Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95545.t1 | XP_003605903.1 | 97.8 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 1.50E-151 | 545.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95545.t1 | P87027 | 45.5 | 187 | 102 | 0 | 90 | 276 | 9 | 195 | 3.2e-46 | 186.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95545.t1 | G7JDG8 | 97.8 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 1.1e-151 | 545.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95545 | MS.gene038386 | PPI |
| MS.gene95545 | MS.gene017154 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95545.t1 | MTR_4g047870 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 563 |
| MS.gene95545.t1 | MTR_5g092060 | 76.166 | 193 | 46 | 0 | 84 | 276 | 97 | 289 | 3.95e-109 | 317 |
| MS.gene95545.t1 | MTR_3g064390 | 30.539 | 167 | 106 | 4 | 93 | 256 | 12 | 171 | 4.39e-14 | 69.7 |
| MS.gene95545.t1 | MTR_5g076590 | 30.539 | 167 | 106 | 4 | 93 | 256 | 12 | 171 | 2.72e-13 | 67.4 |
| MS.gene95545.t1 | MTR_7g103070 | 26.667 | 180 | 124 | 3 | 90 | 266 | 15 | 189 | 3.24e-13 | 67.4 |
| MS.gene95545.t1 | MTR_8g103550 | 27.879 | 165 | 113 | 2 | 93 | 256 | 11 | 170 | 6.20e-13 | 66.6 |
| MS.gene95545.t1 | MTR_1g062760 | 26.667 | 180 | 123 | 4 | 90 | 266 | 13 | 186 | 1.83e-12 | 65.5 |
| MS.gene95545.t1 | MTR_4g098950 | 24.260 | 169 | 122 | 2 | 89 | 256 | 7 | 170 | 1.90e-12 | 65.1 |
| MS.gene95545.t1 | MTR_5g013900 | 24.260 | 169 | 122 | 2 | 89 | 256 | 7 | 170 | 3.95e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95545.t1 | AT3G21700 | 60.269 | 297 | 92 | 5 | 1 | 276 | 1 | 292 | 1.48e-110 | 321 |
| MS.gene95545.t1 | AT3G21700 | 59.933 | 297 | 92 | 6 | 1 | 276 | 1 | 291 | 1.23e-108 | 316 |
| MS.gene95545.t1 | AT5G54840 | 52.500 | 280 | 124 | 5 | 1 | 276 | 12 | 286 | 2.02e-91 | 272 |
| MS.gene95545.t1 | AT3G21700 | 52.459 | 244 | 89 | 6 | 1 | 223 | 1 | 238 | 1.39e-67 | 210 |
| MS.gene95545.t1 | AT5G54840 | 44.444 | 198 | 101 | 5 | 1 | 194 | 12 | 204 | 1.25e-40 | 140 |
| MS.gene95545.t1 | AT5G54840 | 55.714 | 140 | 57 | 3 | 59 | 194 | 66 | 204 | 3.82e-40 | 139 |
| MS.gene95545.t1 | AT4G19640 | 28.824 | 170 | 111 | 4 | 90 | 256 | 9 | 171 | 1.88e-14 | 70.9 |
| MS.gene95545.t1 | AT5G45130 | 28.824 | 170 | 111 | 4 | 90 | 256 | 9 | 171 | 4.41e-14 | 69.7 |
| MS.gene95545.t1 | AT2G44610 | 25.444 | 169 | 120 | 2 | 89 | 256 | 7 | 170 | 3.59e-13 | 67.4 |
| MS.gene95545.t1 | AT5G45130 | 29.268 | 164 | 106 | 4 | 96 | 256 | 23 | 179 | 5.23e-13 | 67.0 |
| MS.gene95545.t1 | AT5G03530 | 27.222 | 180 | 122 | 4 | 90 | 266 | 12 | 185 | 9.77e-13 | 66.2 |
| MS.gene95545.t1 | AT5G03530 | 27.222 | 180 | 122 | 4 | 90 | 266 | 12 | 185 | 9.77e-13 | 66.2 |
| MS.gene95545.t1 | AT5G59150 | 26.554 | 177 | 123 | 3 | 84 | 259 | 6 | 176 | 6.62e-12 | 63.9 |
| MS.gene95545.t1 | AT1G07410 | 24.862 | 181 | 129 | 3 | 81 | 259 | 1 | 176 | 3.55e-11 | 62.0 |
Find 63 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACGTATATCCTATTGTATC+TGG | 0.293441 | 4.3:+51039502 | MS.gene95545:CDS |
| AAATGAATTGGATACTGATT+TGG | 0.301503 | 4.3:+51039056 | MS.gene95545:CDS |
| CACCGACTGCTTGCCTGCTC+TGG | 0.321280 | 4.3:+51038910 | MS.gene95545:CDS |
| TTGTTGGGTGATTGCCAAAT+TGG | 0.353624 | 4.3:+51039096 | MS.gene95545:CDS |
| ATTGTTGTAGACGGCAATTC+CGG | 0.368449 | 4.3:+51040102 | MS.gene95545:intron |
| TTCACTCAAAATTAGCTTGT+TGG | 0.369785 | 4.3:+51039080 | MS.gene95545:CDS |
| TCACTCAAAATTAGCTTGTT+GGG | 0.374517 | 4.3:+51039081 | MS.gene95545:CDS |
| ATGGTCCATTGCATATCAAT+AGG | 0.376812 | 4.3:-51040163 | None:intergenic |
| GCCTGCTCTGGAAAGCAGCC+CGG | 0.377573 | 4.3:+51038922 | MS.gene95545:CDS |
| ATCTCCGCGGGCTTCGCTGT+TGG | 0.390597 | 4.3:+51038990 | MS.gene95545:CDS |
| ACCGGGCTGCTTTCCAGAGC+AGG | 0.391261 | 4.3:-51038923 | None:intergenic |
