Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95405.t1 | XP_003616940.1 | 92.3 | 1115 | 86 | 0 | 1 | 1115 | 25 | 1139 | 0.00E+00 | 1998.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95405.t1 | Q0WVF8 | 45.0 | 1130 | 579 | 11 | 3 | 1113 | 28 | 1133 | 3.0e-260 | 899.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95405.t1 | G7K7L4 | 92.3 | 1115 | 86 | 0 | 1 | 1115 | 25 | 1139 | 0.0e+00 | 1998.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95405 | MS.gene073095 | PPI |
| MS.gene95405 | MS.gene91488 | PPI |
| MS.gene94650 | MS.gene95405 | PPI |
| MS.gene35361 | MS.gene95405 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95405.t1 | MTR_5g085950 | 92.287 | 1115 | 86 | 0 | 1 | 1115 | 25 | 1139 | 0.0 | 2040 |
| MS.gene95405.t1 | MTR_2g100870 | 86.201 | 1116 | 153 | 1 | 1 | 1115 | 25 | 1140 | 0.0 | 1919 |
| MS.gene95405.t1 | MTR_5g055460 | 77.083 | 48 | 11 | 0 | 151 | 198 | 17 | 64 | 5.41e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95405.t1 | AT5G48120 | 44.907 | 1129 | 581 | 12 | 3 | 1113 | 28 | 1133 | 0.0 | 897 |
| MS.gene95405.t1 | AT5G48120 | 44.907 | 1129 | 581 | 12 | 3 | 1113 | 28 | 1133 | 0.0 | 897 |
| MS.gene95405.t1 | AT5G48120 | 44.907 | 1129 | 581 | 12 | 3 | 1113 | 28 | 1133 | 0.0 | 897 |
Find 205 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGAAGCCCTCTTATATT+TGG | 0.180661 | 5.4:-67954457 | None:intergenic |
| AAAATACTGAAGAGCATAAA+TGG | 0.184927 | 5.4:+67954887 | MS.gene95405:CDS |
| GCAGCTCATGCCAGTTCTTC+TGG | 0.201051 | 5.4:+67955528 | MS.gene95405:intron |
| ATGTTCTCAAATGTTGATTT+TGG | 0.210187 | 5.4:-67953065 | None:intergenic |
| CTCCACCAAATAGGTATTTA+TGG | 0.212231 | 5.4:-67951908 | None:intergenic |
| ACTAAGAATGATGGATAGTT+TGG | 0.215757 | 5.4:+67952227 | MS.gene95405:CDS |
| TGAAACTGCTGTTCAGCTTT+TGG | 0.218439 | 5.4:+67953601 | MS.gene95405:CDS |
| CAAAATATGTTGGGGCTATT+TGG | 0.229017 | 5.4:+67951869 | MS.gene95405:CDS |
| TCAATTACAACTTCATTCTT+TGG | 0.231489 | 5.4:-67951976 | None:intergenic |
| CATAAGACGTTAAATTTCTA+TGG | 0.235132 | 5.4:-67953580 | None:intergenic |
| ACTTCTAATTTGAGTGAAAA+AGG | 0.246410 | 5.4:-67953278 | None:intergenic |
| TCCCCATTGTGCAGCTTGTT+CGG | 0.273499 | 5.4:+67956508 | MS.gene95405:intron |
| ATATTTGGAACGTGTGCTTT+GGG | 0.276627 | 5.4:-67954442 | None:intergenic |
| TGTTCCAGTTGCACAGGCTT+TGG | 0.282641 | 5.4:+67954510 | MS.gene95405:CDS |
| GTTCCAGTTGCACAGGCTTT+GGG | 0.289048 | 5.4:+67954511 | MS.gene95405:CDS |
| CCCCATTGTGCAGCTTGTTC+GGG | 0.296076 | 5.4:+67956509 | MS.gene95405:intron |
| AGACACCATAAATACCTATT+TGG | 0.302273 | 5.4:+67951903 | MS.gene95405:CDS |
