Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95744.t1 | RHN60144.1 | 96.1 | 355 | 14 | 0 | 41 | 395 | 46 | 400 | 2.50E-192 | 681.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95744.t1 | O80668 | 65.3 | 366 | 110 | 6 | 42 | 397 | 59 | 417 | 7.9e-134 | 478.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95744.t1 | A0A396I7B4 | 96.1 | 355 | 14 | 0 | 41 | 395 | 46 | 400 | 1.8e-192 | 681.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057690 | MS.gene95744 | 0.834078 | 3.69E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95744 | MS.gene025228 | PPI |
| MS.gene037185 | MS.gene95744 | PPI |
| MS.gene95744 | MS.gene91774 | PPI |
| MS.gene040624 | MS.gene95744 | PPI |
| MS.gene64440 | MS.gene95744 | PPI |
| MS.gene073595 | MS.gene95744 | PPI |
| MS.gene95744 | MS.gene57268 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95744.t1 | MTR_4g037690 | 93.451 | 397 | 22 | 2 | 3 | 395 | 4 | 400 | 0.0 | 729 |
| MS.gene95744.t1 | MTR_7g089910 | 67.494 | 403 | 119 | 6 | 3 | 393 | 6 | 408 | 0.0 | 548 |
| MS.gene95744.t1 | MTR_7g089920 | 61.692 | 402 | 142 | 4 | 3 | 393 | 8 | 408 | 7.19e-178 | 502 |
| MS.gene95744.t1 | MTR_1g094620 | 41.404 | 413 | 210 | 6 | 6 | 395 | 16 | 419 | 3.15e-109 | 332 |
| MS.gene95744.t1 | MTR_1g094620 | 41.404 | 413 | 210 | 6 | 6 | 395 | 16 | 419 | 5.21e-109 | 331 |
| MS.gene95744.t1 | MTR_1g050328 | 42.607 | 399 | 203 | 6 | 21 | 395 | 26 | 422 | 1.09e-107 | 324 |
| MS.gene95744.t1 | MTR_7g062430 | 40.194 | 413 | 216 | 10 | 4 | 395 | 21 | 423 | 1.49e-91 | 286 |
| MS.gene95744.t1 | MTR_8g467180 | 45.556 | 270 | 145 | 1 | 128 | 395 | 19 | 288 | 2.43e-84 | 263 |
| MS.gene95744.t1 | MTR_7g062410 | 46.667 | 270 | 141 | 2 | 129 | 395 | 36 | 305 | 2.65e-80 | 253 |
| MS.gene95744.t1 | MTR_7g010790 | 43.284 | 268 | 150 | 1 | 130 | 395 | 43 | 310 | 1.44e-79 | 251 |
| MS.gene95744.t1 | MTR_8g467070 | 45.556 | 270 | 145 | 1 | 128 | 395 | 19 | 288 | 4.19e-79 | 250 |
| MS.gene95744.t1 | MTR_7g010750 | 43.284 | 268 | 150 | 1 | 130 | 395 | 42 | 309 | 4.30e-79 | 250 |
| MS.gene95744.t1 | MTR_8g465310 | 42.222 | 270 | 154 | 1 | 128 | 395 | 18 | 287 | 1.16e-77 | 246 |
| MS.gene95744.t1 | MTR_3g033730 | 43.657 | 268 | 149 | 1 | 130 | 395 | 43 | 310 | 1.35e-77 | 246 |
| MS.gene95744.t1 | MTR_8g467190 | 42.593 | 270 | 153 | 1 | 128 | 395 | 18 | 287 | 3.97e-77 | 244 |
| MS.gene95744.t1 | MTR_3g465510 | 40.377 | 265 | 156 | 1 | 133 | 395 | 46 | 310 | 5.07e-71 | 229 |
| MS.gene95744.t1 | MTR_3g465440 | 40.520 | 269 | 157 | 2 | 130 | 395 | 49 | 317 | 1.07e-66 | 227 |
| MS.gene95744.t1 | MTR_3g084960 | 37.407 | 270 | 165 | 1 | 130 | 395 | 79 | 348 | 1.59e-51 | 179 |
| MS.gene95744.t1 | MTR_2g067090 | 41.000 | 100 | 57 | 1 | 212 | 309 | 1 | 100 | 2.16e-19 | 88.2 |
| MS.gene95744.t1 | MTR_4g133495 | 42.500 | 80 | 46 | 0 | 212 | 291 | 1 | 80 | 4.65e-15 | 75.5 |
| MS.gene95744.t1 | MTR_4g133340 | 42.500 | 80 | 46 | 0 | 212 | 291 | 1 | 80 | 4.65e-15 | 75.5 |
| MS.gene95744.t1 | MTR_7g107090 | 27.239 | 268 | 169 | 7 | 130 | 381 | 14 | 271 | 1.08e-14 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95744.t1 | AT2G41190 | 59.905 | 419 | 137 | 8 | 3 | 397 | 6 | 417 | 1.26e-173 | 496 |
| MS.gene95744.t1 | AT2G41190 | 59.905 | 419 | 137 | 8 | 3 | 397 | 6 | 417 | 1.29e-173 | 494 |
| MS.gene95744.t1 | AT2G39130 | 42.790 | 423 | 204 | 8 | 3 | 395 | 14 | 428 | 1.02e-117 | 352 |
| MS.gene95744.t1 | AT2G39130 | 42.790 | 423 | 204 | 8 | 3 | 395 | 14 | 428 | 1.65e-117 | 353 |
| MS.gene95744.t1 | AT2G39130 | 42.790 | 423 | 204 | 8 | 3 | 395 | 14 | 428 | 1.65e-117 | 353 |
| MS.gene95744.t1 | AT3G54830 | 42.000 | 400 | 208 | 4 | 15 | 395 | 24 | 418 | 1.73e-112 | 340 |
| MS.gene95744.t1 | AT3G54830 | 42.000 | 400 | 208 | 4 | 15 | 395 | 24 | 418 | 1.73e-112 | 340 |
| MS.gene95744.t1 | AT5G02180 | 43.038 | 395 | 195 | 7 | 21 | 395 | 44 | 428 | 1.11e-104 | 320 |
| MS.gene95744.t1 | AT5G02180 | 43.038 | 395 | 195 | 7 | 21 | 395 | 44 | 428 | 1.11e-104 | 320 |
| MS.gene95744.t1 | AT5G02170 | 41.872 | 406 | 222 | 6 | 1 | 395 | 1 | 403 | 6.90e-103 | 315 |
| MS.gene95744.t1 | AT3G09340 | 41.320 | 409 | 212 | 9 | 5 | 395 | 4 | 402 | 4.52e-101 | 310 |
| MS.gene95744.t1 | AT3G09330 | 39.855 | 414 | 211 | 6 | 5 | 395 | 4 | 402 | 1.41e-96 | 298 |
| MS.gene95744.t1 | AT5G02170 | 37.931 | 406 | 209 | 7 | 1 | 395 | 1 | 374 | 3.90e-85 | 267 |
| MS.gene95744.t1 | AT5G15240 | 43.494 | 269 | 149 | 2 | 130 | 395 | 34 | 302 | 1.38e-76 | 244 |
| MS.gene95744.t1 | AT3G28960 | 43.657 | 268 | 149 | 1 | 130 | 395 | 17 | 284 | 1.82e-75 | 240 |
| MS.gene95744.t1 | AT3G28960 | 43.657 | 268 | 149 | 1 | 130 | 395 | 17 | 284 | 1.82e-75 | 240 |
| MS.gene95744.t1 | AT3G28960 | 43.657 | 268 | 149 | 1 | 130 | 395 | 17 | 284 | 1.82e-75 | 240 |