| CCAGCTTCCAATGGCATGTA+AGG | 0.422047 | 4.3:+51039631 | MS.gene95545:CDS |
| GGTACAAAGAAGCAAGGAAA+TGG | 0.432118 | 4.3:+51039995 | MS.gene95545:CDS |
| CAAGTCGATGCACATTAAAC+AGG | 0.439545 | 4.3:+51039687 | MS.gene95545:CDS |
| AGAAGCAAGGAAATGGAATC+AGG | 0.446817 | 4.3:+51040002 | MS.gene95545:CDS |
| TTGTACTTCCCAGATACAAT+AGG | 0.464379 | 4.3:-51039511 | None:intergenic |
| CAAAACTCTTCGACTTACCT+TGG | 0.467610 | 4.3:+51042194 | MS.gene95545:CDS |
| CTGAATGAAATCATCAAACT+TGG | 0.473260 | 4.3:-51040137 | None:intergenic |
| ACGGCAATTCCGGTGTTGAT+AGG | 0.475548 | 4.3:+51040112 | MS.gene95545:CDS |
| TTCAGCATTGCCATCTCCGC+GGG | 0.486533 | 4.3:+51038978 | MS.gene95545:CDS |
| AACAGCGAAGCCCGCGGAGA+TGG | 0.486569 | 4.3:-51038988 | None:intergenic |
| ACTCCTTTGCGCTGCGAAGG+AGG | 0.492564 | 4.3:+51038839 | MS.gene95545:CDS |
| GAGGAAAGGACCAAATCAAA+TGG | 0.496937 | 4.3:+51039455 | MS.gene95545:CDS |
| TTTATTTCAGTGTTCTGGGA+TGG | 0.498640 | 4.3:+51039974 | MS.gene95545:intron |
| GTCACTCCTTTGCGCTGCGA+AGG | 0.511914 | 4.3:+51038836 | MS.gene95545:CDS |
| CCTTACATGCCATTGGAAGC+TGG | 0.517454 | 4.3:-51039631 | None:intergenic |
| GTGGAAAGGAATCTAAATGT+TGG | 0.519478 | 4.3:+51042220 | MS.gene95545:CDS |
| AGATTCCTTTCCACTGTCCA+AGG | 0.525285 | 4.3:-51042211 | None:intergenic |
| ACTGAGTCCTTACATGCCAT+TGG | 0.527947 | 4.3:-51039638 | None:intergenic |
| TGGTCCATTGCATATCAATA+GGG | 0.535828 | 4.3:-51040162 | None:intergenic |
| TGTTGCAGGTGAAATATGTT+GGG | 0.542595 | 4.3:+51039406 | MS.gene95545:intron |
| ATGTTGCAGGTGAAATATGT+TGG | 0.547304 | 4.3:+51039405 | MS.gene95545:intron |
| CTTCGACTTACCTTGGACAG+TGG | 0.548530 | 4.3:+51042201 | MS.gene95545:CDS |
| AGCTCCCTATTGATATGCAA+TGG | 0.560194 | 4.3:+51040158 | MS.gene95545:CDS |
| ACGTATATCCTATTGTATCT+GGG | 0.564779 | 4.3:+51039503 | MS.gene95545:CDS |
| AAATCAAATGGACAAAACAT+TGG | 0.567322 | 4.3:+51039467 | MS.gene95545:CDS |
| AAGAGCAGGGAGTGGAACAG+AGG | 0.569125 | 4.3:+51039436 | MS.gene95545:CDS |
| AAGCCTCCTTCGCAGCGCAA+AGG | 0.570122 | 4.3:-51038842 | None:intergenic |
| GAGCTCGAAGGATACATCTC+CGG | 0.571862 | 4.3:-51038885 | None:intergenic |
| TATTGTATCTGGGAAGTACA+AGG | 0.574671 | 4.3:+51039513 | MS.gene95545:CDS |
| ACTTACCTTGGACAGTGGAA+AGG | 0.576381 | 4.3:+51042206 | MS.gene95545:CDS |
| ATCTCCGGAGCAACGATACA+CGG | 0.577259 | 4.3:-51038870 | None:intergenic |
| TTCCAGAGCAGGCAAGCAGT+CGG | 0.579459 | 4.3:-51038912 | None:intergenic |
| ACAGCCGTGTATCGTTGCTC+CGG | 0.583287 | 4.3:+51038866 | MS.gene95545:CDS |
| CAGGGAGTGGAACAGAGGAA+AGG | 0.595988 | 4.3:+51039441 | MS.gene95545:CDS |
| ATCAGAAGACCAGCTTCCAA+TGG | 0.601240 | 4.3:+51039622 | MS.gene95545:CDS |
| GGAGATGGCAATGCTGAATG+TGG | 0.604089 | 4.3:-51038973 | None:intergenic |
| ATTCAGCATTGCCATCTCCG+CGG | 0.613287 | 4.3:+51038977 | MS.gene95545:CDS |
| GCAATGGACCATCGCTAGTG+AGG | 0.615352 | 4.3:+51040174 | MS.gene95545:CDS |
| CTGTACGTAGCATTAGCACC+GGG | 0.621249 | 4.3:-51038940 | None:intergenic |
| GCTGTACGTAGCATTAGCAC+CGG | 0.623329 | 4.3:-51038941 | None:intergenic |
| AGCGATTACCTCACTAGCGA+TGG | 0.627900 | 4.3:-51040182 | None:intergenic |
| GACAAAACATTGGTTGTGAG+TGG | 0.635995 | 4.3:+51039477 | MS.gene95545:CDS |
| ACAGGCAAGAACATATGCAA+AGG | 0.636144 | 4.3:+51042096 | MS.gene95545:intron |
| TGGGATGGTACAAAGAAGCA+AGG | 0.641092 | 4.3:+51039989 | MS.gene95545:CDS |
| AACTTGGTTCCTATCAACAC+CGG | 0.647380 | 4.3:-51040121 | None:intergenic |
| GCAGTCGGTGCAGAGCTCGA+AGG | 0.658902 | 4.3:-51038897 | None:intergenic |
| TGCACTTGAAAAGAACAAAG+TGG | 0.664540 | 4.3:-51042128 | None:intergenic |
| GAGATGGCAATGCTGAATGT+GGG | 0.664888 | 4.3:-51038972 | None:intergenic |
| TTGCAGAGAAGTTTCGACGG+TGG | 0.670379 | 4.3:-51039016 | None:intergenic |
