Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96349.t1 | XP_003610060.1 | 97.4 | 389 | 10 | 0 | 4 | 392 | 6 | 394 | 1.60E-220 | 775 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96349.t1 | Q9SW00 | 54.5 | 391 | 167 | 5 | 1 | 390 | 1 | 381 | 4.7e-115 | 416.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96349.t1 | G7JUB2 | 97.4 | 389 | 10 | 0 | 4 | 392 | 8 | 396 | 1.2e-220 | 775.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032779 | MS.gene96349 | PPI |
| MS.gene96349 | MS.gene49595 | PPI |
| MS.gene96349 | MS.gene066288 | PPI |
| MS.gene96349 | MS.gene99026 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96349.t1 | MTR_4g127490 | 96.684 | 392 | 13 | 0 | 1 | 392 | 5 | 396 | 0.0 | 784 |
| MS.gene96349.t1 | MTR_4g127490 | 97.429 | 389 | 10 | 0 | 4 | 392 | 6 | 394 | 0.0 | 783 |
| MS.gene96349.t1 | MTR_2g037790 | 69.610 | 385 | 111 | 3 | 7 | 391 | 8 | 386 | 0.0 | 547 |
| MS.gene96349.t1 | MTR_2g037790 | 69.610 | 385 | 111 | 3 | 7 | 391 | 5 | 383 | 0.0 | 546 |
| MS.gene96349.t1 | MTR_2g037770 | 67.895 | 380 | 117 | 3 | 12 | 391 | 7 | 381 | 0.0 | 522 |
| MS.gene96349.t1 | MTR_4g127510 | 62.105 | 380 | 137 | 5 | 12 | 389 | 5 | 379 | 8.28e-168 | 474 |
| MS.gene96349.t1 | MTR_2g037770 | 71.959 | 296 | 80 | 2 | 12 | 307 | 7 | 299 | 1.74e-150 | 428 |
| MS.gene96349.t1 | MTR_2g037770 | 71.959 | 296 | 80 | 2 | 12 | 307 | 8 | 300 | 2.03e-150 | 428 |
| MS.gene96349.t1 | MTR_2g037770 | 72.348 | 264 | 70 | 2 | 12 | 275 | 7 | 267 | 8.70e-134 | 384 |
| MS.gene96349.t1 | MTR_4g064110 | 24.925 | 333 | 219 | 11 | 51 | 363 | 79 | 400 | 9.38e-17 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96349.t1 | AT4G25850 | 54.476 | 391 | 167 | 5 | 1 | 390 | 1 | 381 | 1.09e-146 | 421 |
| MS.gene96349.t1 | AT4G25850 | 54.476 | 391 | 167 | 5 | 1 | 390 | 103 | 483 | 1.02e-144 | 420 |
| MS.gene96349.t1 | AT5G57240 | 53.525 | 383 | 167 | 5 | 12 | 392 | 5 | 378 | 1.68e-144 | 415 |
| MS.gene96349.t1 | AT5G57240 | 53.525 | 383 | 167 | 5 | 12 | 392 | 5 | 378 | 1.68e-144 | 415 |
| MS.gene96349.t1 | AT5G57240 | 53.525 | 383 | 167 | 5 | 12 | 392 | 5 | 378 | 1.68e-144 | 415 |
| MS.gene96349.t1 | AT4G25860 | 52.196 | 387 | 176 | 4 | 5 | 390 | 4 | 382 | 2.17e-139 | 402 |
| MS.gene96349.t1 | AT4G25860 | 52.632 | 380 | 171 | 4 | 12 | 390 | 5 | 376 | 7.89e-139 | 401 |
| MS.gene96349.t1 | AT5G57240 | 50.245 | 408 | 167 | 6 | 12 | 392 | 5 | 403 | 1.76e-138 | 401 |
| MS.gene96349.t1 | AT5G57240 | 50.245 | 408 | 167 | 6 | 12 | 392 | 5 | 403 | 1.76e-138 | 401 |
| MS.gene96349.t1 | AT4G25850 | 57.455 | 275 | 107 | 5 | 1 | 273 | 1 | 267 | 7.10e-104 | 308 |
| MS.gene96349.t1 | AT5G59420 | 24.179 | 335 | 219 | 11 | 51 | 363 | 78 | 399 | 9.82e-14 | 72.8 |
| MS.gene96349.t1 | AT5G02100 | 23.724 | 333 | 223 | 11 | 51 | 363 | 51 | 372 | 1.37e-13 | 72.4 |
| MS.gene96349.t1 | AT5G02100 | 23.724 | 333 | 223 | 11 | 51 | 363 | 78 | 399 | 2.13e-13 | 72.0 |
| MS.gene96349.t1 | AT5G02100 | 29.586 | 169 | 110 | 5 | 51 | 217 | 78 | 239 | 7.55e-13 | 69.3 |
Find 108 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTGAATCAGCTCTTATT+TGG | 0.134175 | 8.4:-6991904 | MS.gene96349:CDS |
| TAGCATTGAAGCTGTGATTT+TGG | 0.181358 | 8.4:+6993255 | None:intergenic |
| TGGCTTTGTCAGAACAATTA+TGG | 0.224454 | 8.4:+6993664 | None:intergenic |
| CTCCCAGTCATTGCTAATAA+TGG | 0.230830 | 8.4:+6991865 | None:intergenic |
