Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95657.t1 | XP_024625759.1 | 96.3 | 931 | 30 | 3 | 1 | 931 | 1 | 927 | 0.00E+00 | 1767.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95657.t1 | O65020 | 68.5 | 952 | 268 | 7 | 9 | 939 | 1 | 941 | 0.0e+00 | 1277.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95657.t1 | G7KSD2 | 86.1 | 1036 | 35 | 5 | 1 | 931 | 1 | 1032 | 0.0e+00 | 1708.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene95657.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050105 | MS.gene95657 | 0.810175 | 1.31E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene95657 | 0.811121 | 8.20E-51 | -1.69E-46 |
| MS.gene050763 | MS.gene95657 | 0.808115 | 3.63E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene95657 | 0.816345 | 5.80E-52 | -1.69E-46 |
| MS.gene056480 | MS.gene95657 | 0.812789 | 3.55E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95657.t1 | MTR_4g014680 | 70.452 | 951 | 230 | 11 | 1 | 931 | 1 | 920 | 0.0 | 1318 |
| MS.gene95657.t1 | MTR_7g069700 | 94.222 | 675 | 33 | 4 | 1 | 673 | 1 | 671 | 0.0 | 1306 |
| MS.gene95657.t1 | MTR_7g069700 | 96.629 | 267 | 6 | 1 | 672 | 938 | 773 | 1036 | 3.71e-166 | 521 |
| MS.gene95657.t1 | MTR_7g069700 | 29.596 | 223 | 147 | 3 | 730 | 952 | 401 | 613 | 2.29e-20 | 98.2 |
| MS.gene95657.t1 | MTR_7g069700 | 30.435 | 184 | 128 | 0 | 417 | 600 | 847 | 1030 | 4.03e-19 | 94.4 |
| MS.gene95657.t1 | MTR_3g465430 | 59.322 | 944 | 350 | 11 | 9 | 942 | 1 | 920 | 0.0 | 1070 |
| MS.gene95657.t1 | MTR_1g071400 | 51.234 | 851 | 378 | 6 | 90 | 931 | 51 | 873 | 0.0 | 804 |
| MS.gene95657.t1 | MTR_1g071400 | 50.063 | 791 | 358 | 6 | 90 | 871 | 51 | 813 | 0.0 | 723 |
| MS.gene95657.t1 | MTR_1g071400 | 32.292 | 192 | 129 | 1 | 745 | 935 | 358 | 549 | 7.32e-21 | 99.8 |
| MS.gene95657.t1 | MTR_1g071400 | 46.734 | 689 | 330 | 6 | 90 | 769 | 51 | 711 | 0.0 | 574 |
| MS.gene95657.t1 | MTR_1g071400 | 32.292 | 192 | 129 | 1 | 745 | 935 | 358 | 549 | 2.66e-21 | 100 |
| MS.gene95657.t1 | MTR_7g069710 | 95.865 | 266 | 11 | 0 | 956 | 1221 | 1 | 266 | 1.34e-165 | 492 |
| MS.gene95657.t1 | MTR_4g014670 | 47.636 | 275 | 95 | 13 | 964 | 1210 | 3 | 256 | 3.04e-51 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95657.t1 | AT3G51770 | 69.199 | 961 | 262 | 8 | 1 | 939 | 1 | 949 | 0.0 | 1332 |
| MS.gene95657.t1 | AT3G51770 | 69.255 | 953 | 259 | 8 | 9 | 939 | 1 | 941 | 0.0 | 1319 |
| MS.gene95657.t1 | AT5G58550 | 53.659 | 943 | 376 | 9 | 9 | 931 | 1 | 902 | 0.0 | 976 |
| MS.gene95657.t1 | AT5G58550 | 27.004 | 237 | 169 | 3 | 714 | 947 | 356 | 591 | 1.10e-16 | 86.3 |
| MS.gene95657.t1 | AT4G02680 | 51.006 | 845 | 391 | 5 | 90 | 931 | 51 | 875 | 0.0 | 794 |
| MS.gene95657.t1 | AT3G51760 | 34.538 | 249 | 124 | 8 | 968 | 1195 | 16 | 246 | 2.81e-25 | 107 |
| MS.gene95657.t1 | AT3G51760 | 34.538 | 249 | 124 | 8 | 968 | 1195 | 16 | 246 | 2.81e-25 | 107 |
| MS.gene95657.t1 | AT3G51760 | 34.538 | 249 | 124 | 8 | 968 | 1195 | 16 | 246 | 2.81e-25 | 107 |
| MS.gene95657.t1 | AT3G51760 | 34.538 | 249 | 124 | 8 | 968 | 1195 | 7 | 237 | 5.99e-25 | 105 |
