Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95850.t1 | XP_003630990.1 | 96.5 | 311 | 11 | 0 | 1 | 311 | 1 | 311 | 1.50E-155 | 558.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95850.t1 | Q9LFD5 | 44.7 | 262 | 138 | 3 | 29 | 290 | 3 | 257 | 1.7e-43 | 177.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95850.t1 | G7LBH9 | 96.5 | 311 | 11 | 0 | 1 | 311 | 1 | 311 | 1.1e-155 | 558.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene021689 | MS.gene95850 | PPI |
| MS.gene79606 | MS.gene95850 | PPI |
| MS.gene92820 | MS.gene95850 | PPI |
| MS.gene043248 | MS.gene95850 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95850.t1 | MTR_8g105910 | 96.463 | 311 | 11 | 0 | 1 | 311 | 1 | 311 | 0.0 | 606 |
| MS.gene95850.t1 | MTR_1g032860 | 66.775 | 307 | 100 | 2 | 1 | 307 | 1 | 305 | 4.34e-142 | 403 |
| MS.gene95850.t1 | MTR_8g066460 | 53.333 | 270 | 116 | 2 | 31 | 290 | 3 | 272 | 2.80e-93 | 278 |
| MS.gene95850.t1 | MTR_8g066460 | 53.333 | 270 | 116 | 2 | 31 | 290 | 19 | 288 | 6.28e-93 | 278 |
| MS.gene95850.t1 | MTR_5g029640 | 58.607 | 244 | 97 | 1 | 31 | 270 | 3 | 246 | 5.82e-90 | 276 |
| MS.gene95850.t1 | MTR_5g029640 | 57.823 | 147 | 62 | 0 | 124 | 270 | 272 | 418 | 3.33e-46 | 162 |
| MS.gene95850.t1 | MTR_7g086080 | 40.964 | 249 | 129 | 2 | 32 | 262 | 4 | 252 | 1.41e-62 | 199 |
| MS.gene95850.t1 | MTR_5g039130 | 38.115 | 244 | 128 | 3 | 27 | 251 | 3 | 242 | 1.02e-45 | 155 |
| MS.gene95850.t1 | MTR_7g010100 | 34.818 | 247 | 129 | 6 | 33 | 251 | 7 | 249 | 2.16e-31 | 118 |
| MS.gene95850.t1 | MTR_5g038107 | 63.333 | 60 | 22 | 0 | 31 | 90 | 3 | 62 | 1.69e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95850.t1 | AT4G17720 | 57.037 | 270 | 102 | 5 | 33 | 295 | 5 | 267 | 5.22e-95 | 284 |
| MS.gene95850.t1 | AT1G67950 | 57.613 | 243 | 96 | 1 | 28 | 270 | 25 | 260 | 1.64e-94 | 281 |
| MS.gene95850.t1 | AT1G67950 | 57.613 | 243 | 96 | 1 | 28 | 270 | 26 | 261 | 2.37e-94 | 281 |
| MS.gene95850.t1 | AT1G67950 | 57.787 | 244 | 95 | 2 | 28 | 270 | 25 | 261 | 2.63e-93 | 278 |
| MS.gene95850.t1 | AT5G46870 | 57.500 | 240 | 92 | 1 | 33 | 262 | 5 | 244 | 3.17e-88 | 266 |
| MS.gene95850.t1 | AT5G46870 | 57.500 | 240 | 92 | 1 | 33 | 262 | 5 | 244 | 3.17e-88 | 266 |
| MS.gene95850.t1 | AT5G16840 | 54.741 | 232 | 102 | 2 | 29 | 260 | 3 | 231 | 3.82e-81 | 246 |
| MS.gene95850.t1 | AT5G16840 | 54.741 | 232 | 101 | 2 | 29 | 260 | 3 | 230 | 1.33e-80 | 245 |
| MS.gene95850.t1 | AT5G16840 | 54.783 | 230 | 100 | 2 | 31 | 260 | 3 | 228 | 5.42e-80 | 243 |