| ACCACACGTCCTACATCTTT+TGG | 0.266880 | 8.4:-6993123 | MS.gene96349:CDS |
| AACTGAATCAGCTCTTATTT+GGG | 0.293352 | 8.4:-6991903 | MS.gene96349:CDS |
| GCTCCTTATAATCCCATTCT+TGG | 0.296392 | 8.4:-6993096 | MS.gene96349:CDS |
| GATGCAAAAGAAGTCATTTC+AGG | 0.299497 | 8.4:-6992086 | MS.gene96349:CDS |
| GGGAATAGTAAGTTGATTAA+AGG | 0.299802 | 8.4:-6992393 | MS.gene96349:CDS |
| CTGTTGTTGATCAGGGTGTT+TGG | 0.313493 | 8.4:-6991928 | MS.gene96349:intron |
| ATTAGAATTCTTCCAGTTCC+AGG | 0.322110 | 8.4:-6992513 | MS.gene96349:CDS |
| GGGTTGGGATTGTTAATATA+CGG | 0.332141 | 8.4:-6992482 | MS.gene96349:CDS |
| GAAACTTTGGAACAGCTTGC+TGG | 0.333697 | 8.4:+6992953 | None:intergenic |
| AGCAGGTACCCATGTATTAA+TGG | 0.333978 | 8.4:+6991700 | None:intergenic |
| GGCTTTGTCAGAACAATTAT+GGG | 0.356535 | 8.4:+6993665 | None:intergenic |
| TTCCAGGAGTTAGTTGGGTT+GGG | 0.357671 | 8.4:-6992497 | MS.gene96349:CDS |
| TCTCCAAGAATGGGATTATA+AGG | 0.360041 | 8.4:+6993093 | None:intergenic |
| AGGAAAACATTGAAATGATA+TGG | 0.367856 | 8.4:-6992978 | MS.gene96349:CDS |
| AGCAGATCTCACTAACTTAC+AGG | 0.371004 | 8.4:-6993540 | MS.gene96349:intron |
| TCCAGTTCCAGGAGTTAGTT+GGG | 0.392005 | 8.4:-6992502 | MS.gene96349:CDS |
| AAGCTGAAGTTCATGGCAAA+AGG | 0.393826 | 8.4:-6992593 | MS.gene96349:CDS |
| GTTCTAAAACTCAGAAATCA+TGG | 0.418453 | 8.4:-6992570 | MS.gene96349:CDS |
| GGAATAGTAAGTTGATTAAA+GGG | 0.418791 | 8.4:-6992392 | MS.gene96349:CDS |
| AGCATTGAAGCTGAAGTTCA+TGG | 0.426779 | 8.4:-6992600 | MS.gene96349:CDS |
| TTTGAGATACCGCGAAACTT+TGG | 0.430109 | 8.4:+6992940 | None:intergenic |
| TTCCAGTTCCAGGAGTTAGT+TGG | 0.435182 | 8.4:-6992503 | MS.gene96349:CDS |
| ACCTCTGCATCCTTGACAAT+GGG | 0.436791 | 8.4:+6992053 | None:intergenic |
| GTTCCAGGAGTTAGTTGGGT+TGG | 0.438089 | 8.4:-6992498 | MS.gene96349:CDS |
| GATTCAACTTCCAATGAGAA+TGG | 0.439825 | 8.4:+6993644 | None:intergenic |
| CTTGTCATCTGTTGCGTGGA+GGG | 0.441844 | 8.4:+6992999 | None:intergenic |
| TATATGACATTGATGGTCAA+TGG | 0.448483 | 8.4:-6992338 | MS.gene96349:CDS |
| GCAGGTACCCATGTATTAAT+GGG | 0.452463 | 8.4:+6991701 | None:intergenic |
| TCTGACAAAGCCATTCTCAT+TGG | 0.453093 | 8.4:-6993654 | MS.gene96349:CDS |
| ACCCAACTAACTCCTGGAAC+TGG | 0.454137 | 8.4:+6992501 | None:intergenic |
| TAAGTTAGTGAGATCTGCTC+CGG | 0.454449 | 8.4:+6993544 | None:intergenic |
| TCAGATTCAGAACCGAGTTA+TGG | 0.462093 | 8.4:-6993623 | MS.gene96349:CDS |
| GGCAGATACCGGAGGATTGG+TGG | 0.462672 | 8.4:+6993020 | None:intergenic |
| AATGTACTATATGACATTGA+TGG | 0.462851 | 8.4:-6992345 | MS.gene96349:CDS |
| AAGCCATTATTAGCAATGAC+TGG | 0.469518 | 8.4:-6991868 | MS.gene96349:CDS |
| ATCCCAACCCAACTAACTCC+TGG | 0.481594 | 8.4:+6992495 | None:intergenic |
| CCTGCTCGAGTAGGACGTTA+AGG | 0.481699 | 8.4:+6993046 | None:intergenic |
| AATATACGGTGCAAAGAGAC+TGG | 0.484332 | 8.4:-6992468 | MS.gene96349:CDS |
| ATGGTGTGTCTCTCCAAGAA+TGG | 0.490659 | 8.4:+6993083 | None:intergenic |
| ATATGACATTGATGGTCAAT+GGG | 0.491161 | 8.4:-6992337 | MS.gene96349:CDS |
| TTACTAAAGGCAACTACTGA+AGG | 0.491965 | 8.4:-6993698 | MS.gene96349:intron |
| TCCAAGTCCAAGAAAAGAAT+AGG | 0.500631 | 8.4:+6992416 | None:intergenic |
| GAGGGCAGATACCGGAGGAT+TGG | 0.501864 | 8.4:+6993017 | None:intergenic |
| TGGTGTGTCTCTCCAAGAAT+GGG | 0.506010 | 8.4:+6993084 | None:intergenic |
| ATGCAAAAGAAGTCATTTCA+GGG | 0.510894 | 8.4:-6992085 | MS.gene96349:CDS |
| ATTGTTCACCCATTAATACA+TGG | 0.517678 | 8.4:-6991709 | MS.gene96349:CDS |