| TGGTTGCAGAGAAGTTTCGA+CGG | 0.671139 | 4.3:-51039019 | None:intergenic |
| GAATCCAACAGCGAAGCCCG+CGG | 0.676951 | 4.3:-51038994 | None:intergenic |
| AATGGCATGTAAGGACTCAG+TGG | 0.696623 | 4.3:+51039640 | MS.gene95545:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAAAATCATATAAATA+TGG | + | chr4.3:51041899-51041918 | MS.gene95545:intron | 10.0% |
| !! | ATGAATATAAATTTATAAGA+GGG | + | chr4.3:51040550-51040569 | MS.gene95545:intron | 10.0% |
| !! | TATGAATATAAATTTATAAG+AGG | + | chr4.3:51040549-51040568 | MS.gene95545:intron | 10.0% |
| !! | TGATCAAATTATATTTATAA+GGG | - | chr4.3:51039570-51039589 | None:intergenic | 10.0% |
| !! | TTGATCAAATTATATTTATA+AGG | - | chr4.3:51039571-51039590 | None:intergenic | 10.0% |
| !!! | AATTTTAATTTGATGATTTT+AGG | + | chr4.3:51039542-51039561 | MS.gene95545:intron | 10.0% |
| !! | ATGTTTAATATTATACTTGA+AGG | + | chr4.3:51039590-51039609 | MS.gene95545:intron | 15.0% |
| !! | ATTCATGATCAATTTAATTA+TGG | + | chr4.3:51041248-51041267 | MS.gene95545:intron | 15.0% |
| !! | CATATACTATAAAGTTAAAT+TGG | - | chr4.3:51040776-51040795 | None:intergenic | 15.0% |
| !! | GTTTGTAAATAAATGATTAT+GGG | - | chr4.3:51041998-51042017 | None:intergenic | 15.0% |
| !! | TCAATGTTTATCTTAAAATA+TGG | - | chr4.3:51040623-51040642 | None:intergenic | 15.0% |
| !! | TGTTTAATAATCATAATCAT+AGG | - | chr4.3:51040834-51040853 | None:intergenic | 15.0% |
| !! | TGTTTGTAAATAAATGATTA+TGG | - | chr4.3:51041999-51042018 | None:intergenic | 15.0% |
| !! | TTAAGAATGAAAAAATGATT+CGG | - | chr4.3:51040466-51040485 | None:intergenic | 15.0% |
| !!! | AATTTGATTTAATAATTGAG+AGG | + | chr4.3:51041732-51041751 | MS.gene95545:intron | 15.0% |
| !!! | TTTAAAATTATTAGTTGTGT+CGG | + | chr4.3:51039266-51039285 | MS.gene95545:intron | 15.0% |
| !! | AAATTAGTAATAGTGTCAAT+AGG | - | chr4.3:51040971-51040990 | None:intergenic | 20.0% |
| !! | ACTATTACTAATTTCTTTGT+AGG | + | chr4.3:51040977-51040996 | MS.gene95545:intron | 20.0% |
| !! | ATTTAATAATTGAGAGGTTA+AGG | + | chr4.3:51041738-51041757 | MS.gene95545:intron | 20.0% |
| !! | CTATTACTAATTTCTTTGTA+GGG | + | chr4.3:51040978-51040997 | MS.gene95545:intron | 20.0% |
| !! | CTGAAATAAAACCAAAAAAT+AGG | - | chr4.3:51039964-51039983 | None:intergenic | 20.0% |
| !! | TAAATAAATGATTATGGGTT+GGG | - | chr4.3:51041993-51042012 | None:intergenic | 20.0% |
| !! | TTAAGTGTAATTACAAGTTT+CGG | - | chr4.3:51039235-51039254 | None:intergenic | 20.0% |
| !! | TTTAATAATTGAGAGGTTAA+GGG | + | chr4.3:51041739-51041758 | MS.gene95545:intron | 20.0% |
| !! | TTTCTGATGTCAATTATATT+TGG | + | chr4.3:51039898-51039917 | MS.gene95545:intron | 20.0% |
| !!! | AATCAGGTAACATATTATTT+TGG | + | chr4.3:51040018-51040037 | MS.gene95545:intron | 20.0% |
| !!! | CAATCTTCTAAAAATTAAGA+TGG | - | chr4.3:51040280-51040299 | None:intergenic | 20.0% |
| !!! | GAAATACCAAATTTGAAATA+TGG | - | chr4.3:51041428-51041447 | None:intergenic | 20.0% |
| !!! | TGACTTTTGTCAAAATATTA+TGG | + | chr4.3:51041203-51041222 | MS.gene95545:intron | 20.0% |
| !!! | TTAATCTTCATCTTTTAAGT+TGG | + | chr4.3:51040574-51040593 | MS.gene95545:intron | 20.0% |
| ! | AAACAGGTAATTCTCAAATT+CGG | + | chr4.3:51039703-51039722 | MS.gene95545:intron | 25.0% |
| ! | AAAGTTGCACTAAATATACA+AGG | - | chr4.3:51041580-51041599 | None:intergenic | 25.0% |
| ! | AAATCAAATGGACAAAACAT+TGG | + | chr4.3:51039467-51039486 | MS.gene95545:CDS | 25.0% |
| ! | AACGATCCATATTTCAAATT+TGG | + | chr4.3:51041419-51041438 | MS.gene95545:intron | 25.0% |
| ! | AAGTTGCACTAAATATACAA+GGG | - | chr4.3:51041579-51041598 | None:intergenic | 25.0% |
| ! | AATATTATACTTGAAGGTGA+TGG | + | chr4.3:51039596-51039615 | MS.gene95545:intron | 25.0% |
| ! | AATTTCTGCTGAAAATTGAT+TGG | + | chr4.3:51040046-51040065 | MS.gene95545:intron | 25.0% |
