Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95784.t1 | XP_013469813.1 | 73.7 | 205 | 47 | 1 | 1 | 205 | 20 | 217 | 6.70E-48 | 200.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95784.t1 | A0A072VQE2 | 73.7 | 205 | 47 | 1 | 1 | 205 | 20 | 217 | 4.8e-48 | 200.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053287 | MS.gene95784 | 0.919054 | 7.26E-87 | -1.69E-46 |
MS.gene053288 | MS.gene95784 | 0.919017 | 7.61E-87 | -1.69E-46 |
MS.gene053289 | MS.gene95784 | 0.91926 | 5.62E-87 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95784.t1 | MTR_1g103420 | 95.122 | 205 | 3 | 1 | 1 | 205 | 20 | 217 | 4.24e-130 | 365 |
MS.gene95784.t1 | MTR_5g006940 | 59.512 | 205 | 71 | 5 | 1 | 205 | 20 | 212 | 5.20e-63 | 194 |
MS.gene95784.t1 | MTR_1g071720 | 49.624 | 133 | 62 | 5 | 8 | 137 | 27 | 157 | 1.29e-31 | 114 |
MS.gene95784.t1 | MTR_1g071720 | 56.190 | 105 | 42 | 4 | 8 | 109 | 27 | 130 | 1.68e-31 | 113 |
MS.gene95784.t1 | MTR_7g095250 | 48.544 | 103 | 46 | 3 | 18 | 113 | 2 | 104 | 7.93e-23 | 90.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95784.t1 | AT1G05450 | 60.993 | 141 | 48 | 3 | 7 | 147 | 27 | 160 | 2.21e-46 | 152 |
MS.gene95784.t1 | AT3G22620 | 47.692 | 195 | 80 | 6 | 13 | 205 | 29 | 203 | 2.09e-41 | 139 |
MS.gene95784.t1 | AT2G48140 | 50.331 | 151 | 63 | 6 | 1 | 140 | 15 | 164 | 5.15e-35 | 123 |
MS.gene95784.t1 | AT2G48140 | 57.009 | 107 | 44 | 2 | 1 | 106 | 15 | 120 | 2.56e-34 | 119 |
Find 67 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACTCTCTTCACACCTTGTA+TGG | 0.248146 | 1.1:+74255883 | MS.gene95784:CDS |
AATCCATGCCACTACTTGTT+AGG | 0.277189 | 1.1:-74255973 | None:intergenic |
AAGAGAGTGCTTATTGTAGA+AGG | 0.288971 | 1.1:-74255869 | None:intergenic |
ATAGCTAAGGTTCTATTGAT+TGG | 0.350447 | 1.1:-74256037 | None:intergenic |
CTTACAGGTAGTAGTGCTAA+TGG | 0.358055 | 1.1:+74255911 | MS.gene95784:CDS |
GGAGATGAAGTTGGTGAAGC+TGG | 0.379930 | 1.1:-74256720 | None:intergenic |
GTCATTAATATTGTCATGGC+TGG | 0.381229 | 1.1:+74255812 | None:intergenic |
CCATCGCCCTCGGTGAATTC+CGG | 0.383644 | 1.1:+74256786 | MS.gene95784:CDS |
CTTCCAGTTGTCGATGTAGA+TGG | 0.386358 | 1.1:-74256813 | None:intergenic |
TACTGTTCTATTGATTGCAC+TGG | 0.398561 | 1.1:+74256890 | MS.gene95784:CDS |
TGCTAATAACCTTGAGGACT+AGG | 0.423773 | 1.1:-74256574 | None:intergenic |
CTTATTGTAGAAGGGTTACA+TGG | 0.446986 | 1.1:-74255860 | None:intergenic |
TCACCTGCATCTTCTCCCTC+AGG | 0.449806 | 1.1:+74256538 | MS.gene95784:CDS |