Find 261 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAAGGCTAGTTTGGTTTC+AGG | 0.109106 | 7.4:-34026574 | MS.gene95657:CDS |
| CATAAGCTGATGCATTATTT+TGG | 0.125426 | 7.4:+34022819 | None:intergenic |
| TTGTAGGCACTCAATAATTT+AGG | 0.154747 | 7.4:-34023007 | MS.gene95657:intron |
| AGCTTCCAGTGTGGCTGTTT+TGG | 0.165102 | 7.4:+34026927 | None:intergenic |
| CCATAGAACATCATATAATT+TGG | 0.168779 | 7.4:+34025344 | None:intergenic |
| TCTGAAATCAATAAAATAAT+TGG | 0.192762 | 7.4:-34025473 | MS.gene95657:CDS |
| CCAAATTATATGATGTTCTA+TGG | 0.202581 | 7.4:-34025344 | MS.gene95657:CDS |
| AGATGTAACAGTTGCAATTC+TGG | 0.227845 | 7.4:+34018399 | None:intergenic |
| GATATTTACAAATATATTAT+TGG | 0.227898 | 7.4:-34017827 | MS.gene95657:CDS |
| CGTTGATGATATTGGTTCTT+TGG | 0.244913 | 7.4:-34025222 | MS.gene95657:CDS |
| GTTATTGAAGCTCTCTAATA+TGG | 0.254599 | 7.4:-34017248 | MS.gene95657:CDS |
| GCTTGGGACTTCTCTTCTCT+TGG | 0.256096 | 7.4:-34016583 | MS.gene95657:CDS |
| GGCTGCTTTGGTGTTGGATA+TGG | 0.256437 | 7.4:-34026137 | MS.gene95657:CDS |
| TCTCTTTGTATCAGTGTTAA+TGG | 0.257847 | 7.4:-34018478 | MS.gene95657:intron |
| TTCTTGGAGGAGAATAAAAT+TGG | 0.266980 | 7.4:-34025506 | MS.gene95657:CDS |
| AAAACAGCCCGGTGTTTATA+TGG | 0.268161 | 7.4:+34025530 | None:intergenic |
| AATACAAAGATGCACAAAAT+TGG | 0.273846 | 7.4:-34025778 | MS.gene95657:CDS |
| TTAAAGCTTGAAGAATTTAA+TGG | 0.273898 | 7.4:-34016767 | MS.gene95657:CDS |
| GCTAGTGGCAGCTTGCTTGC+AGG | 0.285640 | 7.4:-34026065 | MS.gene95657:CDS |
| CCCTTGCCGGCGTGCGTCGC+CGG | 0.286266 | 7.4:-34026822 | MS.gene95657:CDS |
| ACCTGTTGGTTGGATGTATC+AGG | 0.286915 | 7.4:-34025633 | MS.gene95657:CDS |
| CAAACATCACAACACCTAAT+TGG | 0.292783 | 7.4:+34025810 | None:intergenic |
| CCATACAACATTGTCATAAA+AGG | 0.296170 | 7.4:+34026355 | None:intergenic |
| CAACTTGCTTATCACCAATT+AGG | 0.297340 | 7.4:-34025824 | MS.gene95657:CDS |
| TGATGCTCATTTGGCTGCTT+TGG | 0.298085 | 7.4:-34026149 | MS.gene95657:CDS |
| CGGAGAATCGGCGGCGGCGG+CGG | 0.298093 | 7.4:+34027050 | None:intergenic |
| CTTGGGACTTCTCTTCTCTT+GGG | 0.298615 | 7.4:-34016582 | MS.gene95657:CDS |
| AATCACGGGGTTTGTCTTAG+AGG | 0.304158 | 7.4:-34016647 | MS.gene95657:CDS |
| TGTGTGACCACGCTTATATT+TGG | 0.311310 | 7.4:+34025700 | None:intergenic |
| TGGTTCCACTTCTGAGCAAC+AGG | 0.313807 | 7.4:+34025284 | None:intergenic |
| CATCTCATCATATGCCGCTT+TGG | 0.316982 | 7.4:+34022862 | None:intergenic |
| ATCTCATCATATGCCGCTTT+GGG | 0.317455 | 7.4:+34022863 | None:intergenic |
| TCAACCCTCTCCGAGTCTTT+TGG | 0.317936 | 7.4:+34017055 | None:intergenic |
| TTTGGTTCGACCGGAAGTTT+TGG | 0.318678 | 7.4:+34026960 | None:intergenic |
| GGACATATCCGTACAGATAT+AGG | 0.319554 | 7.4:-34022721 | MS.gene95657:CDS |
| GGGGATTGTTCCCATGAAAA+TGG | 0.320085 | 7.4:+34017085 | None:intergenic |
| AGTCCCAAGCCACATCCTTT+TGG | 0.320568 | 7.4:+34016596 | None:intergenic |
| GCGTTGTTGTTGATTGAGTA+TGG | 0.321993 | 7.4:-34026109 | MS.gene95657:CDS |
| GTATAGGTGATAGTGAAATT+AGG | 0.322217 | 7.4:-34026411 | MS.gene95657:CDS |
| ATCGGCTTGTGATGCTCATT+TGG | 0.324494 | 7.4:-34026158 | MS.gene95657:CDS |