| AACTTGCAGGTTCAATCTTT+AGG | 0.308558 | 5.4:+67949072 | MS.gene95405:CDS |
| TTGAAATCATTATTTCATAT+TGG | 0.321286 | 5.4:+67953152 | MS.gene95405:CDS |
| GGAGGATTGCCATTGACTTT+TGG | 0.329070 | 5.4:+67954349 | MS.gene95405:CDS |
| AAAACAAGCATTAAACATTC+TGG | 0.332262 | 5.4:-67950085 | None:intergenic |
| TTCTCTGCAGGTTTCAAGCT+TGG | 0.333213 | 5.4:+67947671 | None:intergenic |
| ATAGCTTGGTTGGGTTCTTC+AGG | 0.334626 | 5.4:+67948689 | MS.gene95405:CDS |
| TATATTTGGAACGTGTGCTT+TGG | 0.335893 | 5.4:-67954443 | None:intergenic |
| TTAGAAGTATTATCTGATAT+TGG | 0.336307 | 5.4:+67953293 | MS.gene95405:CDS |
| AGAGCATAAATGGGATCTTT+TGG | 0.340308 | 5.4:+67954897 | MS.gene95405:CDS |
| GAGCCCAAAGCCTGTGCAAC+TGG | 0.345968 | 5.4:-67954514 | None:intergenic |
| GTTTCAAGCTTGGATGCAAT+TGG | 0.346172 | 5.4:+67947681 | MS.gene95405:CDS |
| TTCTTCAGGAATTCTTCTTC+TGG | 0.346745 | 5.4:+67948615 | MS.gene95405:intron |
| TGCACAGGCTTTGGGCTCTA+TGG | 0.350591 | 5.4:+67954519 | MS.gene95405:CDS |
| GGGCTGGAAAGAGCTATATT+TGG | 0.357872 | 5.4:+67953353 | MS.gene95405:CDS |
| TGGGTTGCTTGGAACTTATA+AGG | 0.358042 | 5.4:+67948983 | MS.gene95405:CDS |
| GAAATCTGGCTCCACCAAAT+AGG | 0.361190 | 5.4:-67951917 | None:intergenic |
| AGAGTGTGCTCTTCCAAGTA+TGG | 0.362079 | 5.4:+67951832 | MS.gene95405:CDS |
| CATACAAGATATCTTTATCT+TGG | 0.362497 | 5.4:-67955579 | None:intergenic |
| CTGGGCAGGATCCTTGAAAA+TGG | 0.368274 | 5.4:+67953839 | MS.gene95405:intron |
| ACTTTGAAACACGGCATTGC+AGG | 0.370408 | 5.4:-67952199 | None:intergenic |
| AGTTCCTTGCCTTTCATTGA+AGG | 0.373455 | 5.4:+67954856 | MS.gene95405:CDS |
| ACTTCAACAAAACAATACTA+TGG | 0.376528 | 5.4:+67953120 | MS.gene95405:CDS |
| TGCCGATTCAGTTGCCTCAT+TGG | 0.376819 | 5.4:+67949418 | MS.gene95405:CDS |
| TCACCTCCAATGTATATATC+AGG | 0.379956 | 5.4:-67952486 | None:intergenic |
| AGTGAAGGGCTTGCAGATTC+TGG | 0.384723 | 5.4:+67953013 | MS.gene95405:intron |
| CCAATGTATATATCAGGATC+AGG | 0.387226 | 5.4:-67952480 | None:intergenic |
| ATCTGAGGAACTATGAAGTA+TGG | 0.392406 | 5.4:-67952403 | None:intergenic |
| GTAGTTCTATACAGAGATAA+AGG | 0.399321 | 5.4:-67952323 | None:intergenic |
| ATGCAGTTTGTGGGCTCTCA+TGG | 0.409981 | 5.4:+67954746 | MS.gene95405:CDS |
| AAAATATTGAGCAATGGCTT+TGG | 0.410682 | 5.4:-67949043 | None:intergenic |
| CTAAGAATGATGGATAGTTT+GGG | 0.411335 | 5.4:+67952228 | MS.gene95405:CDS |
| ATCTTTCAGCTTAATGATGT+TGG | 0.411614 | 5.4:+67954328 | MS.gene95405:CDS |
| TATTTATAATCAGGCAGATT+GGG | 0.419519 | 5.4:+67948939 | MS.gene95405:intron |
| TAATTCTCCATTTGAAGAAA+AGG | 0.421895 | 5.4:+67953931 | MS.gene95405:CDS |
| AGAGAATCGCAAAATATGTT+GGG | 0.432517 | 5.4:+67951860 | MS.gene95405:CDS |