ATCCATGCCACTACTTGTTA+GGG | 0.450316 | 1.1:-74255972 | None:intergenic |
TGGGGTGTTGATTTGTGCAT+TGG | 0.461296 | 1.1:-74255840 | None:intergenic |
TGAGACATTGTAAGATGTAA+TGG | 0.469321 | 1.1:-74256865 | None:intergenic |
GCTAATAACCTTGAGGACTA+GGG | 0.472496 | 1.1:-74256573 | None:intergenic |
TTTGACTCCGCCATCGCCCT+CGG | 0.482556 | 1.1:+74256776 | MS.gene95784:CDS |
TTCACCAACTTCATCTCCTC+TGG | 0.485231 | 1.1:+74256725 | MS.gene95784:CDS |
CCTCGTGCTTGTAACATGCC+TGG | 0.487865 | 1.1:+74256067 | MS.gene95784:CDS |
ATTCCATCTACATCGACAAC+TGG | 0.490256 | 1.1:+74256810 | MS.gene95784:CDS |
GCTTCACCACTTCCTGCTCC+TGG | 0.495227 | 1.1:+74256235 | MS.gene95784:CDS |
GAGATGAAGTTGGTGAAGCT+GGG | 0.504474 | 1.1:-74256719 | None:intergenic |
GCATTACCAGGAGCAGGAAG+TGG | 0.522233 | 1.1:-74256241 | None:intergenic |
AGAGAGTGCTTATTGTAGAA+GGG | 0.525567 | 1.1:-74255868 | None:intergenic |
AATCCTGAGGGAGAAGATGC+AGG | 0.533311 | 1.1:-74256541 | None:intergenic |
AGCAGGAAGTGGTGAAGCTG+AGG | 0.535400 | 1.1:-74256230 | None:intergenic |
CCGGAATTCACCGAGGGCGA+TGG | 0.539092 | 1.1:-74256786 | None:intergenic |
ATTCCAACCCCTAGTCCTCA+AGG | 0.540237 | 1.1:+74256565 | MS.gene95784:CDS |
ACTCTCTTCACACCTTGTAT+GGG | 0.540459 | 1.1:+74255884 | MS.gene95784:CDS |
AATTTGGCATTACCAGGAGC+AGG | 0.546347 | 1.1:-74256247 | None:intergenic |
TTCACAGGTCCTGTGGCTCT+AGG | 0.546401 | 1.1:+74256505 | MS.gene95784:intron |
TAACCTTGAGGACTAGGGGT+TGG | 0.546635 | 1.1:-74256568 | None:intergenic |
ATGTATATTCACAGGTCCTG+TGG | 0.548141 | 1.1:+74256498 | MS.gene95784:intron |
ATCCCTAACAAGTAGTGGCA+TGG | 0.551127 | 1.1:+74255970 | MS.gene95784:CDS |
CTTAAATCCCTAACAAGTAG+TGG | 0.551269 | 1.1:+74255965 | MS.gene95784:CDS |
TGTCGATGTAGATGGAATAC+CGG | 0.553646 | 1.1:-74256805 | None:intergenic |
TGAGATGGTCCTAGAGCCAC+AGG | 0.556902 | 1.1:-74256514 | None:intergenic |
ACTGTTCTATTGATTGCACT+GGG | 0.566423 | 1.1:+74256891 | MS.gene95784:CDS |
CCTGTAAGAAAACCCATACA+AGG | 0.567820 | 1.1:-74255896 | None:intergenic |
GGAACATTTGTGTCTTGTTG+TGG | 0.568188 | 1.1:-74256750 | None:intergenic |
TAAGATGTAATGGCAGATGA+TGG | 0.568483 | 1.1:-74256855 | None:intergenic |
TTGCATTGAACTGGAACACC+AGG | 0.568933 | 1.1:-74256085 | None:intergenic |
GGCGATGGCGGAGTCAAAAG+AGG | 0.572662 | 1.1:-74256771 | None:intergenic |
AAGAGCACCGCAACATTCAG+TGG | 0.581316 | 1.1:-74255945 | None:intergenic |
AGGGAACACTAGCAGTTACA+AGG | 0.586483 | 1.1:-74256006 | None:intergenic |
