Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95558.t1 | XP_003605929.1 | 98.4 | 898 | 14 | 0 | 1 | 898 | 82 | 979 | 0.00E+00 | 1801.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95558.t1 | P49608 | 90.9 | 898 | 82 | 0 | 1 | 898 | 1 | 898 | 0.0e+00 | 1683.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95558.t1 | G7JDJ4 | 98.4 | 898 | 14 | 0 | 1 | 898 | 82 | 979 | 0.0e+00 | 1801.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene56790 | MS.gene95558 | PPI |
| MS.gene32746 | MS.gene95558 | PPI |
| MS.gene95558 | MS.gene90508 | PPI |
| MS.gene95558 | MS.gene02695 | PPI |
| MS.gene014952 | MS.gene95558 | PPI |
| MS.gene95558 | MS.gene42646 | PPI |
| MS.gene95558 | MS.gene011805 | PPI |
| MS.gene99212 | MS.gene95558 | PPI |
| MS.gene041065 | MS.gene95558 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95558.t1 | MTR_4g048190 | 98.441 | 898 | 14 | 0 | 1 | 898 | 82 | 979 | 0.0 | 1839 |
| MS.gene95558.t1 | MTR_2g088360 | 92.977 | 897 | 63 | 0 | 2 | 898 | 83 | 979 | 0.0 | 1751 |
| MS.gene95558.t1 | MTR_5g022940 | 84.392 | 897 | 139 | 1 | 1 | 896 | 1 | 897 | 0.0 | 1607 |
| MS.gene95558.t1 | MTR_1g075520 | 77.086 | 899 | 198 | 2 | 1 | 898 | 4 | 895 | 0.0 | 1456 |
| MS.gene95558.t1 | MTR_5g022940 | 84.741 | 793 | 121 | 0 | 104 | 896 | 1 | 793 | 0.0 | 1433 |
| MS.gene95558.t1 | MTR_2g067620 | 82.465 | 576 | 63 | 6 | 55 | 612 | 134 | 689 | 0.0 | 924 |
| MS.gene95558.t1 | MTR_2g067620 | 73.494 | 166 | 14 | 1 | 763 | 898 | 700 | 865 | 1.67e-67 | 242 |
| MS.gene95558.t1 | MTR_4g115490 | 62.500 | 144 | 28 | 2 | 579 | 721 | 154 | 272 | 1.90e-49 | 176 |
| MS.gene95558.t1 | MTR_4g074000 | 42.308 | 130 | 62 | 2 | 701 | 817 | 1 | 130 | 3.03e-22 | 96.7 |
| MS.gene95558.t1 | MTR_1g045750 | 24.938 | 401 | 219 | 13 | 183 | 570 | 166 | 497 | 7.51e-17 | 85.1 |
| MS.gene95558.t1 | MTR_1g073200 | 25.558 | 403 | 232 | 13 | 183 | 570 | 170 | 519 | 2.52e-13 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95558.t1 | AT2G05710 | 90.089 | 898 | 89 | 0 | 1 | 898 | 93 | 990 | 0.0 | 1706 |
| MS.gene95558.t1 | AT4G35830 | 84.076 | 898 | 143 | 0 | 1 | 898 | 1 | 898 | 0.0 | 1608 |
| MS.gene95558.t1 | AT4G26970 | 82.905 | 895 | 153 | 0 | 1 | 895 | 98 | 992 | 0.0 | 1581 |
| MS.gene95558.t1 | AT4G35830 | 84.025 | 795 | 127 | 0 | 104 | 898 | 1 | 795 | 0.0 | 1425 |
| MS.gene95558.t1 | AT5G54950 | 64.516 | 62 | 22 | 0 | 821 | 882 | 1 | 62 | 1.18e-21 | 90.1 |
| MS.gene95558.t1 | AT4G13430 | 25.909 | 440 | 235 | 15 | 144 | 570 | 140 | 501 | 1.94e-17 | 87.0 |
Find 244 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAACAAAGTTGGGTTTA+AGG | 0.199704 | 4.3:+50826764 | MS.gene95558:CDS |
| AAGCCAGGTGGTGGCGAATT+TGG | 0.203158 | 4.3:+50823650 | MS.gene95558:CDS |
| CGCAAGGACTTCAATTCTTA+TGG | 0.210088 | 4.3:+50830401 | MS.gene95558:CDS |
| GGCTCACGAGCTTGGTTTGC+AGG | 0.214167 | 4.3:+50827855 | MS.gene95558:CDS |
| CACTCACCTCTGCAATTTCT+TGG | 0.269923 | 4.3:-50829971 | None:intergenic |
| CTAGTTGTTCCTCCTGGTTC+TGG | 0.272430 | 4.3:+50825396 | MS.gene95558:CDS |
| CGGAAATTATTACCGATTCT+TGG | 0.286253 | 4.3:-50823704 | None:intergenic |
| ACCTGCTCGTGTTCTCTTGC+AGG | 0.289713 | 4.3:+50824627 | MS.gene95558:CDS |