| ! | ACATGTAAGACTAATCAATT+TGG | + | chr4.3:51040716-51040735 | MS.gene95545:intron | 25.0% |
| ! | AGTAAATGTGACAGTTAAAA+AGG | + | chr4.3:51041815-51041834 | MS.gene95545:intron | 25.0% |
| ! | CATTTGAACATTGAATTAAC+AGG | + | chr4.3:51042078-51042097 | MS.gene95545:intron | 25.0% |
| ! | CGACCTATTAATTATTAATG+CGG | - | chr4.3:51041393-51041412 | None:intergenic | 25.0% |
| ! | GTAAATAAATGATTATGGGT+TGG | - | chr4.3:51041994-51042013 | None:intergenic | 25.0% |
| ! | TAAATATACAAGGGTAGAAA+AGG | - | chr4.3:51041570-51041589 | None:intergenic | 25.0% |
| ! | TAGGAATGACAAAACAATAA+AGG | - | chr4.3:51040815-51040834 | None:intergenic | 25.0% |
| ! | TCACCGCATTAATAATTAAT+AGG | + | chr4.3:51041387-51041406 | MS.gene95545:intron | 25.0% |
| ! | TTATTTACCAATTTGGTCAA+TGG | - | chr4.3:51041315-51041334 | None:intergenic | 25.0% |
| ! | TTCAAATGTGACACTTATTT+AGG | + | chr4.3:51041779-51041798 | MS.gene95545:intron | 25.0% |
| ! | TTTGTTGAAAAAAATGTTGC+AGG | + | chr4.3:51039392-51039411 | MS.gene95545:intron | 25.0% |
| !! | AAATGAATTGGATACTGATT+TGG | + | chr4.3:51039056-51039075 | MS.gene95545:CDS | 25.0% |
| !! | AATGTTTTGTCCATTTGATT+TGG | - | chr4.3:51039468-51039487 | None:intergenic | 25.0% |
| !! | TATTCAGCTTTTCTCAATAA+AGG | - | chr4.3:51040749-51040768 | None:intergenic | 25.0% |
| !! | TCAGACTTTTGTCTAAAAAA+TGG | + | chr4.3:51038814-51038833 | MS.gene95545:CDS | 25.0% |
| !! | TGTTTTTCTCACAAATGAAT+TGG | + | chr4.3:51039044-51039063 | MS.gene95545:CDS | 25.0% |
| !!! | GAAGAATCAATCCTATTTTT+TGG | + | chr4.3:51039950-51039969 | MS.gene95545:intron | 25.0% |
| !!! | TAACAACGTTTTATTCCAAA+AGG | + | chr4.3:51040662-51040681 | MS.gene95545:intron | 25.0% |
| !!! | TAGAGTGTTATTTACCAATT+TGG | - | chr4.3:51041322-51041341 | None:intergenic | 25.0% |
| AAAAACTCGTCTTTCCAATT+TGG | - | chr4.3:51039113-51039132 | None:intergenic | 30.0% | |
| ACGTATATCCTATTGTATCT+GGG | + | chr4.3:51039503-51039522 | MS.gene95545:CDS | 30.0% | |
| AGGTAACGTGTAAAGAAAAT+AGG | - | chr4.3:51040951-51040970 | None:intergenic | 30.0% | |
| ATGTGACAGTTAAAAAGGAA+CGG | + | chr4.3:51041820-51041839 | MS.gene95545:intron | 30.0% | |
| CAAATTAGTGGTATATGCAT+GGG | - | chr4.3:51041092-51041111 | None:intergenic | 30.0% | |
| CTAAAAAAGGACCAAATTAG+TGG | - | chr4.3:51041104-51041123 | None:intergenic | 30.0% | |
| CTGAATGAAATCATCAAACT+TGG | - | chr4.3:51040140-51040159 | None:intergenic | 30.0% | |
| GGTAAAAACGACTCATATAA+AGG | - | chr4.3:51041504-51041523 | None:intergenic | 30.0% | |
| GGTAACGTGTAAAGAAAATA+GGG | - | chr4.3:51040950-51040969 | None:intergenic | 30.0% | |
| GTAACGTGTAAAGAAAATAG+GGG | - | chr4.3:51040949-51040968 | None:intergenic | 30.0% | |
| TCATTTGTGAGAAAAACAGA+TGG | - | chr4.3:51039042-51039061 | None:intergenic | 30.0% | |
| TCTAATTGGAACACTATATG+CGG | - | chr4.3:51041028-51041047 | None:intergenic | 30.0% | |
| TTCGCTAAAAACGTTAATCA+TGG | + | chr4.3:51041701-51041720 | MS.gene95545:intron | 30.0% | |
| ! | GTCTTACATGTAGATTTTGT+AGG | - | chr4.3:51040707-51040726 | None:intergenic | 30.0% |
| ! | TAGATTTTGTAGGCTTCTTA+TGG | - | chr4.3:51040697-51040716 | None:intergenic | 30.0% |
| ! | TTATGGAATTGAACTCCTTT+TGG | - | chr4.3:51040680-51040699 | None:intergenic | 30.0% |
| ! | TTGATGATCATTGATCCTAA+GGG | + | chr4.3:51041956-51041975 | MS.gene95545:intron | 30.0% |
| ! | TTTGATGATCATTGATCCTA+AGG | + | chr4.3:51041955-51041974 | MS.gene95545:intron | 30.0% |
| !! | ACTGCTTATAATGGATTATG+GGG | - | chr4.3:51041926-51041945 | None:intergenic | 30.0% |
| !! | ACTGTTTAATTTTGATCCAC+CGG | + | chr4.3:51039813-51039832 | MS.gene95545:intron | 30.0% |
| !! | CTTTCTAGTTAGTGTATGTT+TGG | + | chr4.3:51040209-51040228 | MS.gene95545:intron | 30.0% |
| !! | GACTGCTTATAATGGATTAT+GGG | - | chr4.3:51041927-51041946 | None:intergenic | 30.0% |