| CGCAAAGAGATGACCTATCT+AGG | 0.434127 | 5.4:+67950511 | MS.gene95405:CDS |
| CACACCTCTTGACCGAATTA+CGG | 0.435522 | 5.4:-67947901 | None:intergenic |
| CTTCAACAAATACCGTAATT+CGG | 0.440067 | 5.4:+67947889 | MS.gene95405:CDS |
| GACAAGCAATCCAGAAGAAC+TGG | 0.440725 | 5.4:-67955538 | None:intergenic |
| CTTCAAACCAATGCAGTTTG+TGG | 0.440773 | 5.4:+67954736 | MS.gene95405:CDS |
| TATACTGAATGAAGCTAAAG+AGG | 0.446254 | 5.4:+67955409 | MS.gene95405:CDS |
| TAGCTTGGTTGGGTTCTTCA+GGG | 0.446497 | 5.4:+67948690 | MS.gene95405:CDS |
| CAATGCAACAAGACATTGAA+TGG | 0.448134 | 5.4:-67956538 | None:intergenic |
| AGGAATTCTTCTTCTGGCAG+AGG | 0.451191 | 5.4:+67948621 | MS.gene95405:intron |
| AAAACTATACATAGCTTGGT+TGG | 0.451872 | 5.4:+67948679 | MS.gene95405:CDS |
| AGTGATGTGGGTATGGTAAC+GGG | 0.457512 | 5.4:+67949012 | MS.gene95405:CDS |
| GGGTGTTGTTCCAGTTGCAC+AGG | 0.458087 | 5.4:+67954504 | MS.gene95405:CDS |
| AAACTCATTTCAAAATTCAA+TGG | 0.459754 | 5.4:+67954547 | MS.gene95405:CDS |
| GTTAACTGAATGGGAAAGTA+AGG | 0.461803 | 5.4:-67950196 | None:intergenic |
| CAAGATAAAGATATCTTGTA+TGG | 0.465086 | 5.4:+67955580 | MS.gene95405:CDS |
| AATCCATGCAATTTCCTGCC+TGG | 0.465330 | 5.4:-67953907 | None:intergenic |
| GCACACGTTCCAAATATAAG+AGG | 0.465840 | 5.4:+67954448 | MS.gene95405:CDS |
| GCTAGAGTAAAAGAGAAATC+TGG | 0.469250 | 5.4:-67951931 | None:intergenic |
| AAGAAGAAAGTTTCTGAAGA+AGG | 0.469520 | 5.4:-67951649 | None:intergenic |
| GACATCTCCCGTAGGGATGA+AGG | 0.469709 | 5.4:+67954379 | MS.gene95405:CDS |
| CGATTATATCCTGATCCATC+TGG | 0.470202 | 5.4:+67950130 | MS.gene95405:CDS |
| TTTCAAGCTTGGATGCAATT+GGG | 0.472760 | 5.4:+67947682 | MS.gene95405:CDS |
| GGGCTCTCATGGATTGGAAA+AGG | 0.473984 | 5.4:+67954757 | MS.gene95405:CDS |
| TAGAACTACTAGCAGGATGC+AGG | 0.474197 | 5.4:+67952337 | MS.gene95405:CDS |
| TTATCTGATATTGGCATGAC+TGG | 0.475419 | 5.4:+67953302 | MS.gene95405:CDS |
| TGAGATCAACTGCAGAAAGA+TGG | 0.476147 | 5.4:-67955043 | None:intergenic |
| TCATATGAACCTTCAATGAA+AGG | 0.477363 | 5.4:-67954865 | None:intergenic |
| TTCAAACCAATGCAGTTTGT+GGG | 0.477711 | 5.4:+67954737 | MS.gene95405:CDS |
| ATATTTATAATCAGGCAGAT+TGG | 0.478388 | 5.4:+67948938 | MS.gene95405:intron |
| GAAAATTTCATGCCACGATA+CGG | 0.478982 | 5.4:+67954983 | MS.gene95405:CDS |
| TATGTGATGGATCAAGTAAT+GGG | 0.481857 | 5.4:+67954662 | MS.gene95405:CDS |
| GATTCTCTCTGATCCATACT+TGG | 0.482212 | 5.4:-67951845 | None:intergenic |
| AAACTATACATAGCTTGGTT+GGG | 0.482444 | 5.4:+67948680 | MS.gene95405:CDS |
| CTGTCAAATGTCGGCAAGCA+TGG | 0.485151 | 5.4:+67956853 | MS.gene95405:CDS |
| GAGGAAAAGTGATGTGGGTA+TGG | 0.486473 | 5.4:+67949005 | MS.gene95405:CDS |
