Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96031.t1 | KEH38548.1 | 99.4 | 670 | 4 | 0 | 1 | 670 | 13 | 682 | 0.00E+00 | 1370.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96031.t1 | Q9SYM5 | 88.1 | 671 | 76 | 2 | 1 | 669 | 1 | 669 | 0.0e+00 | 1232.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96031.t1 | A0A072VAU0 | 99.4 | 670 | 4 | 0 | 1 | 670 | 13 | 682 | 0.0e+00 | 1370.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene96031 | MS.gene053443 | PPI |
| MS.gene96031 | MS.gene073888 | PPI |
| MS.gene53517 | MS.gene96031 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96031.t1 | MTR_2g073240 | 99.403 | 670 | 4 | 0 | 1 | 670 | 13 | 682 | 0.0 | 1387 |
| MS.gene96031.t1 | MTR_0034s0060 | 89.671 | 668 | 68 | 1 | 1 | 668 | 131 | 797 | 0.0 | 1266 |
| MS.gene96031.t1 | MTR_1g009600 | 74.925 | 666 | 155 | 2 | 4 | 669 | 2 | 655 | 0.0 | 1047 |
| MS.gene96031.t1 | MTR_4g102550 | 82.007 | 289 | 52 | 0 | 380 | 668 | 7 | 295 | 6.03e-176 | 503 |
| MS.gene96031.t1 | MTR_3g452330 | 51.934 | 181 | 35 | 1 | 85 | 265 | 1 | 129 | 1.28e-48 | 171 |
| MS.gene96031.t1 | MTR_3g452330 | 63.918 | 97 | 35 | 0 | 379 | 475 | 141 | 237 | 1.36e-33 | 129 |
| MS.gene96031.t1 | MTR_2g096660 | 30.892 | 314 | 188 | 10 | 9 | 312 | 40 | 334 | 4.53e-27 | 113 |
| MS.gene96031.t1 | MTR_4g063600 | 28.939 | 311 | 198 | 10 | 9 | 312 | 34 | 328 | 3.29e-26 | 110 |
| MS.gene96031.t1 | MTR_4g063600 | 28.617 | 311 | 196 | 11 | 9 | 312 | 34 | 325 | 1.62e-25 | 108 |
| MS.gene96031.t1 | MTR_4g120030 | 27.937 | 315 | 194 | 11 | 7 | 312 | 111 | 401 | 1.97e-25 | 110 |
| MS.gene96031.t1 | MTR_8g089180 | 26.243 | 362 | 218 | 15 | 1 | 327 | 63 | 410 | 1.21e-24 | 107 |
| MS.gene96031.t1 | MTR_8g089180 | 26.243 | 362 | 218 | 15 | 1 | 327 | 63 | 410 | 1.21e-24 | 107 |
| MS.gene96031.t1 | MTR_2g032100 | 25.978 | 358 | 224 | 13 | 1 | 327 | 63 | 410 | 3.69e-24 | 105 |
| MS.gene96031.t1 | MTR_1g088480 | 27.653 | 311 | 196 | 12 | 9 | 312 | 120 | 408 | 2.29e-22 | 100 |
| MS.gene96031.t1 | MTR_4g129820 | 27.193 | 342 | 208 | 9 | 8 | 321 | 96 | 424 | 5.45e-22 | 99.8 |
| MS.gene96031.t1 | MTR_4g024600 | 26.822 | 343 | 208 | 8 | 8 | 321 | 102 | 430 | 3.34e-20 | 94.4 |
| MS.gene96031.t1 | MTR_4g102270 | 28.274 | 336 | 212 | 10 | 7 | 320 | 93 | 421 | 2.96e-19 | 91.3 |
| MS.gene96031.t1 | MTR_5g011940 | 26.571 | 350 | 222 | 10 | 5 | 326 | 88 | 430 | 4.65e-19 | 90.9 |
| MS.gene96031.t1 | MTR_0354s0040 | 26.608 | 342 | 210 | 8 | 8 | 321 | 83 | 411 | 8.45e-19 | 89.7 |
| MS.gene96031.t1 | MTR_8g099535 | 27.066 | 351 | 217 | 13 | 7 | 328 | 4 | 344 | 2.36e-18 | 87.4 |
| MS.gene96031.t1 | MTR_4g134490 | 24.719 | 356 | 217 | 15 | 7 | 327 | 25 | 364 | 2.99e-18 | 87.4 |
| MS.gene96031.t1 | MTR_3g084090 | 26.647 | 334 | 216 | 10 | 9 | 320 | 101 | 427 | 5.14e-17 | 84.7 |
| MS.gene96031.t1 | MTR_4g134490 | 24.586 | 362 | 216 | 16 | 7 | 327 | 25 | 370 | 1.69e-16 | 82.4 |
| MS.gene96031.t1 | MTR_2g032100 | 27.778 | 198 | 128 | 6 | 1 | 191 | 63 | 252 | 1.39e-15 | 78.6 |
| MS.gene96031.t1 | MTR_3g105440 | 29.796 | 245 | 147 | 9 | 1 | 234 | 1 | 231 | 1.58e-14 | 77.4 |
| MS.gene96031.t1 | MTR_3g105440 | 29.796 | 245 | 147 | 9 | 1 | 234 | 1 | 231 | 1.59e-14 | 77.4 |
| MS.gene96031.t1 | MTR_1g107455 | 24.377 | 361 | 218 | 14 | 6 | 318 | 18 | 371 | 2.11e-14 | 75.9 |
| MS.gene96031.t1 | MTR_3g101500 | 24.280 | 243 | 169 | 6 | 7 | 248 | 2 | 230 | 2.41e-12 | 68.9 |
| MS.gene96031.t1 | MTR_3g101500 | 24.280 | 243 | 169 | 6 | 7 | 248 | 2 | 230 | 4.22e-12 | 68.2 |
| MS.gene96031.t1 | MTR_4g056100 | 23.546 | 361 | 221 | 13 | 6 | 318 | 18 | 371 | 4.34e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96031.t1 | AT1G78570 | 88.077 | 671 | 76 | 2 | 1 | 669 | 1 | 669 | 0.0 | 1243 |
| MS.gene96031.t1 | AT3G14790 | 85.052 | 669 | 95 | 2 | 1 | 669 | 1 | 664 | 0.0 | 1171 |
| MS.gene96031.t1 | AT3G14790 | 85.052 | 669 | 95 | 2 | 1 | 669 | 4 | 667 | 0.0 | 1171 |
| MS.gene96031.t1 | AT1G53500 | 85.180 | 668 | 95 | 3 | 2 | 669 | 4 | 667 | 0.0 | 1163 |
| MS.gene96031.t1 | AT1G63000 | 83.746 | 283 | 46 | 0 | 387 | 669 | 15 | 297 | 5.48e-180 | 513 |
| MS.gene96031.t1 | AT2G28760 | 30.351 | 313 | 191 | 10 | 9 | 312 | 33 | 327 | 3.07e-28 | 116 |
| MS.gene96031.t1 | AT2G28760 | 30.351 | 313 | 191 | 10 | 9 | 312 | 33 | 327 | 3.07e-28 | 116 |
| MS.gene96031.t1 | AT2G28760 | 30.351 | 313 | 191 | 10 | 9 | 312 | 33 | 327 | 3.07e-28 | 116 |
| MS.gene96031.t1 | AT4G20460 | 27.714 | 350 | 212 | 12 | 8 | 327 | 71 | 409 | 7.25e-28 | 117 |
| MS.gene96031.t1 | AT2G28760 | 30.351 | 313 | 191 | 10 | 9 | 312 | 64 | 358 | 7.31e-28 | 116 |