| MS.gene95744.t1 | AT3G28960 | 43.657 | 268 | 149 | 1 | 130 | 395 | 17 | 284 | 1.82e-75 | 240 |
| MS.gene95744.t1 | AT3G28960 | 44.860 | 214 | 116 | 1 | 184 | 395 | 2 | 215 | 2.20e-61 | 202 |
| MS.gene95744.t1 | AT5G15240 | 45.238 | 210 | 112 | 2 | 189 | 395 | 7 | 216 | 2.93e-59 | 196 |
| MS.gene95744.t1 | AT5G16740 | 36.194 | 268 | 166 | 3 | 130 | 395 | 34 | 298 | 7.73e-49 | 171 |
| MS.gene95744.t1 | AT5G15240 | 46.226 | 106 | 57 | 0 | 130 | 235 | 34 | 139 | 9.92e-25 | 103 |
| MS.gene95744.t1 | AT5G15240 | 49.123 | 57 | 29 | 0 | 339 | 395 | 136 | 192 | 2.75e-11 | 64.7 |
| MS.gene95744.t1 | AT2G42005 | 28.125 | 288 | 179 | 11 | 125 | 391 | 16 | 296 | 4.66e-16 | 79.7 |
| MS.gene95744.t1 | AT3G11900 | 26.296 | 270 | 169 | 5 | 130 | 381 | 32 | 289 | 3.68e-13 | 71.2 |
| MS.gene95744.t1 | AT3G11900 | 26.296 | 270 | 169 | 5 | 130 | 381 | 32 | 289 | 3.68e-13 | 71.2 |
Find 87 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTGCTATCGGTGTTTA+TGG | 0.115566 | 4.1:-54376740 | MS.gene95744:CDS |
| GCCATAGACTGGTATATATT+TGG | 0.252047 | 4.1:+54376689 | None:intergenic |
| CCAGCTTGTTTCACTGTATA+AGG | 0.261888 | 4.1:+54377771 | None:intergenic |
| ACAAGTGCATGGAATCTAAA+TGG | 0.306624 | 4.1:+54377029 | None:intergenic |
| GTCATGGGATTTCTCTCCTT+TGG | 0.324778 | 4.1:-54376502 | MS.gene95744:CDS |
| AATGCAGCTTCTCCTATATC+TGG | 0.338074 | 4.1:+54377645 | None:intergenic |
| TCCAAATATATACCAGTCTA+TGG | 0.345219 | 4.1:-54376690 | MS.gene95744:CDS |
| CGTAGAATTGACCCAACATT+TGG | 0.345455 | 4.1:+54378781 | None:intergenic |
| CGAATAATCTCGTATCTATC+AGG | 0.355309 | 4.1:-54376953 | MS.gene95744:intron |
| CATTTGCTATCGGTGTTTAT+GGG | 0.364364 | 4.1:-54376739 | MS.gene95744:CDS |
| CTGATAGATACGAGATTATT+CGG | 0.366356 | 4.1:+54376954 | None:intergenic |
| GGAGAAATGCCTCTTGGTTA+TGG | 0.367696 | 4.1:-54378616 | MS.gene95744:CDS |
| TAGTTATTCTACCTACTGTT+TGG | 0.374522 | 4.1:-54376988 | MS.gene95744:CDS |
| TTAGATTCCATGCACTTGTT+TGG | 0.384257 | 4.1:-54377025 | MS.gene95744:CDS |
| GTTTCGACGCAAAATCTTGT+TGG | 0.384654 | 4.1:-54378637 | MS.gene95744:CDS |
| ATGGAGACCACCTATATCTA+AGG | 0.391512 | 4.1:+54377048 | None:intergenic |
| AAGAGTAACTTAGACATAGA+TGG | 0.397624 | 4.1:-54378718 | MS.gene95744:CDS |
| AAACCATGTTATCAATGCTT+TGG | 0.398792 | 4.1:+54376649 | None:intergenic |
| CTTCTCCTTGTTGCTACCCA+TGG | 0.404976 | 4.1:+54379974 | None:intergenic |
| TCTACCTACTGTTTGGTTGA+AGG | 0.405295 | 4.1:-54376981 | MS.gene95744:CDS |
| CCTATATCTAAGGACGTTCC+AGG | 0.408252 | 4.1:+54377058 | None:intergenic |
| TAATTATACTTGTAGCTTTG+AGG | 0.411525 | 4.1:+54379825 | None:intergenic |
| GAAGCTGCATTTGGTAGATA+TGG | 0.412089 | 4.1:-54377633 | MS.gene95744:CDS |
| ATACTGGTCAAGTGGTGAAT+TGG | 0.412886 | 4.1:-54376772 | MS.gene95744:CDS |
| TTCTCTGTCGGGACGACTGT+TGG | 0.415434 | 4.1:-54376803 | MS.gene95744:CDS |
| CCTGGAACGTCCTTAGATAT+AGG | 0.416395 | 4.1:-54377058 | MS.gene95744:CDS |
| TTATATGTGTGTTCTCTGTC+GGG | 0.442667 | 4.1:-54376814 | MS.gene95744:CDS |
| CCATAAACACCGATAGCAAA+TGG | 0.443230 | 4.1:+54376740 | None:intergenic |
| CTCACTAGCTATCCAGATAT+AGG | 0.449436 | 4.1:-54377657 | MS.gene95744:CDS |
| CTTGTTGGAGAAATGCCTCT+TGG | 0.449496 | 4.1:-54378622 | MS.gene95744:CDS |
| ATTATATGTGTGTTCTCTGT+CGG | 0.451454 | 4.1:-54376815 | MS.gene95744:CDS |
| GATATAGGAGAAGCTGCATT+TGG | 0.453097 | 4.1:-54377642 | MS.gene95744:CDS |
| AACCTCACTAGTCTGTTTCC+TGG | 0.457319 | 4.1:-54377076 | MS.gene95744:CDS |
| TTTCAAAGCAGTGTCTCATA+AGG | 0.457911 | 4.1:+54377691 | None:intergenic |
| TGTTGTCCACAATGCAACTT+TGG | 0.466483 | 4.1:+54376426 | None:intergenic |
| AGTCTTTCACTTCTCAGCAA+TGG | 0.473887 | 4.1:-54379848 | MS.gene95744:CDS |
| TTGCTACAGCTCCAAATGTT+GGG | 0.484137 | 4.1:-54378792 | MS.gene95744:CDS |
| ATATGGAAGCGTTGCAGTCA+TGG | 0.497065 | 4.1:-54376518 | MS.gene95744:CDS |
| AGTGGCATTCCATTTGCTAT+CGG | 0.509855 | 4.1:-54376749 | MS.gene95744:CDS |
| AATTGTAATCTTCAGTTGGA+GGG | 0.512566 | 4.1:-54376859 | MS.gene95744:intron |
| CACTGCTTTGAAAGCAGAGA+AGG | 0.514432 | 4.1:-54377681 | MS.gene95744:CDS |
| GTGAAACAAGCTGGTTGGAT+GGG | 0.515009 | 4.1:-54377762 | MS.gene95744:CDS |
| GTGGATTGAGTAGTACCTTC+AGG | 0.517210 | 4.1:+54378673 | None:intergenic |
| GGATTTCTCTCCTTTGGCGA+TGG | 0.518996 | 4.1:-54376496 | MS.gene95744:CDS |
| ATTGCTACAGCTCCAAATGT+TGG | 0.522187 | 4.1:-54378793 | MS.gene95744:CDS |
| TCACCACTTGACCAGTATGA+TGG | 0.524418 | 4.1:+54376777 | None:intergenic |
| CCTTCAGGACCTGATAGAAA+AGG | 0.524913 | 4.1:+54378688 | None:intergenic |
| ATCATTATCACTGCTACTCT+CGG | 0.531080 | 4.1:+54379893 | None:intergenic |
| TATGGAAGCGTTGCAGTCAT+GGG | 0.537982 | 4.1:-54376517 | MS.gene95744:CDS |
| GCAGGGATTAATGTGATGGC+TGG | 0.538521 | 4.1:-54377813 | MS.gene95744:intron |