| TGCCAAGGGGCCAATGTTAT+TGG | 0.298198 | 4.3:+50831081 | MS.gene95558:CDS |
| AAATGCAGTGCAGGCTAATA+TGG | 0.299347 | 4.3:+50825302 | MS.gene95558:CDS |
| GTTGGAATGTGAACTGTCTT+AGG | 0.299694 | 4.3:-50830512 | None:intergenic |
| GTAGCAGCTGCTGTGTTGTC+TGG | 0.301206 | 4.3:+50828466 | MS.gene95558:CDS |
| ACAACATGTATTGGCAATTC+AGG | 0.302030 | 4.3:+50828240 | MS.gene95558:CDS |
| TGTCAGAGATACAAGACTTC+TGG | 0.302516 | 4.3:+50830998 | MS.gene95558:intron |
| GTTGTTGCTTATGCTCTTGC+TGG | 0.304994 | 4.3:+50828556 | MS.gene95558:CDS |
| CATATCAGCCGCAACAAGAT+AGG | 0.312149 | 4.3:+50826511 | MS.gene95558:intron |
| GAATAGGAACCTTACCTCTT+TGG | 0.312837 | 4.3:-50826591 | None:intergenic |
| CCCATGGTGGCACCATATTC+AGG | 0.318308 | 4.3:-50826190 | None:intergenic |
| CAGTTGTGACTTTGACATCT+TGG | 0.320850 | 4.3:-50831401 | None:intergenic |
| TCTGCAATTTCTTGGGTAGA+TGG | 0.321071 | 4.3:-50829963 | None:intergenic |
| ATAGATGGGCTTGGTGTTGC+TGG | 0.324737 | 4.3:+50825611 | MS.gene95558:CDS |
| ATGTCTACCTCAGGGATATC+TGG | 0.325499 | 4.3:+50829940 | MS.gene95558:CDS |
| GCTTCTGCCATCTCAGAAAA+TGG | 0.328847 | 4.3:+50828282 | MS.gene95558:CDS |
| TTACAATATCTCAAGCTAAC+TGG | 0.332615 | 4.3:+50826238 | MS.gene95558:CDS |
| TCACATACAACTATGATAGA+TGG | 0.333043 | 4.3:+50825596 | MS.gene95558:CDS |
| GGCTGGTCTTGTAGCGAAAA+AGG | 0.338637 | 4.3:+50827834 | MS.gene95558:CDS |
| GTGCTGGCTGGTGCTGAGTA+TGG | 0.344823 | 4.3:+50831034 | MS.gene95558:CDS |
| GTTGTTGGGTTCAAGCTATC+TGG | 0.346551 | 4.3:+50825902 | MS.gene95558:CDS |
| GCTAACATGTCTCCTGAATA+TGG | 0.350699 | 4.3:+50826178 | MS.gene95558:CDS |
| TATCCCTGAGGTAGACATTC+TGG | 0.354915 | 4.3:-50829935 | None:intergenic |
| GGTGTTGCTGGATGGGGTGT+TGG | 0.360360 | 4.3:+50825623 | MS.gene95558:CDS |
| TGGGCTTGGTGTTGCTGGAT+GGG | 0.362103 | 4.3:+50825616 | MS.gene95558:CDS |
| CAGGTCAATCTTGAATATCT+TGG | 0.365775 | 4.3:+50825515 | MS.gene95558:intron |
| AGTATGGCAGTGGAAGTTCT+AGG | 0.365798 | 4.3:+50831050 | MS.gene95558:CDS |
| TTGTTAACAAGCTCGTAAAC+GGG | 0.368970 | 4.3:+50830480 | MS.gene95558:CDS |
| CCATCCTTCCCCGTCCCAAT+TGG | 0.372416 | 4.3:-50829912 | None:intergenic |
| CTTGTTAACAAGCTCGTAAA+CGG | 0.384370 | 4.3:+50830479 | MS.gene95558:CDS |
| CAACATCTTCTTTAGTGACT+TGG | 0.386503 | 4.3:-50824549 | None:intergenic |
| TGCTTATGCTCTTGCTGGCT+CGG | 0.388614 | 4.3:+50828561 | MS.gene95558:CDS |
| CTGCCATGCTTGAGCTCTGC+TGG | 0.392665 | 4.3:-50827751 | None:intergenic |
| AGGAGAATTCTAATCGAGTA+TGG | 0.397433 | 4.3:-50824496 | None:intergenic |
| AGTGCCCGCCGTTGTTGACT+TGG | 0.399350 | 4.3:+50824755 | MS.gene95558:CDS |
| CAGCTGACACTCTCTACTCT+TGG | 0.399837 | 4.3:+50830180 | MS.gene95558:CDS |
| CTATCTTGCCTCACCTCCTC+TGG | 0.404253 | 4.3:+50828534 | MS.gene95558:CDS |
| ATGAGTTTACGTATGACATA+TGG | 0.407138 | 4.3:-50831639 | None:intergenic |
| CAATTCTTATGGAAGTCGTC+GGG | 0.408766 | 4.3:+50830412 | MS.gene95558:CDS |
| ACAAGTCTTGCTCCAGGCTC+TGG | 0.409104 | 4.3:+50828017 | MS.gene95558:CDS |
| TATCCCTCTTTGCTACAAAC+CGG | 0.410420 | 4.3:+50831293 | MS.gene95558:CDS |
| CTTTCAAAGGCACACGGTCG+TGG | 0.415053 | 4.3:-50826713 | None:intergenic |