| MS.gene96031.t1 | AT5G59290 | 30.032 | 313 | 192 | 10 | 9 | 312 | 3 | 297 | 9.38e-28 | 114 |
| MS.gene96031.t1 | AT5G59290 | 30.032 | 313 | 192 | 10 | 9 | 312 | 32 | 326 | 1.33e-27 | 114 |
| MS.gene96031.t1 | AT5G59290 | 30.032 | 313 | 192 | 10 | 9 | 312 | 25 | 319 | 1.65e-27 | 114 |
| MS.gene96031.t1 | AT5G59290 | 30.032 | 313 | 192 | 10 | 9 | 312 | 47 | 341 | 1.92e-27 | 114 |
| MS.gene96031.t1 | AT3G46440 | 29.712 | 313 | 193 | 10 | 9 | 312 | 31 | 325 | 3.67e-27 | 113 |
| MS.gene96031.t1 | AT3G46440 | 29.712 | 313 | 193 | 10 | 9 | 312 | 31 | 325 | 3.67e-27 | 113 |
| MS.gene96031.t1 | AT3G53520 | 27.500 | 320 | 208 | 10 | 9 | 321 | 122 | 424 | 5.42e-25 | 108 |
| MS.gene96031.t1 | AT3G62830 | 27.476 | 313 | 199 | 10 | 9 | 312 | 121 | 414 | 9.45e-25 | 108 |
| MS.gene96031.t1 | AT3G62830 | 27.476 | 313 | 199 | 10 | 9 | 312 | 121 | 414 | 9.45e-25 | 108 |
| MS.gene96031.t1 | AT2G47650 | 27.157 | 313 | 200 | 10 | 9 | 312 | 123 | 416 | 3.31e-24 | 106 |
| MS.gene96031.t1 | AT5G44480 | 26.989 | 352 | 210 | 15 | 8 | 326 | 72 | 409 | 8.15e-24 | 105 |
| MS.gene96031.t1 | AT5G44480 | 26.989 | 352 | 210 | 15 | 8 | 326 | 72 | 409 | 8.15e-24 | 105 |
| MS.gene96031.t1 | AT5G44480 | 26.989 | 352 | 210 | 15 | 8 | 326 | 72 | 409 | 8.15e-24 | 105 |
| MS.gene96031.t1 | AT5G44480 | 26.989 | 352 | 210 | 15 | 8 | 326 | 96 | 433 | 1.15e-23 | 104 |
| MS.gene96031.t1 | AT2G47650 | 26.498 | 317 | 203 | 10 | 9 | 312 | 123 | 422 | 5.42e-23 | 103 |
| MS.gene96031.t1 | AT1G30620 | 27.809 | 356 | 214 | 15 | 4 | 327 | 65 | 409 | 1.02e-22 | 101 |
| MS.gene96031.t1 | AT3G53520 | 27.187 | 320 | 207 | 11 | 9 | 321 | 122 | 422 | 1.08e-22 | 102 |
| MS.gene96031.t1 | AT1G30620 | 27.809 | 356 | 214 | 15 | 4 | 327 | 66 | 410 | 1.13e-22 | 101 |
| MS.gene96031.t1 | AT1G30620 | 27.809 | 356 | 214 | 15 | 4 | 327 | 66 | 410 | 1.13e-22 | 101 |
| MS.gene96031.t1 | AT1G30620 | 27.809 | 356 | 214 | 15 | 4 | 327 | 66 | 410 | 1.13e-22 | 101 |
| MS.gene96031.t1 | AT1G30620 | 27.809 | 356 | 214 | 15 | 4 | 327 | 66 | 410 | 1.13e-22 | 101 |
| MS.gene96031.t1 | AT3G53520 | 25.948 | 343 | 207 | 11 | 9 | 321 | 122 | 447 | 7.10e-22 | 99.8 |
| MS.gene96031.t1 | AT1G63180 | 26.331 | 357 | 222 | 14 | 1 | 327 | 1 | 346 | 1.23e-20 | 94.4 |
| MS.gene96031.t1 | AT4G00110 | 26.844 | 339 | 219 | 8 | 8 | 324 | 92 | 423 | 2.89e-20 | 94.4 |
| MS.gene96031.t1 | AT2G45310 | 26.608 | 342 | 222 | 9 | 2 | 321 | 92 | 426 | 1.20e-19 | 92.8 |
| MS.gene96031.t1 | AT1G02000 | 25.893 | 336 | 220 | 9 | 8 | 321 | 93 | 421 | 1.12e-18 | 89.7 |
| MS.gene96031.t1 | AT4G30440 | 30.901 | 233 | 151 | 6 | 8 | 234 | 89 | 317 | 2.94e-18 | 88.2 |
| MS.gene96031.t1 | AT1G64440 | 27.920 | 351 | 210 | 15 | 8 | 327 | 4 | 342 | 7.15e-18 | 86.3 |
| MS.gene96031.t1 | AT1G30620 | 30.256 | 195 | 121 | 6 | 4 | 191 | 66 | 252 | 1.43e-17 | 84.3 |
| MS.gene96031.t1 | AT3G53520 | 27.897 | 233 | 148 | 7 | 8 | 234 | 121 | 339 | 2.22e-17 | 84.7 |
| MS.gene96031.t1 | AT4G23920 | 26.163 | 344 | 219 | 12 | 7 | 323 | 3 | 338 | 5.15e-16 | 80.5 |
| MS.gene96031.t1 | AT1G63180 | 26.689 | 296 | 181 | 11 | 1 | 267 | 1 | 289 | 5.71e-16 | 79.7 |
| MS.gene96031.t1 | AT3G23820 | 26.866 | 335 | 216 | 10 | 8 | 320 | 113 | 440 | 1.18e-15 | 80.5 |
| MS.gene96031.t1 | AT1G47290 | 26.757 | 370 | 201 | 15 | 3 | 319 | 6 | 358 | 9.31e-15 | 77.0 |
| MS.gene96031.t1 | AT4G12250 | 26.100 | 341 | 223 | 8 | 3 | 321 | 92 | 425 | 1.36e-14 | 77.0 |
| MS.gene96031.t1 | AT1G47290 | 26.757 | 370 | 201 | 15 | 3 | 319 | 6 | 358 | 2.52e-14 | 76.3 |
| MS.gene96031.t1 | AT2G26260 | 26.506 | 249 | 148 | 8 | 2 | 234 | 5 | 234 | 2.11e-13 | 73.9 |
| MS.gene96031.t1 | AT1G73250 | 28.022 | 182 | 119 | 5 | 151 | 322 | 140 | 319 | 6.22e-13 | 70.9 |
Find 151 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAACTCATTCTTCAATT+TGG | 0.167758 | 2.4:+22829760 | None:intergenic |
| GCTTACCATTGCCTTGGTTT+TGG | 0.211812 | 2.4:+22830307 | None:intergenic |
| TCTTTGATGGAAAGCAATTC+TGG | 0.218557 | 2.4:+22829740 | None:intergenic |
| TTCACCAAGAACAACATTTA+TGG | 0.223050 | 2.4:-22831550 | MS.gene96031:CDS |
| GTTGGACATGTTTACAATAT+TGG | 0.241068 | 2.4:-22831127 | MS.gene96031:CDS |
| CCCTTCACAAACTTGAAGTT+TGG | 0.241790 | 2.4:+22831688 | None:intergenic |
| TTTGCCATCTCAATTGAAAT+AGG | 0.250438 | 2.4:+22829956 | None:intergenic |
| AACCCAATGCCTGAACCTTC+TGG | 0.281709 | 2.4:+22830371 | None:intergenic |
| TAGAAAGAACCCGCGAAATT+AGG | 0.282017 | 2.4:+22830332 | None:intergenic |
| CTTGATAAGTGATTCTTTGA+TGG | 0.295568 | 2.4:+22829727 | None:intergenic |
| CAAGGGATTCCATATGAATA+TGG | 0.304468 | 2.4:-22830638 | MS.gene96031:CDS |
| ATGACAATGTATGCACTCTA+AGG | 0.309718 | 2.4:-22830096 | MS.gene96031:CDS |