| MS.gene95850.t1 | AT1G67950 | 54.808 | 208 | 87 | 1 | 63 | 270 | 1 | 201 | 2.89e-73 | 225 |
| MS.gene95850.t1 | AT5G32450 | 44.400 | 250 | 120 | 2 | 32 | 262 | 5 | 254 | 3.83e-67 | 211 |
| MS.gene95850.t1 | AT1G14340 | 37.021 | 235 | 129 | 3 | 34 | 253 | 9 | 239 | 1.20e-41 | 145 |
| MS.gene95850.t1 | AT3G01210 | 33.478 | 230 | 125 | 5 | 35 | 241 | 9 | 233 | 3.00e-26 | 104 |
| MS.gene95850.t1 | AT3G01210 | 33.478 | 230 | 125 | 5 | 35 | 241 | 9 | 233 | 3.00e-26 | 104 |
Find 58 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAACCCCTTGATCTTTA+TGG | 0.131677 | 4.3:-1142265 | None:intergenic |
| TGCTCCCTGTGTATTCTTAA+AGG | 0.217148 | 4.3:-1143020 | None:intergenic |
| GGACTAAATGGTTGAGCTTC+AGG | 0.256983 | 4.3:-1143267 | None:intergenic |
| GAGACATTAATTGTCCAATT+TGG | 0.261504 | 4.3:-1142311 | None:intergenic |
| CCTGATTTAACAGGATCTTT+TGG | 0.271247 | 4.3:-1144099 | None:intergenic |
| AATCTACAATTACACCAAAT+TGG | 0.277160 | 4.3:+1142297 | MS.gene95850:CDS |
| TCAGGTGATGATAGTAGATT+TGG | 0.285077 | 4.3:+1144117 | MS.gene95850:CDS |
| CAGCAGCAGGAGTCTGCTTT+TGG | 0.298826 | 4.3:-1143570 | None:intergenic |
| ATGGCGTTCGTCAAAGGATT+TGG | 0.339452 | 4.3:-1143668 | None:intergenic |
| ATTTGGTGTAATTGTAGATT+GGG | 0.343560 | 4.3:-1142294 | None:intergenic |
| CTATCATCACCTGATTTAAC+AGG | 0.366026 | 4.3:-1144108 | None:intergenic |
| TAGGTGCTTACAGGACTAAA+TGG | 0.367374 | 4.3:-1143279 | None:intergenic |
| GCTTCCATCGACCGTAAAAT+CGG | 0.392626 | 4.3:+1143721 | MS.gene95850:CDS |
| CCAAAAGATCCTGTTAAATC+AGG | 0.398256 | 4.3:+1144099 | MS.gene95850:CDS |
| AATTTGGTGTAATTGTAGAT+TGG | 0.408821 | 4.3:-1142295 | None:intergenic |
| AAACTCTTTGATATCCTTCT+CGG | 0.411550 | 4.3:-1142816 | None:intergenic |
| TTGACTGATAAACTAAGTAT+TGG | 0.438409 | 4.3:+1143745 | MS.gene95850:CDS |
| GAGCAAAAGGCAAGTGATGC+TGG | 0.451069 | 4.3:+1143853 | MS.gene95850:CDS |
| AGCAATCCTTATGTATCAAC+CGG | 0.460676 | 4.3:+1143889 | MS.gene95850:CDS |
| TCAAATGGCGTGATGGTGAC+AGG | 0.461655 | 4.3:-1143228 | None:intergenic |
| CAGGTGATGATAGTAGATTT+GGG | 0.463823 | 4.3:+1144118 | MS.gene95850:CDS |
| TCAGCCTTCTTAACAGCAGC+AGG | 0.470780 | 4.3:-1143583 | None:intergenic |
| GACCATGGAGAAGGTCGAAA+TGG | 0.472925 | 4.3:+1143975 | MS.gene95850:CDS |
| GACTAAATGGTTGAGCTTCA+GGG | 0.476963 | 4.3:-1143266 | None:intergenic |
| ATGTATCAACCGGAGCTTCG+TGG | 0.477069 | 4.3:+1143899 | MS.gene95850:CDS |
| AAGAGATCATTTACAGTGAA+AGG | 0.479981 | 4.3:+1144013 | MS.gene95850:CDS |
| AACAAAACCTTTGGCAAGCA+TGG | 0.482332 | 4.3:-1143620 | None:intergenic |