AGTGCAATCAATAGAACAGT+AGG | 0.586789 | 1.1:-74256888 | None:intergenic |
GTGTCTTGTTGTGGTGCCAG+AGG | 0.590812 | 1.1:-74256741 | None:intergenic |
GCACCGCAACATTCAGTGGT+TGG | 0.593515 | 1.1:-74255941 | None:intergenic |
TCTACATCGACAACTGGAAG+CGG | 0.603015 | 1.1:+74256816 | MS.gene95784:CDS |
GAAGATGCAGGTGAATGAGA+TGG | 0.607870 | 1.1:-74256529 | None:intergenic |
GAATTCACCGAGGGCGATGG+CGG | 0.615597 | 1.1:-74256783 | None:intergenic |
GGTGTTCCAGTTCAATGCAA+AGG | 0.630148 | 1.1:+74256088 | MS.gene95784:CDS |
CCAGGCATGTTACAAGCACG+AGG | 0.631598 | 1.1:-74256067 | None:intergenic |
ACGAGGGAGAGAGATAGCTA+AGG | 0.635982 | 1.1:-74256050 | None:intergenic |
CTAATAACCTTGAGGACTAG+GGG | 0.642081 | 1.1:-74256572 | None:intergenic |
TCACCAACCACTGAATGTTG+CGG | 0.642405 | 1.1:+74255938 | MS.gene95784:CDS |
TTATTGTAGAAGGGTTACAT+GGG | 0.644859 | 1.1:-74255859 | None:intergenic |
GCAACATTCAGTGGTTGGTG+AGG | 0.651267 | 1.1:-74255936 | None:intergenic |
GGGGTTGGAATAAATCCTGA+GGG | 0.662198 | 1.1:-74256553 | None:intergenic |
AGGGGTTGGAATAAATCCTG+AGG | 0.672890 | 1.1:-74256554 | None:intergenic |
GGTGCCAGAGGAGATGAAGT+TGG | 0.674504 | 1.1:-74256729 | None:intergenic |
GGAATACCGGAATTCACCGA+GGG | 0.686162 | 1.1:-74256792 | None:intergenic |
TATTGTAGAAGGGTTACATG+GGG | 0.692481 | 1.1:-74255858 | None:intergenic |
TGGTGAAGCTGGGATGTCAG+AGG | 0.694095 | 1.1:-74256709 | None:intergenic |
TGGAATACCGGAATTCACCG+AGG | 0.697163 | 1.1:-74256793 | None:intergenic |
CAGGCATGTTACAAGCACGA+GGG | 0.748196 | 1.1:-74256066 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTATTGAAATTGAAATT+TGG | - | chr1.1:74256266-74256285 | None:intergenic | 10.0% |
!! | CATTATTAAGATTAATTCAA+AGG | - | chr1.1:74256472-74256491 | None:intergenic | 15.0% |
!!! | GTTAGAAAATATTTTTGTTA+GGG | - | chr1.1:74256324-74256343 | None:intergenic | 15.0% |
!!! | TGTTAGAAAATATTTTTGTT+AGG | - | chr1.1:74256325-74256344 | None:intergenic | 15.0% |
! | TCAAAGAAAAATGTAAGAGT+TGG | - | chr1.1:74256682-74256701 | None:intergenic | 25.0% |
! | TCAAAGGAAAAATAGTTTAG+AGG | - | chr1.1:74256456-74256475 | None:intergenic | 25.0% |
!! | TTTTGTTAGGGATTATAGAA+GGG | - | chr1.1:74256312-74256331 | None:intergenic | 25.0% |
!! | TTTTTGTTAGGGATTATAGA+AGG | - | chr1.1:74256313-74256332 | None:intergenic | 25.0% |
!!! | CTATTGATTGGAATTTTGAA+GGG | - | chr1.1:74256028-74256047 | None:intergenic | 25.0% |
!!! | TCTATTGATTGGAATTTTGA+AGG | - | chr1.1:74256029-74256048 | None:intergenic | 25.0% |