| GACTTTGAGAAGGAGCCAAT+TGG | 0.416055 | 4.3:+50829897 | MS.gene95558:CDS |
| ATGGGCTTGGTGTTGCTGGA+TGG | 0.419549 | 4.3:+50825615 | MS.gene95558:CDS |
| ACTCACCTCTGCAATTTCTT+GGG | 0.419892 | 4.3:-50829970 | None:intergenic |
| CAAACCCAAGTGTTATGCTT+GGG | 0.423891 | 4.3:+50827812 | MS.gene95558:CDS |
| CTCTATCCTGACAGTGTGGT+TGG | 0.425659 | 4.3:+50825566 | MS.gene95558:CDS |
| CTTGTTAAGTTTCCCTTGAA+AGG | 0.433664 | 4.3:-50823620 | None:intergenic |
| CTCTTTGGTCCTGAGATACA+TGG | 0.434528 | 4.3:-50826576 | None:intergenic |
| CAGTGGAAGTTCTAGGGATT+GGG | 0.436396 | 4.3:+50831057 | MS.gene95558:CDS |
| GGGCTTGGTGTTGCTGGATG+GGG | 0.436432 | 4.3:+50825617 | MS.gene95558:CDS |
| GTTGCTGGATGGGGTGTTGG+AGG | 0.436620 | 4.3:+50825626 | MS.gene95558:CDS |
| TTCTAGGGATTGGGCTGCCA+AGG | 0.439338 | 4.3:+50831066 | MS.gene95558:CDS |
| ATGGATCCTCCTGGGTCTCA+TGG | 0.441324 | 4.3:+50830254 | MS.gene95558:CDS |
| GAGGAACAACTAGCATGTTA+TGG | 0.442351 | 4.3:-50825386 | None:intergenic |
| GTCAGAGATACAAGACTTCT+GGG | 0.442448 | 4.3:+50830999 | MS.gene95558:intron |
| ATGGTCATGTTCTTGAAGTA+TGG | 0.442787 | 4.3:-50830233 | None:intergenic |
| GCAGTGGAAGTTCTAGGGAT+TGG | 0.445972 | 4.3:+50831056 | MS.gene95558:CDS |
| TGGTTCTGGTATAGTACATC+AGG | 0.450673 | 4.3:+50825410 | MS.gene95558:CDS |
| GCGTGTCTTGATAACAAAGT+TGG | 0.450840 | 4.3:+50826756 | MS.gene95558:CDS |
| GAGAAGGAGCCAATTGGGAC+GGG | 0.455659 | 4.3:+50829903 | MS.gene95558:CDS |
| TCTATCCTGACAGTGTGGTT+GGG | 0.455891 | 4.3:+50825567 | MS.gene95558:CDS |
| CGAAGTAACTTGGTAGGAAT+GGG | 0.457127 | 4.3:+50831267 | MS.gene95558:CDS |
| CGTGTCTTGATAACAAAGTT+GGG | 0.457661 | 4.3:+50826757 | MS.gene95558:CDS |
| CACCAATAACATTGGCCCCT+TGG | 0.459214 | 4.3:-50831083 | None:intergenic |
| TTCAAATAAAATCAATCCTC+TGG | 0.461087 | 4.3:+50824815 | MS.gene95558:CDS |
| CCAGGCAAAACCATGCTCAT+AGG | 0.461883 | 4.3:-50825878 | None:intergenic |
| AGCGAGTGAAAATCCTTTCA+AGG | 0.462520 | 4.3:+50823607 | MS.gene95558:intron |
| CCAATTGGGACGGGGAAGGA+TGG | 0.463387 | 4.3:+50829912 | MS.gene95558:CDS |
| ACTTTGAGAAGGAGCCAATT+GGG | 0.463916 | 4.3:+50829898 | MS.gene95558:CDS |
| TCGAAGTAACTTGGTAGGAA+TGG | 0.466475 | 4.3:+50831266 | MS.gene95558:CDS |
| GGTATCAAAGCGTGCTATGC+AGG | 0.467051 | 4.3:-50831442 | None:intergenic |
| TACTGTCACCAAAGTTTAGC+AGG | 0.468344 | 4.3:-50830295 | None:intergenic |
| AACATGCTAGTTGTTCCTCC+TGG | 0.469261 | 4.3:+50825390 | MS.gene95558:CDS |
| CCTGAATATGGTGCCACCAT+GGG | 0.471961 | 4.3:+50826190 | MS.gene95558:CDS |
| AATTCGCCACCACCTGGCTT+AGG | 0.472327 | 4.3:-50823647 | None:intergenic |
| CGATGATAGAGTCTTATCTC+AGG | 0.472591 | 4.3:+50826364 | MS.gene95558:CDS |
| ATGGCCAGAATGTCTACCTC+AGG | 0.474929 | 4.3:+50829931 | MS.gene95558:CDS |
| CAACATGTATTGGCAATTCA+GGG | 0.476725 | 4.3:+50828241 | MS.gene95558:CDS |
| TGGTCAACGACTAGATCAAC+AGG | 0.477579 | 4.3:-50825249 | None:intergenic |
| GGGGAGGATGCAGACACATT+GGG | 0.478077 | 4.3:+50831315 | MS.gene95558:CDS |
| ACCAAAGTTTAGCAGGCAAT+AGG | 0.479269 | 4.3:-50830288 | None:intergenic |
| TCAGTCCCAACCACACTGTC+AGG | 0.479411 | 4.3:-50825572 | None:intergenic |
| TTTCAAAGGCACACGGTCGT+GGG | 0.479496 | 4.3:-50826712 | None:intergenic |
