TGG | 0.309165 | 3.3:-47663996 | None:intergenic |
CCTTAATGCCTCAACAATAA+TGG | 0.309165 | 3.3:-47666922 | None:intergenic |
AAAACTATGCCACATGTCTT+TGG | 0.311259 | 3.3:+47662938 | MS.gene95392:CDS |
AAAACTATGCCACATGTCTT+TGG | 0.311259 | 3.3:+47665864 | MS.gene95392:CDS |
CTTAAATGTAAGAATGAAAA+AGG | 0.315632 | 3.3:+47659702 | MS.gene95392:CDS |
GTTTGAAGAATGCAATAAAA+AGG | 0.331294 | 3.3:+47664024 | MS.gene95392:CDS |
GTTTGAAGAATGCAATAAAA+AGG | 0.331294 | 3.3:+47666950 | MS.gene95392:CDS |
AAATGATGTGGCATATAAAA+TGG | 0.339034 | 3.3:+47667081 | MS.gene95392:CDS |
GTTCCAATCTCGATCACTTT+TGG | 0.346166 | 3.3:-47664113 | None:intergenic |
GTTCCAATCTCGATCACTTT+TGG | 0.346166 | 3.3:-47667039 | None:intergenic |
CATGAAGAACTGGTACAAAA+AGG | 0.353958 | 3.3:+47667782 | MS.gene95392:CDS |
GGACTGAATCCATGTTTGTT+TGG | 0.374549 | 3.3:-47661329 | None:intergenic |
CTCAAGGGGTATACAATAGA+AGG | 0.377741 | 3.3:+47659513 | MS.gene95392:CDS |
TCAGATGGCATTGAGATATT+GGG | 0.393126 | 3.3:-47662898 | None:intergenic |
TCAGATGGCATTGAGATATT+GGG | 0.393126 | 3.3:-47665824 | None:intergenic |
TATCTTCCTTATCCATCCCT+TGG | 0.399617 | 3.3:-47664066 | None:intergenic |
TATCTTCCTTATCCATCCCT+TGG | 0.399617 | 3.3:-47666992 | None:intergenic |
TGTTTCTTGCTGCATTGTCT+TGG | 0.401537 | 3.3:+47659847 | MS.gene95392:CDS |
TACTTGTAGCAGTTGAAAAC+AGG | 0.401708 | 3.3:+47663969 | MS.gene95392:CDS |
TACTTGTAGCAGTTGAAAAC+AGG | 0.401708 | 3.3:+47666895 | MS.gene95392:CDS |
AAGATCTTATTAGAAGCAAT+GGG | 0.403706 | 3.3:+47659952 | MS.gene95392:CDS |
AAAGCGGATGCAAGATGATA+TGG | 0.408283 | 3.3:+47661387 | MS.gene95392:CDS |
GATCGAGATTGGAACATATC+TGG | 0.414209 | 3.3:+47664121 | MS.gene95392:CDS |
GATCGAGATTGGAACATATC+TGG | 0.414209 | 3.3:+47667047 | MS.gene95392:CDS |
GTGCCAAAGTCACGTGATAA+GGG | 0.414563 | 3.3:+47668274 | MS.gene95392:CDS |
AGTGCCAAAGTCACGTGATA+AGG | 0.414651 | 3.3:+47668273 | MS.gene95392:CDS |
AGATGAAGCAAAAGCACAAA+TGG | 0.424240 | 3.3:+47663251 | MS.gene95392:CDS |
AGATGAAGCAAAAGCACAAA+TGG | 0.424240 | 3.3:+47666177 | MS.gene95392:CDS |
GTTCCCAAGTACGATTCATA+TGG | 0.424712 | 3.3:-47663307 | None:intergenic |
GTTCCCAAGTACGATTCATA+TGG | 0.424712 | 3.3:-47666233 | None:intergenic |
ACCCTTGGCCTTTCAGGAGT+TGG | 0.424978 | 3.3:+47662985 | MS.gene95392:CDS |