| AGGAGTCCAACGTTCCCCTC+TGG | 0.519515 | 8.4:+6991778 | None:intergenic |
| AGCTGAAGTTCATGGCAAAA+GGG | 0.523135 | 8.4:-6992592 | MS.gene96349:CDS |
| CAAGCTGTTCCAAAGTTTCG+CGG | 0.524100 | 8.4:-6992949 | MS.gene96349:intron |
| GTTGCGTGGAGGGCAGATAC+CGG | 0.524211 | 8.4:+6993009 | None:intergenic |
| CAACAATGAGCAGAGTCCAC+TGG | 0.527579 | 8.4:-6993181 | MS.gene96349:CDS |
| AACAAGCGACGTATAAGATT+AGG | 0.528065 | 8.4:+6993590 | None:intergenic |
| TTCTAAAACTCAGAAATCAT+GGG | 0.532310 | 8.4:-6992569 | MS.gene96349:CDS |
| GCAGGTTTCCACCAATCCTC+CGG | 0.534023 | 8.4:-6993028 | MS.gene96349:CDS |
| GACGTATAAGATTAGGTGCT+CGG | 0.534128 | 8.4:+6993597 | None:intergenic |
| CCTTAACGTCCTACTCGAGC+AGG | 0.539340 | 8.4:-6993046 | MS.gene96349:CDS |
| CCTTGTCATCTGTTGCGTGG+AGG | 0.541491 | 8.4:+6992998 | None:intergenic |
| TAGGACGTTAAGGTTACCCT+TGG | 0.541780 | 8.4:+6993056 | None:intergenic |
| GGGGATATGATAGGTGCAGC+AGG | 0.547965 | 8.4:+6991683 | None:intergenic |
| TAAGGTTACCCTTGGAAACA+TGG | 0.549476 | 8.4:+6993064 | None:intergenic |
| ACATTGATGGTCAATGGGAT+AGG | 0.553890 | 8.4:-6992332 | MS.gene96349:intron |
| GTGTCTTACAGTAATGAAAG+TGG | 0.561785 | 8.4:-6991743 | MS.gene96349:CDS |
| AGAGACACACCATGTTTCCA+AGG | 0.568528 | 8.4:-6993073 | MS.gene96349:CDS |
| GGAGCAACTCCAAAAGATGT+AGG | 0.569955 | 8.4:+6993114 | None:intergenic |
| TTACAGTAATGAAAGTGGGT+TGG | 0.581773 | 8.4:-6991738 | MS.gene96349:CDS |
| CATATGAAATGAATTGTCCT+CGG | 0.582471 | 8.4:-6992542 | MS.gene96349:CDS |
| TACCTCTGCATCCTTGACAA+TGG | 0.586448 | 8.4:+6992052 | None:intergenic |
| ATGAGCAGAGTCCACTGGAA+AGG | 0.592131 | 8.4:-6993176 | MS.gene96349:CDS |
| AAATCACAGCTTCAATGCTA+CGG | 0.596960 | 8.4:-6993252 | MS.gene96349:CDS |
| AAAGCAAAAGAAGCAAAGCA+AGG | 0.598716 | 8.4:-6991842 | MS.gene96349:CDS |
| AAAAGAATAGGATGATTCGT+AGG | 0.600634 | 8.4:+6992428 | None:intergenic |
| TACTAAAGGCAACTACTGAA+GGG | 0.600949 | 8.4:-6993697 | MS.gene96349:intron |
| TTGTTCACCCATTAATACAT+GGG | 0.606408 | 8.4:-6991708 | MS.gene96349:CDS |
| GGTTCACATCTGTGGTAGCG+TGG | 0.606610 | 8.4:-6993155 | MS.gene96349:CDS |
| ACTGGAAAGGTTCACATCTG+TGG | 0.609418 | 8.4:-6993163 | MS.gene96349:CDS |
| GAGACACCAGAGGGGAACGT+TGG | 0.611769 | 8.4:-6991784 | MS.gene96349:CDS |
| TTGAAAGAAAGAGACACCAG+AGG | 0.616272 | 8.4:-6991794 | MS.gene96349:CDS |
| TTTGGGAAATAAAATAGAGG+CGG | 0.617018 | 8.4:+6993273 | None:intergenic |
| TCCCATTGTCAAGGATGCAG+AGG | 0.618765 | 8.4:-6992054 | MS.gene96349:intron |
| CCTCCACGCAACAGATGACA+AGG | 0.623006 | 8.4:-6992998 | MS.gene96349:CDS |
| AGCCATTATTAGCAATGACT+GGG | 0.623574 | 8.4:-6991867 | MS.gene96349:CDS |
| ACTGAATCAGCTCTTATTTG+GGG | 0.624865 | 8.4:-6991902 | MS.gene96349:CDS |
| AAAAGAAGCAAAGCAAGGCG+TGG | 0.625738 | 8.4:-6991837 | MS.gene96349:CDS |
| GCTCAAAGCTCCCATTGTCA+AGG | 0.627873 | 8.4:-6992063 | MS.gene96349:CDS |
| TGGTGGAAACCTGCTCGAGT+AGG | 0.629646 | 8.4:+6993037 | None:intergenic |
| AAGTTAGTGAGATCTGCTCC+GGG | 0.630886 | 8.4:+6993545 | None:intergenic |
| AGAAGCAAAGCAAGGCGTGG+AGG | 0.633160 | 8.4:-6991834 | MS.gene96349:CDS |
| TCCAAAAGATGTAGGACGTG+TGG | 0.636254 | 8.4:+6993122 | None:intergenic |
| TGAAAGAAAGAGACACCAGA+GGG | 0.638284 | 8.4:-6991793 | MS.gene96349:CDS |
| ATATAGTACATTGAATGATG+AGG | 0.640551 | 8.4:+6992356 | None:intergenic |
| CGTAGGATAACTCAGCCACA+AGG | 0.646570 | 8.4:+6992445 | None:intergenic |