| GATTAATGTGATGGCTGGAG+TGG | 0.539557 | 4.1:-54377808 | MS.gene95744:CDS |
| AGTGAAACAAGCTGGTTGGA+TGG | 0.539750 | 4.1:-54377763 | MS.gene95744:CDS |
| AAACTTGAATAAATAAAACT+TGG | 0.540383 | 4.1:+54378754 | None:intergenic |
| TTCAAAGCAGTGTCTCATAA+GGG | 0.544361 | 4.1:+54377692 | None:intergenic |
| TTGGAAGCAAATGCACCTGC+TGG | 0.551872 | 4.1:+54376445 | None:intergenic |
| ACAAGCTGGTTGGATGGGAT+TGG | 0.570252 | 4.1:-54377757 | MS.gene95744:CDS |
| GTGGAATTCATCACCTTGGA+AGG | 0.570968 | 4.1:-54377103 | MS.gene95744:CDS |
| CATGGGTAGCAACAAGGAGA+AGG | 0.575458 | 4.1:-54379973 | MS.gene95744:CDS |
| ACTGTTGGATTCCATCATAC+TGG | 0.583198 | 4.1:-54376788 | MS.gene95744:CDS |
| CAGAACTCCAAACAAGTGCA+TGG | 0.588405 | 4.1:+54377018 | None:intergenic |
| TACTACTCAATCCACGTGGT+GGG | 0.588625 | 4.1:-54378665 | MS.gene95744:CDS |
| CCTTATACAGTGAAACAAGC+TGG | 0.589496 | 4.1:-54377771 | MS.gene95744:CDS |
| AGTGAGGTTATCTCCTTCCA+AGG | 0.594104 | 4.1:+54377090 | None:intergenic |
| TTGTGTGGAATTCATCACCT+TGG | 0.594337 | 4.1:-54377107 | MS.gene95744:CDS |
| ATACAGTGAAACAAGCTGGT+TGG | 0.598323 | 4.1:-54377767 | MS.gene95744:CDS |
| ATAACATTGAATATGCCAGC+AGG | 0.602080 | 4.1:-54376460 | MS.gene95744:CDS |
| TTGCTTCCAAAGTTGCATTG+TGG | 0.603627 | 4.1:-54376432 | MS.gene95744:CDS |
| CTTTGCAGGGATTAATGTGA+TGG | 0.604391 | 4.1:-54377817 | MS.gene95744:intron |
| AGACAAAGTGCCATCGCCAA+AGG | 0.605042 | 4.1:+54376486 | None:intergenic |
| GTTTATGTTTAACGATGATG+TGG | 0.606179 | 4.1:-54379937 | MS.gene95744:CDS |
| CTGTATAAGGTGTAGACAGA+AGG | 0.606609 | 4.1:+54377784 | None:intergenic |
| ATACCAAAGCATTGATAACA+TGG | 0.607987 | 4.1:-54376652 | MS.gene95744:intron |
| TATGTTTAACGATGATGTGG+AGG | 0.611095 | 4.1:-54379934 | MS.gene95744:CDS |
| ATTAATGTGATGGCTGGAGT+GGG | 0.612021 | 4.1:-54377807 | MS.gene95744:CDS |
| TGCAACCATGGGTAGCAACA+AGG | 0.614317 | 4.1:-54379979 | None:intergenic |
| AGATCCTTCAACCAAACAGT+AGG | 0.623618 | 4.1:+54376977 | None:intergenic |
| ATTCCATCATACTGGTCAAG+TGG | 0.635735 | 4.1:-54376780 | MS.gene95744:CDS |
| CGAAACTTTCTCCCACCACG+TGG | 0.656804 | 4.1:+54378654 | None:intergenic |
| ATGAGTGCAGTCATATTGTG+TGG | 0.658463 | 4.1:-54377122 | MS.gene95744:intron |
| GGAACGTCCTTAGATATAGG+TGG | 0.659506 | 4.1:-54377055 | MS.gene95744:CDS |
| GTACTACTCAATCCACGTGG+TGG | 0.679281 | 4.1:-54378666 | MS.gene95744:CDS |
| AAAGCAGTGTCTCATAAGGG+TGG | 0.680775 | 4.1:+54377695 | None:intergenic |
| AAGCTGCAACCATAACCAAG+AGG | 0.693776 | 4.1:+54378607 | None:intergenic |
| GGTCAAGTGGTGAATTGGAG+TGG | 0.694997 | 4.1:-54376767 | MS.gene95744:CDS |
| TTCCAGGAAACAGACTAGTG+AGG | 0.728202 | 4.1:+54377074 | None:intergenic |
| AATGTTGGGTCAATTCTACG+AGG | 0.796883 | 4.1:-54378778 | MS.gene95744:CDS |
| AAGGTACTACTCAATCCACG+TGG | 0.819860 | 4.1:-54378669 | MS.gene95744:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTCTTTTACTATTTAT+AGG | - | chr4.1:54378235-54378254 | MS.gene95744:intron | 10.0% |
| !!! | ATTTATTTTCTTTTATTTTG+GGG | - | chr4.1:54377940-54377959 | MS.gene95744:intron | 10.0% |
| !! | AAACTTGAATAAATAAAACT+TGG | + | chr4.1:54377571-54377590 | None:intergenic | 15.0% |
| !! | TCTAGTATTAAATTTATTAG+TGG | + | chr4.1:54378082-54378101 | None:intergenic | 15.0% |
| !!! | AGGTTTTATTTTTATGTATT+AGG | - | chr4.1:54378795-54378814 | MS.gene95744:CDS | 15.0% |
| !!! | TTTTATTTTTATGTATTAGG+TGG | - | chr4.1:54378798-54378817 | MS.gene95744:CDS | 15.0% |
| !! | AAGAGTAACAATAACAAAAA+TGG | + | chr4.1:54376584-54376603 | None:intergenic | 20.0% |
| !! | AATTTAAAAAGTGATGTGAA+CGG | + | chr4.1:54377288-54377307 | None:intergenic | 20.0% |
| !! | AGAGTAACAATAACAAAAAT+GGG | + | chr4.1:54376583-54376602 | None:intergenic | 20.0% |
| !! | AGTCACAAAAATAAAAAAAG+CGG | + | chr4.1:54379155-54379174 | None:intergenic | 20.0% |
| !! | ATAAACACAAGATTTCAATA+AGG | + | chr4.1:54378747-54378766 | None:intergenic | 20.0% |
| !! | ATCAATATGATAGAAAAAGA+AGG | + | chr4.1:54376984-54377003 | None:intergenic | 20.0% |
| !! | ATTACAAGCAATATAAGTTA+TGG | + | chr4.1:54377922-54377941 | None:intergenic | 20.0% |
| !! | TAAATTAGTTAACTACTGTT+CGG | - | chr4.1:54377302-54377321 | MS.gene95744:intron | 20.0% |
| !! | TGAAAAGATTCTTAAACATA+CGG | + | chr4.1:54379181-54379200 | None:intergenic | 20.0% |
| !! | TTATTGAAATCTTGTGTTTA+TGG | - | chr4.1:54378746-54378765 | MS.gene95744:CDS | 20.0% |
| !! | TTCAAAGGAATTGTATAAAA+TGG | + | chr4.1:54379131-54379150 | None:intergenic | 20.0% |
| !! | TTGTACTAGTTGTATATAAT+TGG | + | chr4.1:54378215-54378234 | None:intergenic | 20.0% |
| !!! | AAATAGTTTGCATATTTGTA+TGG | + | chr4.1:54377381-54377400 | None:intergenic | 20.0% |
| !!! | CTAAATATTTTAACGTGTTA+GGG | + | chr4.1:54377072-54377091 | None:intergenic | 20.0% |