| ACCGATCATATTTCTCCAGC+TGG | 0.481229 | 4.3:+50830323 | MS.gene95558:CDS |
| GGGATTTGCTATACCAAAAG+AGG | 0.485512 | 4.3:+50827690 | MS.gene95558:intron |
| CTTAGAAAGCATGGTGCTGT+AGG | 0.486270 | 4.3:+50825980 | MS.gene95558:CDS |
| TGAGGCAGCAATGCTCGGTC+AGG | 0.487131 | 4.3:+50825658 | MS.gene95558:CDS |
| AGCTGACACTCTCTACTCTT+GGG | 0.487717 | 4.3:+50830181 | MS.gene95558:CDS |
| AGTTGCGAATGGCGGATTCA+AGG | 0.488008 | 4.3:-50824516 | None:intergenic |
| CTTGCAGTTTGTTCCACATA+GGG | 0.488178 | 4.3:-50830154 | None:intergenic |
| CGTTTACGAGCTTGTTAACA+AGG | 0.488278 | 4.3:-50830478 | None:intergenic |
| TTTGGCTGTACAACATGTAT+TGG | 0.492336 | 4.3:+50828231 | MS.gene95558:CDS |
| CAAGACACCATTGTGCTGGC+TGG | 0.492546 | 4.3:+50831022 | MS.gene95558:CDS |
| TATGTACTTCGGAACATGTC+AGG | 0.493929 | 4.3:-50830110 | None:intergenic |
| GTGACTTTGACATCTTGGCC+AGG | 0.494276 | 4.3:-50831396 | None:intergenic |
| ATCCCTCTTTGCTACAAACC+GGG | 0.495205 | 4.3:+50831294 | MS.gene95558:CDS |
| AAATGATGAGGTGATGGCGA+GGG | 0.495779 | 4.3:+50830436 | MS.gene95558:CDS |
| TGCTATACCAAAAGAGGCAC+AGG | 0.497558 | 4.3:+50827696 | MS.gene95558:CDS |
| TGTAATGTAACGTGATCCAC+AGG | 0.499453 | 4.3:-50826220 | None:intergenic |
| GCAGACACATTGGGATTGAC+TGG | 0.499598 | 4.3:+50831324 | MS.gene95558:CDS |
| TAGCAGCTGCTGTGTTGTCT+GGG | 0.503023 | 4.3:+50828467 | MS.gene95558:CDS |
| CAGTTCAAGTTGATGTTGCA+AGG | 0.503537 | 4.3:+50825274 | MS.gene95558:CDS |
| TCAGCCTTCATTTCTTTCAA+AGG | 0.504379 | 4.3:-50826726 | None:intergenic |
| TGAAAGAAATGAAGGCTGAC+TGG | 0.505538 | 4.3:+50826730 | MS.gene95558:CDS |
| TACAATATCTCAAGCTAACT+GGG | 0.505582 | 4.3:+50826239 | MS.gene95558:CDS |
| GCTGGTGCTGAGTATGGCAG+TGG | 0.505917 | 4.3:+50831040 | MS.gene95558:CDS |
| CAACATCAACTTGAACTGAA+TGG | 0.506430 | 4.3:-50825269 | None:intergenic |
| GAAATTATCGCAGTTGCGAA+TGG | 0.508436 | 4.3:-50824527 | None:intergenic |
| CCAAGTGTTATGCTTGGGGC+TGG | 0.508975 | 4.3:+50827817 | MS.gene95558:CDS |
| GCCTATTGCCTGCTAAACTT+TGG | 0.509924 | 4.3:+50830287 | MS.gene95558:CDS |
| ATGTTGAGAAGATTATTGAC+TGG | 0.511410 | 4.3:+50824566 | MS.gene95558:CDS |
| AGCTTGAACCCAACAACTCC+AGG | 0.512315 | 4.3:-50825896 | None:intergenic |
| TGGGCAAGACACCATTGTGC+TGG | 0.512533 | 4.3:+50831018 | MS.gene95558:CDS |
| CTTGTTAACAAGGCGAATGT+TGG | 0.512774 | 4.3:-50830468 | None:intergenic |
| TTAGTAACAACTCCAGAGCC+TGG | 0.513461 | 4.3:-50828029 | None:intergenic |
| TTGGAATGTGAACTGTCTTA+GGG | 0.513630 | 4.3:-50830511 | None:intergenic |
| AAGCTCGTAAACGGGGAAGT+TGG | 0.513788 | 4.3:+50830488 | MS.gene95558:CDS |
| AAAATCAGTGAGATCAAGCC+TGG | 0.514843 | 4.3:+50831378 | MS.gene95558:CDS |
| AATGTGTCTGCATCCTCCCC+CGG | 0.515271 | 4.3:-50831312 | None:intergenic |
| AAGACAGTTCACATTCCAAC+TGG | 0.516144 | 4.3:+50830515 | MS.gene95558:CDS |
| TTTCCAAATTCGCCACCACC+TGG | 0.521732 | 4.3:-50823653 | None:intergenic |
| CAAGCCAAGTCAACAACGGC+GGG | 0.522105 | 4.3:-50824759 | None:intergenic |
| GAACTTGCATACTTCAACCA+TGG | 0.524044 | 4.3:+50831606 | MS.gene95558:CDS |
| TCTCTGAATGATCCAAGAAT+CGG | 0.524068 | 4.3:+50823692 | MS.gene95558:CDS |
| TCCTGAATATGGTGCCACCA+TGG | 0.525236 | 4.3:+50826189 | MS.gene95558:CDS |