| GACTCCTGCTGCTGTTAAGA+AGG | 0.488682 | 4.3:+1143579 | MS.gene95850:CDS |
| CCAGTGGACCATAAAGATCA+AGG | 0.496454 | 4.3:+1142257 | MS.gene95850:CDS |
| TTATGCTGTTGCTGAGCAAA+AGG | 0.504065 | 4.3:+1143840 | MS.gene95850:CDS |
| CCTTGATCTTTATGGTCCAC+TGG | 0.505164 | 4.3:-1142257 | None:intergenic |
| GACAGGAGAATTTGCTATGT+TGG | 0.511315 | 4.3:-1143211 | None:intergenic |
| TAAGTGATGGCGTTCGTCAA+AGG | 0.516029 | 4.3:-1143674 | None:intergenic |
| ACTAAATGGTTGAGCTTCAG+GGG | 0.517698 | 4.3:-1143265 | None:intergenic |
| GCTCGACACCCACGAAGCTC+CGG | 0.518595 | 4.3:-1143908 | None:intergenic |
| GAAGCTCCGGTTGATACATA+AGG | 0.526434 | 4.3:-1143895 | None:intergenic |
| GGCCATTTCGACCTTCTCCA+TGG | 0.533969 | 4.3:-1143977 | None:intergenic |
| TGTATCAACCGGAGCTTCGT+GGG | 0.542390 | 4.3:+1143900 | MS.gene95850:CDS |
| CACTCTGAGAAACCTTCAGT+TGG | 0.554582 | 4.3:+1144066 | MS.gene95850:CDS |
| AGACACAGCGGTGCTCTTGA+CGG | 0.555982 | 4.3:+1143042 | MS.gene95850:CDS |
| GACCTTCTCCATGGTCATTG+TGG | 0.556836 | 4.3:-1143968 | None:intergenic |
| GGAGAAGTACTTCCAACTGA+AGG | 0.564400 | 4.3:-1144078 | None:intergenic |
| TTATTATATGCAGGTTCCAG+TGG | 0.564713 | 4.3:+1142241 | MS.gene95850:intron |
| CAGTGGACCATAAAGATCAA+GGG | 0.577238 | 4.3:+1142258 | MS.gene95850:CDS |
| TTTGGTGTAATTGTAGATTG+GGG | 0.593002 | 4.3:-1142293 | None:intergenic |
| GGAGAAGGTCGAAATGGCCG+AGG | 0.599248 | 4.3:+1143981 | MS.gene95850:CDS |
| GTGAGCACCATGCTTGCCAA+AGG | 0.609575 | 4.3:+1143613 | MS.gene95850:CDS |
| AAGCATTTGAAATTAAGTGA+TGG | 0.611170 | 4.3:-1143687 | None:intergenic |
| ATCAATGACTGCGACCGAGA+AGG | 0.612115 | 4.3:+1142802 | MS.gene95850:CDS |
| GATCTCTTTCTTATCAACCT+CGG | 0.612294 | 4.3:-1143998 | None:intergenic |
| TGTTACCTTTAAGAATACAC+AGG | 0.630422 | 4.3:+1143015 | MS.gene95850:CDS |
| ACGGTCGATGGAAGCAACTG+TGG | 0.631720 | 4.3:-1143713 | None:intergenic |
| AACCACAATGACCATGGAGA+AGG | 0.639861 | 4.3:+1143966 | MS.gene95850:CDS |
| AGATGTAACCACAATGACCA+TGG | 0.653319 | 4.3:+1143960 | MS.gene95850:CDS |
| AGTGGACCATAAAGATCAAG+GGG | 0.658714 | 4.3:+1142259 | MS.gene95850:CDS |
| GTTACCTTTAAGAATACACA+GGG | 0.687476 | 4.3:+1143016 | MS.gene95850:CDS |
| CTAAATGGTTGAGCTTCAGG+GGG | 0.692728 | 4.3:-1143264 | None:intergenic |
| TACACAGGGAGCAGACACAG+CGG | 0.763107 | 4.3:+1143030 | MS.gene95850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATAAAGTAATATAAATA+TGG | + | chr4.3:1142003-1142022 | MS.gene95850:intron | 10.0% |
| !! | TATACATCTTATAAATTTAT+CGG | - | chr4.3:1143428-1143447 | None:intergenic | 10.0% |