| !!! | GAAATTTTGAGTAATGTTTA+AGG | + | chr4.1:54378137-54378156 | None:intergenic | 20.0% |
| !!! | GTATTTCTTTTTGAATAGTA+TGG | + | chr4.1:54378107-54378126 | None:intergenic | 20.0% |
| !!! | GTTTTGTGTTTTTTGATATA+TGG | - | chr4.1:54379787-54379806 | MS.gene95744:intron | 20.0% |
| !!! | TTACTTTGTATTTTCACTTT+TGG | - | chr4.1:54376552-54376571 | MS.gene95744:intron | 20.0% |
| ! | AAATTAGTTAACTACTGTTC+GGG | - | chr4.1:54377303-54377322 | MS.gene95744:intron | 25.0% |
| ! | AACTCACAGATACAAAAATA+CGG | + | chr4.1:54378715-54378734 | None:intergenic | 25.0% |
| ! | AAGAACTTGTGCAAATTATA+TGG | - | chr4.1:54376920-54376939 | MS.gene95744:intron | 25.0% |
| ! | AAGTAGGGAATATATTCTAA+TGG | + | chr4.1:54377409-54377428 | None:intergenic | 25.0% |
| ! | AATAAAAAAAGCGGTTTCAA+AGG | + | chr4.1:54379146-54379165 | None:intergenic | 25.0% |
| ! | AGAACTTGTGCAAATTATAT+GGG | - | chr4.1:54376921-54376940 | MS.gene95744:intron | 25.0% |
| ! | ATTGAGAAATAGCAAAAGTA+GGG | + | chr4.1:54377424-54377443 | None:intergenic | 25.0% |
| ! | CCTAACACGTTAAAATATTT+AGG | - | chr4.1:54377070-54377089 | MS.gene95744:CDS | 25.0% |
| ! | CTTCTTGCAAATACATAATA+AGG | + | chr4.1:54377893-54377912 | None:intergenic | 25.0% |
| ! | GTCAAAATTGAAATCAAGTA+TGG | + | chr4.1:54378461-54378480 | None:intergenic | 25.0% |
| ! | TTACAGTGACATTAAAAGTT+AGG | + | chr4.1:54379703-54379722 | None:intergenic | 25.0% |
| ! | TTATATAATCCAAACTGCAT+AGG | + | chr4.1:54377018-54377037 | None:intergenic | 25.0% |
| ! | TTGTTTAAAAAGCTGATATG+AGG | - | chr4.1:54378408-54378427 | MS.gene95744:intron | 25.0% |
| ! | TTTCTTTCTCTTCTAGATTT+AGG | - | chr4.1:54378835-54378854 | MS.gene95744:intron | 25.0% |
| !! | AGTGGTTTCTTTTATGTATT+AGG | - | chr4.1:54378775-54378794 | MS.gene95744:CDS | 25.0% |
| !! | ATCTTATGATATGTTTTCTC+AGG | + | chr4.1:54378987-54379006 | None:intergenic | 25.0% |
| !! | TAATTATACTTGTAGCTTTG+AGG | + | chr4.1:54376500-54376519 | None:intergenic | 25.0% |
| !! | TCTTATGATATGTTTTCTCA+GGG | + | chr4.1:54378986-54379005 | None:intergenic | 25.0% |
| !! | TTACAATTGAAGTTCTAATG+AGG | + | chr4.1:54379451-54379470 | None:intergenic | 25.0% |
| !! | TTGACTCAAACAATTTTCAA+TGG | - | chr4.1:54377736-54377755 | MS.gene95744:CDS | 25.0% |
| !! | TTTTCCAACAAACAAATTAG+TGG | - | chr4.1:54379030-54379049 | MS.gene95744:intron | 25.0% |
| !!! | AAAACCACTAATTTGTTTGT+TGG | + | chr4.1:54379037-54379056 | None:intergenic | 25.0% |
| !!! | ACTTGATTTCAATTTTGACA+CGG | - | chr4.1:54378462-54378481 | MS.gene95744:intron | 25.0% |
| !!! | CAGTAAGTTTGAAACTTTTT+TGG | - | chr4.1:54379917-54379936 | MS.gene95744:CDS | 25.0% |
| !!! | CCTAAATATTTTAACGTGTT+AGG | + | chr4.1:54377073-54377092 | None:intergenic | 25.0% |
| !!! | TTTTCTTTTATTTTGGGGTA+AGG | - | chr4.1:54377945-54377964 | MS.gene95744:intron | 25.0% |
| AAACCATGTTATCAATGCTT+TGG | + | chr4.1:54379676-54379695 | None:intergenic | 30.0% | |
| AACGGTAGTTAACTATTGTT+GGG | + | chr4.1:54376679-54376698 | None:intergenic | 30.0% | |
| AAGAGTAACTTAGACATAGA+TGG | - | chr4.1:54377604-54377623 | MS.gene95744:intron | 30.0% | |
| AAGTTATTGTATACCGAGTT+TGG | - | chr4.1:54377847-54377866 | MS.gene95744:intron | 30.0% | |
| AATTAGTTAACTACTGTTCG+GGG | - | chr4.1:54377304-54377323 | MS.gene95744:intron | 30.0% | |
| AATTGTAATCTTCAGTTGGA+GGG | - | chr4.1:54379463-54379482 | MS.gene95744:intron | 30.0% | |
| ACCCAAATTAGAGAACTATA+TGG | - | chr4.1:54377149-54377168 | MS.gene95744:intron | 30.0% | |
| ATGATTAGAATGTCCAAACT+CGG | + | chr4.1:54377863-54377882 | None:intergenic | 30.0% | |
| ATTATATGGGGTCTCAAATA+AGG | - | chr4.1:54376934-54376953 | MS.gene95744:intron | 30.0% | |
| ATTATATGTGTGTTCTCTGT+CGG | - | chr4.1:54379507-54379526 | MS.gene95744:intron | 30.0% | |
| CCAAATTAGAGAACTATATG+GGG | - | chr4.1:54377151-54377170 | MS.gene95744:intron | 30.0% | |
| CCCAAATTAGAGAACTATAT+GGG | - | chr4.1:54377150-54377169 | MS.gene95744:intron | 30.0% | |
| CCCATATAGTTCTCTAATTT+GGG | + | chr4.1:54377153-54377172 | None:intergenic | 30.0% | |
| CTGATAGATACGAGATTATT+CGG | + | chr4.1:54379371-54379390 | None:intergenic | 30.0% | |
| CTTCAATTGTAATCTTCAGT+TGG | - | chr4.1:54379459-54379478 | MS.gene95744:intron | 30.0% | |
| GAACTTGTGCAAATTATATG+GGG | - | chr4.1:54376922-54376941 | MS.gene95744:intron | 30.0% | |
| GATATAAGAGATTGCTTTGT+AGG | - | chr4.1:54377197-54377216 | MS.gene95744:intron | 30.0% | |
| GATTGAGAAATAGCAAAAGT+AGG | + | chr4.1:54377425-54377444 | None:intergenic | 30.0% | |
| GGGAATATATTCTAATGGAA+TGG | + | chr4.1:54377404-54377423 | None:intergenic | 30.0% | |
| GTGTTTGTGAACAATTTCTA+GGG | + | chr4.1:54377224-54377243 | None:intergenic | 30.0% | |
| GTTTATGTTTAACGATGATG+TGG | - | chr4.1:54376385-54376404 | MS.gene95744:intron | 30.0% | |
| TAGTATCATTAGTGGGAAAA+GGG | + | chr4.1:54376895-54376914 | None:intergenic | 30.0% | |