ACCCTTGGCCTTTCAGGAGT+TGG | 0.424978 | 3.3:+47665911 | MS.gene95392:CDS |
AATCCCAAAAGAAGTTTCCT+TGG | 0.430549 | 3.3:-47668064 | None:intergenic |
CAAGAAATCACATGAAGAAC+TGG | 0.431741 | 3.3:+47667772 | MS.gene95392:CDS |
GATATATGTGAATGTATCAT+AGG | 0.438316 | 3.3:+47659765 | MS.gene95392:CDS |
ATCTCTATTGTGCTAAACTT+AGG | 0.441348 | 3.3:-47659573 | None:intergenic |
GCAAGATGATATGGTGGAAG+AGG | 0.443345 | 3.3:+47661396 | MS.gene95392:CDS |
TTTGGAATGTCGATAAGCTC+TGG | 0.443635 | 3.3:-47661311 | None:intergenic |
AAGAAGCAATCGAATATTAT+CGG | 0.444958 | 3.3:+47662509 | MS.gene95392:CDS |
AAGAAGCAATCGAATATTAT+CGG | 0.444958 | 3.3:+47665435 | MS.gene95392:CDS |
AAAGCGATTGTGGTGCTGAT+AGG | 0.446168 | 3.3:+47659913 | MS.gene95392:CDS |
CTACCAAAAGTGATCGAGAT+TGG | 0.451436 | 3.3:+47664110 | MS.gene95392:CDS |
CTACCAAAAGTGATCGAGAT+TGG | 0.451436 | 3.3:+47667036 | MS.gene95392:CDS |
CTCTAAAACTTCTTGCTACT+AGG | 0.452007 | 3.3:+47661351 | MS.gene95392:CDS |
GCAGGCCTTCCTTCCAATGC+TGG | 0.454814 | 3.3:-47667923 | None:intergenic |
AGGAAAATGGAAAGAGGTTG+AGG | 0.456125 | 3.3:+47659533 | MS.gene95392:CDS |
TGCTTAGCAAAACCTATAAG+TGG | 0.456542 | 3.3:-47662625 | None:intergenic |
TGCTTAGCAAAACCTATAAG+TGG | 0.456542 | 3.3:-47665551 | None:intergenic |
TATGAATCGTACTTGGGAAC+TGG | 0.457339 | 3.3:+47663310 | MS.gene95392:CDS |
TATGAATCGTACTTGGGAAC+TGG | 0.457339 | 3.3:+47666236 | MS.gene95392:CDS |
AGGAGAAGGTGGTGAAAGGA+AGG | 0.461415 | 3.3:+47659785 | MS.gene95392:CDS |
GGCGGCAATAGAAGTGAAAC+AGG | 0.462036 | 3.3:+47667896 | MS.gene95392:CDS |
TATGGTCAATCAGAAAGAAA+TGG | 0.463630 | 3.3:-47668138 | None:intergenic |
ATCACGTGACTTTGGCACTT+TGG | 0.464104 | 3.3:-47668269 | None:intergenic |
AAAGATCTTATTAGAAGCAA+TGG | 0.468204 | 3.3:+47659951 | MS.gene95392:CDS |
GTTCTAACTGTGAAATGCTC+TGG | 0.475307 | 3.3:-47667716 | None:intergenic |
AAATGGCATAGTTGAAATAG+TGG | 0.476650 | 3.3:+47663883 | MS.gene95392:CDS |
AAATGGCATAGTTGAAATAG+TGG | 0.476650 | 3.3:+47666809 | MS.gene95392:CDS |
AAATCCATATGAATCGTACT+TGG | 0.478104 | 3.3:+47663303 | MS.gene95392:CDS |
AAATCCATATGAATCGTACT+TGG | 0.478104 | 3.3:+47666229 | MS.gene95392:CDS |
TTTGCATATATCTATACCCT+TGG | 0.478659 | 3.3:+47662970 | MS.gene95392:CDS |