| !! | TCACTCAAAATTAGCTTGTT+GGG | + | chr4.3:51039081-51039100 | MS.gene95545:CDS | 30.0% |
| !! | TGACTGCTTATAATGGATTA+TGG | - | chr4.3:51041928-51041947 | None:intergenic | 30.0% |
| !! | TTCACTCAAAATTAGCTTGT+TGG | + | chr4.3:51039080-51039099 | MS.gene95545:CDS | 30.0% |
| !!! | AATTGGAAAGACGAGTTTTT+TGG | + | chr4.3:51039113-51039132 | MS.gene95545:CDS | 30.0% |
| !!! | ATTAACGTTTTTAGCGAATG+TGG | - | chr4.3:51041699-51041718 | None:intergenic | 30.0% |
| !!! | TCTTTTAAGTTGGTTCTGTA+AGG | + | chr4.3:51040584-51040603 | MS.gene95545:intron | 30.0% |
| !!! | TGGTTTTATTTCAGTGTTCT+GGG | + | chr4.3:51039970-51039989 | MS.gene95545:intron | 30.0% |
| !!! | TTAACGTTTTTAGCGAATGT+GGG | - | chr4.3:51041698-51041717 | None:intergenic | 30.0% |
| !!! | TTGGTTTTATTTCAGTGTTC+TGG | + | chr4.3:51039969-51039988 | MS.gene95545:intron | 30.0% |
| AAACGTTAATCATGGTGTAG+AGG | + | chr4.3:51041709-51041728 | MS.gene95545:intron | 35.0% | |
| AAGATTGAAAATCCGTCTTG+AGG | + | chr4.3:51040293-51040312 | MS.gene95545:intron | 35.0% | |
| AAGGGATTGATAGGATTCTT+AGG | + | chr4.3:51040905-51040924 | MS.gene95545:intron | 35.0% | |
| AAGGGTAGAAAAGGAAAAAG+AGG | - | chr4.3:51041561-51041580 | None:intergenic | 35.0% | |
| ACATGCACATGCACTAAAAA+AGG | - | chr4.3:51041117-51041136 | None:intergenic | 35.0% | |
| AGGGTAGAAAAGGAAAAAGA+GGG | - | chr4.3:51041560-51041579 | None:intergenic | 35.0% | |
| ATATTTCCCACAATTACTCG+GGG | - | chr4.3:51039851-51039870 | None:intergenic | 35.0% | |
| ATGGTCCATTGCATATCAAT+AGG | - | chr4.3:51040166-51040185 | None:intergenic | 35.0% | |
| ATGTTGCAGGTGAAATATGT+TGG | + | chr4.3:51039405-51039424 | MS.gene95545:intron | 35.0% | |
| CAATGTCAATTCAGGTGAAA+GGG | + | chr4.3:51040887-51040906 | MS.gene95545:intron | 35.0% | |
| CACGTATATCCTATTGTATC+TGG | + | chr4.3:51039502-51039521 | MS.gene95545:CDS | 35.0% | |
| CACTATTGTCAGAAAAACGT+GGG | - | chr4.3:51041634-51041653 | None:intergenic | 35.0% | |
| CCAAATTAGTGGTATATGCA+TGG | - | chr4.3:51041093-51041112 | None:intergenic | 35.0% | |
| CCATGCATATACCACTAATT+TGG | + | chr4.3:51041090-51041109 | MS.gene95545:intron | 35.0% | |
| CGATATTTCCCACAATTACT+CGG | - | chr4.3:51039853-51039872 | None:intergenic | 35.0% | |
| GACTCATATAAAGGAACAGA+GGG | - | chr4.3:51041495-51041514 | None:intergenic | 35.0% | |
| GATATTTCCCACAATTACTC+GGG | - | chr4.3:51039852-51039871 | None:intergenic | 35.0% | |
| GGATCAATGATCATCAAACA+TGG | - | chr4.3:51041953-51041972 | None:intergenic | 35.0% | |
| GTCAAATCCATTGACCAAAT+TGG | + | chr4.3:51041305-51041324 | MS.gene95545:intron | 35.0% | |
| GTCTCACATTGAATGAGATA+AGG | + | chr4.3:51040526-51040545 | MS.gene95545:intron | 35.0% | |
| GTGGAAAGGAATCTAAATGT+TGG | + | chr4.3:51042220-51042239 | MS.gene95545:CDS | 35.0% | |
| TAACTACATTAGTCCGATCT+CGG | - | chr4.3:51039764-51039783 | None:intergenic | 35.0% | |
| TGCACTTGAAAAGAACAAAG+TGG | - | chr4.3:51042131-51042150 | None:intergenic | 35.0% | |
| TGGTCCATTGCATATCAATA+GGG | - | chr4.3:51040165-51040184 | None:intergenic | 35.0% | |
| TGTGTTCAATCTATGAAGCA+CGG | + | chr4.3:51039157-51039176 | MS.gene95545:intron | 35.0% | |
| TGTTGCAGGTGAAATATGTT+GGG | + | chr4.3:51039406-51039425 | MS.gene95545:intron | 35.0% | |
| TTAGTGTATGTTTGGTTGAG+CGG | + | chr4.3:51040217-51040236 | MS.gene95545:intron | 35.0% | |
| TTCAGTTGCAATGTCAATTC+AGG | + | chr4.3:51040879-51040898 | MS.gene95545:intron | 35.0% | |
| TTGTACTTCCCAGATACAAT+AGG | - | chr4.3:51039514-51039533 | None:intergenic | 35.0% | |
| ! | AGCAGGTGATTGATTCTAAT+TGG | - | chr4.3:51041042-51041061 | None:intergenic | 35.0% |
| ! | CACGTTTTTCTGACAATAGT+GGG | + | chr4.3:51041633-51041652 | MS.gene95545:intron | 35.0% |
| ! | TATTGTATCTGGGAAGTACA+AGG | + | chr4.3:51039513-51039532 | MS.gene95545:CDS | 35.0% |