| TAGTTATTCTACCTACTGTT+TGG | - | chr4.1:54379334-54379353 | MS.gene95744:intron | 30.0% | |
| TATGGGATGTTTATGTTGTT+CGG | + | chr4.1:54377042-54377061 | None:intergenic | 30.0% | |
| TCCAAATATATACCAGTCTA+TGG | - | chr4.1:54379632-54379651 | MS.gene95744:intron | 30.0% | |
| TTCAAGCTAGTATCATTAGT+GGG | + | chr4.1:54376902-54376921 | None:intergenic | 30.0% | |
| TTGTGTTTATGGTTGTTAAG+TGG | - | chr4.1:54378757-54378776 | MS.gene95744:CDS | 30.0% | |
| TTTGGTAGAATTGAGTTAGA+TGG | - | chr4.1:54376851-54376870 | MS.gene95744:intron | 30.0% | |
| ! | TCAGCTTTTTAAACAAACAG+TGG | + | chr4.1:54378404-54378423 | None:intergenic | 30.0% |
| ! | TGTTTGTGAACAATTTCTAG+GGG | + | chr4.1:54377223-54377242 | None:intergenic | 30.0% |
| !! | AAGATTGTTGTTTACGCTAA+AGG | - | chr4.1:54376616-54376635 | MS.gene95744:intron | 30.0% |
| !! | ATACCAAAGCATTGATAACA+TGG | - | chr4.1:54379670-54379689 | MS.gene95744:intron | 30.0% |
| !! | TTGCTATTTCTCAATCTTCT+GGG | - | chr4.1:54377429-54377448 | MS.gene95744:intron | 30.0% |
| !! | TTTGCTATTTCTCAATCTTC+TGG | - | chr4.1:54377428-54377447 | MS.gene95744:intron | 30.0% |
| !!! | TCTCTCGATGCTATTTTAAT+AGG | - | chr4.1:54379940-54379959 | MS.gene95744:CDS | 30.0% |
| AAAACCTCTGTTGTCAAAAG+CGG | + | chr4.1:54378378-54378397 | None:intergenic | 35.0% | |
| AAAGACTGTTATCACACATC+TGG | + | chr4.1:54376759-54376778 | None:intergenic | 35.0% | |
| AACGGTAGTTAACTACCAAT+GGG | + | chr4.1:54377270-54377289 | None:intergenic | 35.0% | |
| ACAAGTGCATGGAATCTAAA+TGG | + | chr4.1:54379296-54379315 | None:intergenic | 35.0% | |
| ACGGTAGTTAACTATTGTTG+GGG | + | chr4.1:54376678-54376697 | None:intergenic | 35.0% | |
| ACGTGTTAGGGAGATTTATA+TGG | + | chr4.1:54377060-54377079 | None:intergenic | 35.0% | |
| AGGGATAGCAAAATCGAAAA+TGG | - | chr4.1:54378183-54378202 | MS.gene95744:intron | 35.0% | |
| ATAACATTGAATATGCCAGC+AGG | - | chr4.1:54379862-54379881 | MS.gene95744:CDS | 35.0% | |
| ATCATTATCACTGCTACTCT+CGG | + | chr4.1:54376432-54376451 | None:intergenic | 35.0% | |
| CAATTGTAATCTTCAGTTGG+AGG | - | chr4.1:54379462-54379481 | MS.gene95744:intron | 35.0% | |
| CACATTGTCAAATCTAGCAT+TGG | + | chr4.1:54378930-54378949 | None:intergenic | 35.0% | |
| CAGATGCAAAAATAAGCATC+AGG | + | chr4.1:54378592-54378611 | None:intergenic | 35.0% | |
| CATGAGCAAATTAGACTTTG+AGG | + | chr4.1:54378878-54378897 | None:intergenic | 35.0% | |
| CCCCATATAGTTCTCTAATT+TGG | + | chr4.1:54377154-54377173 | None:intergenic | 35.0% | |
| CGAATAATCTCGTATCTATC+AGG | - | chr4.1:54379369-54379388 | MS.gene95744:intron | 35.0% | |
| CGTGTTAGGGAGATTTATAT+GGG | + | chr4.1:54377059-54377078 | None:intergenic | 35.0% | |
| CTAGTATCATTAGTGGGAAA+AGG | + | chr4.1:54376896-54376915 | None:intergenic | 35.0% | |
| CTTCAAGCTAGTATCATTAG+TGG | + | chr4.1:54376903-54376922 | None:intergenic | 35.0% | |
| GAACGGTAGTTAACTATTGT+TGG | + | chr4.1:54376680-54376699 | None:intergenic | 35.0% | |
| GCCATAGACTGGTATATATT+TGG | + | chr4.1:54379636-54379655 | None:intergenic | 35.0% | |
| GGTAAACATGTGAATGAGAT+TGG | - | chr4.1:54377450-54377469 | MS.gene95744:intron | 35.0% | |
| GGTGTTTGTGAACAATTTCT+AGG | + | chr4.1:54377225-54377244 | None:intergenic | 35.0% | |
| TACTATTTATAGGTCCGCTT+TGG | - | chr4.1:54378245-54378264 | MS.gene95744:intron | 35.0% | |
| TAGCGTAAACAACAATCTTC+TGG | + | chr4.1:54376615-54376634 | None:intergenic | 35.0% | |
| TATGTTTAACGATGATGTGG+AGG | - | chr4.1:54376388-54376407 | MS.gene95744:intron | 35.0% | |
| TCTCTAATTTGGGTCTTGAT+TGG | + | chr4.1:54377143-54377162 | None:intergenic | 35.0% | |
| TCTGTAGTCTCTCTGTTAAA+AGG | + | chr4.1:54377499-54377518 | None:intergenic | 35.0% | |
| TTAGATTCCATGCACTTGTT+TGG | - | chr4.1:54379297-54379316 | MS.gene95744:intron | 35.0% | |
| TTATATGTGTGTTCTCTGTC+GGG | - | chr4.1:54379508-54379527 | MS.gene95744:intron | 35.0% | |
| TTCAAAGCAGTGTCTCATAA+GGG | + | chr4.1:54378633-54378652 | None:intergenic | 35.0% | |
| TTGCATAGCTTAGTAAGCTT+TGG | - | chr4.1:54376833-54376852 | MS.gene95744:CDS | 35.0% | |
| TTTCAAAGCAGTGTCTCATA+AGG | + | chr4.1:54378634-54378653 | None:intergenic | 35.0% | |
| ! | ATTTAGGATTTGACAACGTG+TGG | - | chr4.1:54378851-54378870 | MS.gene95744:intron | 35.0% |
| ! | ATTTTCTCTTTTGCAGCGAA+CGG | + | chr4.1:54376697-54376716 | None:intergenic | 35.0% |
| ! | GTATTTTCATCGGTAGTTTG+AGG | + | chr4.1:54377246-54377265 | None:intergenic | 35.0% |
| !! | CAATTTTGACACGGATTATG+AGG | - | chr4.1:54378471-54378490 | MS.gene95744:intron | 35.0% |
| !! | CATTTGCTATCGGTGTTTAT+GGG | - | chr4.1:54379583-54379602 | MS.gene95744:intron | 35.0% |
| !!! | ACTATTGTTGGGGGTATTTT+TGG | + | chr4.1:54376668-54376687 | None:intergenic | 35.0% |
| !!! | AGGATTTTAGAATCCGAACA+GGG | - | chr4.1:54377090-54377109 | MS.gene95744:CDS | 35.0% |