TTTGCATATATCTATACCCT+TGG | 0.478659 | 3.3:+47665896 | MS.gene95392:CDS |
CTAAGAAGATCAATGTAAAG+TGG | 0.485547 | 3.3:-47668235 | None:intergenic |
TTGTTGAGGCATTAAGGAAA+CGG | 0.490350 | 3.3:+47664002 | MS.gene95392:CDS |
TTGTTGAGGCATTAAGGAAA+CGG | 0.490350 | 3.3:+47666928 | MS.gene95392:CDS |
TGAAACAGGTGAACCAGCAT+TGG | 0.494721 | 3.3:+47667910 | MS.gene95392:CDS |
CACATGGATCAGTATACTAA+AGG | 0.504814 | 3.3:+47667686 | MS.gene95392:intron |
ACTACTTCTAATGCTGCAAA+TGG | 0.506668 | 3.3:+47662667 | MS.gene95392:CDS |
ACTACTTCTAATGCTGCAAA+TGG | 0.506668 | 3.3:+47665593 | MS.gene95392:CDS |
TCATAGGAGAAGGTGGTGAA+AGG | 0.507023 | 3.3:+47659781 | MS.gene95392:CDS |
TTCGAGAAGTGAGTATGGAC+AGG | 0.510529 | 3.3:-47668012 | None:intergenic |
GTATTCTTCACTGTGCCATC+CGG | 0.511652 | 3.3:+47659979 | MS.gene95392:CDS |
TCTAATCCAAGGGATGGATA+AGG | 0.517457 | 3.3:+47664060 | MS.gene95392:CDS |
TCTAATCCAAGGGATGGATA+AGG | 0.517457 | 3.3:+47666986 | MS.gene95392:CDS |
CTTGATGCTGCAAGGTGCAA+AGG | 0.522226 | 3.3:-47659732 | None:intergenic |
TGAATCCTCTTGATGCTGCA+AGG | 0.522236 | 3.3:-47659740 | None:intergenic |
GTGAACCAGCATTGGAAGGA+AGG | 0.530748 | 3.3:+47667918 | MS.gene95392:CDS |
GGAAGAAGCTTGCGTTCAGA+TGG | 0.532689 | 3.3:-47662913 | None:intergenic |
GGAAGAAGCTTGCGTTCAGA+TGG | 0.532689 | 3.3:-47665839 | None:intergenic |
GTTCCACTCACATCTCGTGT+TGG | 0.535441 | 3.3:-47663340 | None:intergenic |
GTTCCACTCACATCTCGTGT+TGG | 0.535441 | 3.3:-47666266 | None:intergenic |
GTTTCACTTCTATTGCCGCC+TGG | 0.540058 | 3.3:-47667893 | None:intergenic |
AGCGACGAACATTGCAACAA+TGG | 0.549560 | 3.3:-47668104 | None:intergenic |
ATATTTGATAATCTAATCCA+AGG | 0.560831 | 3.3:+47664049 | MS.gene95392:CDS |
ATATTTGATAATCTAATCCA+AGG | 0.560831 | 3.3:+47666975 | MS.gene95392:CDS |
AAATCAAGTAAAAGCGATTG+TGG | 0.561762 | 3.3:+47659903 | MS.gene95392:CDS |
TATATGCCACATCATTTGCA+AGG | 0.563049 | 3.3:-47667075 | None:intergenic |
TACCAACTCCTGAAAGGCCA+AGG | 0.563628 | 3.3:-47662987 | None:intergenic |
TACCAACTCCTGAAAGGCCA+AGG | 0.563628 | 3.3:-47665913 | None:intergenic |
TTGCACCTTGCAGCATCAAG+AGG | 0.564363 | 3.3:+47659735 | MS.gene95392:CDS |
TTCTTCACTGTGCCATCCGG+AGG | 0.565693 | 3.3:+47659982 | MS.gene95392:CDS |
AATAGAAGGAAAATGGAAAG+AGG | 0.566628 | 3.3:+47659527 | MS.gene95392:CDS |