!!! | TGATTTTGATGTATATTCAC+AGG | + | chr1.1:74256490-74256509 | MS.gene95784:intron | 25.0% |
AATTGAAATTTGGCATTACC+AGG | - | chr1.1:74256256-74256275 | None:intergenic | 30.0% | |
ATAGCTAAGGTTCTATTGAT+TGG | - | chr1.1:74256040-74256059 | None:intergenic | 30.0% | |
CTATCATCTAGTAACATTGT+AGG | + | chr1.1:74256423-74256442 | MS.gene95784:intron | 30.0% | |
TGAGACATTGTAAGATGTAA+TGG | - | chr1.1:74256868-74256887 | None:intergenic | 30.0% | |
TTATTGTAGAAGGGTTACAT+GGG | - | chr1.1:74255862-74255881 | None:intergenic | 30.0% | |
! | TTTTTACCTTTGCATTGAAC+TGG | - | chr1.1:74256097-74256116 | None:intergenic | 30.0% |
AGTGCAATCAATAGAACAGT+AGG | - | chr1.1:74256891-74256910 | None:intergenic | 35.0% | |
CTTAAATCCCTAACAAGTAG+TGG | + | chr1.1:74255965-74255984 | MS.gene95784:CDS | 35.0% | |
CTTATTGTAGAAGGGTTACA+TGG | - | chr1.1:74255863-74255882 | None:intergenic | 35.0% | |
GTGTAATGCTAATAACCTTG+AGG | - | chr1.1:74256583-74256602 | None:intergenic | 35.0% | |
TAAGATGTAATGGCAGATGA+TGG | - | chr1.1:74256858-74256877 | None:intergenic | 35.0% | |
TATTGTAGAAGGGTTACATG+GGG | - | chr1.1:74255861-74255880 | None:intergenic | 35.0% | |
! | ACTGTTCTATTGATTGCACT+GGG | + | chr1.1:74256891-74256910 | MS.gene95784:CDS | 35.0% |
! | TACTGTTCTATTGATTGCAC+TGG | + | chr1.1:74256890-74256909 | MS.gene95784:CDS | 35.0% |
!! | AAGAGAGTGCTTATTGTAGA+AGG | - | chr1.1:74255872-74255891 | None:intergenic | 35.0% |
!! | AGAGAGTGCTTATTGTAGAA+GGG | - | chr1.1:74255871-74255890 | None:intergenic | 35.0% |
AATCCATGCCACTACTTGTT+AGG | - | chr1.1:74255976-74255995 | None:intergenic | 40.0% | |
ACTCTCTTCACACCTTGTAT+GGG | + | chr1.1:74255884-74255903 | MS.gene95784:CDS | 40.0% | |
ATGTATATTCACAGGTCCTG+TGG | + | chr1.1:74256498-74256517 | MS.gene95784:intron | 40.0% | |
ATTCCATCTACATCGACAAC+TGG | + | chr1.1:74256810-74256829 | MS.gene95784:CDS | 40.0% | |
CCTGTAAGAAAACCCATACA+AGG | - | chr1.1:74255899-74255918 | None:intergenic | 40.0% | |
CTAATAACCTTGAGGACTAG+GGG | - | chr1.1:74256575-74256594 | None:intergenic | 40.0% | |
CTTACAGGTAGTAGTGCTAA+TGG | + | chr1.1:74255911-74255930 | MS.gene95784:CDS | 40.0% | |
GCTAATAACCTTGAGGACTA+GGG | - | chr1.1:74256576-74256595 | None:intergenic | 40.0% | |
TGCTAATAACCTTGAGGACT+AGG | - | chr1.1:74256577-74256596 | None:intergenic | 40.0% | |
TGTCGATGTAGATGGAATAC+CGG | - | chr1.1:74256808-74256827 | None:intergenic | 40.0% | |
! | ATCCATGCCACTACTTGTTA+GGG | - | chr1.1:74255975-74255994 | None:intergenic | 40.0% |