| TTTCAGCTTAATGATGTTGG+AGG | 0.487070 | 5.4:+67954331 | MS.gene95405:CDS |
| ACATCAAAATCGAAGACTCC+TGG | 0.487975 | 5.4:-67956997 | None:intergenic |
| CTGCAGAAAGATGGGCATCA+TGG | 0.490694 | 5.4:-67955034 | None:intergenic |
| TGTTAGTAACATTGATGGCT+CGG | 0.491260 | 5.4:+67952257 | MS.gene95405:CDS |
| CAAAATTTAGGTTAGAGAGT+TGG | 0.491451 | 5.4:+67947854 | MS.gene95405:intron |
| TACCAATGAGGCAACTGAAT+CGG | 0.492157 | 5.4:-67949420 | None:intergenic |
| GCAGTACGAGGTGCACTTGT+GGG | 0.492437 | 5.4:+67948964 | MS.gene95405:CDS |
| CACGGCATTGCAGGAAGGAA+TGG | 0.494774 | 5.4:-67952190 | None:intergenic |
| AATCTTTAGGAATGTATGAC+AGG | 0.496654 | 5.4:+67949085 | MS.gene95405:CDS |
| GAGAGAATCGCAAAATATGT+TGG | 0.497138 | 5.4:+67951859 | MS.gene95405:CDS |
| GTTTGTGGGCTCTCATGGAT+TGG | 0.499724 | 5.4:+67954751 | MS.gene95405:CDS |
| TGGGTTCTTCAGGGAAAGAC+TGG | 0.501067 | 5.4:+67948699 | MS.gene95405:CDS |
| GCAAATAGACCAGATGGATC+AGG | 0.505582 | 5.4:-67950139 | None:intergenic |
| TGCAGCTATAGATGCAGAAA+GGG | 0.509949 | 5.4:+67950060 | MS.gene95405:CDS |
| AACATCATTAAGCTGAAAGA+TGG | 0.513197 | 5.4:-67954326 | None:intergenic |
| GCAGGAAGGAATGGAAGTCT+TGG | 0.514261 | 5.4:-67952181 | None:intergenic |
| CTTACATGTGTTAACTGAAT+GGG | 0.515810 | 5.4:-67950205 | None:intergenic |
| AAATACTGAAGAGCATAAAT+GGG | 0.516826 | 5.4:+67954888 | MS.gene95405:CDS |
| GAGATCAACTGCAGAAAGAT+GGG | 0.518004 | 5.4:-67955042 | None:intergenic |
| GTTGATATTTGGAACCAGGC+AGG | 0.518291 | 5.4:+67953893 | MS.gene95405:CDS |
| AGGTGCACTTGTGGGTTGCT+TGG | 0.522192 | 5.4:+67948972 | MS.gene95405:CDS |
| GAAAGTTTCTGAAGAAGGAG+AGG | 0.523072 | 5.4:-67951644 | None:intergenic |
| CCTGATCCTGATATATACAT+TGG | 0.526026 | 5.4:+67952480 | MS.gene95405:CDS |
| CACAATAAGCTGCTGAAGGA+GGG | 0.526498 | 5.4:-67952007 | None:intergenic |
| TTCTGTTGATATTTGGAACC+AGG | 0.527505 | 5.4:+67953889 | MS.gene95405:CDS |
| AGAAGGAGAGGAATAACAAA+TGG | 0.529006 | 5.4:-67951632 | None:intergenic |
| GCTTACATGTGTTAACTGAA+TGG | 0.529424 | 5.4:-67950206 | None:intergenic |
| TATATTTGGCAATCTTTCTG+AGG | 0.533100 | 5.4:+67953367 | MS.gene95405:CDS |
| CACCATAAATACCTATTTGG+TGG | 0.533738 | 5.4:+67951906 | MS.gene95405:CDS |
| TTCTTTAGCAGCCAACCAGT+GGG | 0.538116 | 5.4:+67950478 | MS.gene95405:intron |
| AAGTGATGTGGGTATGGTAA+CGG | 0.538936 | 5.4:+67949011 | MS.gene95405:CDS |
| GGGCATCAATTGCATCATCC+AGG | 0.542423 | 5.4:+67956979 | MS.gene95405:intron |
| AAAGTATCCCTTCATCCCTA+CGG | 0.543642 | 5.4:-67954387 | None:intergenic |
| AAGTATCCCTTCATCCCTAC+GGG | 0.545085 | 5.4:-67954386 | None:intergenic |
| TGAGAGCCCACAAACTGCAT+TGG | 0.545141 | 5.4:-67954743 | None:intergenic |