| ! | TTTTAGTGCATGTGCATGTT+TGG | + | chr4.3:51041118-51041137 | MS.gene95545:intron | 35.0% |
| !! | AGGGAGTATTAGACTAAGAT+TGG | - | chr4.3:51041476-51041495 | None:intergenic | 35.0% |
| !! | TAAATGATTATGGGTTGGGT+AGG | - | chr4.3:51041989-51042008 | None:intergenic | 35.0% |
| !! | TACTCTAAAGTCCAAATGCA+TGG | + | chr4.3:51041672-51041691 | MS.gene95545:intron | 35.0% |
| !! | TTTATTTCAGTGTTCTGGGA+TGG | + | chr4.3:51039974-51039993 | MS.gene95545:intron | 35.0% |
| !! | TTTGGACTTTGGAGTACAAA+AGG | - | chr4.3:51041604-51041623 | None:intergenic | 35.0% |
| AACACCTTGAACACAGATAC+TGG | - | chr4.3:51039314-51039333 | None:intergenic | 40.0% | |
| AACTTGGTTCCTATCAACAC+CGG | - | chr4.3:51040124-51040143 | None:intergenic | 40.0% | |
| ACAGGCAAGAACATATGCAA+AGG | + | chr4.3:51042096-51042115 | MS.gene95545:intron | 40.0% | |
| AGAAGCAAGGAAATGGAATC+AGG | + | chr4.3:51040002-51040021 | MS.gene95545:CDS | 40.0% | |
| AGCTCCCTATTGATATGCAA+TGG | + | chr4.3:51040158-51040177 | MS.gene95545:CDS | 40.0% | |
| ATCACCTGCTTATAGCATAG+TGG | + | chr4.3:51041052-51041071 | MS.gene95545:intron | 40.0% | |
| ATTGTTGTAGACGGCAATTC+CGG | + | chr4.3:51040102-51040121 | MS.gene95545:intron | 40.0% | |
| CAAAACTCTTCGACTTACCT+TGG | + | chr4.3:51042194-51042213 | MS.gene95545:CDS | 40.0% | |
| CAAGTCGATGCACATTAAAC+AGG | + | chr4.3:51039687-51039706 | MS.gene95545:CDS | 40.0% | |
| CCACTATTGTCAGAAAAACG+TGG | - | chr4.3:51041635-51041654 | None:intergenic | 40.0% | |
| CGACTCATATAAAGGAACAG+AGG | - | chr4.3:51041496-51041515 | None:intergenic | 40.0% | |
| CGTTTGTTTGAATTGGCGTT+AGG | - | chr4.3:51040443-51040462 | None:intergenic | 40.0% | |
| GACAGTTAAAAAGGAACGGA+GGG | + | chr4.3:51041824-51041843 | MS.gene95545:intron | 40.0% | |
| GAGGAAAGGACCAAATCAAA+TGG | + | chr4.3:51039455-51039474 | MS.gene95545:CDS | 40.0% | |
| GATTCGGCGTTTGTTTGAAT+TGG | - | chr4.3:51040450-51040469 | None:intergenic | 40.0% | |
| GCAATGTCAATTCAGGTGAA+AGG | + | chr4.3:51040886-51040905 | MS.gene95545:intron | 40.0% | |
| GGGTATAGTATGCTATGCAT+TGG | - | chr4.3:51041540-51041559 | None:intergenic | 40.0% | |
| GGTACAAAGAAGCAAGGAAA+TGG | + | chr4.3:51039995-51040014 | MS.gene95545:CDS | 40.0% | |
| GTGTGCTTGATTGTTGTAGA+CGG | + | chr4.3:51040093-51040112 | MS.gene95545:intron | 40.0% | |
| GTTGGATATTAGACCGAGAT+CGG | + | chr4.3:51039748-51039767 | MS.gene95545:intron | 40.0% | |
| GTTGGGAATGAAAAAGAGCA+GGG | + | chr4.3:51039423-51039442 | MS.gene95545:CDS | 40.0% | |
| TACTCCAAAGTCCAAATGCA+TGG | + | chr4.3:51041608-51041627 | MS.gene95545:intron | 40.0% | |
| TATTTCCCACAATTACTCGG+GGG | - | chr4.3:51039850-51039869 | None:intergenic | 40.0% | |
| TCCTGATTTCACTGAAAACG+CGG | - | chr4.3:51040365-51040384 | None:intergenic | 40.0% | |
| TGACAGTTAAAAAGGAACGG+AGG | + | chr4.3:51041823-51041842 | MS.gene95545:intron | 40.0% | |
| TGTTGGGAATGAAAAAGAGC+AGG | + | chr4.3:51039422-51039441 | MS.gene95545:CDS | 40.0% | |
| TTATTAATGCGGTGAGTGTG+TGG | - | chr4.3:51041382-51041401 | None:intergenic | 40.0% | |
| TTCAGGTGAAAGGGATTGAT+AGG | + | chr4.3:51040896-51040915 | MS.gene95545:intron | 40.0% | |
| TTGTTGGGTGATTGCCAAAT+TGG | + | chr4.3:51039096-51039115 | MS.gene95545:CDS | 40.0% | |
| ! | CATGGACTGACTGCTTATAA+TGG | - | chr4.3:51041935-51041954 | None:intergenic | 40.0% |
| ! | CCACGTTTTTCTGACAATAG+TGG | + | chr4.3:51041632-51041651 | MS.gene95545:intron | 40.0% |
| ! | GACAAAACATTGGTTGTGAG+TGG | + | chr4.3:51039477-51039496 | MS.gene95545:CDS | 40.0% |
| !! | ACATAGATGTCGATTTGCTC+TGG | + | chr4.3:51041348-51041367 | MS.gene95545:intron | 40.0% |
| !! | AGTTGGTTCTGTAAGGTTGT+AGG | + | chr4.3:51040591-51040610 | MS.gene95545:intron | 40.0% |
| !! | ATTGTGGGAAATATCGACTC+TGG | + | chr4.3:51039857-51039876 | MS.gene95545:intron | 40.0% |