CAGGAGAACCATTATTGTTG+AGG | 0.568188 | 3.3:+47663988 | MS.gene95392:CDS |
CAGGAGAACCATTATTGTTG+AGG | 0.568188 | 3.3:+47666914 | MS.gene95392:CDS |
GCTACTGCATACAAAGTCAC+AGG | 0.569943 | 3.3:-47668205 | None:intergenic |
AATCTTAAGTCACAATAATG+AGG | 0.571757 | 3.3:+47659674 | MS.gene95392:CDS |
ATTTCAGAATTGATTTACCA+AGG | 0.574578 | 3.3:+47668047 | MS.gene95392:CDS |
AGCAAGTGACTGTATAAATG+AGG | 0.575232 | 3.3:-47668180 | None:intergenic |
GCTACATCAAGCACTGTACC+AGG | 0.575420 | 3.3:+47667875 | MS.gene95392:CDS |
AAAGCAAATGCATCAAATGC+AGG | 0.578955 | 3.3:-47667941 | None:intergenic |
GACAATGCAGCAAGAAACAA+AGG | 0.580270 | 3.3:-47659843 | None:intergenic |
TGTGAATGTATCATAGGAGA+AGG | 0.583544 | 3.3:+47659771 | MS.gene95392:CDS |
TTCCATATACGAAGTTAACA+TGG | 0.586336 | 3.3:+47663931 | MS.gene95392:CDS |
TTCCATATACGAAGTTAACA+TGG | 0.586336 | 3.3:+47666857 | MS.gene95392:CDS |
TGATAATCTAATCCAAGGGA+TGG | 0.587484 | 3.3:+47664054 | MS.gene95392:CDS |
TGATAATCTAATCCAAGGGA+TGG | 0.587484 | 3.3:+47666980 | MS.gene95392:CDS |
GTGTCCAGAGGACAAGCTCA+AGG | 0.589816 | 3.3:+47659497 | MS.gene95392:intron |
GTGCTGCCTTGCAAATGATG+TGG | 0.592481 | 3.3:+47667069 | MS.gene95392:CDS |
TGTCCAGAGGACAAGCTCAA+GGG | 0.592832 | 3.3:+47659498 | MS.gene95392:intron |
GACACTTACCAACTCCTGAA+AGG | 0.593684 | 3.3:-47662993 | None:intergenic |
GACACTTACCAACTCCTGAA+AGG | 0.593684 | 3.3:-47665919 | None:intergenic |
AATCCATATGAATCGTACTT+GGG | 0.593781 | 3.3:+47663304 | MS.gene95392:CDS |
AATCCATATGAATCGTACTT+GGG | 0.593781 | 3.3:+47666230 | MS.gene95392:CDS |
ACAGGTGAACCAGCATTGGA+AGG | 0.599054 | 3.3:+47667914 | MS.gene95392:CDS |
TACAGTGCTTGATGTAGCGA+AGG | 0.603317 | 3.3:-47667870 | None:intergenic |
ATCGACATTCCAAACAAACA+TGG | 0.609245 | 3.3:+47661320 | MS.gene95392:CDS |
TGCCAAAGTCACGTGATAAG+GGG | 0.611312 | 3.3:+47668275 | MS.gene95392:CDS |
TGATGTAGCGAAGGAAACAC+TGG | 0.616584 | 3.3:-47667861 | None:intergenic |
AATAAGGGAGAGAAACACAT+AGG | 0.616620 | 3.3:+47662856 | MS.gene95392:CDS |
AATAAGGGAGAGAAACACAT+AGG | 0.616620 | 3.3:+47665782 | MS.gene95392:CDS |
GCCAAAGTCACGTGATAAGG+GGG | 0.625779 | 3.3:+47668276 | MS.gene95392:CDS |
CTATCAACAGGTATACCTGT+GGG | 0.634241 | 3.3:+47662472 | MS.gene95392:intron |