| TCCAAACAGCATGACTGTTT+TGG | 0.309945 | 2.4:-22829990 | MS.gene96031:CDS |
| GGTATATCAACAATCCTAAT+TGG | 0.322317 | 2.4:-22830904 | MS.gene96031:CDS |
| ACTCATGTCGACAACTCTTT+TGG | 0.326250 | 2.4:-22831586 | MS.gene96031:CDS |
| TTAGAAGCTTGCAAGGTAAC+TGG | 0.328359 | 2.4:-22831514 | MS.gene96031:CDS |
| TGAAGTTCCAGATACCTCTT+AGG | 0.329274 | 2.4:+22829927 | None:intergenic |
| AAGTTAGCCCACTTGAAGTT+TGG | 0.358387 | 2.4:+22829845 | None:intergenic |
| AATTGTTGTCCTCGACAAAC+TGG | 0.359428 | 2.4:-22831755 | MS.gene96031:CDS |
| GGCAAAGTTCTTCCGATTCA+TGG | 0.359735 | 2.4:-22831229 | MS.gene96031:CDS |
| CTCACATCGCCCCACCAATT+AGG | 0.372048 | 2.4:+22830890 | None:intergenic |
| ATCCAGAAGGTTCAGGCATT+GGG | 0.372283 | 2.4:-22830373 | MS.gene96031:CDS |
| AGTACCATAAATGTTGTTCT+TGG | 0.373878 | 2.4:+22831546 | None:intergenic |
| TTTGTCGTAACGCGAAATCT+TGG | 0.379172 | 2.4:+22830024 | None:intergenic |
| ACACGTGGAAACAATGTCTA+TGG | 0.379199 | 2.4:-22831307 | MS.gene96031:CDS |
| TCCAAAACAGTCATGCTGTT+TGG | 0.382722 | 2.4:+22829989 | None:intergenic |
| AGAGGAACCTAAGAGGTATC+TGG | 0.395333 | 2.4:-22829934 | MS.gene96031:CDS |
| CTTTGATGGAAAGCAATTCT+GGG | 0.407319 | 2.4:+22829741 | None:intergenic |
| ACAGATGAAGACGCTGTTGT+TGG | 0.408612 | 2.4:-22831442 | MS.gene96031:CDS |
| ATCCTCATTACCGGGGCAGC+TGG | 0.408875 | 2.4:-22831832 | MS.gene96031:CDS |
| CCAATCAACATTAGGTCTTC+CGG | 0.409041 | 2.4:+22830529 | None:intergenic |
| AGGTTCAGGCATTGGGTTCA+AGG | 0.412510 | 2.4:-22830366 | MS.gene96031:CDS |
| CGATCAAAAGTTGAAGGTGT+TGG | 0.413891 | 2.4:-22830978 | MS.gene96031:CDS |
| CAAACTCTTCTCAATTGATC+CGG | 0.414049 | 2.4:-22831059 | MS.gene96031:CDS |
| TGGTAGGTCATATGGATTAC+CGG | 0.423578 | 2.4:-22831338 | MS.gene96031:CDS |
| ATGGCATATGGTAGGTCATA+TGG | 0.427425 | 2.4:-22831346 | MS.gene96031:CDS |
| TCTTGACGATCAAAAGTTGA+AGG | 0.429287 | 2.4:-22830984 | MS.gene96031:CDS |
| GTTGGATAGGTGGTTTGCTT+GGG | 0.430307 | 2.4:-22830676 | MS.gene96031:CDS |
| GTAAGCACTGATGAGGTCTA+TGG | 0.433555 | 2.4:-22831469 | MS.gene96031:CDS |
| GGTTGGATAGGTGGTTTGCT+TGG | 0.434893 | 2.4:-22830677 | MS.gene96031:CDS |
| CATCCAGAAGGTTCAGGCAT+TGG | 0.437868 | 2.4:-22830374 | MS.gene96031:CDS |
| TTGCGTCTCATGTTGCCAAC+CGG | 0.441564 | 2.4:-22831804 | MS.gene96031:CDS |
| ATTCCATATGAATATGGAAA+AGG | 0.444160 | 2.4:-22830632 | MS.gene96031:CDS |
| GAAGAGCCAGTGCTCTTTGT+AGG | 0.444599 | 2.4:+22830740 | None:intergenic |
| AAGTTTGGAGACGATCTTGA+AGG | 0.451414 | 2.4:+22831703 | None:intergenic |
| TAGCTAGCTTACCATTGCCT+TGG | 0.452476 | 2.4:+22830301 | None:intergenic |
| CCATACTCTGCAACAAAAGC+TGG | 0.453013 | 2.4:-22831385 | MS.gene96031:CDS |
| CGTTGTTGGGACTTTAACAT+TGG | 0.453861 | 2.4:-22830471 | MS.gene96031:CDS |
| GAAGCTCATCCAGAAGGTTC+AGG | 0.456647 | 2.4:-22830380 | MS.gene96031:CDS |
| GATTCGCACCAATCAACATT+AGG | 0.457249 | 2.4:+22830521 | None:intergenic |
| CCATCCGTGTCAACGTTGTT+GGG | 0.465475 | 2.4:-22830484 | MS.gene96031:CDS |
| CGCAATGAATCCAGCTGCCC+CGG | 0.466589 | 2.4:+22831822 | None:intergenic |
| ACCATCCGTGTCAACGTTGT+TGG | 0.468379 | 2.4:-22830485 | MS.gene96031:CDS |
| AAGTATCTCTGATCATTAAA+CGG | 0.469948 | 2.4:+22831007 | None:intergenic |
| ATCTGGAACTTCACAAATCC+TGG | 0.472596 | 2.4:-22829917 | MS.gene96031:CDS |
| TTCAATGCAGCAGGTGTGAC+CGG | 0.474049 | 2.4:-22830548 | MS.gene96031:CDS |
| GTTGAAGGTGTTGGGTTGGT+CGG | 0.479058 | 2.4:-22830969 | MS.gene96031:CDS |
| GAGACGATCTTGAAGGAATG+AGG | 0.483072 | 2.4:+22831710 | None:intergenic |
| GAAATGCTCGTCATGGCATA+TGG | 0.483670 | 2.4:-22831358 | MS.gene96031:CDS |
| TTACAATATTGGAACTAAGA+AGG | 0.484035 | 2.4:-22831116 | MS.gene96031:CDS |
| GTTGCAGAGTATGGATTTGT+CGG | 0.487000 | 2.4:+22831394 | None:intergenic |
| GATTCCAAAGTTCATCCTCT+TGG | 0.490837 | 2.4:-22831260 | MS.gene96031:CDS |
| TTGCTTAGGTCAGATGAAAT+CGG | 0.492377 | 2.4:+22830064 | None:intergenic |
| TATGGAAGAACTGGTTGGAT+AGG | 0.498201 | 2.4:-22830689 | MS.gene96031:CDS |
| TCTTCCTATTTCAATTGAGA+TGG | 0.498900 | 2.4:-22829960 | MS.gene96031:CDS |
| TCGTTGTGGCTCACGGCACC+AGG | 0.499084 | 2.4:+22829899 | None:intergenic |
| TCTTGCAGCAACTATCACTT+TGG | 0.499126 | 2.4:+22829805 | None:intergenic |
| AGACCTCATCAGTGCTTACA+TGG | 0.502767 | 2.4:+22831473 | None:intergenic |
| TTCCATATGAATATGGAAAA+GGG | 0.506901 | 2.4:-22830631 | MS.gene96031:CDS |
| TAGCATAGTTCATCATCAAA+AGG | 0.516883 | 2.4:+22830426 | None:intergenic |
| ATCCTTCACAAGGGAGAGGT+TGG | 0.517164 | 2.4:-22831145 | MS.gene96031:CDS |
| TGCAAGAAGCAACAATGAAA+TGG | 0.518316 | 2.4:-22829789 | MS.gene96031:CDS |
| TGAAATTGCGTGGATTGCTT+AGG | 0.528340 | 2.4:+22830050 | None:intergenic |