| CAATTCTGGCTTAAAGTTGA+TGG | 0.331764 | 7.4:+34018413 | None:intergenic |
| CAGGTTTAAGATCAGAAATA+AGG | 0.339519 | 7.4:+34025651 | None:intergenic |
| ACCAAGAGGTTGAGTCAGTT+TGG | 0.340955 | 7.4:-34026241 | MS.gene95657:CDS |
| TCAGGGTGTGATCATGAATC+TGG | 0.342594 | 7.4:-34026556 | MS.gene95657:CDS |
| CATGATCAATCGCTTTCTTC+CGG | 0.346815 | 7.4:-34016726 | MS.gene95657:CDS |
| AAAGAGTGTGATTGATCTCT+TGG | 0.347427 | 7.4:-34023180 | MS.gene95657:CDS |
| GATTTGGTTCAAACCCTTGC+CGG | 0.349062 | 7.4:-34026835 | MS.gene95657:CDS |
| CTAAGGCTAGTTTGGTTTCA+GGG | 0.356896 | 7.4:-34026573 | MS.gene95657:CDS |
| TGAATGTCCTAAGGCTAGTT+TGG | 0.358860 | 7.4:-34026581 | MS.gene95657:CDS |
| AAACTAAGATCGTTCTTTGC+CGG | 0.370718 | 7.4:+34022767 | None:intergenic |
| TTTGTAGAGCATGGAAGAAC+AGG | 0.377373 | 7.4:+34016527 | None:intergenic |
| GACATATCCGTACAGATATA+GGG | 0.383582 | 7.4:-34022720 | MS.gene95657:CDS |
| AAGCAATTGCAGAGCTTTCA+AGG | 0.386541 | 7.4:-34018437 | MS.gene95657:CDS |
| GGCAAAGAACGATCTTAGTT+TGG | 0.391087 | 7.4:-34022765 | MS.gene95657:CDS |
| TGGTCTTCCGTTGATGATAT+TGG | 0.396259 | 7.4:-34025230 | MS.gene95657:CDS |
| TTGTTTGAAGCCGTTTGATT+TGG | 0.402048 | 7.4:-34026851 | MS.gene95657:CDS |
| TGTAGGCACTCAATAATTTA+GGG | 0.405280 | 7.4:-34023006 | MS.gene95657:intron |
| CCAAGAGGTTGAGTCAGTTT+GGG | 0.407653 | 7.4:-34026240 | MS.gene95657:CDS |
| TCTCCAAAAGGATGTGGCTT+GGG | 0.408150 | 7.4:-34016599 | MS.gene95657:CDS |
| GGCTCCTTCATAATCCTTCA+TGG | 0.410046 | 7.4:+34025400 | None:intergenic |
| CAAGCATACACGAGCACATC+AGG | 0.413519 | 7.4:-34022918 | MS.gene95657:CDS |
| CTGTACGGATATGTCCTTAG+AGG | 0.414002 | 7.4:+34022728 | None:intergenic |
| GGCAATCTTTACTTCTGTTA+CGG | 0.416098 | 7.4:-34025145 | MS.gene95657:intron |
| TTTCTGATAGTAAATTGTTC+CGG | 0.416330 | 7.4:-34026738 | MS.gene95657:CDS |
| AGCCATGCGTAGTCTGCGTT+TGG | 0.420086 | 7.4:-34023387 | MS.gene95657:CDS |
| TCCTGATACATCCAACCAAC+AGG | 0.422721 | 7.4:+34025632 | None:intergenic |
| ATTTCTGATCTTAAACCTGT+TGG | 0.424740 | 7.4:-34025647 | MS.gene95657:CDS |
| CAACACAGTTGGATCCTCTA+AGG | 0.425094 | 7.4:-34022742 | MS.gene95657:CDS |
| TATATGGAAAAGAAAGAGTT+GGG | 0.429439 | 7.4:+34025546 | None:intergenic |
| TTGGTTCTTGATTGCCATGA+AGG | 0.431469 | 7.4:-34025414 | MS.gene95657:CDS |
| TCCTTGTGGCCTTCCTTCGT+CGG | 0.433566 | 7.4:-34026899 | MS.gene95657:CDS |
| TTGGTTTGAGGCTGCTGTTA+AGG | 0.434781 | 7.4:-34025759 | MS.gene95657:CDS |
| AACTTCCGGTCGAACCAAAC+CGG | 0.436498 | 7.4:-34026956 | MS.gene95657:CDS |
| GTTAGTGTTGATAATGTTGA+TGG | 0.438872 | 7.4:-34026496 | MS.gene95657:CDS |
| CAAGACTTCCTCCATGCCTC+TGG | 0.440527 | 7.4:-34017003 | MS.gene95657:CDS |
| CTAGACCGCTCCAAAACTTC+CGG | 0.441185 | 7.4:-34026970 | MS.gene95657:CDS |
| TGAAGATTGTGTTGGCTGCT+TGG | 0.442390 | 7.4:-34026672 | MS.gene95657:CDS |
| TCATGTGCTTCTTCTCCAAA+AGG | 0.444985 | 7.4:-34016611 | MS.gene95657:CDS |
| AACTAAGATCGTTCTTTGCC+GGG | 0.446592 | 7.4:+34022768 | None:intergenic |
| AGTGTTAATGGACGATCATA+AGG | 0.446891 | 7.4:-34018466 | MS.gene95657:CDS |