| !!! | TAGGATTTTAGAATCCGAAC+AGG | - | chr4.1:54377089-54377108 | MS.gene95744:CDS | 35.0% |
| !!! | TATTTTGGGGTAAGGATGAA+GGG | - | chr4.1:54377953-54377972 | MS.gene95744:intron | 35.0% |
| !!! | TTATTTTGGGGTAAGGATGA+AGG | - | chr4.1:54377952-54377971 | MS.gene95744:intron | 35.0% |
| AATGCAGCTTCTCCTATATC+TGG | + | chr4.1:54378680-54378699 | None:intergenic | 40.0% | |
| AATGTTGGGTCAATTCTACG+AGG | - | chr4.1:54377544-54377563 | MS.gene95744:intron | 40.0% | |
| ACGGTAGTTAACTACCAATG+GGG | + | chr4.1:54377269-54377288 | None:intergenic | 40.0% | |
| ACTGTTGGATTCCATCATAC+TGG | - | chr4.1:54379534-54379553 | MS.gene95744:intron | 40.0% | |
| AGATCCTTCAACCAAACAGT+AGG | + | chr4.1:54379348-54379367 | None:intergenic | 40.0% | |
| AGGTGATGATATGACTTTGC+AGG | - | chr4.1:54378491-54378510 | MS.gene95744:intron | 40.0% | |
| AGTCTTTCACTTCTCAGCAA+TGG | - | chr4.1:54376474-54376493 | MS.gene95744:CDS | 40.0% | |
| ATACAGTGAAACAAGCTGGT+TGG | - | chr4.1:54378555-54378574 | MS.gene95744:intron | 40.0% | |
| ATACTGGTCAAGTGGTGAAT+TGG | - | chr4.1:54379550-54379569 | MS.gene95744:intron | 40.0% | |
| ATGAGTGCAGTCATATTGTG+TGG | - | chr4.1:54379200-54379219 | MS.gene95744:intron | 40.0% | |
| ATGGAGACCACCTATATCTA+AGG | + | chr4.1:54379277-54379296 | None:intergenic | 40.0% | |
| ATGGGGTCTCAAATAAGGAA+TGG | - | chr4.1:54376939-54376958 | MS.gene95744:intron | 40.0% | |
| ATTAATGTGATGGCTGGAGT+GGG | - | chr4.1:54378515-54378534 | MS.gene95744:intron | 40.0% | |
| ATTCCATCATACTGGTCAAG+TGG | - | chr4.1:54379542-54379561 | MS.gene95744:intron | 40.0% | |
| ATTGCTACAGCTCCAAATGT+TGG | - | chr4.1:54377529-54377548 | MS.gene95744:intron | 40.0% | |
| CCATAAACACCGATAGCAAA+TGG | + | chr4.1:54379585-54379604 | None:intergenic | 40.0% | |
| CCTTATACAGTGAAACAAGC+TGG | - | chr4.1:54378551-54378570 | MS.gene95744:intron | 40.0% | |
| CGGTAGTTAACTATTGTTGG+GGG | + | chr4.1:54376677-54376696 | None:intergenic | 40.0% | |
| CGTAGAATTGACCCAACATT+TGG | + | chr4.1:54377544-54377563 | None:intergenic | 40.0% | |
| CTCACTAGCTATCCAGATAT+AGG | - | chr4.1:54378665-54378684 | MS.gene95744:CDS | 40.0% | |
| CTGTATAAGGTGTAGACAGA+AGG | + | chr4.1:54378541-54378560 | None:intergenic | 40.0% | |
| CTTTGCAGGGATTAATGTGA+TGG | - | chr4.1:54378505-54378524 | MS.gene95744:intron | 40.0% | |
| GAACGGTAGTTAACTACCAA+TGG | + | chr4.1:54377271-54377290 | None:intergenic | 40.0% | |
| GAAGCTGCATTTGGTAGATA+TGG | - | chr4.1:54378689-54378708 | MS.gene95744:CDS | 40.0% | |
| GAAGTCCTTAAGCAAGCTTA+AGG | + | chr4.1:54377177-54377196 | None:intergenic | 40.0% | |
| GATATAGGAGAAGCTGCATT+TGG | - | chr4.1:54378680-54378699 | MS.gene95744:CDS | 40.0% | |
| GCATGCAAAGAAATACGTTG+AGG | + | chr4.1:54379761-54379780 | None:intergenic | 40.0% | |
| GGTGATGATATGACTTTGCA+GGG | - | chr4.1:54378492-54378511 | MS.gene95744:intron | 40.0% | |
| GTTTCGACGCAAAATCTTGT+TGG | - | chr4.1:54377685-54377704 | MS.gene95744:CDS | 40.0% | |
| TCTACCTACTGTTTGGTTGA+AGG | - | chr4.1:54379341-54379360 | MS.gene95744:intron | 40.0% | |
| TGTTGTCCACAATGCAACTT+TGG | + | chr4.1:54379899-54379918 | None:intergenic | 40.0% | |
| TTGCTACAGCTCCAAATGTT+GGG | - | chr4.1:54377530-54377549 | MS.gene95744:intron | 40.0% | |
| TTGCTTCCAAAGTTGCATTG+TGG | - | chr4.1:54379890-54379909 | MS.gene95744:CDS | 40.0% | |
| TTGTGTGGAATTCATCACCT+TGG | - | chr4.1:54379215-54379234 | MS.gene95744:intron | 40.0% | |
| ! | CCAGCTTGTTTCACTGTATA+AGG | + | chr4.1:54378554-54378573 | None:intergenic | 40.0% |
| ! | GCTTTTGACAACAGAGGTTT+TGG | - | chr4.1:54378377-54378396 | MS.gene95744:intron | 40.0% |
| ! | GGAAAGACTCCTTTTCTATC+AGG | - | chr4.1:54377625-54377644 | MS.gene95744:CDS | 40.0% |
| ! | GTTTATGGGTTTTGCTTTGC+AGG | - | chr4.1:54379597-54379616 | MS.gene95744:intron | 40.0% |
| !! | AGTGGCATTCCATTTGCTAT+CGG | - | chr4.1:54379573-54379592 | MS.gene95744:intron | 40.0% |
| !! | CCATTTGCTATCGGTGTTTA+TGG | - | chr4.1:54379582-54379601 | MS.gene95744:intron | 40.0% |
| !!! | ACCAATGGGGGTATTTTCAT+CGG | + | chr4.1:54377256-54377275 | None:intergenic | 40.0% |
| !!! | GTTTTTTGTCAGCCATAGAC+TGG | + | chr4.1:54379647-54379666 | None:intergenic | 40.0% |
| AAAGCAGTGTCTCATAAGGG+TGG | + | chr4.1:54378630-54378649 | None:intergenic | 45.0% | |
| AAGCTGCAACCATAACCAAG+AGG | + | chr4.1:54377718-54377737 | None:intergenic | 45.0% | |
| ACCGATGAAAATACCCCCAT+TGG | - | chr4.1:54377252-54377271 | MS.gene95744:intron | 45.0% | |
| AGTGAAACAAGCTGGTTGGA+TGG | - | chr4.1:54378559-54378578 | MS.gene95744:intron | 45.0% | |
| AGTGAGGTTATCTCCTTCCA+AGG | + | chr4.1:54379235-54379254 | None:intergenic | 45.0% | |
| ATTAAGCAGTAAACCGCAGC+TGG | - | chr4.1:54376715-54376734 | MS.gene95744:CDS | 45.0% | |