| CGAGATGCTATGAATAAGCT+TGG | 0.525873 | 4.3:+50824786 | MS.gene95558:CDS |
| ATGCTTGCAGCCTATGAGCA+TGG | 0.526901 | 4.3:+50825868 | MS.gene95558:intron |
| GTTCAACCCCACGCTCTAGT+AGG | 0.527414 | 4.3:-50830379 | None:intergenic |
| CACATACAACTATGATAGAT+GGG | 0.529419 | 4.3:+50825597 | MS.gene95558:CDS |
| GACGTAGAACCATGTATCTC+AGG | 0.529558 | 4.3:+50826567 | MS.gene95558:CDS |
| TGTTGAGAAGATTATTGACT+GGG | 0.531470 | 4.3:+50824567 | MS.gene95558:CDS |
| TACATGGTTCTACGTCGGAC+AGG | 0.533933 | 4.3:-50826560 | None:intergenic |
| TCTAGGGATTGGGCTGCCAA+GGG | 0.534595 | 4.3:+50831067 | MS.gene95558:CDS |
| TCTAGTAGGTATTTAGCAGC+AGG | 0.535650 | 4.3:-50830365 | None:intergenic |
| TCAAACCCAAGTGTTATGCT+TGG | 0.536303 | 4.3:+50827811 | MS.gene95558:CDS |
| TCCTTGTTAATACTTCCAGC+TGG | 0.537299 | 4.3:-50830338 | None:intergenic |
| ACATAAAGCTTCTCACCAGT+TGG | 0.537679 | 4.3:-50830530 | None:intergenic |
| AAATCTGCAGAATGGTGTTA+CGG | 0.539268 | 4.3:+50825925 | MS.gene95558:CDS |
| TCTGTTTGTTGACTATAATG+AGG | 0.539417 | 4.3:+50826395 | MS.gene95558:CDS |
| AGAACACGAGCAGGTTTGAA+AGG | 0.542844 | 4.3:-50824619 | None:intergenic |
| ATATCAGCCGCAACAAGATA+GGG | 0.543408 | 4.3:+50826512 | MS.gene95558:intron |
| AAGGTCAGAAAATGCAGTGC+AGG | 0.545347 | 4.3:+50825293 | MS.gene95558:CDS |
| GAAGCTGAGGCAGCAATGCT+CGG | 0.545462 | 4.3:+50825653 | MS.gene95558:CDS |
| TCAATTCTTATGGAAGTCGT+CGG | 0.548175 | 4.3:+50830411 | MS.gene95558:CDS |
| TCACAAAGGGTAACCCTATG+TGG | 0.548614 | 4.3:+50830141 | MS.gene95558:CDS |
| GAGAATTCATCGAAGTAACT+TGG | 0.551858 | 4.3:+50831257 | MS.gene95558:CDS |
| CAACCAGCAGAGCTCAAGCA+TGG | 0.552119 | 4.3:+50827748 | MS.gene95558:CDS |
| CTAAATACCTACTAGAGCGT+GGG | 0.552519 | 4.3:+50830372 | MS.gene95558:CDS |
| GGAGCCAATTGGGACGGGGA+AGG | 0.553046 | 4.3:+50829908 | MS.gene95558:CDS |
| TTCATGAATATATGTTGAGT+TGG | 0.553927 | 4.3:-50830207 | None:intergenic |
| CAAGAGTAGAGAGTGTCAGC+TGG | 0.554037 | 4.3:-50830179 | None:intergenic |
| ACCTGCAAGAGAACACGAGC+AGG | 0.556432 | 4.3:-50824628 | None:intergenic |
| CCAGCCCCAAGCATAACACT+TGG | 0.556722 | 4.3:-50827817 | None:intergenic |
| TTAGAAAGCATGGTGCTGTA+GGG | 0.557146 | 4.3:+50825981 | MS.gene95558:CDS |
| CAATCTTGAATATCTTGGAC+GGG | 0.562003 | 4.3:+50825520 | MS.gene95558:CDS |
| AACATGACCATGGATCCTCC+TGG | 0.562948 | 4.3:+50830245 | MS.gene95558:CDS |
| TGAGAAGGAGCCAATTGGGA+CGG | 0.564221 | 4.3:+50829902 | MS.gene95558:CDS |
| GTTAAAACAAGTCTTGCTCC+AGG | 0.564245 | 4.3:+50828011 | MS.gene95558:CDS |
| AGAGCGTGGGGTTGAACGCA+AGG | 0.564248 | 4.3:+50830385 | MS.gene95558:CDS |
| AATGATGAGGTGATGGCGAG+GGG | 0.566434 | 4.3:+50830437 | MS.gene95558:CDS |
| ATGAGACCCAGGAGGATCCA+TGG | 0.568517 | 4.3:-50830252 | None:intergenic |
| CAAAAGTATCTAAATGAACA+AGG | 0.572306 | 4.3:+50828192 | MS.gene95558:CDS |
| TCGGGGAAATGATGAGGTGA+TGG | 0.575160 | 4.3:+50830430 | MS.gene95558:CDS |
| GAAATGATGAGGTGATGGCG+AGG | 0.575429 | 4.3:+50830435 | MS.gene95558:CDS |
| ACTTGCAGTTTGTTCCACAT+AGG | 0.578259 | 4.3:-50830155 | None:intergenic |
| GCTAAATACCTACTAGAGCG+TGG | 0.578813 | 4.3:+50830371 | MS.gene95558:CDS |