| TTGGGAATGATCTTGTGCTT+GGG | 0.447922 | 7.4:-34026222 | MS.gene95657:CDS |
| AGAACCAAGCTCTCAATTCA+AGG | 0.447935 | 7.4:+34025429 | None:intergenic |
| AAGGAGCCCTTAGGGATGTC+AGG | 0.448282 | 7.4:-34025385 | MS.gene95657:CDS |
| TTTGGGAATGATCTTGTGCT+TGG | 0.451623 | 7.4:-34026223 | MS.gene95657:CDS |
| GCTCATAGTGACAGCAATGA+TGG | 0.451821 | 7.4:-34016797 | MS.gene95657:CDS |
| TGTAGAGGGTAGAGATAGAC+TGG | 0.452553 | 7.4:-34025981 | MS.gene95657:CDS |
| AATGTCCTTCAGATGGTCTT+CGG | 0.455974 | 7.4:-34023145 | MS.gene95657:CDS |
| AGGATTATGAAGGAGCCCTT+AGG | 0.458477 | 7.4:-34025394 | MS.gene95657:CDS |
| TTCTCCAAAAGGATGTGGCT+TGG | 0.458897 | 7.4:-34016600 | MS.gene95657:CDS |
| TCCGGCGACGCACGCCGGCA+AGG | 0.459248 | 7.4:+34026821 | None:intergenic |
| CGCCGGATCGAGGGTGAGGG+TGG | 0.464077 | 7.4:-34026805 | MS.gene95657:CDS |
| GCTTGTTGGTTCTTCTGCAA+TGG | 0.465046 | 7.4:-34026623 | MS.gene95657:CDS |
| GCGTCGCCGGATCGAGGGTG+AGG | 0.467299 | 7.4:-34026809 | MS.gene95657:CDS |
| ACTGCCTTGAATTGAGAGCT+TGG | 0.469920 | 7.4:-34025433 | MS.gene95657:CDS |
| AATTGTTCCGGCGGAGTCTC+CGG | 0.469922 | 7.4:-34026726 | MS.gene95657:CDS |
| TTCGCCCTGTTGCTCAGAAG+TGG | 0.471523 | 7.4:-34025289 | MS.gene95657:CDS |
| CCGCCGATGACGGCGTTGAT+CGG | 0.472391 | 7.4:+34027030 | None:intergenic |
| AAAGGGCCGCTTCACAGTCT+TGG | 0.472906 | 7.4:+34018331 | None:intergenic |
| CAGAGGCATGGAGGAAGTCT+TGG | 0.475152 | 7.4:+34017004 | None:intergenic |
| TCCCACCCTCACCCTCGATC+CGG | 0.475722 | 7.4:+34026803 | None:intergenic |
| TTCTGTGCATTTGTAGAGCA+TGG | 0.475934 | 7.4:+34016518 | None:intergenic |
| ATTCTTCAGTGGGCGTTGCA+AGG | 0.475946 | 7.4:-34025724 | MS.gene95657:CDS |
| GATCGGAGAATCGGCGGCGG+CGG | 0.476394 | 7.4:+34027047 | None:intergenic |
| CCGGCGACGCACGCCGGCAA+GGG | 0.479079 | 7.4:+34026822 | None:intergenic |
| TCATTTGGCTGCTTTGGTGT+TGG | 0.479480 | 7.4:-34026143 | MS.gene95657:CDS |
| AGGTTTAAGATCAGAAATAA+GGG | 0.480132 | 7.4:+34025652 | None:intergenic |
| AAAGGTCTTTGTATTGCATC+GGG | 0.480166 | 7.4:-34025610 | MS.gene95657:CDS |
| TCTCCGATCAACGCCGTCAT+CGG | 0.480841 | 7.4:-34027033 | MS.gene95657:CDS |
| TTGTGTTGGCTGCTTGGTTG+AGG | 0.481404 | 7.4:-34026666 | MS.gene95657:CDS |
| GTTGTTGATTGAGTATGGAT+TGG | 0.481475 | 7.4:-34026104 | MS.gene95657:CDS |
| AGACGCTTTGTTGACAAAAG+AGG | 0.482548 | 7.4:+34017169 | None:intergenic |
| GCTCTCAATTCAAGGCAGTC+AGG | 0.482894 | 7.4:+34025437 | None:intergenic |
| GGATTATGAAGGAGCCCTTA+GGG | 0.483017 | 7.4:-34025393 | MS.gene95657:CDS |
| TTGGGACTTCTCTTCTCTTG+GGG | 0.483194 | 7.4:-34016581 | MS.gene95657:CDS |
| CGGCGTGCGTCGCCGGATCG+AGG | 0.483201 | 7.4:-34026815 | MS.gene95657:CDS |
| AGATGGTCTTCGGAAGGGAC+AGG | 0.483338 | 7.4:-34023135 | MS.gene95657:intron |
| AGAAGAGAAGATGAGCTTGT+TGG | 0.485086 | 7.4:-34026637 | MS.gene95657:CDS |
| TTAGGAGAATGTGCGGAGAA+TGG | 0.489835 | 7.4:-34025857 | MS.gene95657:CDS |
| GAATATGAAAGGCGATCGTT+TGG | 0.490613 | 7.4:-34025321 | MS.gene95657:CDS |
| ATCAACGCCGTCATCGGCGG+CGG | 0.491426 | 7.4:-34027027 | MS.gene95657:CDS |