| TTTCCTTGTCATCTGTTGCG+TGG | 0.647389 | 8.4:+6992995 | None:intergenic |
| AGAATTCTAATTGAGAGCCG+AGG | 0.648326 | 8.4:+6992525 | None:intergenic |
| TCTAAAACTCAGAAATCATG+GGG | 0.654639 | 8.4:-6992568 | MS.gene96349:CDS |
| TTACAGGACTGTTAACGTGA+AGG | 0.654814 | 8.4:-6992141 | MS.gene96349:intron |
| ACGTGAAGGATACAAACAGT+GGG | 0.656469 | 8.4:-6992127 | MS.gene96349:CDS |
| TGTCTTACAGTAATGAAAGT+GGG | 0.672570 | 8.4:-6991742 | MS.gene96349:CDS |
| GCGTGGAGGGCAGATACCGG+AGG | 0.675420 | 8.4:+6993012 | None:intergenic |
| GTGCAAAGAGACTGGCCTTG+TGG | 0.675498 | 8.4:-6992460 | MS.gene96349:CDS |
| GAGACACACCATGTTTCCAA+GGG | 0.680569 | 8.4:-6993072 | MS.gene96349:CDS |
| GGTGCTCGGTAACCATAACT+CGG | 0.684787 | 8.4:+6993611 | None:intergenic |
| AACGTGAAGGATACAAACAG+TGG | 0.684966 | 8.4:-6992128 | MS.gene96349:CDS |
| ACAGATGTGAACCTTTCCAG+TGG | 0.686752 | 8.4:+6993165 | None:intergenic |
| GAAAGAAAGAGACACCAGAG+GGG | 0.761071 | 8.4:-6991792 | MS.gene96349:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTGATATATGTATTAC+AGG | - | chr8.4:6993454-6993473 | MS.gene96349:intron | 15.0% |
| !! | GCACAATATTATAAAATATA+CGG | + | chr8.4:6992221-6992240 | None:intergenic | 15.0% |
| !! | TATTAGACTCAAATATATAT+TGG | + | chr8.4:6992912-6992931 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAGATGAGAAAC+AGG | + | chr8.4:6991701-6991720 | None:intergenic | 20.0% |
| !! | AAAAAAAAAGATGAGAAACA+GGG | + | chr8.4:6991700-6991719 | None:intergenic | 20.0% |
| !! | AGTTCTTAAAAGAACAATAT+TGG | - | chr8.4:6993600-6993619 | MS.gene96349:CDS | 20.0% |
| !! | ATGAAATTGACAATATAATG+AGG | + | chr8.4:6992713-6992732 | None:intergenic | 20.0% |
| !! | TTCATTACAAAGAAAATGAA+AGG | + | chr8.4:6993341-6993360 | None:intergenic | 20.0% |
| !!! | AGAAAATGAAAGGTATAATA+TGG | + | chr8.4:6993331-6993350 | None:intergenic | 20.0% |
| !!! | AGTAAATTTCAAGTTGTAAA+TGG | - | chr8.4:6992967-6992986 | MS.gene96349:CDS | 20.0% |
| !!! | CATTTTCTTTGTAATGAAAT+CGG | - | chr8.4:6993343-6993362 | MS.gene96349:intron | 20.0% |
| !!! | GTTTTGTTGTTTTAATTAAG+TGG | - | chr8.4:6993628-6993647 | MS.gene96349:CDS | 20.0% |
| ! | AATGTACTATATGACATTGA+TGG | - | chr8.4:6993266-6993285 | MS.gene96349:CDS | 25.0% |
| ! | AGGAAAACATTGAAATGATA+TGG | - | chr8.4:6992633-6992652 | MS.gene96349:intron | 25.0% |
| ! | ATATAGTACATTGAATGATG+AGG | + | chr8.4:6993258-6993277 | None:intergenic | 25.0% |
| ! | GACTCAAATATATATTGGAT+AGG | + | chr8.4:6992907-6992926 | None:intergenic | 25.0% |
| ! | TAAGACACCAAAAAATTCTT+AGG | + | chr8.4:6993856-6993875 | None:intergenic | 25.0% |
| ! | TGTAGAAACTAATTTAAGCT+GGG | - | chr8.4:6991865-6991884 | MS.gene96349:CDS | 25.0% |
| ! | TTCTACTCTTTAACCAATTA+CGG | - | chr8.4:6992114-6992133 | MS.gene96349:CDS | 25.0% |
| !! | ACTTGTTTAATGCTCTTTTT+GGG | - | chr8.4:6991797-6991816 | MS.gene96349:CDS | 25.0% |
| !! | CGATAGACTAGATAATTTTT+AGG | + | chr8.4:6992181-6992200 | None:intergenic | 25.0% |
| !! | TACTTGTTTAATGCTCTTTT+TGG | - | chr8.4:6991796-6991815 | MS.gene96349:CDS | 25.0% |
| !!! | AAGTGGCTTGTTAATTTTAT+TGG | - | chr8.4:6993645-6993664 | MS.gene96349:CDS | 25.0% |
| !!! | CATCTTTTTTTTTTCTTCCT+TGG | - | chr8.4:6991707-6991726 | MS.gene96349:CDS | 25.0% |
| !!! | GATTTTGGGAAATAAAATAG+AGG | + | chr8.4:6992344-6992363 | None:intergenic | 25.0% |
| !!! | GGAATAGTAAGTTGATTAAA+GGG | - | chr8.4:6993219-6993238 | MS.gene96349:CDS | 25.0% |