| GTTCTTCCGATTCATGGTGA+TGG | 0.528720 | 2.4:-22831223 | MS.gene96031:CDS |
| TTTCCACGTGTTGTGATCAC+CGG | 0.531578 | 2.4:+22831319 | None:intergenic |
| TTGATGATGAACTATGCTAC+CGG | 0.533136 | 2.4:-22830422 | MS.gene96031:CDS |
| GGAAGAACTGGTTGGATAGG+TGG | 0.533164 | 2.4:-22830686 | MS.gene96031:CDS |
| GGGAAATTGTGTGAGAAACA+AGG | 0.534485 | 2.4:-22830656 | MS.gene96031:CDS |
| GATCAAAAGTTGAAGGTGTT+GGG | 0.534566 | 2.4:-22830977 | MS.gene96031:CDS |
| TTTGAACCATCACCATGAAT+CGG | 0.534712 | 2.4:+22831217 | None:intergenic |
| GAGAGAACAACATGGGAAGA+AGG | 0.538587 | 2.4:-22830947 | MS.gene96031:CDS |
| TATCAACAATCCTAATTGGT+GGG | 0.540325 | 2.4:-22830900 | MS.gene96031:CDS |
| ATTGTTGATATACCAGTCCA+TGG | 0.546234 | 2.4:+22830913 | None:intergenic |
| ATTGCCAAGAGGATGAACTT+TGG | 0.546625 | 2.4:+22831256 | None:intergenic |
| TCCAAACTTCAAGTTTGTGA+AGG | 0.548482 | 2.4:-22831689 | MS.gene96031:CDS |
| CGGGATAGTTTCGGATAAGC+CGG | 0.548732 | 2.4:+22831785 | None:intergenic |
| CCGGAAGACCTAATGTTGAT+TGG | 0.549014 | 2.4:-22830529 | MS.gene96031:CDS |
| CCGAAAATGTTAATGATGCC+TGG | 0.549298 | 2.4:-22830848 | MS.gene96031:CDS |
| TGATCTATGGAAGAACTGGT+TGG | 0.550003 | 2.4:-22830694 | MS.gene96031:CDS |
| GTTAATGATGCCTGGTGGGA+TGG | 0.550016 | 2.4:-22830840 | MS.gene96031:CDS |
| TTCATCCTCTTGGCAATGCA+AGG | 0.552588 | 2.4:-22831250 | MS.gene96031:CDS |
| ATCCAGCTGCCCCGGTAATG+AGG | 0.552923 | 2.4:+22831830 | None:intergenic |
| GGATGGAGAGACATTTCAAT+GGG | 0.556466 | 2.4:-22830823 | MS.gene96031:CDS |
| TTCTTTCTATTCCAAAACCA+AGG | 0.556902 | 2.4:-22830318 | MS.gene96031:CDS |
| AGAAGACACTCCTAATTTCG+CGG | 0.558498 | 2.4:-22830342 | MS.gene96031:CDS |
| AAGAATCTCGTTGTGGCTCA+CGG | 0.558506 | 2.4:+22829892 | None:intergenic |
| CCCAACAACGTTGACACGGA+TGG | 0.559674 | 2.4:+22830484 | None:intergenic |
| GAAGACACTCCTAATTTCGC+GGG | 0.561579 | 2.4:-22830341 | MS.gene96031:CDS |
| AGTTATCCTTCACAAGGGAG+AGG | 0.564603 | 2.4:-22831149 | MS.gene96031:CDS |
| GGAAATTGTGTGAGAAACAA+GGG | 0.564756 | 2.4:-22830655 | MS.gene96031:CDS |
| CGATAGACTCAGTGATGAGA+AGG | 0.564861 | 2.4:+22831635 | None:intergenic |
| AAAAGTTGAAGGTGTTGGGT+TGG | 0.566545 | 2.4:-22830973 | MS.gene96031:CDS |
| CTATTCCAAAACCAAGGCAA+TGG | 0.566752 | 2.4:-22830312 | MS.gene96031:intron |
| AAATGTCTCTCCATCCCACC+AGG | 0.569236 | 2.4:+22830830 | None:intergenic |
| GGGATGGAGAGACATTTCAA+TGG | 0.570949 | 2.4:-22830824 | MS.gene96031:CDS |
| CCAAACTTCAAGTTTGTGAA+GGG | 0.574994 | 2.4:-22831688 | MS.gene96031:CDS |
| CTTTGCCTTGCATTGCCAAG+AGG | 0.578961 | 2.4:+22831245 | None:intergenic |
| ACATTGATCCAAACTTCAAG+TGG | 0.579567 | 2.4:-22829853 | MS.gene96031:CDS |
| CTCAAGTACTAATACTCGAA+TGG | 0.579731 | 2.4:-22830771 | MS.gene96031:CDS |
| TGTCTTATTAGAAGCTTGCA+AGG | 0.580370 | 2.4:-22831521 | MS.gene96031:CDS |
| TGAGAAGAGTTTGCAAACAT+CGG | 0.583342 | 2.4:+22831069 | None:intergenic |
| ATATCAACAATCCTAATTGG+TGG | 0.585366 | 2.4:-22830901 | MS.gene96031:CDS |
| TGCTCGTCATGGCATATGGT+AGG | 0.590673 | 2.4:-22831354 | MS.gene96031:CDS |
| GAGCCAGTGCTCTTTGTAGG+TGG | 0.595767 | 2.4:+22830743 | None:intergenic |
| TGAGGATCGTTCATCACTCG+TGG | 0.597692 | 2.4:-22830603 | MS.gene96031:CDS |
| ATCAACAATCCTAATTGGTG+GGG | 0.599048 | 2.4:-22830899 | MS.gene96031:CDS |
| GTCCAACCTCTCCCTTGTGA+AGG | 0.603035 | 2.4:+22831143 | None:intergenic |
| GCTTGAAGAAAACCATGGAC+TGG | 0.603416 | 2.4:-22830925 | MS.gene96031:CDS |
| TACGATGAAGCTCATCCAGA+AGG | 0.603432 | 2.4:-22830386 | MS.gene96031:CDS |
| GTATTAGTACTTGAGACAAA+CGG | 0.603642 | 2.4:+22830779 | None:intergenic |
| GCTGCATTGAAAATATGAGT+TGG | 0.608521 | 2.4:+22830560 | None:intergenic |
| AACAGTAATCCAGTTTGTCG+AGG | 0.609557 | 2.4:+22831746 | None:intergenic |
| ATAGTTTCGGATAAGCCGGT+TGG | 0.611803 | 2.4:+22831789 | None:intergenic |
| TGATGATGAACTATGCTACC+GGG | 0.618950 | 2.4:-22830421 | MS.gene96031:CDS |
| ATGGCAAAGAGGAACCTAAG+AGG | 0.622901 | 2.4:-22829941 | MS.gene96031:CDS |
| GAAGAGTTTGCAAACATCGG+TGG | 0.623592 | 2.4:+22831072 | None:intergenic |
| TGGAGCAGAAATGCTCGTCA+TGG | 0.624307 | 2.4:-22831365 | MS.gene96031:CDS |
| TGACAATGTATGCACTCTAA+GGG | 0.624920 | 2.4:-22830095 | MS.gene96031:CDS |
| TTTCAATTGAGATGGCAAAG+AGG | 0.627252 | 2.4:-22829952 | MS.gene96031:CDS |
| ATCGTACTCGAATATGCACC+CGG | 0.629832 | 2.4:+22830403 | None:intergenic |
| GTTCCACCTACAAAGAGCAC+TGG | 0.630084 | 2.4:-22830746 | MS.gene96031:CDS |
| CATCCATGTAAGCACTGATG+AGG | 0.632531 | 2.4:-22831476 | MS.gene96031:CDS |
| AAGTCCCAACAACGTTGACA+CGG | 0.632986 | 2.4:+22830480 | None:intergenic |
| ATCTTGGTGATGAAATTGCG+TGG | 0.640692 | 2.4:+22830040 | None:intergenic |
