Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95407.t1 | XP_003616940.1 | 93.3 | 1089 | 72 | 1 | 1 | 1088 | 51 | 1139 | 0.00E+00 | 1973 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95407.t1 | Q0WVF8 | 45.3 | 1102 | 559 | 14 | 1 | 1082 | 52 | 1129 | 2.7e-253 | 876.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95407.t1 | G7K7L4 | 93.3 | 1089 | 72 | 1 | 1 | 1088 | 51 | 1139 | 0.0e+00 | 1973.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene94650 | MS.gene95407 | PPI |
| MS.gene95407 | MS.gene073095 | PPI |
| MS.gene95407 | MS.gene91488 | PPI |
| MS.gene35361 | MS.gene95407 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95407.t1 | MTR_5g085950 | 93.297 | 1089 | 72 | 1 | 1 | 1088 | 51 | 1139 | 0.0 | 2013 |
| MS.gene95407.t1 | MTR_2g100870 | 86.514 | 1090 | 145 | 2 | 1 | 1088 | 51 | 1140 | 0.0 | 1865 |
| MS.gene95407.t1 | MTR_5g055460 | 72.917 | 48 | 13 | 0 | 124 | 171 | 17 | 64 | 3.19e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95407.t1 | AT5G48120 | 45.232 | 1101 | 561 | 15 | 1 | 1082 | 52 | 1129 | 0.0 | 872 |
| MS.gene95407.t1 | AT5G48120 | 45.232 | 1101 | 561 | 15 | 1 | 1082 | 52 | 1129 | 0.0 | 872 |
| MS.gene95407.t1 | AT5G48120 | 45.232 | 1101 | 561 | 15 | 1 | 1082 | 52 | 1129 | 0.0 | 872 |
Find 189 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGAAGCCCTCTTATATT+TGG | 0.180661 | 5.4:-67990103 | None:intergenic |
| AAAATACTGAAGAGCATAAA+TGG | 0.184927 | 5.4:+67990533 | MS.gene95407:CDS |
| ATGTTCTCAAATGTTGATTT+TGG | 0.210187 | 5.4:-67988711 | None:intergenic |
| CTCCACCAAATAGGTATTTA+TGG | 0.212231 | 5.4:-67987541 | None:intergenic |
| ACTAAGAATGATGGATAGTT+TGG | 0.215757 | 5.4:+67987860 | MS.gene95407:CDS |
| TGAAACTGCTGTTCAGCTTT+TGG | 0.218439 | 5.4:+67989247 | MS.gene95407:CDS |
| TCAATTACAACTTCATTCTT+TGG | 0.231489 | 5.4:-67987609 | None:intergenic |
| CATAAGACGTTAAATTTCTA+TGG | 0.235132 | 5.4:-67989226 | None:intergenic |
| CAAAATATGCTGGGGATATT+TGG | 0.235869 | 5.4:+67987502 | MS.gene95407:CDS |
| ACTTCTAATTTGAGTGAAAA+AGG | 0.246410 | 5.4:-67988924 | None:intergenic |
| TCCCCATTGTGCAGCTTGTT+CGG | 0.273499 | 5.4:+67992066 | MS.gene95407:intron |
| ATATTTGGAACGTGTGCTTT+GGG | 0.276627 | 5.4:-67990088 | None:intergenic |
| TGTTCCAGTTGCACAGGCTT+TGG | 0.282641 | 5.4:+67990156 | MS.gene95407:CDS |
| GTTCCAGTTGCACAGGCTTT+GGG | 0.289048 | 5.4:+67990157 | MS.gene95407:CDS |
| CCCCATTGTGCAGCTTGTTC+GGG | 0.296076 | 5.4:+67992067 | MS.gene95407:intron |