| CACGTATCAGAAGTGGAAAG+CGG | + | chr4.1:54378271-54378290 | None:intergenic | 45.0% | |
| CAGAACTCCAAACAAGTGCA+TGG | + | chr4.1:54379307-54379326 | None:intergenic | 45.0% | |
| CCTATATCTAAGGACGTTCC+AGG | + | chr4.1:54379267-54379286 | None:intergenic | 45.0% | |
| CCTGGAACGTCCTTAGATAT+AGG | - | chr4.1:54379264-54379283 | MS.gene95744:intron | 45.0% | |
| CCTTCAGGACCTGATAGAAA+AGG | + | chr4.1:54377637-54377656 | None:intergenic | 45.0% | |
| CGGTAGTTAACTACCAATGG+GGG | + | chr4.1:54377268-54377287 | None:intergenic | 45.0% | |
| CTTGTTGGAGAAATGCCTCT+TGG | - | chr4.1:54377700-54377719 | MS.gene95744:CDS | 45.0% | |
| GATTAATGTGATGGCTGGAG+TGG | - | chr4.1:54378514-54378533 | MS.gene95744:intron | 45.0% | |
| GGAACGTCCTTAGATATAGG+TGG | - | chr4.1:54379267-54379286 | MS.gene95744:intron | 45.0% | |
| GGAGAAATGCCTCTTGGTTA+TGG | - | chr4.1:54377706-54377725 | MS.gene95744:CDS | 45.0% | |
| GTCATGGGATTTCTCTCCTT+TGG | - | chr4.1:54379820-54379839 | MS.gene95744:intron | 45.0% | |
| GTGAAACAAGCTGGTTGGAT+GGG | - | chr4.1:54378560-54378579 | MS.gene95744:intron | 45.0% | |
| GTGGAATTCATCACCTTGGA+AGG | - | chr4.1:54379219-54379238 | MS.gene95744:intron | 45.0% | |
| TACTACTCAATCCACGTGGT+GGG | - | chr4.1:54377657-54377676 | MS.gene95744:CDS | 45.0% | |
| TCACCACTTGACCAGTATGA+TGG | + | chr4.1:54379548-54379567 | None:intergenic | 45.0% | |
| TTAAGCAGTAAACCGCAGCT+GGG | - | chr4.1:54376716-54376735 | MS.gene95744:CDS | 45.0% | |
| TTCCAGGAAACAGACTAGTG+AGG | + | chr4.1:54379251-54379270 | None:intergenic | 45.0% | |
| ! | AACCTCACTAGTCTGTTTCC+TGG | - | chr4.1:54379246-54379265 | MS.gene95744:intron | 45.0% |
| ! | AAGGTACTACTCAATCCACG+TGG | - | chr4.1:54377653-54377672 | MS.gene95744:CDS | 45.0% |
| ! | CCTTTTCTATCAGGTCCTGA+AGG | - | chr4.1:54377634-54377653 | MS.gene95744:CDS | 45.0% |
| ! | GTGGATTGAGTAGTACCTTC+AGG | + | chr4.1:54377652-54377671 | None:intergenic | 45.0% |
| !! | ATATGGAAGCGTTGCAGTCA+TGG | - | chr4.1:54379804-54379823 | MS.gene95744:intron | 45.0% |
| !! | CACTGCTTTGAAAGCAGAGA+AGG | - | chr4.1:54378641-54378660 | MS.gene95744:CDS | 45.0% |
| !! | TATGGAAGCGTTGCAGTCAT+GGG | - | chr4.1:54379805-54379824 | MS.gene95744:intron | 45.0% |
| !!! | CTGTTCGGGGTGTTTTTTTG+AGG | - | chr4.1:54377317-54377336 | MS.gene95744:intron | 45.0% |
| !! | ATTTATAATATGAAATAAAA+GGG | - | chr4.1:54378164-54378183 | MS.gene95744:intron | 5.0% |
| !! | TATTTATAATATGAAATAAA+AGG | - | chr4.1:54378163-54378182 | MS.gene95744:intron | 5.0% |
| !!! | AATTTATTTTCTTTTATTTT+GGG | - | chr4.1:54377939-54377958 | MS.gene95744:intron | 5.0% |
| !!! | TAATTTATTTTCTTTTATTT+TGG | - | chr4.1:54377938-54377957 | MS.gene95744:intron | 5.0% |
| AAAATCAGAACCACCCCACC+AGG | + | chr4.1:54378323-54378342 | None:intergenic | 50.0% | |
| ACAAGCTGGTTGGATGGGAT+TGG | - | chr4.1:54378565-54378584 | MS.gene95744:intron | 50.0% | |
| ACATTCAATACCCCCAGCTG+CGG | + | chr4.1:54376731-54376750 | None:intergenic | 50.0% | |
| ACTCTGTTGTCAATGCAGCG+CGG | - | chr4.1:54377992-54378011 | MS.gene95744:intron | 50.0% | |
| GCAGGGATTAATGTGATGGC+TGG | - | chr4.1:54378509-54378528 | MS.gene95744:intron | 50.0% | |
| GCGCGAGAAACTCATATGGT+GGG | - | chr4.1:54377114-54377133 | MS.gene95744:CDS | 50.0% | |
| GGATTTCTCTCCTTTGGCGA+TGG | - | chr4.1:54379826-54379845 | MS.gene95744:intron | 50.0% | |
| GGCAAACCCAATAATTGCCG+CGG | - | chr4.1:54378013-54378032 | MS.gene95744:intron | 50.0% | |
| GGTCAAGTGGTGAATTGGAG+TGG | - | chr4.1:54379555-54379574 | MS.gene95744:intron | 50.0% | |
| GTACTACTCAATCCACGTGG+TGG | - | chr4.1:54377656-54377675 | MS.gene95744:CDS | 50.0% | |
| TAAGCAGTAAACCGCAGCTG+GGG | - | chr4.1:54376717-54376736 | MS.gene95744:CDS | 50.0% | |
| TTGGAAGCAAATGCACCTGC+TGG | + | chr4.1:54379880-54379899 | None:intergenic | 50.0% | |
| ! | AGACAAAGTGCCATCGCCAA+AGG | + | chr4.1:54379839-54379858 | None:intergenic | 50.0% |
| ! | TGGGGCCTTAAGCTTGCTTA+AGG | - | chr4.1:54377169-54377188 | MS.gene95744:intron | 50.0% |
| AAGCAGTAAACCGCAGCTGG+GGG | - | chr4.1:54376718-54376737 | MS.gene95744:CDS | 55.0% | |
| ACCCAATAATTGCCGCGGTG+CGG | - | chr4.1:54378018-54378037 | MS.gene95744:intron | 55.0% | |
| CATCTCAGCTCAGCTCAGTC+AGG | + | chr4.1:54376810-54376829 | None:intergenic | 55.0% | |
| CGAAACTTTCTCCCACCACG+TGG | + | chr4.1:54377671-54377690 | None:intergenic | 55.0% | |
| CGCGCGAGAAACTCATATGG+TGG | - | chr4.1:54377113-54377132 | MS.gene95744:CDS | 55.0% | |
| CTCCGCTCCATTATAGCGGT+CGG | - | chr4.1:54378347-54378366 | MS.gene95744:intron | 55.0% | |
| CTCGCACGTCCTATGCAGTT+TGG | - | chr4.1:54377006-54377025 | MS.gene95744:CDS | 55.0% | |
| CTGACTGAGCTGAGCTGAGA+TGG | - | chr4.1:54376808-54376827 | MS.gene95744:CDS | 55.0% | |
| GAAGTGGAAAGCGGCCAAAG+CGG | + | chr4.1:54378262-54378281 | None:intergenic | 55.0% | |