| AATTGGTGGGGCGATGTGAG+TGG | 0.640742 | 2.4:-22830887 | MS.gene96031:CDS |
| ATATGGAAAAGGGCGTCTTG+AGG | 0.643401 | 2.4:-22830621 | MS.gene96031:CDS |
| TGATGAGAAGGTAGTTGACA+AGG | 0.649249 | 2.4:+22831647 | None:intergenic |
| CGCTGTTGTTGGAAACCACG+AGG | 0.649454 | 2.4:-22831431 | MS.gene96031:CDS |
| AGAAGGCTTGAAGAAAACCA+TGG | 0.651189 | 2.4:-22830930 | MS.gene96031:CDS |
| CATTGATCCAAACTTCAAGT+GGG | 0.662099 | 2.4:-22829852 | MS.gene96031:CDS |
| AAGTACTAATACTCGAATGG+TGG | 0.665787 | 2.4:-22830768 | MS.gene96031:CDS |
| AAATGTTAATGATGCCTGGT+GGG | 0.666092 | 2.4:-22830844 | MS.gene96031:CDS |
| TTACCGGTGATCACAACACG+TGG | 0.677722 | 2.4:-22831322 | MS.gene96031:CDS |
| ACATCTCAAGAATCTCGTTG+TGG | 0.679203 | 2.4:+22829885 | None:intergenic |
| GTATTGTGAAGATGTTGCAG+AGG | 0.681547 | 2.4:-22831179 | MS.gene96031:CDS |
| TTTGAAGTTATCCTTCACAA+GGG | 0.689401 | 2.4:-22831154 | MS.gene96031:CDS |
| TTGGTCGGAGAGAACAACAT+GGG | 0.701272 | 2.4:-22830954 | MS.gene96031:CDS |
| ATGGTGATGGTTCAAATGTG+AGG | 0.706627 | 2.4:-22831210 | MS.gene96031:CDS |
| GAAGTAGCTGAGAAGCCTCG+TGG | 0.715995 | 2.4:+22831416 | None:intergenic |
| GTTGGTCGGAGAGAACAACA+TGG | 0.719943 | 2.4:-22830955 | MS.gene96031:CDS |
| AAAATGTTAATGATGCCTGG+TGG | 0.736377 | 2.4:-22830845 | MS.gene96031:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCATAATCATAATGTAAA+TGG | + | chr2.4:22831378-22831397 | None:intergenic | 15.0% |
| ! | AAGTATCTCTGATCATTAAA+CGG | + | chr2.4:22830546-22830565 | None:intergenic | 25.0% |
| ! | ATTCCATATGAATATGGAAA+AGG | - | chr2.4:22830918-22830937 | MS.gene96031:CDS | 25.0% |
| ! | TCAAACAAAAGGAATCATAA+TGG | + | chr2.4:22831303-22831322 | None:intergenic | 25.0% |
| ! | TTACAATATTGGAACTAAGA+AGG | - | chr2.4:22830434-22830453 | MS.gene96031:CDS | 25.0% |
| ! | TTCCATATGAATATGGAAAA+GGG | - | chr2.4:22830919-22830938 | MS.gene96031:CDS | 25.0% |
| !! | AAAAGGAATCATAATGGAAA+CGG | + | chr2.4:22831297-22831316 | None:intergenic | 25.0% |
| !! | TTGAACAAGATTTGTTCAAT+AGG | + | chr2.4:22831349-22831368 | None:intergenic | 25.0% |
| !!! | ACAAATTTTATACTAGTCTC+CGG | + | chr2.4:22830513-22830532 | None:intergenic | 25.0% |
| AGTACCATAAATGTTGTTCT+TGG | + | chr2.4:22830007-22830026 | None:intergenic | 30.0% | |
| ATATCAACAATCCTAATTGG+TGG | - | chr2.4:22830649-22830668 | MS.gene96031:CDS | 30.0% | |
| CTTGATAAGTGATTCTTTGA+TGG | + | chr2.4:22831826-22831845 | None:intergenic | 30.0% | |
| GGTATATCAACAATCCTAAT+TGG | - | chr2.4:22830646-22830665 | MS.gene96031:CDS | 30.0% | |
| GTATTAGTACTTGAGACAAA+CGG | + | chr2.4:22830774-22830793 | None:intergenic | 30.0% | |
| GTTGGACATGTTTACAATAT+TGG | - | chr2.4:22830423-22830442 | MS.gene96031:CDS | 30.0% | |
| TAGCATAGTTCATCATCAAA+AGG | + | chr2.4:22831127-22831146 | None:intergenic | 30.0% | |
| TATCAACAATCCTAATTGGT+GGG | - | chr2.4:22830650-22830669 | MS.gene96031:CDS | 30.0% | |
| TCTTCCTATTTCAATTGAGA+TGG | - | chr2.4:22831590-22831609 | MS.gene96031:CDS | 30.0% | |
| TTAATCTGTGAATGTTTCTC+AGG | - | chr2.4:22831410-22831429 | MS.gene96031:CDS | 30.0% | |
| TTCACCAAGAACAACATTTA+TGG | - | chr2.4:22830000-22830019 | MS.gene96031:CDS | 30.0% | |
| TTCTTTCTATTCCAAAACCA+AGG | - | chr2.4:22831232-22831251 | MS.gene96031:CDS | 30.0% | |
| TTTGCCATCTCAATTGAAAT+AGG | + | chr2.4:22831597-22831616 | None:intergenic | 30.0% | |
| ! | ATCATTAACATTTTCGGATG+AGG | + | chr2.4:22830699-22830718 | None:intergenic | 30.0% |
| ! | TTTGAAGTTATCCTTCACAA+GGG | - | chr2.4:22830396-22830415 | MS.gene96031:CDS | 30.0% |
| ! | TTTTTGATCTATGGAAGAAC+TGG | - | chr2.4:22830852-22830871 | MS.gene96031:CDS | 30.0% |
| !! | AACTTTTCAGGAAACTGATT+GGG | + | chr2.4:22830270-22830289 | None:intergenic | 30.0% |
| !! | ATTCCTTTTGTTTGAAATCG+AGG | - | chr2.4:22831308-22831327 | MS.gene96031:CDS | 30.0% |
| !!! | AACTTTGGAATCAACTTTTC+AGG | + | chr2.4:22830282-22830301 | None:intergenic | 30.0% |
| !!! | TTTTGAAGTTATCCTTCACA+AGG | - | chr2.4:22830395-22830414 | MS.gene96031:CDS | 30.0% |
| AAAAAACATCCTCATTACCG+GGG | - | chr2.4:22829711-22829730 | MS.gene96031:CDS | 35.0% | |
| AAAATGTTAATGATGCCTGG+TGG | - | chr2.4:22830705-22830724 | MS.gene96031:CDS | 35.0% | |
| AAATGTTAATGATGCCTGGT+GGG | - | chr2.4:22830706-22830725 | MS.gene96031:CDS | 35.0% | |
| AAGTACTAATACTCGAATGG+TGG | - | chr2.4:22830782-22830801 | MS.gene96031:CDS | 35.0% | |
| ACATTGATCCAAACTTCAAG+TGG | - | chr2.4:22831697-22831716 | MS.gene96031:CDS | 35.0% | |
| ATCAACAATCCTAATTGGTG+GGG | - | chr2.4:22830651-22830670 | MS.gene96031:CDS | 35.0% | |
| ATGACAATGTATGCACTCTA+AGG | - | chr2.4:22831454-22831473 | MS.gene96031:CDS | 35.0% | |
| ATTGTTGATATACCAGTCCA+TGG | + | chr2.4:22830640-22830659 | None:intergenic | 35.0% | |