| !! | TTATATATTCTATTTATCAA+TGG | - | chr4.3:1143109-1143128 | None:intergenic | 10.0% |
| !!! | CAGATTATTATTATTATTTT+TGG | + | chr4.3:1143147-1143166 | MS.gene95850:intron | 10.0% |
| !!! | TTTTTATGTTTTCCTATATA+TGG | + | chr4.3:1141812-1141831 | MS.gene95850:intron | 15.0% |
| !! | ATTAAAATGGAAGGAAAAAA+AGG | - | chr4.3:1142905-1142924 | None:intergenic | 20.0% |
| !! | ATTACAAATCATAGATTGAA+TGG | - | chr4.3:1141988-1142007 | None:intergenic | 20.0% |
| !! | TAATAACTAGATCCATATAT+AGG | - | chr4.3:1141827-1141846 | None:intergenic | 20.0% |
| !!! | AGAAGTTCATATTTTAATCA+AGG | - | chr4.3:1142167-1142186 | None:intergenic | 20.0% |
| !!! | AGCATTTTATTATTATATGC+AGG | + | chr4.3:1142232-1142251 | MS.gene95850:intron | 20.0% |
| ! | AATCTACAATTACACCAAAT+TGG | + | chr4.3:1142297-1142316 | MS.gene95850:CDS | 25.0% |
| ! | AGGTAAAAATGAATCAACTT+AGG | - | chr4.3:1142749-1142768 | None:intergenic | 25.0% |
| ! | ATAAATCCATAAATGCATAG+TGG | + | chr4.3:1142536-1142555 | MS.gene95850:intron | 25.0% |
| ! | ATCACAAATTGATGAATATC+AGG | + | chr4.3:1142092-1142111 | MS.gene95850:intron | 25.0% |
| ! | GAACAGATAAAAACTAACTT+AGG | - | chr4.3:1143301-1143320 | None:intergenic | 25.0% |
| ! | TAATTCGATACTGGTATTAT+AGG | - | chr4.3:1143330-1143349 | None:intergenic | 25.0% |
| ! | TCACAAATTGATGAATATCA+GGG | + | chr4.3:1142093-1142112 | MS.gene95850:intron | 25.0% |
| ! | TTCATCAATTTGTGATTTGA+TGG | - | chr4.3:1142088-1142107 | None:intergenic | 25.0% |
| ! | TTGACTGATAAACTAAGTAT+TGG | + | chr4.3:1143745-1143764 | MS.gene95850:CDS | 25.0% |
| !! | AAGCATTTGAAATTAAGTGA+TGG | - | chr4.3:1143690-1143709 | None:intergenic | 25.0% |
| !! | ATTTTCACAATTCACTTACA+TGG | + | chr4.3:1142953-1142972 | MS.gene95850:intron | 25.0% |
| !! | TTTTCCTAAAACAAAACCTT+TGG | - | chr4.3:1143632-1143651 | None:intergenic | 25.0% |
| !!! | AAAGGTTTTGTTTTAGGAAA+AGG | + | chr4.3:1143631-1143650 | MS.gene95850:CDS | 25.0% |
| !!! | AATTTGGTGTAATTGTAGAT+TGG | - | chr4.3:1142298-1142317 | None:intergenic | 25.0% |
| !!! | ATTTGGTGTAATTGTAGATT+GGG | - | chr4.3:1142297-1142316 | None:intergenic | 25.0% |
| AAACTCTTTGATATCCTTCT+CGG | - | chr4.3:1142819-1142838 | None:intergenic | 30.0% | |
| AAATATGGTGATCCCTAATA+AGG | + | chr4.3:1142018-1142037 | MS.gene95850:intron | 30.0% | |
| AAATGAAAAAGTGAGAGAGA+TGG | + | chr4.3:1143780-1143799 | MS.gene95850:CDS | 30.0% | |
| AAGAGATCATTTACAGTGAA+AGG | + | chr4.3:1144013-1144032 | MS.gene95850:CDS | 30.0% | |
| AATACCAACACATGACAATA+AGG | - | chr4.3:1142666-1142685 | None:intergenic | 30.0% | |