| !!! | TTCTAAAACTCAGAAATCAT+GGG | - | chr8.4:6993042-6993061 | MS.gene96349:CDS | 25.0% |
| AAAAGAATAGGATGATTCGT+AGG | + | chr8.4:6993186-6993205 | None:intergenic | 30.0% | |
| AAACTGAATCAGCTCTTATT+TGG | - | chr8.4:6993707-6993726 | MS.gene96349:intron | 30.0% | |
| AATGCTTGTACCTAAAGTAA+AGG | + | chr8.4:6992997-6993016 | None:intergenic | 30.0% | |
| AGTTTATGCAAATTGAGTGT+TGG | + | chr8.4:6991834-6991853 | None:intergenic | 30.0% | |
| ATGCAAAAGAAGTCATTTCA+GGG | - | chr8.4:6993526-6993545 | MS.gene96349:intron | 30.0% | |
| ATGCTTGTACCTAAAGTAAA+GGG | + | chr8.4:6992996-6993015 | None:intergenic | 30.0% | |
| ATTGTTCACCCATTAATACA+TGG | - | chr8.4:6993902-6993921 | MS.gene96349:intron | 30.0% | |
| CATATGAAATGAATTGTCCT+CGG | - | chr8.4:6993069-6993088 | MS.gene96349:CDS | 30.0% | |
| CTGTAGAAACTAATTTAAGC+TGG | - | chr8.4:6991864-6991883 | MS.gene96349:CDS | 30.0% | |
| TAAAGAGTAGAAGTGAAAGA+GGG | + | chr8.4:6992106-6992125 | None:intergenic | 30.0% | |
| TATAAAGTAGATATGCCTCA+AGG | + | chr8.4:6992794-6992813 | None:intergenic | 30.0% | |
| TATAATATTGTGCTCACACT+AGG | - | chr8.4:6992228-6992247 | MS.gene96349:intron | 30.0% | |
| TGTCTTACAGTAATGAAAGT+GGG | - | chr8.4:6993869-6993888 | MS.gene96349:intron | 30.0% | |
| TTAAAGAGTAGAAGTGAAAG+AGG | + | chr8.4:6992107-6992126 | None:intergenic | 30.0% | |
| TTGTTCACCCATTAATACAT+GGG | - | chr8.4:6993903-6993922 | MS.gene96349:intron | 30.0% | |
| TTTGGGAAATAAAATAGAGG+CGG | + | chr8.4:6992341-6992360 | None:intergenic | 30.0% | |
| ! | AACTGAATCAGCTCTTATTT+GGG | - | chr8.4:6993708-6993727 | MS.gene96349:intron | 30.0% |
| ! | AAGTACTGTACTACAGTATA+AGG | + | chr8.4:6991781-6991800 | None:intergenic | 30.0% |
| ! | ATATGACATTGATGGTCAAT+GGG | - | chr8.4:6993274-6993293 | MS.gene96349:CDS | 30.0% |
| ! | CAGCTTAAATTAGTTTCTAC+AGG | + | chr8.4:6991866-6991885 | None:intergenic | 30.0% |
| ! | GAATCATCCTATTCTTTTCT+TGG | - | chr8.4:6993188-6993207 | MS.gene96349:CDS | 30.0% |
| ! | TATATGACATTGATGGTCAA+TGG | - | chr8.4:6993273-6993292 | MS.gene96349:CDS | 30.0% |
| ! | TCTAAAACTCAGAAATCATG+GGG | - | chr8.4:6993043-6993062 | MS.gene96349:CDS | 30.0% |
| !! | GGGAATAGTAAGTTGATTAA+AGG | - | chr8.4:6993218-6993237 | MS.gene96349:CDS | 30.0% |
| !! | GTTCTAAAACTCAGAAATCA+TGG | - | chr8.4:6993041-6993060 | MS.gene96349:CDS | 30.0% |
| !!! | TTGGACTCCTAAGAATTTTT+TGG | - | chr8.4:6993846-6993865 | MS.gene96349:intron | 30.0% |
| AAAGCAAAAGAAGCAAAGCA+AGG | - | chr8.4:6993769-6993788 | MS.gene96349:intron | 35.0% | |
| AAATCACAGCTTCAATGCTA+CGG | - | chr8.4:6992359-6992378 | MS.gene96349:CDS | 35.0% | |
| AAATGGTGTCCCTTTACTTT+AGG | - | chr8.4:6992984-6993003 | MS.gene96349:CDS | 35.0% | |
| AACAAGCGACGTATAAGATT+AGG | + | chr8.4:6992024-6992043 | None:intergenic | 35.0% | |
| AAGCCATTATTAGCAATGAC+TGG | - | chr8.4:6993743-6993762 | MS.gene96349:intron | 35.0% | |
| ACTAGCTAATCATTCACTAG+CGG | - | chr8.4:6993386-6993405 | MS.gene96349:intron | 35.0% | |
| AGCCATTATTAGCAATGACT+GGG | - | chr8.4:6993744-6993763 | MS.gene96349:intron | 35.0% | |
| ATTAGAATTCTTCCAGTTCC+AGG | - | chr8.4:6993098-6993117 | MS.gene96349:CDS | 35.0% | |
| CATTAAAAACATTCGCCTTG+AGG | - | chr8.4:6992776-6992795 | MS.gene96349:intron | 35.0% | |
| GATGCAAAAGAAGTCATTTC+AGG | - | chr8.4:6993525-6993544 | MS.gene96349:intron | 35.0% | |