| TGGAAAGTCAATACCATCTG+TGG | 0.545953 | 5.4:-67951956 | None:intergenic |
| CAATTGTCTAATTAAGCTTG+TGG | 0.545962 | 5.4:+67956105 | MS.gene95405:CDS |
| GATCCTGATATATACATTGG+AGG | 0.546263 | 5.4:+67952483 | MS.gene95405:CDS |
| ATTGATGGCTCGGAAAATGC+TGG | 0.546735 | 5.4:+67952267 | MS.gene95405:CDS |
| GAAGTCTGACGAACTTACCT+TGG | 0.546814 | 5.4:+67954576 | MS.gene95405:CDS |
| CAGTAAAACTATACATAGCT+TGG | 0.548555 | 5.4:+67948675 | MS.gene95405:CDS |
| GAACCAGGCAGGAAATTGCA+TGG | 0.548786 | 5.4:+67953904 | MS.gene95405:CDS |
| GTACCATCAGAGTCCTAGAT+AGG | 0.551961 | 5.4:-67950524 | None:intergenic |
| GTGCAGCTATAGATGCAGAA+AGG | 0.556365 | 5.4:+67950059 | MS.gene95405:CDS |
| GCACGAGCATCCCCACTGGT+TGG | 0.557384 | 5.4:-67950489 | None:intergenic |
| ACATCTCCCGTAGGGATGAA+GGG | 0.557429 | 5.4:+67954380 | MS.gene95405:CDS |
| CTCTGTATAGAACTACTAGC+AGG | 0.557547 | 5.4:+67952330 | MS.gene95405:CDS |
| ATTCTTACTGACGTATGTCT+CGG | 0.558169 | 5.4:+67954694 | MS.gene95405:CDS |
| AATCGGCATGATGTTCTAGC+AGG | 0.558531 | 5.4:-67949403 | None:intergenic |
| TTGCGCACGAGCATCCCCAC+TGG | 0.559929 | 5.4:-67950493 | None:intergenic |
| GCCTCACAAAGTGTCAACCT+TGG | 0.561065 | 5.4:+67952297 | MS.gene95405:CDS |
| AAGCTTGCAAATAGACCAGA+TGG | 0.562090 | 5.4:-67950145 | None:intergenic |
| CAATGTATATATCAGGATCA+GGG | 0.563399 | 5.4:-67952479 | None:intergenic |
| AGTATGGTGAAATATGTCTC+AGG | 0.563485 | 5.4:-67952387 | None:intergenic |
| TGATATTGGCATGACTGGCA+TGG | 0.564848 | 5.4:+67953307 | MS.gene95405:CDS |
| AGCAGTACGAGGTGCACTTG+TGG | 0.566441 | 5.4:+67948963 | MS.gene95405:CDS |
| GATCTGATACTTCATCGTCC+AGG | 0.568050 | 5.4:+67955067 | MS.gene95405:CDS |
| TTCTTCGCTACATTCAGCAA+AGG | 0.569039 | 5.4:+67951667 | MS.gene95405:CDS |
| GCACAATAAGCTGCTGAAGG+AGG | 0.569180 | 5.4:-67952008 | None:intergenic |
| TGCTTCTAGAGTTAAAGCAT+TGG | 0.570514 | 5.4:-67947718 | None:intergenic |
| TTTCTTTAGCAGCCAACCAG+TGG | 0.574028 | 5.4:+67950477 | MS.gene95405:intron |
| ATATGTGATGGATCAAGTAA+TGG | 0.574191 | 5.4:+67954661 | MS.gene95405:CDS |
| ATAAGGAGGAAAAGTGATGT+GGG | 0.575456 | 5.4:+67949000 | MS.gene95405:CDS |
| TTTAGGAATGTATGACAGGA+AGG | 0.576270 | 5.4:+67949089 | MS.gene95405:CDS |
| TATAAGGAGGAAAAGTGATG+TGG | 0.578294 | 5.4:+67948999 | MS.gene95405:CDS |
| TACAGCTAAGACTGAACAGA+AGG | 0.579362 | 5.4:-67952439 | None:intergenic |
| TGAATATATTAGGTTCTACA+AGG | 0.580818 | 5.4:+67956783 | MS.gene95405:intron |
| TATTTGGAACGTGTGCTTTG+GGG | 0.585272 | 5.4:-67954441 | None:intergenic |
| TTTGCACAATAAGCTGCTGA+AGG | 0.596021 | 5.4:-67952011 | None:intergenic |
| TGAACCTTCAATGAAAGGCA+AGG | 0.596256 | 5.4:-67954860 | None:intergenic |