| AGACACCATAAATACCTATT+TGG | 0.302273 | 5.4:+67987536 | MS.gene95407:CDS |
| AACATTGATGGCTCACAAAA+TGG | 0.318087 | 5.4:+67987897 | MS.gene95407:CDS |
| AAAGCAAGCATTAAACATTC+TGG | 0.318254 | 5.4:-67985790 | None:intergenic |
| TTGAAATCATTATTTCATAT+TGG | 0.321286 | 5.4:+67988798 | MS.gene95407:CDS |
| GCAGGAAGGAATGGAAGTTT+TGG | 0.324820 | 5.4:-67987814 | None:intergenic |
| GGAGGATTGCCATTGACTTT+TGG | 0.329070 | 5.4:+67989995 | MS.gene95407:CDS |
| AACTTCTTCAGGAATTCTTC+TGG | 0.332003 | 5.4:+67984459 | MS.gene95407:intron |
| CTGAATCGGCATGATGTTCT+AGG | 0.332170 | 5.4:-67985569 | None:intergenic |
| TATATTTGGAACGTGTGCTT+TGG | 0.335893 | 5.4:-67990089 | None:intergenic |
| TTAGAAGTATTATCTGATAT+TGG | 0.336307 | 5.4:+67988939 | MS.gene95407:CDS |
| AGAGCATAAATGGGATCTTT+TGG | 0.340308 | 5.4:+67990543 | MS.gene95407:CDS |
| GAGCCCAAAGCCTGTGCAAC+TGG | 0.345968 | 5.4:-67990160 | None:intergenic |
| TGCACAGGCTTTGGGCTCTA+TGG | 0.350591 | 5.4:+67990165 | MS.gene95407:CDS |
| AGAGTCTGCTCTTCCAAGTA+TGG | 0.355409 | 5.4:+67987465 | MS.gene95407:CDS |
| GGGCTGGAAAGAGCTATATT+TGG | 0.357872 | 5.4:+67988999 | MS.gene95407:CDS |
| TGGGTTGCTTGGAACTTATA+AGG | 0.358042 | 5.4:+67985069 | MS.gene95407:CDS |
| GAAATCTGGCTCCACCAAAT+AGG | 0.361190 | 5.4:-67987550 | None:intergenic |
| CATACAAGATATCTTTATCT+TGG | 0.362497 | 5.4:-67991144 | None:intergenic |
| CTGGGCAGGATCCTTGAAAA+TGG | 0.368274 | 5.4:+67989485 | MS.gene95407:intron |
| CCTCACAAAGTGTCAACTTT+GGG | 0.375679 | 5.4:+67987931 | MS.gene95407:CDS |
| ACTTCAACAAAACAATACTA+TGG | 0.376528 | 5.4:+67988766 | MS.gene95407:CDS |
| GTTCTTACTGATGTAGTTCT+CGG | 0.377921 | 5.4:+67990340 | MS.gene95407:CDS |
| TCACCTCCAATGTATATATC+AGG | 0.379956 | 5.4:-67988119 | None:intergenic |
| AGTGAAGGGCTTGCAGATTC+TGG | 0.384723 | 5.4:+67988659 | MS.gene95407:intron |
| CCAATGTATATATCAGGATC+AGG | 0.387226 | 5.4:-67988113 | None:intergenic |
| AAGCTTGCAAATAGACTAGA+TGG | 0.393891 | 5.4:-67985850 | None:intergenic |
| AGTTCCTTGGCTTTGATTGA+AGG | 0.396588 | 5.4:+67990502 | MS.gene95407:CDS |
| ATGCAGTTTGTGGGCTCTCA+TGG | 0.409981 | 5.4:+67990392 | MS.gene95407:CDS |
| AAAATATTGAGCAATGGCTT+TGG | 0.410682 | 5.4:-67985129 | None:intergenic |
| CTAAGAATGATGGATAGTTT+GGG | 0.411335 | 5.4:+67987861 | MS.gene95407:CDS |
| ATCTTTCAGCTTAATGATGT+TGG | 0.411614 | 5.4:+67989974 | MS.gene95407:CDS |
| CTTCAACAGATACGTTAATT+CGG | 0.413042 | 5.4:+67984012 | MS.gene95407:CDS |