CTATCAACAGGTATACCTGT+GGG | 0.634241 | 3.3:+47665398 | MS.gene95392:intron |
AGCAGCACATACATCACGGA+AGG | 0.637337 | 3.3:+47658168 | MS.gene95392:CDS |
GTCCAGAGGACAAGCTCAAG+GGG | 0.642884 | 3.3:+47659499 | MS.gene95392:intron |
TATTTGATAATCTAATCCAA+GGG | 0.643118 | 3.3:+47664050 | MS.gene95392:CDS |
TATTTGATAATCTAATCCAA+GGG | 0.643118 | 3.3:+47666976 | MS.gene95392:CDS |
AGGCCCTCAGCCTTCAAAAG+CGG | 0.644167 | 3.3:+47661371 | MS.gene95392:CDS |
AAGCAAAAGCACAAATGGAG+TGG | 0.647330 | 3.3:+47663256 | MS.gene95392:CDS |
AAGCAAAAGCACAAATGGAG+TGG | 0.647330 | 3.3:+47666182 | MS.gene95392:CDS |
CTTAAGTCACAATAATGAGG+AGG | 0.647920 | 3.3:+47659677 | MS.gene95392:CDS |
CAGAGGAACAGCACTACACG+TGG | 0.648901 | 3.3:+47659605 | MS.gene95392:CDS |
TCTTCACTGTGCCATCCGGA+GGG | 0.650511 | 3.3:+47659983 | MS.gene95392:CDS |
TGACAGCAGCACATACATCA+CGG | 0.654763 | 3.3:+47658164 | MS.gene95392:CDS |
ACCAACTCCTGAAAGGCCAA+GGG | 0.656443 | 3.3:-47662986 | None:intergenic |
ACCAACTCCTGAAAGGCCAA+GGG | 0.656443 | 3.3:-47665912 | None:intergenic |
TAGCGAAGGAAACACTGGCA+AGG | 0.660756 | 3.3:-47667856 | None:intergenic |
GAATGTATCATAGGAGAAGG+TGG | 0.662333 | 3.3:+47659774 | MS.gene95392:CDS |
CTACTGCATACAAAGTCACA+GGG | 0.663393 | 3.3:-47668204 | None:intergenic |
ATAGAGATCAACAAAAGCAG+AGG | 0.666126 | 3.3:+47659588 | MS.gene95392:CDS |
ACTATCAACAGGTATACCTG+TGG | 0.673566 | 3.3:+47662471 | MS.gene95392:intron |
ACTATCAACAGGTATACCTG+TGG | 0.673566 | 3.3:+47665397 | MS.gene95392:intron |
GCGGATGCAAGATGATATGG+TGG | 0.674620 | 3.3:+47661390 | MS.gene95392:CDS |
TGCAGGAGATAACAACAATG+AGG | 0.675357 | 3.3:+47663699 | MS.gene95392:intron |
TGCAGGAGATAACAACAATG+AGG | 0.675357 | 3.3:+47666625 | MS.gene95392:intron |
GGCAGTAAATGATGACAATG+TGG | 0.727319 | 3.3:+47659626 | MS.gene95392:CDS |
AGATCTTATTAGAAGCAATG+GGG | 0.730221 | 3.3:+47659953 | MS.gene95392:CDS |
ACATCAAGCACTGTACCAGG+CGG | 0.758516 | 3.3:+47667878 | MS.gene95392:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 47658147 | 47668309 | 47658147 | ID=MS.gene95392 |
chr3.3 | mRNA | 47658147 | 47668309 | 47658147 | ID=MS.gene95392.t1;Parent=MS.gene95392 |
chr3.3 | exon | 47658147 | 47658189 | 47658147 | ID=MS.gene95392.t1.exon1;Parent=MS.gene95392.t1 |
chr3.3 | CDS | 47658147 | 47658189 | 47658147 | ID=cds.MS.gene95392.t1;Parent=MS.gene95392.t1 |