| GGTTGACATTGACTTTGAGA+AGG | 0.579703 | 4.3:+50829887 | MS.gene95558:intron |
| ACATACGAGTCTATCACAAA+GGG | 0.580000 | 4.3:+50830128 | MS.gene95558:CDS |
| GTATGGCAGTGGAAGTTCTA+GGG | 0.582014 | 4.3:+50831051 | MS.gene95558:CDS |
| TGATAGACTCGTATGTACTT+CGG | 0.582019 | 4.3:-50830121 | None:intergenic |
| CACCATGGGCTTCTTCCCTG+TGG | 0.582342 | 4.3:+50826204 | MS.gene95558:CDS |
| TCCCTCTTTGCTACAAACCG+GGG | 0.583616 | 4.3:+50831295 | MS.gene95558:CDS |
| TCAATCTTGAATATCTTGGA+CGG | 0.584359 | 4.3:+50825519 | MS.gene95558:CDS |
| ACACAGATTCTTAGAAAGCA+TGG | 0.585648 | 4.3:+50825971 | MS.gene95558:CDS |
| ATTCTTGGATCATTCAGAGA+AGG | 0.587366 | 4.3:-50823689 | None:intergenic |
| AGCAACAACCAGAGGAGGTG+AGG | 0.588521 | 4.3:-50828542 | None:intergenic |
| AGAAGGAGCCAATTGGGACG+GGG | 0.589629 | 4.3:+50829904 | MS.gene95558:CDS |
| ACATGACCATGGATCCTCCT+GGG | 0.590725 | 4.3:+50830246 | MS.gene95558:CDS |
| ATTATCGCAGTTGCGAATGG+CGG | 0.591541 | 4.3:-50824524 | None:intergenic |
| GAATATGCCCTATCTTGTTG+CGG | 0.591911 | 4.3:-50826519 | None:intergenic |
| TTAACAAGTCTTCCTAAGCC+AGG | 0.593533 | 4.3:+50823635 | MS.gene95558:CDS |
| ATTCATCGAAGTAACTTGGT+AGG | 0.593748 | 4.3:+50831261 | MS.gene95558:CDS |
| TTCAAAGGCACACGGTCGTG+GGG | 0.597454 | 4.3:-50826711 | None:intergenic |
| AGTCTTCCTAAGCCAGGTGG+TGG | 0.597546 | 4.3:+50823641 | MS.gene95558:CDS |
| AAGGAACTCACCAATAACAT+TGG | 0.597601 | 4.3:-50831091 | None:intergenic |
| GTCATGTTCTTGAAGTATGG+AGG | 0.597918 | 4.3:-50830230 | None:intergenic |
| GCGAGTGAAAATCCTTTCAA+GGG | 0.600264 | 4.3:+50823608 | MS.gene95558:intron |
| AAGATAGTTAGCTCTTGTCA+AGG | 0.602141 | 4.3:-50828518 | None:intergenic |
| ACAACTATGATAGATGGGCT+TGG | 0.605199 | 4.3:+50825602 | MS.gene95558:CDS |
| TGTGCCTTTGAAAGAAATGA+AGG | 0.613775 | 4.3:+50826722 | MS.gene95558:CDS |
| AAACCCAAGTGTTATGCTTG+GGG | 0.616138 | 4.3:+50827813 | MS.gene95558:CDS |
| CCCTCTTTGCTACAAACCGG+GGG | 0.620242 | 4.3:+50831296 | MS.gene95558:CDS |
| AGAGCATAAGCAACAACCAG+AGG | 0.620802 | 4.3:-50828550 | None:intergenic |
| CTATCTGGAAATCTGCAGAA+TGG | 0.624123 | 4.3:+50825917 | MS.gene95558:CDS |
| CTAGGGATTGGGCTGCCAAG+GGG | 0.626412 | 4.3:+50831068 | MS.gene95558:CDS |
| AGATAGTTAGCTCTTGTCAA+GGG | 0.626760 | 4.3:-50828517 | None:intergenic |
| TCATTTCTTTCAAAGGCACA+CGG | 0.629426 | 4.3:-50826719 | None:intergenic |
| GCATAAGCAACAACCAGAGG+AGG | 0.630519 | 4.3:-50828547 | None:intergenic |
| CATATGGAAGAATTCCTCCA+TGG | 0.634790 | 4.3:-50831623 | None:intergenic |
| ACTTGAATTTCAGAGAAACA+AGG | 0.637555 | 4.3:+50825326 | MS.gene95558:CDS |
| GCAAGCCAAGTCAACAACGG+CGG | 0.638004 | 4.3:-50824760 | None:intergenic |
| TACATACGAGTCTATCACAA+AGG | 0.639157 | 4.3:+50830127 | MS.gene95558:CDS |
| TCCAGCTGGAGAAATATGAT+CGG | 0.639805 | 4.3:-50830324 | None:intergenic |
| TGGCCAGAATGTCTACCTCA+GGG | 0.641425 | 4.3:+50829932 | MS.gene95558:CDS |
| TGTTGGAGGTATCGAAGCTG+AGG | 0.643188 | 4.3:+50825640 | MS.gene95558:CDS |
| GATGATAGAGTCTTATCTCA+GGG | 0.643636 | 4.3:+50826365 | MS.gene95558:CDS |
| CATGTATCTCAGGACCAAAG+AGG | 0.644393 | 4.3:+50826577 | MS.gene95558:CDS |
| AGCTGGAGAAATATGATCGG+TGG | 0.644456 | 4.3:-50830321 | None:intergenic |