| TAGTAAAATACTTTGAAACA+CGG | 0.598571 | 5.4:-67952208 | None:intergenic |
| TTTATAATAACCCTCCTCAA+GGG | 0.602040 | 5.4:+67954484 | MS.gene95405:CDS |
| TCATTCAGTATAACAATCAG+TGG | 0.604482 | 5.4:-67955398 | None:intergenic |
| TTTACTCTAGCACCCACAGA+TGG | 0.604886 | 5.4:+67951943 | MS.gene95405:CDS |
| AATATGAAGAGCGTCTTCCA+AGG | 0.605402 | 5.4:-67954593 | None:intergenic |
| AAAATATGACATCTCCCGTA+GGG | 0.609695 | 5.4:+67954372 | MS.gene95405:CDS |
| CACACGTTCCAAATATAAGA+GGG | 0.611509 | 5.4:+67954449 | MS.gene95405:CDS |
| CTGGAACAACACCCTTGAGG+AGG | 0.612104 | 5.4:-67954495 | None:intergenic |
| GGAATTAAATAATAAATCTG+AGG | 0.614231 | 5.4:-67952418 | None:intergenic |
| GCAATGAAGCTGTCAAATGT+CGG | 0.615823 | 5.4:+67956844 | MS.gene95405:CDS |
| ATGTATATATCAGGATCAGG+GGG | 0.620026 | 5.4:-67952477 | None:intergenic |
| CCTTGAAAATGGAGGTGCAG+AGG | 0.624514 | 5.4:+67953850 | MS.gene95405:CDS |
| CCCATGTGCGTATCTATCCG+TGG | 0.624775 | 5.4:+67956571 | MS.gene95405:CDS |
| CCACGGATAGATACGCACAT+GGG | 0.626447 | 5.4:-67956571 | None:intergenic |
| GAAAATATGACATCTCCCGT+AGG | 0.626631 | 5.4:+67954371 | MS.gene95405:CDS |
| GGAAAAGGTTTACTGTTGCG+TGG | 0.627473 | 5.4:+67954772 | MS.gene95405:CDS |
| TGACAAACCTGTGTTCTCCA+CGG | 0.628015 | 5.4:-67956588 | None:intergenic |
| TACAGAGATAAAGGAAACCA+AGG | 0.628293 | 5.4:-67952314 | None:intergenic |
| AGAACTACTAGCAGGATGCA+GGG | 0.628293 | 5.4:+67952338 | MS.gene95405:CDS |
| AATATGTTGCAGATATGTGA+TGG | 0.628938 | 5.4:+67954649 | MS.gene95405:CDS |
| TATCTATCCGTGGAGAACAC+AGG | 0.630733 | 5.4:+67956581 | MS.gene95405:CDS |
| ATCAAGAGAGAGAAGTTCCA+CGG | 0.632018 | 5.4:-67953243 | None:intergenic |
| ACCAAGGTTGACACTTTGTG+AGG | 0.632916 | 5.4:-67952298 | None:intergenic |
| GGAAAGTCAATACCATCTGT+GGG | 0.633762 | 5.4:-67951955 | None:intergenic |
| TGACCTATCTAGGACTCTGA+TGG | 0.637662 | 5.4:+67950521 | MS.gene95405:CDS |
| CTTATATAGAGGCCGTATCG+TGG | 0.637874 | 5.4:-67954995 | None:intergenic |
| TGGAACAACACCCTTGAGGA+GGG | 0.639744 | 5.4:-67954494 | None:intergenic |
| AATGTATATATCAGGATCAG+GGG | 0.641803 | 5.4:-67952478 | None:intergenic |
| TTTGGCAAGAAAATGTGCCA+CGG | 0.643030 | 5.4:+67954915 | MS.gene95405:CDS |
| AATACCGTAATTCGGTCAAG+AGG | 0.649510 | 5.4:+67947897 | MS.gene95405:CDS |
| GAGAATCGCAAAATATGTTG+GGG | 0.649741 | 5.4:+67951861 | MS.gene95405:CDS |
| GACAGACATGACATGTGCAA+AGG | 0.650988 | 5.4:-67955372 | None:intergenic |
| GGCAGGATCCTTGAAAATGG+AGG | 0.653631 | 5.4:+67953842 | MS.gene95405:intron |
| AAGAACATGAAAAGCTTCCG+TGG | 0.653843 | 5.4:-67954932 | None:intergenic |
| CACGGATAGATACGCACATG+GGG | 0.656585 | 5.4:-67956570 | None:intergenic |