| !! | TATTAGTTGTGTCGGCTTGT+CGG | + | chr4.3:51039274-51039293 | MS.gene95545:intron | 40.0% |
| !! | TGCATTGGTTGCTGCAAATT+TGG | - | chr4.3:51041525-51041544 | None:intergenic | 40.0% |
| !! | TTGTGGGAAATATCGACTCT+GGG | + | chr4.3:51039858-51039877 | MS.gene95545:intron | 40.0% |
| AAAAACGTGGGCCATGCATT+TGG | - | chr4.3:51041622-51041641 | None:intergenic | 45.0% | |
| AATGGCATGTAAGGACTCAG+TGG | + | chr4.3:51039640-51039659 | MS.gene95545:CDS | 45.0% | |
| ACAGGAACACGACTAATCTG+AGG | - | chr4.3:51039188-51039207 | None:intergenic | 45.0% | |
| ACTGAGTCCTTACATGCCAT+TGG | - | chr4.3:51039641-51039660 | None:intergenic | 45.0% | |
| ACTTACCTTGGACAGTGGAA+AGG | + | chr4.3:51042206-51042225 | MS.gene95545:CDS | 45.0% | |
| AGATTCCTTTCCACTGTCCA+AGG | - | chr4.3:51042214-51042233 | None:intergenic | 45.0% | |
| ATATGCATGGGATCCACAAG+TGG | - | chr4.3:51041080-51041099 | None:intergenic | 45.0% | |
| ATCAGAAGACCAGCTTCCAA+TGG | + | chr4.3:51039622-51039641 | MS.gene95545:CDS | 45.0% | |
| ATGTACCCCCGAGTAATTGT+GGG | + | chr4.3:51039842-51039861 | MS.gene95545:intron | 45.0% | |
| CACAGATACTGGACACAACA+CGG | - | chr4.3:51039303-51039322 | None:intergenic | 45.0% | |
| GAATGAAAAAGAGCAGGGAG+TGG | + | chr4.3:51039428-51039447 | MS.gene95545:CDS | 45.0% | |
| GAGATGGCAATGCTGAATGT+GGG | - | chr4.3:51038975-51038994 | None:intergenic | 45.0% | |
| GTGTCCAGTATCTGTGTTCA+AGG | + | chr4.3:51039307-51039326 | MS.gene95545:intron | 45.0% | |
| TATGTACCCCCGAGTAATTG+TGG | + | chr4.3:51039841-51039860 | MS.gene95545:intron | 45.0% | |
| TGGGATGGTACAAAGAAGCA+AGG | + | chr4.3:51039989-51040008 | MS.gene95545:CDS | 45.0% | |
| TGGTTGCAGAGAAGTTTCGA+CGG | - | chr4.3:51039022-51039041 | None:intergenic | 45.0% | |
| ! | TCCGCGTTTTCAGTGAAATC+AGG | + | chr4.3:51040361-51040380 | MS.gene95545:intron | 45.0% |
| !! | GTTGTGATTTTGACCTCACG+TGG | - | chr4.3:51040336-51040355 | None:intergenic | 45.0% |
| !! | TGTGTAGCGTTGATGGTAGT+TGG | + | chr4.3:51039730-51039749 | MS.gene95545:intron | 45.0% |
| AGCGATTACCTCACTAGCGA+TGG | - | chr4.3:51040185-51040204 | None:intergenic | 50.0% | |
| ATCTCCGGAGCAACGATACA+CGG | - | chr4.3:51038873-51038892 | None:intergenic | 50.0% | |
| ATTCAGCATTGCCATCTCCG+CGG | + | chr4.3:51038977-51038996 | MS.gene95545:CDS | 50.0% | |
| CCAGCTTCCAATGGCATGTA+AGG | + | chr4.3:51039631-51039650 | MS.gene95545:CDS | 50.0% | |
| CCTTACATGCCATTGGAAGC+TGG | - | chr4.3:51039634-51039653 | None:intergenic | 50.0% | |
| CTGTACGTAGCATTAGCACC+GGG | - | chr4.3:51038943-51038962 | None:intergenic | 50.0% | |
| CTTCGACTTACCTTGGACAG+TGG | + | chr4.3:51042201-51042220 | MS.gene95545:CDS | 50.0% | |
| GAAAATCCGTCTTGAGGCTG+TGG | + | chr4.3:51040299-51040318 | MS.gene95545:intron | 50.0% | |
| GAATTCACGCATTCACGCAG+AGG | - | chr4.3:51041874-51041893 | None:intergenic | 50.0% | |
| GAGCTCGAAGGATACATCTC+CGG | - | chr4.3:51038888-51038907 | None:intergenic | 50.0% | |
| GCGTGAATGCGTGAATTCAC+TGG | + | chr4.3:51041876-51041895 | MS.gene95545:intron | 50.0% | |
| GCTGTACGTAGCATTAGCAC+CGG | - | chr4.3:51038944-51038963 | None:intergenic | 50.0% | |
| GGAGATGGCAATGCTGAATG+TGG | - | chr4.3:51038976-51038995 | None:intergenic | 50.0% | |
| GGCACCACTATGCTATAAGC+AGG | - | chr4.3:51041059-51041078 | None:intergenic | 50.0% | |
| TGGGCCATGCATTTGGACTT+TGG | - | chr4.3:51041615-51041634 | None:intergenic | 50.0% | |
| TTGCAGAGAAGTTTCGACGG+TGG | - | chr4.3:51039019-51039038 | None:intergenic | 50.0% | |
| ! | CGGAATGTGTGTAGCGTTGA+TGG | + | chr4.3:51039723-51039742 | MS.gene95545:intron | 50.0% |
| !! | ACGGCAATTCCGGTGTTGAT+AGG | + | chr4.3:51040112-51040131 | MS.gene95545:CDS | 50.0% |
| !! | TAGCATAGTGGTGCCACTTG+TGG | + | chr4.3:51041064-51041083 | MS.gene95545:intron | 50.0% |