! | CCTTGTATGGGTTTTCTTAC+AGG | + | chr1.1:74255896-74255915 | MS.gene95784:CDS | 40.0% |
! | GGAACATTTGTGTCTTGTTG+TGG | - | chr1.1:74256753-74256772 | None:intergenic | 40.0% |
AATTTGGCATTACCAGGAGC+AGG | - | chr1.1:74256250-74256269 | None:intergenic | 45.0% | |
AGGGAACACTAGCAGTTACA+AGG | - | chr1.1:74256009-74256028 | None:intergenic | 45.0% | |
AGGGGTTGGAATAAATCCTG+AGG | - | chr1.1:74256557-74256576 | None:intergenic | 45.0% | |
ATCCCTAACAAGTAGTGGCA+TGG | + | chr1.1:74255970-74255989 | MS.gene95784:CDS | 45.0% | |
CACTCTCTTCACACCTTGTA+TGG | + | chr1.1:74255883-74255902 | MS.gene95784:CDS | 45.0% | |
CTTCCAGTTGTCGATGTAGA+TGG | - | chr1.1:74256816-74256835 | None:intergenic | 45.0% | |
GAAGATGCAGGTGAATGAGA+TGG | - | chr1.1:74256532-74256551 | None:intergenic | 45.0% | |
GGGGTTGGAATAAATCCTGA+GGG | - | chr1.1:74256556-74256575 | None:intergenic | 45.0% | |
GGTGTTCCAGTTCAATGCAA+AGG | + | chr1.1:74256088-74256107 | MS.gene95784:CDS | 45.0% | |
TCACCAACCACTGAATGTTG+CGG | + | chr1.1:74255938-74255957 | MS.gene95784:CDS | 45.0% | |
TCTACATCGACAACTGGAAG+CGG | + | chr1.1:74256816-74256835 | MS.gene95784:CDS | 45.0% | |
TTCACCAACTTCATCTCCTC+TGG | + | chr1.1:74256725-74256744 | MS.gene95784:CDS | 45.0% | |
TTGCATTGAACTGGAACACC+AGG | - | chr1.1:74256088-74256107 | None:intergenic | 45.0% | |
!! | GAGATGAAGTTGGTGAAGCT+GGG | - | chr1.1:74256722-74256741 | None:intergenic | 45.0% |
!! | TGGGGTGTTGATTTGTGCAT+TGG | - | chr1.1:74255843-74255862 | None:intergenic | 45.0% |
AATCCTGAGGGAGAAGATGC+AGG | - | chr1.1:74256544-74256563 | None:intergenic | 50.0% | |
ACGAGGGAGAGAGATAGCTA+AGG | - | chr1.1:74256053-74256072 | None:intergenic | 50.0% | |
ATTCCAACCCCTAGTCCTCA+AGG | + | chr1.1:74256565-74256584 | MS.gene95784:CDS | 50.0% | |
CAGGCATGTTACAAGCACGA+GGG | - | chr1.1:74256069-74256088 | None:intergenic | 50.0% | |
GGAATACCGGAATTCACCGA+GGG | - | chr1.1:74256795-74256814 | None:intergenic | 50.0% | |
TAACCTTGAGGACTAGGGGT+TGG | - | chr1.1:74256571-74256590 | None:intergenic | 50.0% | |
TGGAATACCGGAATTCACCG+AGG | - | chr1.1:74256796-74256815 | None:intergenic | 50.0% | |
! | GCAACATTCAGTGGTTGGTG+AGG | - | chr1.1:74255939-74255958 | None:intergenic | 50.0% |
!! | AAGAGCACCGCAACATTCAG+TGG | - | chr1.1:74255948-74255967 | None:intergenic | 50.0% |
!! | GGAGATGAAGTTGGTGAAGC+TGG | - | chr1.1:74256723-74256742 | None:intergenic | 50.0% |