| GATGACAAAGCTGATAGAAA+AGG | 0.492033 | 7.4:-34022843 | MS.gene95657:CDS |
| CAGCATGCTGTCGCGCCGAC+CGG | 0.492848 | 7.4:+34026707 | None:intergenic |
| ATGGTGGATTTGTTGAGTCT+AGG | 0.494400 | 7.4:-34026336 | MS.gene95657:CDS |
| TTCTTCAGTGGGCGTTGCAA+GGG | 0.497679 | 7.4:-34025723 | MS.gene95657:CDS |
| AACGATTTCGACAAGAATCA+CGG | 0.498341 | 7.4:-34016662 | MS.gene95657:CDS |
| TGAGGTGATGAGGGCGGTTG+AGG | 0.499232 | 7.4:-34026275 | MS.gene95657:CDS |
| TCTTAGTTTGGCAACACAGT+TGG | 0.499800 | 7.4:-34022753 | MS.gene95657:CDS |
| AGAATATTGCGATCGTGACC+CGG | 0.500395 | 7.4:-34022786 | MS.gene95657:CDS |
| GACGGCGTTGATCGGAGAAT+CGG | 0.500768 | 7.4:+34027038 | None:intergenic |
| CCCAAACTGACTCAACCTCT+TGG | 0.501232 | 7.4:+34026240 | None:intergenic |
| GGCGTGCGTCGCCGGATCGA+GGG | 0.505772 | 7.4:-34026814 | MS.gene95657:CDS |
| GTTGATTGAGTATGGATTGG+AGG | 0.506035 | 7.4:-34026101 | MS.gene95657:CDS |
| CCTGAAACCAAACTAGCCTT+AGG | 0.506291 | 7.4:+34026574 | None:intergenic |
| TCCAACCGGTTTGGTTCGAC+CGG | 0.508994 | 7.4:+34026951 | None:intergenic |
| CCGTACAGATATAGGGCAGC+AGG | 0.510354 | 7.4:-34022713 | MS.gene95657:intron |
| GAAAGGTCTTTGTATTGCAT+CGG | 0.511296 | 7.4:-34025611 | MS.gene95657:CDS |
| TGTTGCTCAGAAGTGGAACC+AGG | 0.514083 | 7.4:-34025282 | MS.gene95657:CDS |
| TCTTCCGGATGCTAATGCAT+TGG | 0.514286 | 7.4:-34016711 | MS.gene95657:CDS |
| AAGCGATTGATCATGTAAGT+TGG | 0.514575 | 7.4:+34016734 | None:intergenic |
| AGGGTTTGAACCAAATCAAA+CGG | 0.514627 | 7.4:+34026841 | None:intergenic |
| GGAATCGCCGCCGCCGATGA+CGG | 0.515016 | 7.4:+34027020 | None:intergenic |
| CTCAAACGTTGCATCGAGCT+AGG | 0.516884 | 7.4:+34026025 | None:intergenic |
| TTGTTGTACGGAGATGAAAT+CGG | 0.517052 | 7.4:-34026176 | MS.gene95657:CDS |
| CTCGATCCGGCGACGCACGC+CGG | 0.518205 | 7.4:+34026816 | None:intergenic |
| TGGAGCGGTCTAGTAAATGA+TGG | 0.518963 | 7.4:+34026980 | None:intergenic |
| GTGATGCTCTTAGAGAGGTT+AGG | 0.519954 | 7.4:-34025875 | MS.gene95657:CDS |
| GGACATATTTATTCTTCAGT+GGG | 0.519968 | 7.4:-34025734 | MS.gene95657:CDS |
| AGATGCACAAAATTGGTTTG+AGG | 0.521303 | 7.4:-34025771 | MS.gene95657:CDS |
| ATGGAGGAAGTCTTGGCCGA+GGG | 0.521326 | 7.4:+34017011 | None:intergenic |
| GTTGAATCACAGGAGGGAAA+AGG | 0.523398 | 7.4:-34018082 | MS.gene95657:intron |
| GAGAATGTGCGGAGAATGGT+TGG | 0.526314 | 7.4:-34025853 | MS.gene95657:CDS |
| CATGAAAGACTTGTCTATGA+AGG | 0.526341 | 7.4:-34023341 | MS.gene95657:CDS |
| CAAATTATATGATGTTCTAT+GGG | 0.529449 | 7.4:-34025343 | MS.gene95657:CDS |
| TTTATTGGACGCCAGAGGCA+TGG | 0.529850 | 7.4:+34016992 | None:intergenic |
| CTGATCTTAAACCTGTTGGT+TGG | 0.530968 | 7.4:-34025643 | MS.gene95657:CDS |
| CTAGAAGCTCCGACGAAGGA+AGG | 0.534045 | 7.4:+34026890 | None:intergenic |
| CTGGAAGCTCTTCTTCCTTG+TGG | 0.535909 | 7.4:-34026913 | MS.gene95657:CDS |
| GCTTCTTCTCCAAAAGGATG+TGG | 0.537312 | 7.4:-34016605 | MS.gene95657:CDS |
| GTGATTCTTGTCGAAATCGT+TGG | 0.538181 | 7.4:+34016664 | None:intergenic |
| AATGGATTGTTGTGGAAGAA+AGG | 0.538901 | 7.4:-34026605 | MS.gene95657:CDS |
| CCCGGGCAAGCCAAAAGACT+CGG | 0.540457 | 7.4:-34017065 | MS.gene95657:CDS |