| AGAGATGGATGAAAAATTTC+AGG | + | chr4.3:1143795-1143814 | MS.gene95850:CDS | 30.0% | |
| AGCAATGACACTCATTAAAA+TGG | - | chr4.3:1142918-1142937 | None:intergenic | 30.0% | |
| ATATTTATATTGCAGTGTCC+AGG | - | chr4.3:1142439-1142458 | None:intergenic | 30.0% | |
| ATGACACTCATTAAAATGGA+AGG | - | chr4.3:1142914-1142933 | None:intergenic | 30.0% | |
| ATGCTTCTCTTTATAGTACA+GGG | + | chr4.3:1143186-1143205 | MS.gene95850:intron | 30.0% | |
| CTAGAGTGAAAACATGATAT+TGG | - | chr4.3:1142413-1142432 | None:intergenic | 30.0% | |
| GAGACATTAATTGTCCAATT+TGG | - | chr4.3:1142314-1142333 | None:intergenic | 30.0% | |
| GTATGACTCATTTATTTAGC+AGG | + | chr4.3:1143378-1143397 | MS.gene95850:intron | 30.0% | |
| TTATCTTAGCAGTAAAAGTG+TGG | + | chr4.3:1143347-1143366 | MS.gene95850:intron | 30.0% | |
| TTGAATCCACTATGCATTTA+TGG | - | chr4.3:1142545-1142564 | None:intergenic | 30.0% | |
| ! | AAAGAGTTTTTCTCATTCTC+TGG | + | chr4.3:1142830-1142849 | MS.gene95850:CDS | 30.0% |
| ! | ATAATTTTCAAATGGCGTGA+TGG | - | chr4.3:1143238-1143257 | None:intergenic | 30.0% |
| ! | GGAAGCTGATAATTTTCAAA+TGG | - | chr4.3:1143246-1143265 | None:intergenic | 30.0% |
| ! | GTTACCTTTAAGAATACACA+GGG | + | chr4.3:1143016-1143035 | MS.gene95850:CDS | 30.0% |
| ! | TGTTACCTTTAAGAATACAC+AGG | + | chr4.3:1143015-1143034 | MS.gene95850:CDS | 30.0% |
| ! | TTTGGTGTAATTGTAGATTG+GGG | - | chr4.3:1142296-1142315 | None:intergenic | 30.0% |
| !! | AATGCATAGTGGATTCAAAT+TGG | + | chr4.3:1142547-1142566 | MS.gene95850:intron | 30.0% |
| !! | AGTTGATTCATTTTTACCTC+TGG | + | chr4.3:1142750-1142769 | MS.gene95850:intron | 30.0% |
| !! | ATGCATAGTGGATTCAAATT+GGG | + | chr4.3:1142548-1142567 | MS.gene95850:intron | 30.0% |
| !! | TATCAGTCAAACCGATTTTA+CGG | - | chr4.3:1143735-1143754 | None:intergenic | 30.0% |
| !!! | ACTTACATGGAATTTTTTGC+AGG | + | chr4.3:1142966-1142985 | MS.gene95850:intron | 30.0% |
| !!! | CTTACATGGAATTTTTTGCA+GGG | + | chr4.3:1142967-1142986 | MS.gene95850:intron | 30.0% |
| !!! | TTGCTGATTTTAACTGCTTT+TGG | + | chr4.3:1142611-1142630 | MS.gene95850:intron | 30.0% |
| AAAAAAAGGATTGCATTGCG+AGG | - | chr4.3:1142891-1142910 | None:intergenic | 35.0% | |
| AAACTAACTTAGGTGCTTAC+AGG | - | chr4.3:1143291-1143310 | None:intergenic | 35.0% | |
| AGCAATCCTTATGTATCAAC+CGG | + | chr4.3:1143889-1143908 | MS.gene95850:CDS | 35.0% | |
| CACTACAATTACAAACACAG+TGG | - | chr4.3:1142119-1142138 | None:intergenic | 35.0% | |
| CAGGTGATGATAGTAGATTT+GGG | + | chr4.3:1144118-1144137 | MS.gene95850:CDS | 35.0% | |