| TCCGCTCCGCTCCATTATAG+CGG | - | chr4.1:54378343-54378362 | MS.gene95744:intron | 55.0% | |
| TTCTCTGTCGGGACGACTGT+TGG | - | chr4.1:54379519-54379538 | MS.gene95744:intron | 55.0% | |
| ! | ACCGCTATAATGGAGCGGAG+CGG | + | chr4.1:54378347-54378366 | None:intergenic | 55.0% |
| ! | ACTTCTGATACGTGCCGACG+CGG | - | chr4.1:54378277-54378296 | MS.gene95744:intron | 55.0% |
| ! | GAGCGTAGCGGGAGCTATTT+CGG | - | chr4.1:54378048-54378067 | MS.gene95744:intron | 55.0% |
| AGTTTCTCGCGCGCCCTGTT+CGG | + | chr4.1:54377106-54377125 | None:intergenic | 60.0% | |
| CCCAATAATTGCCGCGGTGC+GGG | - | chr4.1:54378019-54378038 | MS.gene95744:intron | 60.0% | |
| CCCGCACCGCGGCAATTATT+GGG | + | chr4.1:54378022-54378041 | None:intergenic | 60.0% | |
| CTCCATTATAGCGGTCGGCG+CGG | - | chr4.1:54378352-54378371 | MS.gene95744:intron | 60.0% | |
| GGGCGCGCGAGAAACTCATA+TGG | - | chr4.1:54377110-54377129 | MS.gene95744:CDS | 60.0% | |
| TCCCGCACCGCGGCAATTAT+TGG | + | chr4.1:54378023-54378042 | None:intergenic | 60.0% | |
| ! | CGCCGACCGCTATAATGGAG+CGG | + | chr4.1:54378352-54378371 | None:intergenic | 60.0% |
| ! | CGGGAGCTATTTCGGTGGTG+CGG | - | chr4.1:54378056-54378075 | MS.gene95744:intron | 60.0% |
| ! | CGTAGCGGGAGCTATTTCGG+TGG | - | chr4.1:54378051-54378070 | MS.gene95744:intron | 60.0% |
| ! | GCGTCGGCACGTATCAGAAG+TGG | + | chr4.1:54378278-54378297 | None:intergenic | 60.0% |
| !!! | GCGGCCGCTTTTGACAACAG+AGG | - | chr4.1:54378371-54378390 | MS.gene95744:intron | 60.0% |
| TAATTGCCGCGGTGCGGGAG+CGG | - | chr4.1:54378024-54378043 | MS.gene95744:intron | 65.0% | |
| AATTGCCGCGGTGCGGGAGC+GGG | - | chr4.1:54378025-54378044 | MS.gene95744:intron | 70.0% | |
| CCGACGCGGTCTGACACTCG+CGG | - | chr4.1:54378291-54378310 | MS.gene95744:intron | 70.0% | |
| CCGCGAGTGTCAGACCGCGT+CGG | + | chr4.1:54378294-54378313 | None:intergenic | 70.0% | |
| CGGTCTGACACTCGCGGACG+CGG | - | chr4.1:54378297-54378316 | MS.gene95744:intron | 70.0% | |
| ! | GGCCGCGCCGACCGCTATAA+TGG | + | chr4.1:54378357-54378376 | None:intergenic | 70.0% |
| ACTCGCGGACGCGGCCTGGT+GGG | - | chr4.1:54378306-54378325 | MS.gene95744:intron | 75.0% | |
| ATTGCCGCGGTGCGGGAGCG+GGG | - | chr4.1:54378026-54378045 | MS.gene95744:intron | 75.0% | |
| TGACACTCGCGGACGCGGCC+TGG | - | chr4.1:54378302-54378321 | MS.gene95744:intron | 75.0% | |
| ! | TGCGGGAGCGGGGAGCGTAG+CGG | - | chr4.1:54378036-54378055 | MS.gene95744:intron | 75.0% |
| ! | CACTCGCGGACGCGGCCTGG+TGG | - | chr4.1:54378305-54378324 | MS.gene95744:intron | 80.0% |
| ! | CTCGCGGACGCGGCCTGGTG+GGG | - | chr4.1:54378307-54378326 | MS.gene95744:intron | 80.0% |
| !! | GCGGGAGCGGGGAGCGTAGC+GGG | - | chr4.1:54378037-54378056 | MS.gene95744:intron | 80.0% |
| ! | CGCTCCCCGCTCCCGCACCG+CGG | + | chr4.1:54378033-54378052 | None:intergenic | 85.0% |
| ! | GCGGACGCGGCCTGGTGGGG+TGG | - | chr4.1:54378310-54378329 | MS.gene95744:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 54376350 | 54379994 | 54376350 | ID=MS.gene95744 |
| chr4.1 | mRNA | 54376350 | 54379994 | 54376350 | ID=MS.gene95744.t1;Parent=MS.gene95744 |
| chr4.1 | exon | 54379834 | 54379994 | 54379834 | ID=MS.gene95744.t1.exon1;Parent=MS.gene95744.t1 |
| chr4.1 | CDS | 54379834 | 54379994 | 54379834 | ID=cds.MS.gene95744.t1;Parent=MS.gene95744.t1 |
| chr4.1 | exon | 54378587 | 54378837 | 54378587 | ID=MS.gene95744.t1.exon2;Parent=MS.gene95744.t1 |
| chr4.1 | CDS | 54378587 | 54378837 | 54378587 | ID=cds.MS.gene95744.t1;Parent=MS.gene95744.t1 |
| chr4.1 | exon | 54377617 | 54377831 | 54377617 | ID=MS.gene95744.t1.exon3;Parent=MS.gene95744.t1 |
| chr4.1 | CDS | 54377617 | 54377831 | 54377617 | ID=cds.MS.gene95744.t1;Parent=MS.gene95744.t1 |
| chr4.1 | exon | 54377230 | 54377253 | 54377230 | ID=MS.gene95744.t1.exon4;Parent=MS.gene95744.t1 |
| chr4.1 | CDS | 54377230 | 54377253 | 54377230 | ID=cds.MS.gene95744.t1;Parent=MS.gene95744.t1 |
| chr4.1 | exon | 54376954 | 54377134 | 54376954 | ID=MS.gene95744.t1.exon5;Parent=MS.gene95744.t1 |
| chr4.1 | CDS | 54376954 | 54377134 | 54376954 | ID=cds.MS.gene95744.t1;Parent=MS.gene95744.t1 |
| chr4.1 | exon | 54376653 | 54376866 | 54376653 | ID=MS.gene95744.t1.exon6;Parent=MS.gene95744.t1 |
| chr4.1 | CDS | 54376653 | 54376866 | 54376653 | ID=cds.MS.gene95744.t1;Parent=MS.gene95744.t1 |
| chr4.1 | exon | 54376426 | 54376561 | 54376426 | ID=MS.gene95744.t1.exon7;Parent=MS.gene95744.t1 |
| chr4.1 | CDS | 54376426 | 54376561 | 54376426 | ID=cds.MS.gene95744.t1;Parent=MS.gene95744.t1 |
| chr4.1 | exon | 54376350 | 54376382 | 54376350 | ID=MS.gene95744.t1.exon8;Parent=MS.gene95744.t1 |
| chr4.1 | CDS | 54376350 | 54376382 | 54376350 | ID=cds.MS.gene95744.t1;Parent=MS.gene95744.t1 |
| Gene Sequence |
| Protein sequence |