| TGAAACACGGCATTGCAGGA+AGG | 0.657191 | 5.4:-67952195 | None:intergenic |
| TACGGCCTCTATATAAGCAG+AGG | 0.658188 | 5.4:+67955001 | MS.gene95405:CDS |
| TGTGGACTACTCTCATAAGA+CGG | 0.667969 | 5.4:+67956123 | MS.gene95405:CDS |
| CGAAGCAAGGACTACCAATG+AGG | 0.668037 | 5.4:-67949432 | None:intergenic |
| TCCACGGATAGATACGCACA+TGG | 0.668857 | 5.4:-67956572 | None:intergenic |
| CAACTGGAACAACACCCTTG+AGG | 0.676901 | 5.4:-67954498 | None:intergenic |
| TAGCTTGATGATTGATGACG+AGG | 0.676918 | 5.4:+67952050 | MS.gene95405:CDS |
| ATTCATGCAAGCTACTTCCG+TGG | 0.680489 | 5.4:+67953630 | MS.gene95405:CDS |
| GTTGCTTGGAACTTATAAGG+AGG | 0.693521 | 5.4:+67948986 | MS.gene95405:CDS |
| TCTTTAGCAGCCAACCAGTG+GGG | 0.698072 | 5.4:+67950479 | MS.gene95405:intron |
| GCAGATTGGGAAGCAGTACG+AGG | 0.715218 | 5.4:+67948952 | MS.gene95405:CDS |
| TGTATATATCAGGATCAGGG+GGG | 0.766067 | 5.4:-67952476 | None:intergenic |
| ATTCATGTCAATCATCACAG+AGG | 0.767349 | 5.4:+67953097 | MS.gene95405:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 67947681 | 67957016 | 67947681 | ID=MS.gene95405 |
| chr5.4 | mRNA | 67947681 | 67957016 | 67947681 | ID=MS.gene95405.t1;Parent=MS.gene95405 |
| chr5.4 | exon | 67947681 | 67947743 | 67947681 | ID=MS.gene95405.t1.exon1;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67947681 | 67947743 | 67947681 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| chr5.4 | exon | 67947864 | 67947918 | 67947864 | ID=MS.gene95405.t1.exon2;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67947864 | 67947918 | 67947864 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| chr5.4 | exon | 67948623 | 67948720 | 67948623 | ID=MS.gene95405.t1.exon3;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67948623 | 67948720 | 67948623 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| chr5.4 | exon | 67948952 | 67949110 | 67948952 | ID=MS.gene95405.t1.exon4;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67948952 | 67949110 | 67948952 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| chr5.4 | exon | 67949380 | 67949439 | 67949380 | ID=MS.gene95405.t1.exon5;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67949380 | 67949439 | 67949380 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| chr5.4 | exon | 67950034 | 67950222 | 67950034 | ID=MS.gene95405.t1.exon6;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67950034 | 67950222 | 67950034 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| chr5.4 | exon | 67950489 | 67950542 | 67950489 | ID=MS.gene95405.t1.exon7;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67950489 | 67950542 | 67950489 