| GTAGTTCTATACAGAGATAA+AGG | 0.415410 | 5.4:-67987956 | None:intergenic |
| TAATTCTCCATTTGAAGAAA+AGG | 0.421895 | 5.4:+67989577 | MS.gene95407:CDS |
| AAGAAGAAAGTTTCTGAAGA+AGG | 0.429146 | 5.4:-67987275 | None:intergenic |
| GCCTCACAAAGTGTCAACTT+TGG | 0.429891 | 5.4:+67987930 | MS.gene95407:CDS |
| GAGGAAAAGTGTTGTGGGTA+TGG | 0.436372 | 5.4:+67985091 | MS.gene95407:CDS |
| TAGCTTGGTTGGGTTCTTCA+AGG | 0.437441 | 5.4:+67984534 | MS.gene95407:CDS |
| GACAAGCAATCAAGAAGAAC+TGG | 0.437792 | 5.4:-67991103 | None:intergenic |
| CTTCAAACCAATGCAGTTTG+TGG | 0.440773 | 5.4:+67990382 | MS.gene95407:CDS |
| GATTCTCTCTGCTCCATACT+TGG | 0.441561 | 5.4:-67987478 | None:intergenic |
| TATACTAAATGATGCTAAAG+AGG | 0.446254 | 5.4:+67990985 | MS.gene95407:CDS |
| ACTTTGAAACACAACATTGC+AGG | 0.450339 | 5.4:-67987832 | None:intergenic |
| AAAACTATACATAGCTTGGT+TGG | 0.451872 | 5.4:+67984523 | MS.gene95407:CDS |
| CAGACAAAATAACTAATTCC+CGG | 0.454240 | 5.4:-67987989 | None:intergenic |
| GGGTGTTGTTCCAGTTGCAC+AGG | 0.458087 | 5.4:+67990150 | MS.gene95407:CDS |
| GACATCTCCTGTAGGGATGA+AGG | 0.460855 | 5.4:+67990025 | MS.gene95407:CDS |
| GTTAACTGAATGGGAAAGTA+AGG | 0.461803 | 5.4:-67985901 | None:intergenic |
| GTCAGACTTCTCTGCACCAT+TGG | 0.462090 | 5.4:-67990209 | None:intergenic |
| GAGAGAATCGCAAAATATGC+TGG | 0.462941 | 5.4:+67987492 | MS.gene95407:CDS |
| AGTGTTGTGGGTATGGTAAC+GGG | 0.463632 | 5.4:+67985098 | MS.gene95407:CDS |
| CAAGATAAAGATATCTTGTA+TGG | 0.465086 | 5.4:+67991145 | MS.gene95407:CDS |
| AATCCATGCAATTTCCTGCC+TGG | 0.465330 | 5.4:-67989553 | None:intergenic |
| GCACACGTTCCAAATATAAG+AGG | 0.465840 | 5.4:+67990094 | MS.gene95407:CDS |
| GCTAGAGTAAAAGAGAAATC+TGG | 0.469250 | 5.4:-67987564 | None:intergenic |
| CACAACATTGCAGGAAGGAA+TGG | 0.469524 | 5.4:-67987823 | None:intergenic |
| GGGCTCTCATGGATTGGAAA+AGG | 0.473984 | 5.4:+67990403 | MS.gene95407:CDS |
| TTATCTGATATTGGCATGAC+TGG | 0.475419 | 5.4:+67988948 | MS.gene95407:CDS |
| TTCAAACCAATGCAGTTTGT+GGG | 0.477711 | 5.4:+67990383 | MS.gene95407:CDS |
| TTATTTATAATCAGGCAGAT+TGG | 0.478009 | 5.4:+67985024 | MS.gene95407:intron |
| GCAGTACGAGGTGCACTTGT+GGG | 0.478595 | 5.4:+67985050 | MS.gene95407:CDS |
| ACATCAGAATCGAAGACTCC+TGG | 0.478853 | 5.4:-67992559 | None:intergenic |
| GAAAATTTCATGCCACGATA+CGG | 0.478982 | 5.4:+67990629 | MS.gene95407:CDS |
| TATGTGATGGATCAAGTAAT+GGG | 0.481857 | 5.4:+67990308 | MS.gene95407:CDS |