| AGTGGAACCAGGCTGATTGT+TGG | 0.540888 | 7.4:-34025271 | MS.gene95657:CDS |
| GAGATAGACTGGCTTGTGTA+GGG | 0.542301 | 7.4:-34025970 | MS.gene95657:CDS |
| AGGACATATTTATTCTTCAG+TGG | 0.544155 | 7.4:-34025735 | MS.gene95657:CDS |
| AAATTGCCCTGACATCCCTA+AGG | 0.545348 | 7.4:+34025378 | None:intergenic |
| TTATATGGAAAAGAAAGAGT+TGG | 0.545500 | 7.4:+34025545 | None:intergenic |
| CCGATCAACGCCGTCATCGG+CGG | 0.546042 | 7.4:-34027030 | MS.gene95657:CDS |
| AGTGAATTTGACAAGCAAGA+TGG | 0.546705 | 7.4:+34017124 | None:intergenic |
| CGTCGCCGGATCGAGGGTGA+GGG | 0.548713 | 7.4:-34026808 | MS.gene95657:CDS |
| ATTGCCATGAAGGATTATGA+AGG | 0.549623 | 7.4:-34025404 | MS.gene95657:CDS |
| AGAGATAGACTGGCTTGTGT+AGG | 0.551278 | 7.4:-34025971 | MS.gene95657:CDS |
| TCCTTCAGATGGTCTTCGGA+AGG | 0.551380 | 7.4:-34023141 | MS.gene95657:CDS |
| ATGTTCTATGGGAATATGAA+AGG | 0.551432 | 7.4:-34025332 | MS.gene95657:CDS |
| GCAGCCAATGCATTAGCATC+CGG | 0.553590 | 7.4:+34016707 | None:intergenic |
| CTCAACTTCTTATGAAGATG+AGG | 0.555987 | 7.4:-34026461 | MS.gene95657:CDS |
| TTTGAGTCAGGTTGCGATGG+AGG | 0.560395 | 7.4:-34025921 | MS.gene95657:CDS |
| AGGAGTCGATTTCTATTCAA+AGG | 0.560635 | 7.4:-34023268 | MS.gene95657:CDS |
| AAATCAAACGGCTTCAAACA+AGG | 0.560982 | 7.4:+34026853 | None:intergenic |
| CATGGAGGAAGTCTTGGCCG+AGG | 0.562418 | 7.4:+34017010 | None:intergenic |
| TTTGAGGCTGCTGTTAAGGA+AGG | 0.562936 | 7.4:-34025755 | MS.gene95657:CDS |
| TCGTGCTTCGGATCGAGGTG+AGG | 0.563792 | 7.4:+34027121 | None:intergenic |
| GAGTGTGATTGATCTCTTGG+AGG | 0.564967 | 7.4:-34023177 | MS.gene95657:CDS |
| TCTAACACCTCAGCATGGCT+AGG | 0.565229 | 7.4:+34018300 | None:intergenic |
| ATGGCTAGGATCAAGACAAA+GGG | 0.566751 | 7.4:+34018314 | None:intergenic |
| TTGCAGGTTAAATTCTCAGA+AGG | 0.567174 | 7.4:-34023411 | MS.gene95657:intron |
| ACGATTTCGACAAGAATCAC+GGG | 0.567217 | 7.4:-34016661 | MS.gene95657:CDS |
| AGAAGCTATAGCAAAGGCTG+AGG | 0.568097 | 7.4:-34023288 | MS.gene95657:CDS |
| TGGATTTGTTGAGTCTAGGA+GGG | 0.568303 | 7.4:-34026332 | MS.gene95657:CDS |
| GGTTCTAGAAGCTCCGACGA+AGG | 0.568479 | 7.4:+34026886 | None:intergenic |
| TCCGGTCGAACCAAACCGGT+TGG | 0.569565 | 7.4:-34026952 | MS.gene95657:CDS |
| TGTGCATTTGAAGATTGTGT+TGG | 0.569827 | 7.4:-34026680 | MS.gene95657:CDS |
| AAAGACTTGTCTATGAAGGA+TGG | 0.571019 | 7.4:-34023337 | MS.gene95657:CDS |
| TTCAAACAAGGCTCAATCGA+AGG | 0.571307 | 7.4:+34026865 | None:intergenic |
| GTGGATTTGTTGAGTCTAGG+AGG | 0.573651 | 7.4:-34026333 | MS.gene95657:CDS |
| TGAGTATGGATTGGAGGAGA+TGG | 0.573672 | 7.4:-34026095 | MS.gene95657:CDS |
| CCTGCTGCCCTATATCTGTA+CGG | 0.576277 | 7.4:+34022713 | None:intergenic |
| CTCATAGTGACAGCAATGAT+GGG | 0.576855 | 7.4:-34016796 | MS.gene95657:CDS |
| GTCTTTGTATTGCATCGGGA+AGG | 0.580398 | 7.4:-34025606 | MS.gene95657:CDS |
| AGCCAAACGCAGACTACGCA+TGG | 0.580853 | 7.4:+34023385 | None:intergenic |
| TTAGTGTTGATAATGTTGAT+GGG | 0.581210 | 7.4:-34026495 | MS.gene95657:CDS |
| TCTTCTGCAATGGATTGTTG+TGG | 0.581613 | 7.4:-34026613 | MS.gene95657:CDS |
| GTGACAGCAATGATGGGTTG+AGG | 0.581776 | 7.4:-34016790 | MS.gene95657:CDS |