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| chr5.4 | exon | 67951602 | 67951688 | 67951602 | ID=MS.gene95405.t1.exon8;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67951602 | 67951688 | 67951602 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| chr5.4 | exon | 67951811 | 67952504 | 67951811 | ID=MS.gene95405.t1.exon9;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67951811 | 67952504 | 67951811 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| chr5.4 | exon | 67953015 | 67953388 | 67953015 | ID=MS.gene95405.t1.exon10;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67953015 | 67953388 | 67953015 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| chr5.4 | exon | 67953578 | 67953651 | 67953578 | ID=MS.gene95405.t1.exon11;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67953578 | 67953651 | 67953578 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| chr5.4 | exon | 67953847 | 67953952 | 67953847 | ID=MS.gene95405.t1.exon12;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67953847 | 67953952 | 67953847 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| chr5.4 | exon | 67954217 | 67955088 | 67954217 | ID=MS.gene95405.t1.exon13;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67954217 | 67955088 | 67954217 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| chr5.4 | exon | 67955355 | 67955430 | 67955355 | ID=MS.gene95405.t1.exon14;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67955355 | 67955430 | 67955355 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| chr5.4 | exon | 67955532 | 67955643 | 67955532 | ID=MS.gene95405.t1.exon15;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67955532 | 67955643 | 67955532 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| chr5.4 | exon | 67956068 | 67956144 | 67956068 | ID=MS.gene95405.t1.exon16;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67956068 | 67956144 | 67956068 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| chr5.4 | exon | 67956522 | 67956602 | 67956522 | ID=MS.gene95405.t1.exon17;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67956522 | 67956602 | 67956522 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| chr5.4 | exon | 67956795 | 67956874 | 67956795 | ID=MS.gene95405.t1.exon18;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67956795 | 67956874 | 67956795 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| chr5.4 | exon | 67956980 | 67957016 | 67956980 | ID=MS.gene95405.t1.exon19;Parent=MS.gene95405.t1 |
| chr5.4 | CDS | 67956980 | 67957016 | 67956980 | ID=cds.MS.gene95405.t1;Parent=MS.gene95405.t1 |
| Gene Sequence |
| Protein sequence |