| AAACTATACATAGCTTGGTT+GGG | 0.482444 | 5.4:+67984524 | MS.gene95407:CDS |
| CTGTCAAATGTCGGCAAGCA+TGG | 0.485151 | 5.4:+67992411 | MS.gene95407:CDS |
| TTTCAGCTTAATGATGTTGG+AGG | 0.487070 | 5.4:+67989977 | MS.gene95407:CDS |
| TACCGATGAGGCAACTGAAT+CGG | 0.492157 | 5.4:-67985583 | None:intergenic |
| GTTTGTGGGCTCTCATGGAT+TGG | 0.499724 | 5.4:+67990397 | MS.gene95407:CDS |
| TTCAGGAATTCTTCTGGCGG+AGG | 0.500019 | 5.4:+67984465 | MS.gene95407:intron |
| TAGAACTACTAGCAGGATGC+CGG | 0.500255 | 5.4:+67987970 | MS.gene95407:CDS |
| AAGTATCCCTTCATCCCTAC+AGG | 0.500311 | 5.4:-67990032 | None:intergenic |
| GCAGACTCTAAGATACTGTA+AGG | 0.501545 | 5.4:-67987451 | None:intergenic |
| GCAAATAGACTAGATGGATC+AGG | 0.503100 | 5.4:-67985844 | None:intergenic |
| TGCAGCTATAGATGCAGAAA+GGG | 0.509949 | 5.4:+67985765 | MS.gene95407:CDS |
| AACATCATTAAGCTGAAAGA+TGG | 0.513197 | 5.4:-67989972 | None:intergenic |
| TGCCGATTCAGTTGCCTCAT+CGG | 0.514989 | 5.4:+67985581 | MS.gene95407:CDS |
| CTTACATGTGTTAACTGAAT+GGG | 0.515810 | 5.4:-67985910 | None:intergenic |
| ATCAGACAGAAATAGTTCCT+TGG | 0.515966 | 5.4:+67990489 | MS.gene95407:CDS |
| AAATACTGAAGAGCATAAAT+GGG | 0.516826 | 5.4:+67990534 | MS.gene95407:CDS |
| GTTGATATTTGGAACCAGGC+AGG | 0.518291 | 5.4:+67989539 | MS.gene95407:CDS |
| TGCAAAGAGATGACCTATCA+AGG | 0.519237 | 5.4:+67986230 | MS.gene95407:CDS |
| TGGGTTCTTCAAGGAAAGAC+TGG | 0.520905 | 5.4:+67984543 | MS.gene95407:CDS |
| ATAAGGAGGAAAAGTGTTGT+GGG | 0.521331 | 5.4:+67985086 | MS.gene95407:CDS |
| AGGTGCACTTGTGGGTTGCT+TGG | 0.522192 | 5.4:+67985058 | MS.gene95407:CDS |
| GAAAGTTTCTGAAGAAGGAG+AGG | 0.523072 | 5.4:-67987270 | None:intergenic |
| CCTGATCCTGATATATACAT+TGG | 0.526026 | 5.4:+67988113 | MS.gene95407:CDS |
| CACAATAAGCTGCTGAAGGA+GGG | 0.526498 | 5.4:-67987640 | None:intergenic |
| TTCTGTTGATATTTGGAACC+AGG | 0.527505 | 5.4:+67989535 | MS.gene95407:CDS |
| AGAAGGAGAGGAATAACAAA+TGG | 0.529006 | 5.4:-67987258 | None:intergenic |
| GCTTACATGTGTTAACTGAA+TGG | 0.529424 | 5.4:-67985911 | None:intergenic |
| AAGTGTTGTGGGTATGGTAA+CGG | 0.530971 | 5.4:+67985097 | MS.gene95407:CDS |
| TTTAGGACTGTATGACAAGA+AGG | 0.532730 | 5.4:+67985175 | MS.gene95407:CDS |
| TATATTTGGCAATCTTTCTG+AGG | 0.533100 | 5.4:+67989013 | MS.gene95407:CDS |
| CACCATAAATACCTATTTGG+TGG | 0.533738 | 5.4:+67987539 | MS.gene95407:CDS |
| AGAGAATCGCAAAATATGCT+GGG | 0.543566 | 5.4:+67987493 | MS.gene95407:CDS |