| CAAAAAACATCCTCATTACC+GGG | - | chr2.4:22829710-22829729 | MS.gene96031:CDS | 35.0% | |
| CAAACTCTTCTCAATTGATC+CGG | - | chr2.4:22830491-22830510 | MS.gene96031:CDS | 35.0% | |
| CAAGGGATTCCATATGAATA+TGG | - | chr2.4:22830912-22830931 | MS.gene96031:CDS | 35.0% | |
| CATTGATCCAAACTTCAAGT+GGG | - | chr2.4:22831698-22831717 | MS.gene96031:CDS | 35.0% | |
| CCAAAAAACATCCTCATTAC+CGG | - | chr2.4:22829709-22829728 | MS.gene96031:CDS | 35.0% | |
| CCATAGATCAAAAACTTGAG+AGG | + | chr2.4:22830846-22830865 | None:intergenic | 35.0% | |
| CTCAAGTACTAATACTCGAA+TGG | - | chr2.4:22830779-22830798 | MS.gene96031:CDS | 35.0% | |
| CTTTGATGGAAAGCAATTCT+GGG | + | chr2.4:22831812-22831831 | None:intergenic | 35.0% | |
| GCTGCATTGAAAATATGAGT+TGG | + | chr2.4:22830993-22831012 | None:intergenic | 35.0% | |
| GGAAATTGTGTGAGAAACAA+GGG | - | chr2.4:22830895-22830914 | MS.gene96031:CDS | 35.0% | |
| TAGATCAAAAACTTGAGAGG+AGG | + | chr2.4:22830843-22830862 | None:intergenic | 35.0% | |
| TCTTGACGATCAAAAGTTGA+AGG | - | chr2.4:22830566-22830585 | MS.gene96031:CDS | 35.0% | |
| TCTTTGATGGAAAGCAATTC+TGG | + | chr2.4:22831813-22831832 | None:intergenic | 35.0% | |
| TGACAATGTATGCACTCTAA+GGG | - | chr2.4:22831455-22831474 | MS.gene96031:CDS | 35.0% | |
| TGAGAAGAGTTTGCAAACAT+CGG | + | chr2.4:22830484-22830503 | None:intergenic | 35.0% | |
| TGCAAGAAGCAACAATGAAA+TGG | - | chr2.4:22831761-22831780 | MS.gene96031:CDS | 35.0% | |
| TGGGAACTCATTCTTCAATT+TGG | + | chr2.4:22831793-22831812 | None:intergenic | 35.0% | |
| TGTCCTCGATTTCAAACAAA+AGG | + | chr2.4:22831314-22831333 | None:intergenic | 35.0% | |
| TTGCTTAGGTCAGATGAAAT+CGG | + | chr2.4:22831489-22831508 | None:intergenic | 35.0% | |
| TTTCAATTGAGATGGCAAAG+AGG | - | chr2.4:22831598-22831617 | MS.gene96031:CDS | 35.0% | |
| TTTGAACCATCACCATGAAT+CGG | + | chr2.4:22830336-22830355 | None:intergenic | 35.0% | |
| ! | ACTCATATTTTCAATGCAGC+AGG | - | chr2.4:22830993-22831012 | MS.gene96031:CDS | 35.0% |
| ! | AGGACAACAATTTTGTAGTC+GGG | + | chr2.4:22829787-22829806 | None:intergenic | 35.0% |
| ! | CATGGATGAATCTTTTGATC+TGG | + | chr2.4:22830062-22830081 | None:intergenic | 35.0% |
| ! | CCAAACTTCAAGTTTGTGAA+GGG | - | chr2.4:22829862-22829881 | MS.gene96031:CDS | 35.0% |
| ! | CCAGGCATCATTAACATTTT+CGG | + | chr2.4:22830705-22830724 | None:intergenic | 35.0% |
| ! | CCTCTCAAGTTTTTGATCTA+TGG | - | chr2.4:22830843-22830862 | MS.gene96031:CDS | 35.0% |
| ! | GAGGACAACAATTTTGTAGT+CGG | + | chr2.4:22829788-22829807 | None:intergenic | 35.0% |
| ! | TCCAAACTTCAAGTTTGTGA+AGG | - | chr2.4:22829861-22829880 | MS.gene96031:CDS | 35.0% |
| ! | TGTCTTATTAGAAGCTTGCA+AGG | - | chr2.4:22830029-22830048 | MS.gene96031:CDS | 35.0% |
| ! | TTTTGTAGTCGGGATAGTTT+CGG | + | chr2.4:22829777-22829796 | None:intergenic | 35.0% |
| !! | ACTTTTCAGGAAACTGATTG+GGG | + | chr2.4:22830269-22830288 | None:intergenic | 35.0% |
| !! | CAACTTTTCAGGAAACTGAT+TGG | + | chr2.4:22830271-22830290 | None:intergenic | 35.0% |
| !! | GATCAAAAGTTGAAGGTGTT+GGG | - | chr2.4:22830573-22830592 | MS.gene96031:CDS | 35.0% |
| !! | TTGATGATGAACTATGCTAC+CGG | - | chr2.4:22831128-22831147 | MS.gene96031:CDS | 35.0% |
| !!! | CGGTAATGAGGATGTTTTTT+GGG | + | chr2.4:22829711-22829730 | None:intergenic | 35.0% |
| !!! | GGTAATGAGGATGTTTTTTG+GGG | + | chr2.4:22829710-22829729 | None:intergenic | 35.0% |
| AACAGTAATCCAGTTTGTCG+AGG | + | chr2.4:22829807-22829826 | None:intergenic | 40.0% | |
| AAGTTAGCCCACTTGAAGTT+TGG | + | chr2.4:22831708-22831727 | None:intergenic | 40.0% | |
| AAGTTTGGAGACGATCTTGA+AGG | + | chr2.4:22829850-22829869 | None:intergenic | 40.0% | |
| AATTGTTGTCCTCGACAAAC+TGG | - | chr2.4:22829795-22829814 | MS.gene96031:CDS | 40.0% | |
| ACACGTGGAAACAATGTCTA+TGG | - | chr2.4:22830243-22830262 | MS.gene96031:intron | 40.0% | |
| ACATCTCAAGAATCTCGTTG+TGG | + | chr2.4:22831668-22831687 | None:intergenic | 40.0% | |
| AGAAGACACTCCTAATTTCG+CGG | - | chr2.4:22831208-22831227 | MS.gene96031:CDS | 40.0% | |
| AGAAGGCTTGAAGAAAACCA+TGG | - | chr2.4:22830620-22830639 | MS.gene96031:CDS | 40.0% | |
| ATGGCATATGGTAGGTCATA+TGG | - | chr2.4:22830204-22830223 | MS.gene96031:intron | 40.0% | |
| ATTGCCAAGAGGATGAACTT+TGG | + | chr2.4:22830297-22830316 | None:intergenic | 40.0% | |
| CCAATCAACATTAGGTCTTC+CGG | + | chr2.4:22831024-22831043 | None:intergenic | 40.0% | |
| CCCTTCACAAACTTGAAGTT+TGG | + | chr2.4:22829865-22829884 | None:intergenic | 40.0% | |
| CCGAAAATGTTAATGATGCC+TGG | - | chr2.4:22830702-22830721 | MS.gene96031:CDS | 40.0% | |
| CGTTGTTGGGACTTTAACAT+TGG | - | chr2.4:22831079-22831098 | MS.gene96031:CDS | 40.0% | |