| GATTCAACTTCCAATGAGAA+TGG | + | chr8.4:6991970-6991989 | None:intergenic | 35.0% | |
| GGGTTGGGATTGTTAATATA+CGG | - | chr8.4:6993129-6993148 | MS.gene96349:CDS | 35.0% | |
| GTCAATTTCATATACGCTGA+CGG | - | chr8.4:6992722-6992741 | MS.gene96349:intron | 35.0% | |
| GTGTCTTACAGTAATGAAAG+TGG | - | chr8.4:6993868-6993887 | MS.gene96349:intron | 35.0% | |
| TACTAAAGGCAACTACTGAA+GGG | - | chr8.4:6991914-6991933 | MS.gene96349:CDS | 35.0% | |
| TCCAAGTCCAAGAAAAGAAT+AGG | + | chr8.4:6993198-6993217 | None:intergenic | 35.0% | |
| TCTCCAAGAATGGGATTATA+AGG | + | chr8.4:6992521-6992540 | None:intergenic | 35.0% | |
| TGAGATTCTGTTGTTGATCA+GGG | - | chr8.4:6993676-6993695 | MS.gene96349:CDS | 35.0% | |
| TGGAAATTAACAAGTGACCT+TGG | - | chr8.4:6992295-6992314 | MS.gene96349:intron | 35.0% | |
| TTACAGTAATGAAAGTGGGT+TGG | - | chr8.4:6993873-6993892 | MS.gene96349:intron | 35.0% | |
| TTACTAAAGGCAACTACTGA+AGG | - | chr8.4:6991913-6991932 | MS.gene96349:CDS | 35.0% | |
| TTACTTAAAAATGTGCGACC+CGG | - | chr8.4:6992048-6992067 | MS.gene96349:intron | 35.0% | |
| TTTAGGCATAAAGCACAGAT+TGG | + | chr8.4:6992164-6992183 | None:intergenic | 35.0% | |
| ! | ACCGTTCTTTATGCTTCTTT+TGG | - | chr8.4:6991737-6991756 | MS.gene96349:CDS | 35.0% |
| ! | ACTGAATCAGCTCTTATTTG+GGG | - | chr8.4:6993709-6993728 | MS.gene96349:intron | 35.0% |
| ! | AGAAGCATAAAGAACGGTAT+TGG | + | chr8.4:6991735-6991754 | None:intergenic | 35.0% |
| ! | ATTCTTTTCTTGGACTTGGA+GGG | - | chr8.4:6993198-6993217 | MS.gene96349:CDS | 35.0% |
| ! | CCCAAAAGAAGCATAAAGAA+CGG | + | chr8.4:6991741-6991760 | None:intergenic | 35.0% |
| ! | CCGTTCTTTATGCTTCTTTT+GGG | - | chr8.4:6991738-6991757 | MS.gene96349:CDS | 35.0% |
| ! | GAAAGGTATAATATGGTGTG+AGG | + | chr8.4:6993324-6993343 | None:intergenic | 35.0% |
| ! | GGCTTTGTCAGAACAATTAT+GGG | + | chr8.4:6991949-6991968 | None:intergenic | 35.0% |
| ! | TATTCTTTTCTTGGACTTGG+AGG | - | chr8.4:6993197-6993216 | MS.gene96349:CDS | 35.0% |
| ! | TCCTATTCTTTTCTTGGACT+TGG | - | chr8.4:6993194-6993213 | MS.gene96349:CDS | 35.0% |
| !! | AGCATTGAAGCTGTGATTTT+GGG | + | chr8.4:6992358-6992377 | None:intergenic | 35.0% |
| !! | TAGCATTGAAGCTGTGATTT+TGG | + | chr8.4:6992359-6992378 | None:intergenic | 35.0% |
| !! | TGGCTTTGTCAGAACAATTA+TGG | + | chr8.4:6991950-6991969 | None:intergenic | 35.0% |
| AAAAGATGAGAAACAGGGAG+AGG | + | chr8.4:6991695-6991714 | None:intergenic | 40.0% | |
| AACGTGAAGGATACAAACAG+TGG | - | chr8.4:6993483-6993502 | MS.gene96349:intron | 40.0% | |
| AAGCTGAAGTTCATGGCAAA+AGG | - | chr8.4:6993018-6993037 | MS.gene96349:CDS | 40.0% | |
| AATATACGGTGCAAAGAGAC+TGG | - | chr8.4:6993143-6993162 | MS.gene96349:CDS | 40.0% | |
| AATATGGTGTGAGGTGATGA+GGG | + | chr8.4:6993315-6993334 | None:intergenic | 40.0% | |
| ACGTGAAGGATACAAACAGT+GGG | - | chr8.4:6993484-6993503 | MS.gene96349:intron | 40.0% | |
| AGAATTCTAATTGAGAGCCG+AGG | + | chr8.4:6993089-6993108 | None:intergenic | 40.0% | |
| AGCAGATCTCACTAACTTAC+AGG | - | chr8.4:6992071-6992090 | MS.gene96349:CDS | 40.0% | |
| AGCAGGTACCCATGTATTAA+TGG | + | chr8.4:6993914-6993933 | None:intergenic | 40.0% | |
| AGCTGAAGTTCATGGCAAAA+GGG | - | chr8.4:6993019-6993038 | MS.gene96349:CDS | 40.0% | |
| CAATGCGTGTATTAGACAGA+CGG | + | chr8.4:6992277-6992296 | None:intergenic | 40.0% | |
| CTCCCAGTCATTGCTAATAA+TGG | + | chr8.4:6993749-6993768 | None:intergenic | 40.0% | |