| TGAGAGCCCACAAACTGCAT+TGG | 0.545141 | 5.4:-67990389 | None:intergenic |
| GATCTGATTCTTCATCGTCC+AGG | 0.545244 | 5.4:+67990713 | MS.gene95407:CDS |
| AGAACTACTAGCAGGATGCC+GGG | 0.545638 | 5.4:+67987971 | MS.gene95407:CDS |
| TGGAAAGTCAATACCATCTG+TGG | 0.545953 | 5.4:-67987589 | None:intergenic |
| CAATTGTCTAATTAAGCTTG+TGG | 0.545962 | 5.4:+67991670 | MS.gene95407:CDS |
| GATCCTGATATATACATTGG+AGG | 0.546263 | 5.4:+67988116 | MS.gene95407:CDS |
| GAAAATATGACATCTCCTGT+AGG | 0.546395 | 5.4:+67990017 | MS.gene95407:CDS |
| GAAGTCTGACGAACTTACCT+TGG | 0.546814 | 5.4:+67990222 | MS.gene95407:CDS |
| TTCTTCTCTACATTCAGCAA+AGG | 0.547929 | 5.4:+67987293 | MS.gene95407:CDS |
| ACATCTCCTGTAGGGATGAA+GGG | 0.548255 | 5.4:+67990026 | MS.gene95407:CDS |
| CAGTAAAACTATACATAGCT+TGG | 0.548555 | 5.4:+67984519 | MS.gene95407:CDS |
| GTACCATCAGAGTCCTTGAT+AGG | 0.548690 | 5.4:-67986243 | None:intergenic |
| GAACCAGGCAGGAAATTGCA+TGG | 0.548786 | 5.4:+67989550 | MS.gene95407:CDS |
| TATAAGGAGGAAAAGTGTTG+TGG | 0.549159 | 5.4:+67985085 | MS.gene95407:CDS |
| GTGCAGCTATAGATGCAGAA+AGG | 0.556365 | 5.4:+67985764 | MS.gene95407:CDS |
| CTCTGTATAGAACTACTAGC+AGG | 0.557547 | 5.4:+67987963 | MS.gene95407:CDS |
| TTGCACATGAGCATCCCCAC+TGG | 0.557692 | 5.4:-67986212 | None:intergenic |
| AGCAGTACGAGGTGCACTTG+TGG | 0.561736 | 5.4:+67985049 | MS.gene95407:CDS |
| CAATGTATATATCAGGATCA+GGG | 0.563399 | 5.4:-67988112 | None:intergenic |
| TGATATTGGCATGACTGGCA+TGG | 0.564848 | 5.4:+67988953 | MS.gene95407:CDS |
| TACGGCCTCTTTATAAGCAG+AGG | 0.567342 | 5.4:+67990647 | MS.gene95407:CDS |
| GCACAATAAGCTGCTGAAGG+AGG | 0.569180 | 5.4:-67987641 | None:intergenic |
| ATATGTGATGGATCAAGTAA+TGG | 0.574191 | 5.4:+67990307 | MS.gene95407:CDS |
| AAAATATGACATCTCCTGTA+GGG | 0.575414 | 5.4:+67990018 | MS.gene95407:CDS |
| TACAGCTAAGACTGAACAGA+AGG | 0.579362 | 5.4:-67988072 | None:intergenic |
| TTTCTTTAGCAGACAACCAG+TGG | 0.581788 | 5.4:+67986196 | MS.gene95407:intron |
| TATTTGGAACGTGTGCTTTG+GGG | 0.585272 | 5.4:-67990087 | None:intergenic |
| CATCAGAATCGAAGACTCCT+GGG | 0.588977 | 5.4:-67992558 | None:intergenic |
| TTTGCACAATAAGCTGCTGA+AGG | 0.596021 | 5.4:-67987644 | None:intergenic |
| TATCTATCCGTTGAGAACAC+AGG | 0.597641 | 5.4:+67992139 | MS.gene95407:CDS |
| AAACTCATTTCAAAATCCAA+TGG | 0.600291 | 5.4:+67990193 | MS.gene95407:CDS |
| TTTATAATAACCCTCCTCAA+GGG | 0.602040 | 5.4:+67990130 | MS.gene95407:CDS |