| CATGCTTCTCTTTATAGTAC+AGG | + | chr4.3:1143185-1143204 | MS.gene95850:intron | 35.0% | |
| CCAAAAGATCCTGTTAAATC+AGG | + | chr4.3:1144099-1144118 | MS.gene95850:CDS | 35.0% | |
| CTATCATCACCTGATTTAAC+AGG | - | chr4.3:1144111-1144130 | None:intergenic | 35.0% | |
| CTGCTAAGATAATTCGATAC+TGG | - | chr4.3:1143339-1143358 | None:intergenic | 35.0% | |
| GATCTCTTTCTTATCAACCT+CGG | - | chr4.3:1144001-1144020 | None:intergenic | 35.0% | |
| GGTGCATGAAAATACATCAA+TGG | + | chr4.3:1142060-1142079 | MS.gene95850:intron | 35.0% | |
| TAACCTTTGATGTTGATCTC+AGG | + | chr4.3:1143546-1143565 | MS.gene95850:intron | 35.0% | |
| TCAGGTGATGATAGTAGATT+TGG | + | chr4.3:1144117-1144136 | MS.gene95850:CDS | 35.0% | |
| TTACCTCTGGCAGATAAAAA+CGG | + | chr4.3:1142763-1142782 | MS.gene95850:intron | 35.0% | |
| TTATTATATGCAGGTTCCAG+TGG | + | chr4.3:1142241-1142260 | MS.gene95850:intron | 35.0% | |
| ! | AGTTCTGATTATGTTGTAGC+AGG | - | chr4.3:1142467-1142486 | None:intergenic | 35.0% |
| ! | CCTGATTTAACAGGATCTTT+TGG | - | chr4.3:1144102-1144121 | None:intergenic | 35.0% |
| ! | TGATCCCTAATAAGGTTGAT+GGG | + | chr4.3:1142026-1142045 | MS.gene95850:intron | 35.0% |
| !!! | CTTGCCAAAGGTTTTGTTTT+AGG | + | chr4.3:1143625-1143644 | MS.gene95850:CDS | 35.0% |
| AACAAAACCTTTGGCAAGCA+TGG | - | chr4.3:1143623-1143642 | None:intergenic | 40.0% | |
| ACTAAATGGTTGAGCTTCAG+GGG | - | chr4.3:1143268-1143287 | None:intergenic | 40.0% | |
| AGATGTAACCACAATGACCA+TGG | + | chr4.3:1143960-1143979 | MS.gene95850:CDS | 40.0% | |
| AGTGGACCATAAAGATCAAG+GGG | + | chr4.3:1142259-1142278 | MS.gene95850:CDS | 40.0% | |
| CAGTGGACCATAAAGATCAA+GGG | + | chr4.3:1142258-1142277 | MS.gene95850:CDS | 40.0% | |
| CTGGCAGATAAAAACGGTTA+AGG | + | chr4.3:1142769-1142788 | MS.gene95850:intron | 40.0% | |
| CTTCAACCCCTTGATCTTTA+TGG | - | chr4.3:1142268-1142287 | None:intergenic | 40.0% | |
| GACTAAATGGTTGAGCTTCA+GGG | - | chr4.3:1143269-1143288 | None:intergenic | 40.0% | |
| GATTGAATGGTCTACACGTA+CGG | - | chr4.3:1141975-1141994 | None:intergenic | 40.0% | |
| GTGATCCCTAATAAGGTTGA+TGG | + | chr4.3:1142025-1142044 | MS.gene95850:intron | 40.0% | |
| TAGGTGCTTACAGGACTAAA+TGG | - | chr4.3:1143282-1143301 | None:intergenic | 40.0% | |
| TGCTCCCTGTGTATTCTTAA+AGG | - | chr4.3:1143023-1143042 | None:intergenic | 40.0% | |
| TTATGCTGTTGCTGAGCAAA+AGG | + | chr4.3:1143840-1143859 | MS.gene95850:CDS | 40.0% | |
| ! | ATGTTTTCACTCTAGATGCC+TGG | + | chr4.3:1142418-1142437 | MS.gene95850:intron | 40.0% |