| TTTATGACAATGTTGTATGG+TGG | 0.584334 | 7.4:-34026352 | MS.gene95657:CDS |
| TGGACCCAAAACAGCCACAC+TGG | 0.586338 | 7.4:-34026932 | MS.gene95657:CDS |
| AAGAAAGGTTGAATGTCCTA+AGG | 0.586454 | 7.4:-34026590 | MS.gene95657:CDS |
| GCTCTTAAATGTCCTTCAGA+TGG | 0.589269 | 7.4:-34023152 | MS.gene95657:CDS |
| GCGCCGACCGGAGACTCCGC+CGG | 0.592315 | 7.4:+34026719 | None:intergenic |
| GGCGTTGATCGGAGAATCGG+CGG | 0.592552 | 7.4:+34027041 | None:intergenic |
| TCAAACGTTGCATCGAGCTA+GGG | 0.597450 | 7.4:+34026026 | None:intergenic |
| ATTGCATCCAACAATCAGCC+TGG | 0.597846 | 7.4:+34025264 | None:intergenic |
| ACTTCTTATGAAGATGAGGA+TGG | 0.600132 | 7.4:-34026457 | MS.gene95657:CDS |
| AGAGAGGTTAGGAGAATGTG+CGG | 0.602272 | 7.4:-34025864 | MS.gene95657:CDS |
| CAGATGTTAGAAAATAACCC+GGG | 0.605466 | 7.4:-34025188 | MS.gene95657:CDS |
| CCAGATGTTAGAAAATAACC+CGG | 0.605861 | 7.4:-34025189 | MS.gene95657:CDS |
| GCCGGATCGAGGGTGAGGGT+GGG | 0.606510 | 7.4:-34026804 | MS.gene95657:CDS |
| AGCAATTGCAGAGCTTTCAA+GGG | 0.606547 | 7.4:-34018436 | MS.gene95657:CDS |
| TACACGAGCACATCAGGGGT+TGG | 0.606733 | 7.4:-34022912 | MS.gene95657:CDS |
| TTGGTTGGATGTATCAGGAA+AGG | 0.609801 | 7.4:-34025628 | MS.gene95657:CDS |
| CGAAGCACGAAAATCACTGA+TGG | 0.613242 | 7.4:-34027108 | MS.gene95657:CDS |
| TCTTGATCCTAGCCATGCTG+AGG | 0.613827 | 7.4:-34018307 | MS.gene95657:intron |
| CATGGCTAGGATCAAGACAA+AGG | 0.613870 | 7.4:+34018313 | None:intergenic |
| TACTGTCCAAGACTGTGAAG+CGG | 0.615288 | 7.4:-34018337 | MS.gene95657:CDS |
| TGGAGGAAGTCTTGGCCGAG+GGG | 0.617094 | 7.4:+34017012 | None:intergenic |
| CAAAGAACCAATATCATCAA+CGG | 0.617972 | 7.4:+34025223 | None:intergenic |
| AGGAGCCCTTAGGGATGTCA+GGG | 0.619291 | 7.4:-34025384 | MS.gene95657:CDS |
| GTTCCGGCGGAGTCTCCGGT+CGG | 0.620759 | 7.4:-34026722 | MS.gene95657:CDS |
| GATAAAGACGATGGTTGTGA+TGG | 0.625217 | 7.4:-34016926 | MS.gene95657:CDS |
| TCCGACGAAGGAAGGCCACA+AGG | 0.625348 | 7.4:+34026898 | None:intergenic |
| ACACGGGTCAGCTAATGCAT+AGG | 0.626512 | 7.4:+34023220 | None:intergenic |
| AAGCATACACGAGCACATCA+GGG | 0.626921 | 7.4:-34022917 | MS.gene95657:CDS |
| CCCTTCCGAAGACCATCTGA+AGG | 0.627028 | 7.4:+34023140 | None:intergenic |
| CTGATAGTAAATTGTTCCGG+CGG | 0.627378 | 7.4:-34026735 | MS.gene95657:CDS |
| CCTTCAGATGGTCTTCGGAA+GGG | 0.628021 | 7.4:-34023140 | MS.gene95657:CDS |
| TTGTAGAGCATGGAAGAACA+GGG | 0.630535 | 7.4:+34016528 | None:intergenic |
| AATTGCCCTGACATCCCTAA+GGG | 0.632546 | 7.4:+34025379 | None:intergenic |
| GCTTGTAGCAGTCAGCAGCA+AGG | 0.642893 | 7.4:+34022954 | None:intergenic |
| AAATTTCTAACACCTCAGCA+TGG | 0.643658 | 7.4:+34018295 | None:intergenic |
| TAGTGTTGATAATGTTGATG+GGG | 0.647542 | 7.4:-34026494 | MS.gene95657:CDS |
| GGAGATGGCGTATTTGCTAG+TGG | 0.649477 | 7.4:-34026080 | MS.gene95657:CDS |
| TCGATGATGTAGAAACCCCT+CGG | 0.651455 | 7.4:-34017027 | MS.gene95657:CDS |
| CGACAGTGATGCTCTTAGAG+AGG | 0.651602 | 7.4:-34025880 | MS.gene95657:CDS |
| TCGTGAAGAAGCTATAGCAA+AGG | 0.655670 | 7.4:-34023294 | MS.gene95657:CDS |