| TCATTTAGTATAACAATCAG+TGG | 0.604482 | 5.4:-67990974 | None:intergenic |
| TTTACTCTAGCACCCACAGA+TGG | 0.604886 | 5.4:+67987576 | MS.gene95407:CDS |
| AATATGAAGAGCGTCTTCCA+AGG | 0.605402 | 5.4:-67990239 | None:intergenic |
| CACACGTTCCAAATATAAGA+GGG | 0.611509 | 5.4:+67990095 | MS.gene95407:CDS |
| CTGGAACAACACCCTTGAGG+AGG | 0.612104 | 5.4:-67990141 | None:intergenic |
| GCAATGAAGCTGTCAAATGT+CGG | 0.615823 | 5.4:+67992402 | MS.gene95407:CDS |
| GATACGTTAATTCGGTCAAG+AGG | 0.616814 | 5.4:+67984020 | MS.gene95407:CDS |
| CCCAAAGTTGACACTTTGTG+AGG | 0.617867 | 5.4:-67987931 | None:intergenic |
| ATGTATATATCAGGATCAGG+GGG | 0.620026 | 5.4:-67988110 | None:intergenic |
| TGACCTATCAAGGACTCTGA+TGG | 0.620654 | 5.4:+67986240 | MS.gene95407:CDS |
| CCTTGAAAATGGAGGTGCAG+AGG | 0.624514 | 5.4:+67989496 | MS.gene95407:CDS |
| TTCTTTAGCAGACAACCAGT+GGG | 0.624563 | 5.4:+67986197 | MS.gene95407:intron |
| GGAATTAAATAAGAAATCTG+AGG | 0.626781 | 5.4:-67988051 | None:intergenic |
| GGAAAAGGTTTACTGTTGCG+TGG | 0.627473 | 5.4:+67990418 | MS.gene95407:CDS |
| TGACAAACCTGTGTTCTCAA+CGG | 0.628015 | 5.4:-67992146 | None:intergenic |
| TGAACCTTCAATCAAAGCCA+AGG | 0.628537 | 5.4:-67990506 | None:intergenic |
| AATATGTTGCAGATATGTGA+TGG | 0.628938 | 5.4:+67990295 | MS.gene95407:CDS |
| TTCTTCAGGAATTCTTCTGG+CGG | 0.629730 | 5.4:+67984462 | MS.gene95407:intron |
| ATCAAGAGAGAGAAGTTCCA+CGG | 0.632018 | 5.4:-67988889 | None:intergenic |
| GGAAAGTCAATACCATCTGT+GGG | 0.633762 | 5.4:-67987588 | None:intergenic |
| TGGAACAACACCCTTGAGGA+GGG | 0.639744 | 5.4:-67990140 | None:intergenic |
| CTTATAAAGAGGCCGTATCG+TGG | 0.639893 | 5.4:-67990641 | None:intergenic |
| AGTATTGTGAAACATATCCC+AGG | 0.641706 | 5.4:-67988020 | None:intergenic |
| AATGTATATATCAGGATCAG+GGG | 0.641803 | 5.4:-67988111 | None:intergenic |
| TGAAACACAACATTGCAGGA+AGG | 0.646858 | 5.4:-67987828 | None:intergenic |
| CAACGGATAGATACGCACAT+GGG | 0.648377 | 5.4:-67992129 | None:intergenic |
| GACAGACATGACATGTGCAA+AGG | 0.650988 | 5.4:-67990948 | None:intergenic |
| GGCAGGATCCTTGAAAATGG+AGG | 0.653631 | 5.4:+67989488 | MS.gene95407:intron |
| GGGCATCAATTGTATCACCC+AGG | 0.662615 | 5.4:+67992541 | MS.gene95407:intron |
| AAGAACATGATAAGCGTCCG+CGG | 0.664620 | 5.4:-67990578 | None:intergenic |
| ATTGATGGCTCACAAAATGG+TGG | 0.665370 | 5.4:+67987900 | MS.gene95407:CDS |
| TGTGGACTACTCTCATAAGA+CGG | 0.667969 | 5.4:+67991688 | MS.gene95407:CDS |
| AACGGATAGATACGCACATG+GGG | 0.671608 | 5.4:-67992128 | None:intergenic |