| AAGAGCAGGGAGTGGAACAG+AGG | + | chr4.3:51039436-51039455 | MS.gene95545:CDS | 55.0% | |
| AATCCGTCTTGAGGCTGTGG+CGG | + | chr4.3:51040302-51040321 | MS.gene95545:intron | 55.0% | |
| ACACGACACGTGTCTGACAC+AGG | - | chr4.3:51039206-51039225 | None:intergenic | 55.0% | |
| ACAGCCGTGTATCGTTGCTC+CGG | + | chr4.3:51038866-51038885 | MS.gene95545:CDS | 55.0% | |
| CAGGGAGTGGAACAGAGGAA+AGG | + | chr4.3:51039441-51039460 | MS.gene95545:CDS | 55.0% | |
| GCAATGGACCATCGCTAGTG+AGG | + | chr4.3:51040174-51040193 | MS.gene95545:CDS | 55.0% | |
| GCGAATGTGGGCCATGCATT+TGG | - | chr4.3:51041686-51041705 | None:intergenic | 55.0% | |
| TGGGTAGGCTTGTCTCCCTT+AGG | - | chr4.3:51041974-51041993 | None:intergenic | 55.0% | |
| TTCAGCATTGCCATCTCCGC+GGG | + | chr4.3:51038978-51038997 | MS.gene95545:CDS | 55.0% | |
| TTCCAGAGCAGGCAAGCAGT+CGG | - | chr4.3:51038915-51038934 | None:intergenic | 55.0% | |
| ! | CTCGGGGGTACATAAGTGAC+CGG | - | chr4.3:51039835-51039854 | None:intergenic | 55.0% |
| AAGCCTCCTTCGCAGCGCAA+AGG | - | chr4.3:51038845-51038864 | None:intergenic | 60.0% | |
| ACTCCTTTGCGCTGCGAAGG+AGG | + | chr4.3:51038839-51038858 | MS.gene95545:CDS | 60.0% | |
| GAATCCAACAGCGAAGCCCG+CGG | - | chr4.3:51038997-51039016 | None:intergenic | 60.0% | |
| GTCACTCCTTTGCGCTGCGA+AGG | + | chr4.3:51038836-51038855 | MS.gene95545:CDS | 60.0% | |
| ! | GGGGGTACATAAGTGACCGG+TGG | - | chr4.3:51039832-51039851 | None:intergenic | 60.0% |
| AACAGCGAAGCCCGCGGAGA+TGG | - | chr4.3:51038991-51039010 | None:intergenic | 65.0% | |
| ATCTCCGCGGGCTTCGCTGT+TGG | + | chr4.3:51038990-51039009 | MS.gene95545:CDS | 65.0% | |
| CCACCGCCACAGCCTCAAGA+CGG | - | chr4.3:51040308-51040327 | None:intergenic | 65.0% | |
| CGTCTTGAGGCTGTGGCGGT+GGG | + | chr4.3:51040306-51040325 | MS.gene95545:intron | 65.0% | |
| GCAGTCGGTGCAGAGCTCGA+AGG | - | chr4.3:51038900-51038919 | None:intergenic | 65.0% | |
| GGCGGTGGGAATTCCACGTG+AGG | + | chr4.3:51040320-51040339 | MS.gene95545:intron | 65.0% | |
| ! | ACCGGGCTGCTTTCCAGAGC+AGG | - | chr4.3:51038926-51038945 | None:intergenic | 65.0% |
| ! | CACCGACTGCTTGCCTGCTC+TGG | + | chr4.3:51038910-51038929 | MS.gene95545:CDS | 65.0% |
| !! | GCCTGCTCTGGAAAGCAGCC+CGG | + | chr4.3:51038922-51038941 | MS.gene95545:CDS | 65.0% |
| CCGTCTTGAGGCTGTGGCGG+TGG | + | chr4.3:51040305-51040324 | MS.gene95545:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 51038811 | 51042264 | 51038811 | ID=MS.gene95545 |
| chr4.3 | mRNA | 51038811 | 51042264 | 51038811 | ID=MS.gene95545.t1;Parent=MS.gene95545 |
| chr4.3 | exon | 51038811 | 51039134 | 51038811 | ID=MS.gene95545.t1.exon1;Parent=MS.gene95545.t1 |
| chr4.3 | CDS | 51038811 | 51039134 | 51038811 | ID=cds.MS.gene95545.t1;Parent=MS.gene95545.t1 |
| chr4.3 | exon | 51039414 | 51039534 | 51039414 | ID=MS.gene95545.t1.exon2;Parent=MS.gene95545.t1 |
| chr4.3 | CDS | 51039414 | 51039534 | 51039414 | ID=cds.MS.gene95545.t1;Parent=MS.gene95545.t1 |
| chr4.3 | exon | 51039612 | 51039708 | 51039612 | ID=MS.gene95545.t1.exon3;Parent=MS.gene95545.t1 |
| chr4.3 | CDS | 51039612 | 51039708 | 51039612 | ID=cds.MS.gene95545.t1;Parent=MS.gene95545.t1 |
| chr4.3 | exon | 51039984 | 51040023 | 51039984 | ID=MS.gene95545.t1.exon4;Parent=MS.gene95545.t1 |
| chr4.3 | CDS | 51039984 | 51040023 | 51039984 | ID=cds.MS.gene95545.t1;Parent=MS.gene95545.t1 |
| chr4.3 | exon | 51040112 | 51040195 | 51040112 | ID=MS.gene95545.t1.exon5;Parent=MS.gene95545.t1 |
| chr4.3 | CDS | 51040112 | 51040195 | 51040112 | ID=cds.MS.gene95545.t1;Parent=MS.gene95545.t1 |
| chr4.3 | exon | 51042100 | 51042264 | 51042100 | ID=MS.gene95545.t1.exon6;Parent=MS.gene95545.t1 |
| chr4.3 | CDS | 51042100 | 51042264 | 51042100 | ID=cds.MS.gene95545.t1;Parent=MS.gene95545.t1 |
| Gene Sequence |
| Protein sequence |