| CTGAGATTCTGTTGTTGATC+AGG | - | chr8.4:6993675-6993694 | MS.gene96349:CDS | 40.0% | |
| GACGTATAAGATTAGGTGCT+CGG | + | chr8.4:6992017-6992036 | None:intergenic | 40.0% | |
| GAGTTTCAACCAAATCACAG+TGG | + | chr8.4:6992142-6992161 | None:intergenic | 40.0% | |
| GCAGGTACCCATGTATTAAT+GGG | + | chr8.4:6993913-6993932 | None:intergenic | 40.0% | |
| GCGGGCTTAACTATTACTAA+AGG | - | chr8.4:6991900-6991919 | MS.gene96349:CDS | 40.0% | |
| GCTCCTTATAATCCCATTCT+TGG | - | chr8.4:6992515-6992534 | MS.gene96349:CDS | 40.0% | |
| TAAGGTTACCCTTGGAAACA+TGG | + | chr8.4:6992550-6992569 | None:intergenic | 40.0% | |
| TAAGTTAGTGAGATCTGCTC+CGG | + | chr8.4:6992070-6992089 | None:intergenic | 40.0% | |
| TAATATGGTGTGAGGTGATG+AGG | + | chr8.4:6993316-6993335 | None:intergenic | 40.0% | |
| TATTGTGCTCACACTAGGAT+AGG | - | chr8.4:6992233-6992252 | MS.gene96349:intron | 40.0% | |
| TCAGATTCAGAACCGAGTTA+TGG | - | chr8.4:6991988-6992007 | MS.gene96349:intron | 40.0% | |
| TCTGACAAAGCCATTCTCAT+TGG | - | chr8.4:6991957-6991976 | MS.gene96349:intron | 40.0% | |
| TGAAAGAAAGAGACACCAGA+GGG | - | chr8.4:6993818-6993837 | MS.gene96349:intron | 40.0% | |
| TTACAGGACTGTTAACGTGA+AGG | - | chr8.4:6993470-6993489 | MS.gene96349:intron | 40.0% | |
| TTGAAAGAAAGAGACACCAG+AGG | - | chr8.4:6993817-6993836 | MS.gene96349:intron | 40.0% | |
| ! | AAAGAACGGTATTGGATCCA+AGG | + | chr8.4:6991727-6991746 | None:intergenic | 40.0% |
| ! | ACATTGATGGTCAATGGGAT+AGG | - | chr8.4:6993279-6993298 | MS.gene96349:CDS | 40.0% |
| ! | AGCATTGAAGCTGAAGTTCA+TGG | - | chr8.4:6993011-6993030 | MS.gene96349:CDS | 40.0% |
| ! | TTAAGCTGGGTGTTACATTG+TGG | - | chr8.4:6991878-6991897 | MS.gene96349:CDS | 40.0% |
| ! | TTTGAGATACCGCGAAACTT+TGG | + | chr8.4:6992674-6992693 | None:intergenic | 40.0% |
| AAAAGAAGCAAAGCAAGGCG+TGG | - | chr8.4:6993774-6993793 | MS.gene96349:intron | 45.0% | |
| AAGTTAGTGAGATCTGCTCC+GGG | + | chr8.4:6992069-6992088 | None:intergenic | 45.0% | |
| AATCACAGTGGCACCGTAAT+TGG | + | chr8.4:6992130-6992149 | None:intergenic | 45.0% | |
| ACAGATGTGAACCTTTCCAG+TGG | + | chr8.4:6992449-6992468 | None:intergenic | 45.0% | |
| ACCTCTGCATCCTTGACAAT+GGG | + | chr8.4:6993561-6993580 | None:intergenic | 45.0% | |
| ACTGGAAAGGTTCACATCTG+TGG | - | chr8.4:6992448-6992467 | MS.gene96349:CDS | 45.0% | |
| AGAGACACACCATGTTTCCA+AGG | - | chr8.4:6992538-6992557 | MS.gene96349:CDS | 45.0% | |
| ATGGTGTGTCTCTCCAAGAA+TGG | + | chr8.4:6992531-6992550 | None:intergenic | 45.0% | |
| CAAGCTGTTCCAAAGTTTCG+CGG | - | chr8.4:6992662-6992681 | MS.gene96349:intron | 45.0% | |
| CGTCTGTCTAATACACGCAT+TGG | - | chr8.4:6992275-6992294 | MS.gene96349:intron | 45.0% | |
| GAAAGAAAGAGACACCAGAG+GGG | - | chr8.4:6993819-6993838 | MS.gene96349:intron | 45.0% | |
| GAGACACACCATGTTTCCAA+GGG | - | chr8.4:6992539-6992558 | MS.gene96349:CDS | 45.0% | |
| GGAGCAACTCCAAAAGATGT+AGG | + | chr8.4:6992500-6992519 | None:intergenic | 45.0% | |
| GGATGCAGAGGTAACTAACA+AGG | - | chr8.4:6993569-6993588 | MS.gene96349:CDS | 45.0% | |
| TACCTCTGCATCCTTGACAA+TGG | + | chr8.4:6993562-6993581 | None:intergenic | 45.0% | |
| TAGGACGTTAAGGTTACCCT+TGG | + | chr8.4:6992558-6992577 | None:intergenic | 45.0% | |
| TCCAAAAGATGTAGGACGTG+TGG | + | chr8.4:6992492-6992511 | None:intergenic | 45.0% | |
| TCCAGTTCCAGGAGTTAGTT+GGG | - | chr8.4:6993109-6993128 | MS.gene96349:CDS | 45.0% | |
| TGGTGTGTCTCTCCAAGAAT+GGG | + | chr8.4:6992530-6992549 | None:intergenic | 45.0% | |