| ! | TCTGCCTTATTGTCATGTGT+TGG | + | chr4.3:1142659-1142678 | MS.gene95850:intron | 40.0% |
| !! | GACAGGAGAATTTGCTATGT+TGG | - | chr4.3:1143214-1143233 | None:intergenic | 40.0% |
| !! | TAACCGTTTTTATCTGCCAG+AGG | - | chr4.3:1142769-1142788 | None:intergenic | 40.0% |
| AACCACAATGACCATGGAGA+AGG | + | chr4.3:1143966-1143985 | MS.gene95850:CDS | 45.0% | |
| ACCCTCCCATCAACCTTATT+AGG | - | chr4.3:1142034-1142053 | None:intergenic | 45.0% | |
| ATGGCGTTCGTCAAAGGATT+TGG | - | chr4.3:1143671-1143690 | None:intergenic | 45.0% | |
| CCAGTGGACCATAAAGATCA+AGG | + | chr4.3:1142257-1142276 | MS.gene95850:CDS | 45.0% | |
| CCCTCCCATCAACCTTATTA+GGG | - | chr4.3:1142033-1142052 | None:intergenic | 45.0% | |
| CCTTGATCTTTATGGTCCAC+TGG | - | chr4.3:1142260-1142279 | None:intergenic | 45.0% | |
| CTAAATGGTTGAGCTTCAGG+GGG | - | chr4.3:1143267-1143286 | None:intergenic | 45.0% | |
| GCTTCCATCGACCGTAAAAT+CGG | + | chr4.3:1143721-1143740 | MS.gene95850:CDS | 45.0% | |
| GGACTAAATGGTTGAGCTTC+AGG | - | chr4.3:1143270-1143289 | None:intergenic | 45.0% | |
| GGTCCTGAGATCAACATCAA+AGG | - | chr4.3:1143552-1143571 | None:intergenic | 45.0% | |
| ! | CACTCTGAGAAACCTTCAGT+TGG | + | chr4.3:1144066-1144085 | MS.gene95850:CDS | 45.0% |
| ! | GAAGCTCCGGTTGATACATA+AGG | - | chr4.3:1143898-1143917 | None:intergenic | 45.0% |
| ! | TAAGTGATGGCGTTCGTCAA+AGG | - | chr4.3:1143677-1143696 | None:intergenic | 45.0% |
| !! | CAAACCGATTTTACGGTCGA+TGG | - | chr4.3:1143728-1143747 | None:intergenic | 45.0% |
| !! | CCCTAATAAGGTTGATGGGA+GGG | + | chr4.3:1142030-1142049 | MS.gene95850:intron | 45.0% |
| !! | GGAGAAGTACTTCCAACTGA+AGG | - | chr4.3:1144081-1144100 | None:intergenic | 45.0% |
| !! | GGTTGATGGGAGGGTAATAT+TGG | + | chr4.3:1142039-1142058 | MS.gene95850:intron | 45.0% |
| !! | TCCCTAATAAGGTTGATGGG+AGG | + | chr4.3:1142029-1142048 | MS.gene95850:intron | 45.0% |
| !! | AAAATATAAAATATATGAAT+TGG | + | chr4.3:1142384-1142403 | MS.gene95850:intron | 5.0% |
| !! | AAATATAAAATATATGAATT+GGG | + | chr4.3:1142385-1142404 | MS.gene95850:intron | 5.0% |
| ATCAATGACTGCGACCGAGA+AGG | + | chr4.3:1142802-1142821 | MS.gene95850:CDS | 50.0% | |
| ATGTATCAACCGGAGCTTCG+TGG | + | chr4.3:1143899-1143918 | MS.gene95850:CDS | 50.0% | |
| GACCATGGAGAAGGTCGAAA+TGG | + | chr4.3:1143975-1143994 | MS.gene95850:CDS | 50.0% | |
| GACCTTCTCCATGGTCATTG+TGG | - | chr4.3:1143971-1143990 | None:intergenic | 50.0% | |
| GACTCCTGCTGCTGTTAAGA+AGG | + | chr4.3:1143579-1143598 | MS.gene95850:CDS | 50.0% | |
| GAGCAAAAGGCAAGTGATGC+TGG | + | chr4.3:1143853-1143872 | MS.gene95850:CDS | 50.0% | |