| GTCAAAGTCACAACTGACAG+TGG | 0.646617 | 4.3:+50831408 | MS.gene95558:CDS |
| TCTTTCACACCATGAGACCC+AGG | 0.647356 | 4.3:-50830263 | None:intergenic |
| ATCCACAGGGAAGAAGCCCA+TGG | 0.649532 | 4.3:-50826206 | None:intergenic |
| TCCAGCTGGAAGTATTAACA+AGG | 0.649598 | 4.3:+50830337 | MS.gene95558:CDS |
| CAGCCCCAAGCATAACACTT+GGG | 0.651191 | 4.3:-50827816 | None:intergenic |
| AAGTCGTCGGGGAAATGATG+AGG | 0.657790 | 4.3:+50830424 | MS.gene95558:CDS |
| TGATGTACTATACCAGAACC+AGG | 0.661607 | 4.3:-50825408 | None:intergenic |
| TGTTAACAAGCTCGTAAACG+GGG | 0.662403 | 4.3:+50830481 | MS.gene95558:CDS |
| AACATGTATTGGCAATTCAG+GGG | 0.662698 | 4.3:+50828242 | MS.gene95558:CDS |
| ATACTTCAAGAACATGACCA+TGG | 0.667430 | 4.3:+50830235 | MS.gene95558:CDS |
| CTCAGCACCAGCCAGCACAA+TGG | 0.669250 | 4.3:-50831029 | None:intergenic |
| CATAGCACGCTTTGATACCG+AGG | 0.669315 | 4.3:+50831446 | MS.gene95558:CDS |
| CTCTTGTCAAGGGATGAACC+CGG | 0.673673 | 4.3:-50828507 | None:intergenic |
| CATGCAAGCCAAGTCAACAA+CGG | 0.673843 | 4.3:-50824763 | None:intergenic |
| AATTCTTATGGAAGTCGTCG+GGG | 0.678191 | 4.3:+50830413 | MS.gene95558:CDS |
| TTACTAAATATCTACTCCAG+AGG | 0.681676 | 4.3:+50828045 | MS.gene95558:CDS |
| ATCTACCCAAGAAATTGCAG+AGG | 0.682888 | 4.3:+50829965 | MS.gene95558:CDS |
| TTATGTGTTCGATGCAGCAA+TGG | 0.685995 | 4.3:+50830547 | MS.gene95558:CDS |
| TAAATACCTACTAGAGCGTG+GGG | 0.714753 | 4.3:+50830373 | MS.gene95558:CDS |
| CTTGCATACTTCAACCATGG+AGG | 0.716794 | 4.3:+50831609 | MS.gene95558:CDS |
| CACAGGGAAGAAGCCCATGG+TGG | 0.716978 | 4.3:-50826203 | None:intergenic |
| CTTACTCTATCCTGACAGTG+TGG | 0.717434 | 4.3:+50825562 | MS.gene95558:CDS |
| TGAGATACATGGTTCTACGT+CGG | 0.727878 | 4.3:-50826565 | None:intergenic |
| GTAATGTAACGTGATCCACA+GGG | 0.728319 | 4.3:-50826219 | None:intergenic |
| ACAAGTCTTCCTAAGCCAGG+TGG | 0.730095 | 4.3:+50823638 | MS.gene95558:CDS |
| TTCACACCATGAGACCCAGG+AGG | 0.782097 | 4.3:-50830260 | None:intergenic |
| TGTACTATACCAGAACCAGG+AGG | 0.789089 | 4.3:-50825405 | None:intergenic |
| TAGATGGCCAGATATCCCTG+AGG | 0.809361 | 4.3:-50829947 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 50823460 | 50831671 | 50823460 | ID=MS.gene95558 |
| chr4.3 | mRNA | 50823460 | 50831671 | 50823460 | ID=MS.gene95558.t1;Parent=MS.gene95558 |
| chr4.3 | exon | 50823460 | 50823463 | 50823460 | ID=MS.gene95558.t1.exon1;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50823460 | 50823463 | 50823460 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50823609 | 50823713 | 50823609 | ID=MS.gene95558.t1.exon2;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50823609 | 50823713 | 50823609 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50824488 | 50824648 | 50824488 | ID=MS.gene95558.t1.exon3;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50824488 | 50824648 | 50824488 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50824744 | 50824836 | 50824744 | ID=MS.gene95558.t1.exon4;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50824744 | 50824836 | 50824744 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50825246 | 50825431 | 50825246 | ID=MS.gene95558.t1.exon5;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50825246 | 50825431 | 50825246 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50825518 | 50825679 | 50825518 | ID=MS.gene95558.t1.exon6;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50825518 | 50825679 | 50825518 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50825878 | 50826022 | 50825878 | ID=MS.gene95558.t1.exon7;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50825878 | 50826022 | 50825878 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50826134 | 50826276 | 50826134 | ID=MS.gene95558.t1.exon8;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50826134 | 50826276 | 50826134 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50826360 | 50826416 | 50826360 | ID=MS.gene95558.t1.exon9;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50826360 | 50826416 | 50826360 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50826519 | 50826598 | 50826519 | ID=MS.gene95558.t1.exon10;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50826519 | 50826598 | 50826519 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50826710 | 50826785 | 50826710 | ID=MS.gene95558.t1.exon11;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50826710 | 50826785 | 50826710 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50827691 | 50827876 | 50827691 | ID=MS.gene95558.t1.exon12;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50827691 | 50827876 | 50827691 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50827999 | 50828066 | 50827999 | ID=MS.gene95558.t1.exon13;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50827999 | 50828066 | 50827999 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50828185 | 50828303 | 50828185 | ID=MS.gene95558.t1.exon14;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50828185 | 50828303 | 50828185 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50828461 | 50828582 | 50828461 | ID=MS.gene95558.t1.exon15;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50828461 | 50828582 | 50828461 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50829888 | 50829986 | 50829888 | ID=MS.gene95558.t1.exon16;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50829888 | 50829986 | 50829888 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50830089 | 50830568 | 50830089 | ID=MS.gene95558.t1.exon17;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50830089 | 50830568 | 50830089 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50831004 | 50831102 | 50831004 | ID=MS.gene95558.t1.exon18;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50831004 | 50831102 | 50831004 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50831225 | 50831467 | 50831225 | ID=MS.gene95558.t1.exon19;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50831225 | 50831467 | 50831225 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| chr4.3 | exon | 50831603 | 50831671 | 50831603 | ID=MS.gene95558.t1.exon20;Parent=MS.gene95558.t1 |
| chr4.3 | CDS | 50831603 | 50831671 | 50831603 | ID=cds.MS.gene95558.t1;Parent=MS.gene95558.t1 |
| Gene Sequence |
| Protein sequence |