| CTATTCCAAAACCAAGGCAA+TGG | - | chr2.4:22831238-22831257 | MS.gene96031:CDS | 40.0% | |
| GATTCCAAAGTTCATCCTCT+TGG | - | chr2.4:22830290-22830309 | MS.gene96031:intron | 40.0% | |
| GATTCGCACCAATCAACATT+AGG | + | chr2.4:22831032-22831051 | None:intergenic | 40.0% | |
| GGATGGAGAGACATTTCAAT+GGG | - | chr2.4:22830727-22830746 | MS.gene96031:CDS | 40.0% | |
| GGGAAATTGTGTGAGAAACA+AGG | - | chr2.4:22830894-22830913 | MS.gene96031:CDS | 40.0% | |
| GTATTGTGAAGATGTTGCAG+AGG | - | chr2.4:22830371-22830390 | MS.gene96031:CDS | 40.0% | |
| GTTGCAGAGTATGGATTTGT+CGG | + | chr2.4:22830159-22830178 | None:intergenic | 40.0% | |
| TAGAAAGAACCCGCGAAATT+AGG | + | chr2.4:22831221-22831240 | None:intergenic | 40.0% | |
| TATGGAAGAACTGGTTGGAT+AGG | - | chr2.4:22830861-22830880 | MS.gene96031:CDS | 40.0% | |
| TCCAAAACAGTCATGCTGTT+TGG | + | chr2.4:22831564-22831583 | None:intergenic | 40.0% | |
| TCTTGCAGCAACTATCACTT+TGG | + | chr2.4:22831748-22831767 | None:intergenic | 40.0% | |
| TGAAGTTCCAGATACCTCTT+AGG | + | chr2.4:22831626-22831645 | None:intergenic | 40.0% | |
| TGATCTATGGAAGAACTGGT+TGG | - | chr2.4:22830856-22830875 | MS.gene96031:CDS | 40.0% | |
| TGATGAGAAGGTAGTTGACA+AGG | + | chr2.4:22829906-22829925 | None:intergenic | 40.0% | |
| TTAGAAGCTTGCAAGGTAAC+TGG | - | chr2.4:22830036-22830055 | MS.gene96031:CDS | 40.0% | |
| TTTGTCGTAACGCGAAATCT+TGG | + | chr2.4:22831529-22831548 | None:intergenic | 40.0% | |
| ! | ACTCATGTCGACAACTCTTT+TGG | - | chr2.4:22829964-22829983 | MS.gene96031:CDS | 40.0% |
| ! | ATCTGGAACTTCACAAATCC+TGG | - | chr2.4:22831633-22831652 | MS.gene96031:CDS | 40.0% |
| ! | CGATCAAAAGTTGAAGGTGT+TGG | - | chr2.4:22830572-22830591 | MS.gene96031:CDS | 40.0% |
| ! | CGCCCTTTTCCATATTCATA+TGG | + | chr2.4:22830924-22830943 | None:intergenic | 40.0% |
| ! | TCCAAACAGCATGACTGTTT+TGG | - | chr2.4:22831560-22831579 | MS.gene96031:CDS | 40.0% |
| ! | TGAAATTGCGTGGATTGCTT+AGG | + | chr2.4:22831503-22831522 | None:intergenic | 40.0% |
| ! | TGATGATGAACTATGCTACC+GGG | - | chr2.4:22831129-22831148 | MS.gene96031:CDS | 40.0% |
| ! | TGGTAGGTCATATGGATTAC+CGG | - | chr2.4:22830212-22830231 | MS.gene96031:intron | 40.0% |
| !! | AAAAGTTGAAGGTGTTGGGT+TGG | - | chr2.4:22830577-22830596 | MS.gene96031:CDS | 40.0% |
| !! | ATCTTGGTGATGAAATTGCG+TGG | + | chr2.4:22831513-22831532 | None:intergenic | 40.0% |
| !! | ATGGTGATGGTTCAAATGTG+AGG | - | chr2.4:22830340-22830359 | MS.gene96031:CDS | 40.0% |
| !!! | CCGGTAATGAGGATGTTTTT+TGG | + | chr2.4:22829712-22829731 | None:intergenic | 40.0% |
| AAGAATCTCGTTGTGGCTCA+CGG | + | chr2.4:22831661-22831680 | None:intergenic | 45.0% | |
| AAGTCCCAACAACGTTGACA+CGG | + | chr2.4:22831073-22831092 | None:intergenic | 45.0% | |
| ACAGATGAAGACGCTGTTGT+TGG | - | chr2.4:22830108-22830127 | MS.gene96031:CDS | 45.0% | |
| AGACCTCATCAGTGCTTACA+TGG | + | chr2.4:22830080-22830099 | None:intergenic | 45.0% | |
| AGTTATCCTTCACAAGGGAG+AGG | - | chr2.4:22830401-22830420 | MS.gene96031:CDS | 45.0% | |
| ATAGTTTCGGATAAGCCGGT+TGG | + | chr2.4:22829764-22829783 | None:intergenic | 45.0% | |
| ATCCAGAAGGTTCAGGCATT+GGG | - | chr2.4:22831177-22831196 | MS.gene96031:CDS | 45.0% | |
| ATCGTACTCGAATATGCACC+CGG | + | chr2.4:22831150-22831169 | None:intergenic | 45.0% | |
| ATGGCAAAGAGGAACCTAAG+AGG | - | chr2.4:22831609-22831628 | MS.gene96031:CDS | 45.0% | |
| CCATACTCTGCAACAAAAGC+TGG | - | chr2.4:22830165-22830184 | MS.gene96031:intron | 45.0% | |
| CCGGAAGACCTAATGTTGAT+TGG | - | chr2.4:22831021-22831040 | MS.gene96031:CDS | 45.0% | |
| CGATAGACTCAGTGATGAGA+AGG | + | chr2.4:22829918-22829937 | None:intergenic | 45.0% | |
| GAAATGCTCGTCATGGCATA+TGG | - | chr2.4:22830192-22830211 | MS.gene96031:intron | 45.0% | |
| GAAGACACTCCTAATTTCGC+GGG | - | chr2.4:22831209-22831228 | MS.gene96031:CDS | 45.0% | |
| GAAGAGTTTGCAAACATCGG+TGG | + | chr2.4:22830481-22830500 | None:intergenic | 45.0% | |
| GAGACGATCTTGAAGGAATG+AGG | + | chr2.4:22829843-22829862 | None:intergenic | 45.0% | |
| GAGAGAACAACATGGGAAGA+AGG | - | chr2.4:22830603-22830622 | MS.gene96031:CDS | 45.0% | |
| GCTTGAAGAAAACCATGGAC+TGG | - | chr2.4:22830625-22830644 | MS.gene96031:CDS | 45.0% | |
| GGCAAAGTTCTTCCGATTCA+TGG | - | chr2.4:22830321-22830340 | MS.gene96031:CDS | 45.0% | |
| GGGATGGAGAGACATTTCAA+TGG | - | chr2.4:22830726-22830745 | MS.gene96031:CDS | 45.0% | |
| GTTCTTCCGATTCATGGTGA+TGG | - | chr2.4:22830327-22830346 | MS.gene96031:CDS | 45.0% | |
| TACGATGAAGCTCATCCAGA+AGG | - | chr2.4:22831164-22831183 | MS.gene96031:CDS | 45.0% | |
| TTCATCCTCTTGGCAATGCA+AGG | - | chr2.4:22830300-22830319 | MS.gene96031:intron | 45.0% | |