AGCAGGAAGTGGTGAAGCTG+AGG | - | chr1.1:74256233-74256252 | None:intergenic | 55.0% | |
CCAGGCATGTTACAAGCACG+AGG | - | chr1.1:74256070-74256089 | None:intergenic | 55.0% | |
CCTCGTGCTTGTAACATGCC+TGG | + | chr1.1:74256067-74256086 | MS.gene95784:CDS | 55.0% | |
GCACCGCAACATTCAGTGGT+TGG | - | chr1.1:74255944-74255963 | None:intergenic | 55.0% | |
GCATTACCAGGAGCAGGAAG+TGG | - | chr1.1:74256244-74256263 | None:intergenic | 55.0% | |
GGTGCCAGAGGAGATGAAGT+TGG | - | chr1.1:74256732-74256751 | None:intergenic | 55.0% | |
TCACCTGCATCTTCTCCCTC+AGG | + | chr1.1:74256538-74256557 | MS.gene95784:CDS | 55.0% | |
TGAGATGGTCCTAGAGCCAC+AGG | - | chr1.1:74256517-74256536 | None:intergenic | 55.0% | |
TGGTGAAGCTGGGATGTCAG+AGG | - | chr1.1:74256712-74256731 | None:intergenic | 55.0% | |
TTCACAGGTCCTGTGGCTCT+AGG | + | chr1.1:74256505-74256524 | MS.gene95784:intron | 55.0% | |
! | GTGTCTTGTTGTGGTGCCAG+AGG | - | chr1.1:74256744-74256763 | None:intergenic | 55.0% |
CCATCGCCCTCGGTGAATTC+CGG | + | chr1.1:74256786-74256805 | MS.gene95784:CDS | 60.0% | |
GAATTCACCGAGGGCGATGG+CGG | - | chr1.1:74256786-74256805 | None:intergenic | 60.0% | |
GCTTCACCACTTCCTGCTCC+TGG | + | chr1.1:74256235-74256254 | MS.gene95784:CDS | 60.0% | |
TTTGACTCCGCCATCGCCCT+CGG | + | chr1.1:74256776-74256795 | MS.gene95784:CDS | 60.0% | |
!! | GGCGATGGCGGAGTCAAAAG+AGG | - | chr1.1:74256774-74256793 | None:intergenic | 60.0% |
CCGGAATTCACCGAGGGCGA+TGG | - | chr1.1:74256789-74256808 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 74255827 | 74256938 | 74255827 | ID=MS.gene95784 |
chr1.1 | mRNA | 74255827 | 74256938 | 74255827 | ID=MS.gene95784.t1;Parent=MS.gene95784 |
chr1.1 | exon | 74255827 | 74256109 | 74255827 | ID=MS.gene95784.t1.exon1;Parent=MS.gene95784.t1 |
chr1.1 | CDS | 74255827 | 74256109 | 74255827 | ID=cds.MS.gene95784.t1;Parent=MS.gene95784.t1 |
chr1.1 | exon | 74256230 | 74256256 | 74256230 | ID=MS.gene95784.t1.exon2;Parent=MS.gene95784.t1 |
chr1.1 | CDS | 74256230 | 74256256 | 74256230 | ID=cds.MS.gene95784.t1;Parent=MS.gene95784.t1 |
chr1.1 | exon | 74256512 | 74256586 | 74256512 | ID=MS.gene95784.t1.exon3;Parent=MS.gene95784.t1 |
chr1.1 | CDS | 74256512 | 74256586 | 74256512 | ID=cds.MS.gene95784.t1;Parent=MS.gene95784.t1 |
chr1.1 | exon | 74256706 | 74256938 | 74256706 | ID=MS.gene95784.t1.exon4;Parent=MS.gene95784.t1 |
chr1.1 | CDS | 74256706 | 74256938 | 74256706 | ID=cds.MS.gene95784.t1;Parent=MS.gene95784.t1 |
Gene Sequence |
Protein sequence |