| GGTTCCACTTCTGAGCAACA+GGG | 0.656342 | 7.4:+34025285 | None:intergenic |
| GAAGACTCTGAATCAAGACA+CGG | 0.658151 | 7.4:+34023203 | None:intergenic |
| CAAGCCAAAAGACTCGGAGA+GGG | 0.658942 | 7.4:-34017059 | MS.gene95657:CDS |
| GTTGATCGGAGAATCGGCGG+CGG | 0.659465 | 7.4:+34027044 | None:intergenic |
| TGATTGTTGGATGATGTCAA+AGG | 0.659868 | 7.4:+34016829 | None:intergenic |
| ATTGCATTTGATAAAGACGA+TGG | 0.661695 | 7.4:-34016935 | MS.gene95657:CDS |
| GCAAGCCAAAAGACTCGGAG+AGG | 0.662025 | 7.4:-34017060 | MS.gene95657:CDS |
| GGATGCAATTGTATGACAGA+TGG | 0.665267 | 7.4:-34025250 | MS.gene95657:CDS |
| GCAACTGTTACATCTTCGAG+CGG | 0.665843 | 7.4:-34018391 | MS.gene95657:CDS |
| CGATTTCGACAAGAATCACG+GGG | 0.670605 | 7.4:-34016660 | MS.gene95657:CDS |
| GGATGGATATTGTATGACAC+TGG | 0.671850 | 7.4:-34023320 | MS.gene95657:CDS |
| TTCTGTTGAGGTGATGAGGG+CGG | 0.682803 | 7.4:-34026281 | MS.gene95657:CDS |
| GCAAGGGCCAAATATAAGCG+TGG | 0.692048 | 7.4:-34025707 | MS.gene95657:CDS |
| AAGACTCTGAATCAAGACAC+GGG | 0.694198 | 7.4:+34023204 | None:intergenic |
| ATTGGACGCCAGAGGCATGG+AGG | 0.698776 | 7.4:+34016995 | None:intergenic |
| TCTTCAACGTCAGCCCAAAG+CGG | 0.707078 | 7.4:-34022876 | MS.gene95657:CDS |
| AGCATACACGAGCACATCAG+GGG | 0.713965 | 7.4:-34022916 | MS.gene95657:CDS |
| AGGAAGAAGAGCTTCCAGTG+TGG | 0.736071 | 7.4:+34026918 | None:intergenic |
| AGATGTTAGAAAATAACCCG+GGG | 0.738492 | 7.4:-34025187 | MS.gene95657:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 34016451 | 34027157 | 34016451 | ID=MS.gene95657 |
| chr7.4 | mRNA | 34016451 | 34027157 | 34016451 | ID=MS.gene95657.t1;Parent=MS.gene95657 |
| chr7.4 | exon | 34025146 | 34027157 | 34025146 | ID=MS.gene95657.t1.exon1;Parent=MS.gene95657.t1 |
| chr7.4 | CDS | 34025146 | 34027157 | 34025146 | ID=cds.MS.gene95657.t1;Parent=MS.gene95657.t1 |
| chr7.4 | exon | 34023136 | 34023427 | 34023136 | ID=MS.gene95657.t1.exon2;Parent=MS.gene95657.t1 |
| chr7.4 | CDS | 34023136 | 34023427 | 34023136 | ID=cds.MS.gene95657.t1;Parent=MS.gene95657.t1 |
| chr7.4 | exon | 34022714 | 34023023 | 34022714 | ID=MS.gene95657.t1.exon3;Parent=MS.gene95657.t1 |
| chr7.4 | CDS | 34022714 | 34023023 | 34022714 | ID=cds.MS.gene95657.t1;Parent=MS.gene95657.t1 |
| chr7.4 | exon | 34018308 | 34018486 | 34018308 | ID=MS.gene95657.t1.exon4;Parent=MS.gene95657.t1 |
| chr7.4 | CDS | 34018308 | 34018486 | 34018308 | ID=cds.MS.gene95657.t1;Parent=MS.gene95657.t1 |
| chr7.4 | exon | 34018083 | 34018092 | 34018083 | ID=MS.gene95657.t1.exon5;Parent=MS.gene95657.t1 |
| chr7.4 | CDS | 34018083 | 34018092 | 34018083 | ID=cds.MS.gene95657.t1;Parent=MS.gene95657.t1 |
| chr7.4 | exon | 34017811 | 34017854 | 34017811 | ID=MS.gene95657.t1.exon6;Parent=MS.gene95657.t1 |
| chr7.4 | CDS | 34017811 | 34017854 | 34017811 | ID=cds.MS.gene95657.t1;Parent=MS.gene95657.t1 |
| chr7.4 | exon | 34016451 | 34017269 | 34016451 | ID=MS.gene95657.t1.exon7;Parent=MS.gene95657.t1 |
| chr7.4 | CDS | 34016451 | 34017269 | 34016451 | ID=cds.MS.gene95657.t1;Parent=MS.gene95657.t1 |
| Gene Sequence |
| Protein sequence |