| TTGGTCGGAGAGAACAACAT+GGG | - | chr2.4:22830596-22830615 | MS.gene96031:CDS | 45.0% | |
| TTTCCACGTGTTGTGATCAC+CGG | + | chr2.4:22830234-22830253 | None:intergenic | 45.0% | |
| ! | CCAGCTTTTGTTGCAGAGTA+TGG | + | chr2.4:22830168-22830187 | None:intergenic | 45.0% |
| ! | GCTTACCATTGCCTTGGTTT+TGG | + | chr2.4:22831246-22831265 | None:intergenic | 45.0% |
| ! | TAGCTAGCTTACCATTGCCT+TGG | + | chr2.4:22831252-22831271 | None:intergenic | 45.0% |
| !! | AGAGGAACCTAAGAGGTATC+TGG | - | chr2.4:22831616-22831635 | MS.gene96031:CDS | 45.0% |
| !! | ATATGGAAAAGGGCGTCTTG+AGG | - | chr2.4:22830929-22830948 | MS.gene96031:CDS | 45.0% |
| !! | CATCCATGTAAGCACTGATG+AGG | - | chr2.4:22830074-22830093 | MS.gene96031:CDS | 45.0% |
| !! | GTAAGCACTGATGAGGTCTA+TGG | - | chr2.4:22830081-22830100 | MS.gene96031:CDS | 45.0% |
| !! | GTTGGATAGGTGGTTTGCTT+GGG | - | chr2.4:22830874-22830893 | MS.gene96031:CDS | 45.0% |
| AAATGTCTCTCCATCCCACC+AGG | + | chr2.4:22830723-22830742 | None:intergenic | 50.0% | |
| AACCCAATGCCTGAACCTTC+TGG | + | chr2.4:22831182-22831201 | None:intergenic | 50.0% | |
| ACCATCCGTGTCAACGTTGT+TGG | - | chr2.4:22831065-22831084 | MS.gene96031:CDS | 50.0% | |
| ATCCTTCACAAGGGAGAGGT+TGG | - | chr2.4:22830405-22830424 | MS.gene96031:CDS | 50.0% | |
| CATCCAGAAGGTTCAGGCAT+TGG | - | chr2.4:22831176-22831195 | MS.gene96031:CDS | 50.0% | |
| CCATCCGTGTCAACGTTGTT+GGG | - | chr2.4:22831066-22831085 | MS.gene96031:CDS | 50.0% | |
| CGGGATAGTTTCGGATAAGC+CGG | + | chr2.4:22829768-22829787 | None:intergenic | 50.0% | |
| CTTTGCCTTGCATTGCCAAG+AGG | + | chr2.4:22830308-22830327 | None:intergenic | 50.0% | |
| GAAGAGCCAGTGCTCTTTGT+AGG | + | chr2.4:22830813-22830832 | None:intergenic | 50.0% | |
| GAAGCTCATCCAGAAGGTTC+AGG | - | chr2.4:22831170-22831189 | MS.gene96031:CDS | 50.0% | |
| GGAAGAACTGGTTGGATAGG+TGG | - | chr2.4:22830864-22830883 | MS.gene96031:CDS | 50.0% | |
| GTTAATGATGCCTGGTGGGA+TGG | - | chr2.4:22830710-22830729 | MS.gene96031:CDS | 50.0% | |
| GTTGGTCGGAGAGAACAACA+TGG | - | chr2.4:22830595-22830614 | MS.gene96031:CDS | 50.0% | |
| TGAGGATCGTTCATCACTCG+TGG | - | chr2.4:22830947-22830966 | MS.gene96031:CDS | 50.0% | |
| TGCTCGTCATGGCATATGGT+AGG | - | chr2.4:22830196-22830215 | MS.gene96031:intron | 50.0% | |
| TGGAGCAGAAATGCTCGTCA+TGG | - | chr2.4:22830185-22830204 | MS.gene96031:intron | 50.0% | |
| TTACCGGTGATCACAACACG+TGG | - | chr2.4:22830228-22830247 | MS.gene96031:intron | 50.0% | |
| TTCAATGCAGCAGGTGTGAC+CGG | - | chr2.4:22831002-22831021 | MS.gene96031:CDS | 50.0% | |
| TTGCGTCTCATGTTGCCAAC+CGG | - | chr2.4:22829746-22829765 | MS.gene96031:CDS | 50.0% | |
| ! | GTTCCACCTACAAAGAGCAC+TGG | - | chr2.4:22830804-22830823 | MS.gene96031:CDS | 50.0% |
| !! | AGGTTCAGGCATTGGGTTCA+AGG | - | chr2.4:22831184-22831203 | MS.gene96031:CDS | 50.0% |
| !! | GGTTGGATAGGTGGTTTGCT+TGG | - | chr2.4:22830873-22830892 | MS.gene96031:CDS | 50.0% |
| !! | GTTGAAGGTGTTGGGTTGGT+CGG | - | chr2.4:22830581-22830600 | MS.gene96031:CDS | 50.0% |
| AATTGGTGGGGCGATGTGAG+TGG | - | chr2.4:22830663-22830682 | MS.gene96031:CDS | 55.0% | |
| CCCAACAACGTTGACACGGA+TGG | + | chr2.4:22831069-22831088 | None:intergenic | 55.0% | |
| CGCTGTTGTTGGAAACCACG+AGG | - | chr2.4:22830119-22830138 | MS.gene96031:CDS | 55.0% | |
| CTCACATCGCCCCACCAATT+AGG | + | chr2.4:22830663-22830682 | None:intergenic | 55.0% | |
| GAAGTAGCTGAGAAGCCTCG+TGG | + | chr2.4:22830137-22830156 | None:intergenic | 55.0% | |
| GAGCCAGTGCTCTTTGTAGG+TGG | + | chr2.4:22830810-22830829 | None:intergenic | 55.0% | |
| GTCCAACCTCTCCCTTGTGA+AGG | + | chr2.4:22830410-22830429 | None:intergenic | 55.0% | |
| ATCCAGCTGCCCCGGTAATG+AGG | + | chr2.4:22829723-22829742 | None:intergenic | 60.0% | |
| ATCCTCATTACCGGGGCAGC+TGG | - | chr2.4:22829718-22829737 | MS.gene96031:CDS | 60.0% | |
| CGCAATGAATCCAGCTGCCC+CGG | + | chr2.4:22829731-22829750 | None:intergenic | 60.0% | |
| TCGTTGTGGCTCACGGCACC+AGG | + | chr2.4:22831654-22831673 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 22829694 | 22831878 | 22829694 | ID=MS.gene96031 |
| chr2.4 | mRNA | 22829694 | 22831878 | 22829694 | ID=MS.gene96031.t1;Parent=MS.gene96031 |
| chr2.4 | exon | 22830313 | 22831878 | 22830313 | ID=MS.gene96031.t1.exon1;Parent=MS.gene96031.t1 |
| chr2.4 | CDS | 22830313 | 22831878 | 22830313 | ID=cds.MS.gene96031.t1;Parent=MS.gene96031.t1 |
| chr2.4 | exon | 22829694 | 22830140 | 22829694 | ID=MS.gene96031.t1.exon2;Parent=MS.gene96031.t1 |
| chr2.4 | CDS | 22829694 | 22830140 | 22829694 | ID=cds.MS.gene96031.t1;Parent=MS.gene96031.t1 |
| Gene Sequence |
| Protein sequence |