| TCAGCCTTCTTAACAGCAGC+AGG | - | chr4.3:1143586-1143605 | None:intergenic | 50.0% | |
| TGAATGGTCTACACGTACGG+AGG | - | chr4.3:1141972-1141991 | None:intergenic | 50.0% | |
| TGTATCAACCGGAGCTTCGT+GGG | + | chr4.3:1143900-1143919 | MS.gene95850:CDS | 50.0% | |
| ! | TCAAATGGCGTGATGGTGAC+AGG | - | chr4.3:1143231-1143250 | None:intergenic | 50.0% |
| ACGGTCGATGGAAGCAACTG+TGG | - | chr4.3:1143716-1143735 | None:intergenic | 55.0% | |
| AGACACAGCGGTGCTCTTGA+CGG | + | chr4.3:1143042-1143061 | MS.gene95850:CDS | 55.0% | |
| GGCCATTTCGACCTTCTCCA+TGG | - | chr4.3:1143980-1143999 | None:intergenic | 55.0% | |
| GTGAGCACCATGCTTGCCAA+AGG | + | chr4.3:1143613-1143632 | MS.gene95850:CDS | 55.0% | |
| TACACAGGGAGCAGACACAG+CGG | + | chr4.3:1143030-1143049 | MS.gene95850:CDS | 55.0% | |
| ! | CAGCAGCAGGAGTCTGCTTT+TGG | - | chr4.3:1143573-1143592 | None:intergenic | 55.0% |
| CAGCGGTGCTCTTGACGGTA+TGG | + | chr4.3:1143047-1143066 | MS.gene95850:intron | 60.0% | |
| GGAGAAGGTCGAAATGGCCG+AGG | + | chr4.3:1143981-1144000 | MS.gene95850:CDS | 60.0% | |
| GCTCGACACCCACGAAGCTC+CGG | - | chr4.3:1143911-1143930 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 1141737 | 1144149 | 1141737 | ID=MS.gene95850 |
| chr4.3 | mRNA | 1141737 | 1144149 | 1141737 | ID=MS.gene95850.t1;Parent=MS.gene95850 |
| chr4.3 | exon | 1141737 | 1141742 | 1141737 | ID=MS.gene95850.t1.exon1;Parent=MS.gene95850.t1 |
| chr4.3 | CDS | 1141737 | 1141742 | 1141737 | ID=cds.MS.gene95850.t1;Parent=MS.gene95850.t1 |
| chr4.3 | exon | 1142254 | 1142337 | 1142254 | ID=MS.gene95850.t1.exon2;Parent=MS.gene95850.t1 |
| chr4.3 | CDS | 1142254 | 1142337 | 1142254 | ID=cds.MS.gene95850.t1;Parent=MS.gene95850.t1 |
| chr4.3 | exon | 1142776 | 1142879 | 1142776 | ID=MS.gene95850.t1.exon3;Parent=MS.gene95850.t1 |
| chr4.3 | CDS | 1142776 | 1142879 | 1142776 | ID=cds.MS.gene95850.t1;Parent=MS.gene95850.t1 |
| chr4.3 | exon | 1142988 | 1143063 | 1142988 | ID=MS.gene95850.t1.exon4;Parent=MS.gene95850.t1 |
| chr4.3 | CDS | 1142988 | 1143063 | 1142988 | ID=cds.MS.gene95850.t1;Parent=MS.gene95850.t1 |
| chr4.3 | exon | 1143207 | 1143290 | 1143207 | ID=MS.gene95850.t1.exon5;Parent=MS.gene95850.t1 |
| chr4.3 | CDS | 1143207 | 1143290 | 1143207 | ID=cds.MS.gene95850.t1;Parent=MS.gene95850.t1 |
| chr4.3 | exon | 1143568 | 1144149 | 1143568 | ID=MS.gene95850.t1.exon6;Parent=MS.gene95850.t1 |
| chr4.3 | CDS | 1143568 | 1144149 | 1143568 | ID=cds.MS.gene95850.t1;Parent=MS.gene95850.t1 |
| Gene Sequence |
| Protein sequence |