| TAGCTTGATGATCGATGACG+AGG | 0.674918 | 5.4:+67987683 | MS.gene95407:CDS |
| CAACTGGAACAACACCCTTG+AGG | 0.676901 | 5.4:-67990144 | None:intergenic |
| ATTCATGCAAGCTACTTCCG+TGG | 0.680489 | 5.4:+67989276 | MS.gene95407:CDS |
| GAGAATCGCAAAATATGCTG+GGG | 0.683427 | 5.4:+67987494 | MS.gene95407:CDS |
| CGAAGCAAGGACTACCGATG+AGG | 0.684576 | 5.4:-67985595 | None:intergenic |
| TCAACGGATAGATACGCACA+TGG | 0.685410 | 5.4:-67992130 | None:intergenic |
| AATCGGCATGATGTTCTAGG+AGG | 0.686647 | 5.4:-67985566 | None:intergenic |
| GTTGCTTGGAACTTATAAGG+AGG | 0.693521 | 5.4:+67985072 | MS.gene95407:CDS |
| TTTGGCAAGAAAATGTGCCG+CGG | 0.696200 | 5.4:+67990561 | MS.gene95407:CDS |
| GCAGATTGGAAAGCAGTACG+AGG | 0.712571 | 5.4:+67985038 | MS.gene95407:CDS |
| TCTTTAGCAGACAACCAGTG+GGG | 0.721112 | 5.4:+67986198 | MS.gene95407:intron |
| TGTATATATCAGGATCAGGG+GGG | 0.766067 | 5.4:-67988109 | None:intergenic |
| ATTCATGTCAATCATCACAG+AGG | 0.767349 | 5.4:+67988743 | MS.gene95407:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 67984002 | 67992578 | 67984002 | ID=MS.gene95407 |
| chr5.4 | mRNA | 67984002 | 67992578 | 67984002 | ID=MS.gene95407.t1;Parent=MS.gene95407 |
| chr5.4 | exon | 67984002 | 67984041 | 67984002 | ID=MS.gene95407.t1.exon1;Parent=MS.gene95407.t1 |
| chr5.4 | CDS | 67984002 | 67984041 | 67984002 | ID=cds.MS.gene95407.t1;Parent=MS.gene95407.t1 |
| chr5.4 | exon | 67984470 | 67984564 | 67984470 | ID=MS.gene95407.t1.exon2;Parent=MS.gene95407.t1 |
| chr5.4 | CDS | 67984470 | 67984564 | 67984470 | ID=cds.MS.gene95407.t1;Parent=MS.gene95407.t1 |
| chr5.4 | exon | 67985038 | 67985196 | 67985038 | ID=MS.gene95407.t1.exon3;Parent=MS.gene95407.t1 |
| chr5.4 | CDS | 67985038 | 67985196 | 67985038 | ID=cds.MS.gene95407.t1;Parent=MS.gene95407.t1 |
| chr5.4 | exon | 67985543 | 67985602 | 67985543 | ID=MS.gene95407.t1.exon4;Parent=MS.gene95407.t1 |
| chr5.4 | CDS | 67985543 | 67985602 | 67985543 | ID=cds.MS.gene95407.t1;Parent=MS.gene95407.t1 |
| chr5.4 | exon | 67985739 | 67985927 | 67985739 | ID=MS.gene95407.t1.exon5;Parent=MS.gene95407.t1 |
| chr5.4 | CDS | 67985739 | 67985927 | 67985739 | ID=cds.MS.gene95407.t1;Parent=MS.gene95407.t1 |
| chr5.4 | exon | 67986208 | 67986261 | 67986208 | ID=MS.gene95407.t1.exon6;Parent=MS.gene95407.t1 |
| chr5.4 | CDS | 67986208 | 67986261 | 67986208 | ID=cds.MS.gene95407.t1;Parent=MS.gene95407.t1 |