chr3.3 | exon | 47659505 | 47660014 | 47659505 | ID=MS.gene95392.t1.exon2;Parent=MS.gene95392.t1 |
chr3.3 | CDS | 47659505 | 47660014 | 47659505 | ID=cds.MS.gene95392.t1;Parent=MS.gene95392.t1 |
chr3.3 | exon | 47661282 | 47661431 | 47661282 | ID=MS.gene95392.t1.exon3;Parent=MS.gene95392.t1 |
chr3.3 | CDS | 47661282 | 47661431 | 47661282 | ID=cds.MS.gene95392.t1;Parent=MS.gene95392.t1 |
chr3.3 | exon | 47662482 | 47662688 | 47662482 | ID=MS.gene95392.t1.exon4;Parent=MS.gene95392.t1 |
chr3.3 | CDS | 47662482 | 47662688 | 47662482 | ID=cds.MS.gene95392.t1;Parent=MS.gene95392.t1 |
chr3.3 | exon | 47662848 | 47663006 | 47662848 | ID=MS.gene95392.t1.exon5;Parent=MS.gene95392.t1 |
chr3.3 | CDS | 47662848 | 47663006 | 47662848 | ID=cds.MS.gene95392.t1;Parent=MS.gene95392.t1 |
chr3.3 | exon | 47663233 | 47663351 | 47663233 | ID=MS.gene95392.t1.exon6;Parent=MS.gene95392.t1 |
chr3.3 | CDS | 47663233 | 47663351 | 47663233 | ID=cds.MS.gene95392.t1;Parent=MS.gene95392.t1 |
chr3.3 | exon | 47663704 | 47664142 | 47663704 | ID=MS.gene95392.t1.exon7;Parent=MS.gene95392.t1 |
chr3.3 | CDS | 47663704 | 47664142 | 47663704 | ID=cds.MS.gene95392.t1;Parent=MS.gene95392.t1 |
chr3.3 | exon | 47665408 | 47665614 | 47665408 | ID=MS.gene95392.t1.exon8;Parent=MS.gene95392.t1 |
chr3.3 | CDS | 47665408 | 47665614 | 47665408 | ID=cds.MS.gene95392.t1;Parent=MS.gene95392.t1 |
chr3.3 | exon | 47665774 | 47665932 | 47665774 | ID=MS.gene95392.t1.exon9;Parent=MS.gene95392.t1 |
chr3.3 | CDS | 47665774 | 47665932 | 47665774 | ID=cds.MS.gene95392.t1;Parent=MS.gene95392.t1 |
chr3.3 | exon | 47666159 | 47666277 | 47666159 | ID=MS.gene95392.t1.exon10;Parent=MS.gene95392.t1 |
chr3.3 | CDS | 47666159 | 47666277 | 47666159 | ID=cds.MS.gene95392.t1;Parent=MS.gene95392.t1 |
chr3.3 | exon | 47666630 | 47667109 | 47666630 | ID=MS.gene95392.t1.exon11;Parent=MS.gene95392.t1 |
chr3.3 | CDS | 47666630 | 47667109 | 47666630 | ID=cds.MS.gene95392.t1;Parent=MS.gene95392.t1 |
chr3.3 | exon | 47667698 | 47668309 | 47667698 | ID=MS.gene95392.t1.exon12;Parent=MS.gene95392.t1 |
chr3.3 | CDS | 47667698 | 47668309 | 47667698 | ID=cds.MS.gene95392.t1;Parent=MS.gene95392.t1 |
Gene Sequence |
Protein sequence |