| chr5.4 | exon | 67987228 | 67987314 | 67987228 | ID=MS.gene95407.t1.exon7;Parent=MS.gene95407.t1 |
| chr5.4 | CDS | 67987228 | 67987314 | 67987228 | ID=cds.MS.gene95407.t1;Parent=MS.gene95407.t1 |
| chr5.4 | exon | 67987444 | 67988137 | 67987444 | ID=MS.gene95407.t1.exon8;Parent=MS.gene95407.t1 |
| chr5.4 | CDS | 67987444 | 67988137 | 67987444 | ID=cds.MS.gene95407.t1;Parent=MS.gene95407.t1 |
| chr5.4 | exon | 67988661 | 67989034 | 67988661 | ID=MS.gene95407.t1.exon9;Parent=MS.gene95407.t1 |
| chr5.4 | CDS | 67988661 | 67989034 | 67988661 | ID=cds.MS.gene95407.t1;Parent=MS.gene95407.t1 |
| chr5.4 | exon | 67989224 | 67989297 | 67989224 | ID=MS.gene95407.t1.exon10;Parent=MS.gene95407.t1 |
| chr5.4 | CDS | 67989224 | 67989297 | 67989224 | ID=cds.MS.gene95407.t1;Parent=MS.gene95407.t1 |
| chr5.4 | exon | 67989493 | 67989598 | 67989493 | ID=MS.gene95407.t1.exon11;Parent=MS.gene95407.t1 |
| chr5.4 | CDS | 67989493 | 67989598 | 67989493 | ID=cds.MS.gene95407.t1;Parent=MS.gene95407.t1 |
| chr5.4 | exon | 67989863 | 67990734 | 67989863 | ID=MS.gene95407.t1.exon12;Parent=MS.gene95407.t1 |
| chr5.4 | CDS | 67989863 | 67990734 | 67989863 | ID=cds.MS.gene95407.t1;Parent=MS.gene95407.t1 |
| chr5.4 | exon | 67990931 | 67991006 | 67990931 | ID=MS.gene95407.t1.exon13;Parent=MS.gene95407.t1 |
| chr5.4 | CDS | 67990931 | 67991006 | 67990931 | ID=cds.MS.gene95407.t1;Parent=MS.gene95407.t1 |
| chr5.4 | exon | 67991097 | 67991208 | 67991097 | ID=MS.gene95407.t1.exon14;Parent=MS.gene95407.t1 |
| chr5.4 | CDS | 67991097 | 67991208 | 67991097 | ID=cds.MS.gene95407.t1;Parent=MS.gene95407.t1 |
| chr5.4 | exon | 67991633 | 67991709 | 67991633 | ID=MS.gene95407.t1.exon15;Parent=MS.gene95407.t1 |
| chr5.4 | CDS | 67991633 | 67991709 | 67991633 | ID=cds.MS.gene95407.t1;Parent=MS.gene95407.t1 |
| chr5.4 | exon | 67992080 | 67992160 | 67992080 | ID=MS.gene95407.t1.exon16;Parent=MS.gene95407.t1 |
| chr5.4 | CDS | 67992080 | 67992160 | 67992080 | ID=cds.MS.gene95407.t1;Parent=MS.gene95407.t1 |
| chr5.4 | exon | 67992353 | 67992432 | 67992353 | ID=MS.gene95407.t1.exon17;Parent=MS.gene95407.t1 |
| chr5.4 | CDS | 67992353 | 67992432 | 67992353 | ID=cds.MS.gene95407.t1;Parent=MS.gene95407.t1 |
| chr5.4 | exon | 67992542 | 67992578 | 67992542 | ID=MS.gene95407.t1.exon18;Parent=MS.gene95407.t1 |
| chr5.4 | CDS | 67992542 | 67992578 | 67992542 | ID=cds.MS.gene95407.t1;Parent=MS.gene95407.t1 |
| Gene Sequence |
| Protein sequence |