| TTCCAGGAGTTAGTTGGGTT+GGG | - | chr8.4:6993114-6993133 | MS.gene96349:CDS | 45.0% | |
| TTCCAGTTCCAGGAGTTAGT+TGG | - | chr8.4:6993108-6993127 | MS.gene96349:CDS | 45.0% | |
| TTTCCTTGTCATCTGTTGCG+TGG | + | chr8.4:6992619-6992638 | None:intergenic | 45.0% | |
| ! | ACCACACGTCCTACATCTTT+TGG | - | chr8.4:6992488-6992507 | MS.gene96349:CDS | 45.0% |
| ! | CTGTTGTTGATCAGGGTGTT+TGG | - | chr8.4:6993683-6993702 | MS.gene96349:CDS | 45.0% |
| !! | ATTACGGTGCCACTGTGATT+TGG | - | chr8.4:6992130-6992149 | MS.gene96349:CDS | 45.0% |
| !! | GAAACTTTGGAACAGCTTGC+TGG | + | chr8.4:6992661-6992680 | None:intergenic | 45.0% |
| ACCCAACTAACTCCTGGAAC+TGG | + | chr8.4:6993113-6993132 | None:intergenic | 50.0% | |
| ATCCCAACCCAACTAACTCC+TGG | + | chr8.4:6993119-6993138 | None:intergenic | 50.0% | |
| ATGAGCAGAGTCCACTGGAA+AGG | - | chr8.4:6992435-6992454 | MS.gene96349:CDS | 50.0% | |
| CAACAATGAGCAGAGTCCAC+TGG | - | chr8.4:6992430-6992449 | MS.gene96349:CDS | 50.0% | |
| CGTAGGATAACTCAGCCACA+AGG | + | chr8.4:6993169-6993188 | None:intergenic | 50.0% | |
| CTGCACACGAATACAAGCCA+AGG | + | chr8.4:6992315-6992334 | None:intergenic | 50.0% | |
| CTTGTCATCTGTTGCGTGGA+GGG | + | chr8.4:6992615-6992634 | None:intergenic | 50.0% | |
| GATGAGAAACAGGGAGAGGA+CGG | + | chr8.4:6991691-6991710 | None:intergenic | 50.0% | |
| GCTCAAAGCTCCCATTGTCA+AGG | - | chr8.4:6993548-6993567 | MS.gene96349:CDS | 50.0% | |
| GGTGCTCGGTAACCATAACT+CGG | + | chr8.4:6992003-6992022 | None:intergenic | 50.0% | |
| GTTCCAGGAGTTAGTTGGGT+TGG | - | chr8.4:6993113-6993132 | MS.gene96349:CDS | 50.0% | |
| TCCCATTGTCAAGGATGCAG+AGG | - | chr8.4:6993557-6993576 | MS.gene96349:CDS | 50.0% | |
| ! | AGCTGGGTGTTACATTGTGG+CGG | - | chr8.4:6991881-6991900 | MS.gene96349:CDS | 50.0% |
| AGAAGCAAAGCAAGGCGTGG+AGG | - | chr8.4:6993777-6993796 | MS.gene96349:intron | 55.0% | |
| CCTCCACGCAACAGATGACA+AGG | - | chr8.4:6992613-6992632 | MS.gene96349:intron | 55.0% | |
| CCTGCTCGAGTAGGACGTTA+AGG | + | chr8.4:6992568-6992587 | None:intergenic | 55.0% | |
| CCTTAACGTCCTACTCGAGC+AGG | - | chr8.4:6992565-6992584 | MS.gene96349:CDS | 55.0% | |
| CCTTGTCATCTGTTGCGTGG+AGG | + | chr8.4:6992616-6992635 | None:intergenic | 55.0% | |
| GCAGGTTTCCACCAATCCTC+CGG | - | chr8.4:6992583-6992602 | MS.gene96349:CDS | 55.0% | |
| GGGGATATGATAGGTGCAGC+AGG | + | chr8.4:6993931-6993950 | None:intergenic | 55.0% | |
| TGGTGGAAACCTGCTCGAGT+AGG | + | chr8.4:6992577-6992596 | None:intergenic | 55.0% | |
| ! | GCTGGGTGTTACATTGTGGC+GGG | - | chr8.4:6991882-6991901 | MS.gene96349:CDS | 55.0% |
| ! | GGTTCACATCTGTGGTAGCG+TGG | - | chr8.4:6992456-6992475 | MS.gene96349:CDS | 55.0% |
| !! | GTGCAAAGAGACTGGCCTTG+TGG | - | chr8.4:6993151-6993170 | MS.gene96349:CDS | 55.0% |
| AGGAGTCCAACGTTCCCCTC+TGG | + | chr8.4:6993836-6993855 | None:intergenic | 60.0% | |
| GAGACACCAGAGGGGAACGT+TGG | - | chr8.4:6993827-6993846 | MS.gene96349:intron | 60.0% | |
| GAGGGCAGATACCGGAGGAT+TGG | + | chr8.4:6992597-6992616 | None:intergenic | 60.0% | |
| GGCAGATACCGGAGGATTGG+TGG | + | chr8.4:6992594-6992613 | None:intergenic | 60.0% | |
| GTTGCGTGGAGGGCAGATAC+CGG | + | chr8.4:6992605-6992624 | None:intergenic | 60.0% | |
| GCGTGGAGGGCAGATACCGG+AGG | + | chr8.4:6992602-6992621 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 6991679 | 6993954 | 6991679 | ID=MS.gene96349 |
| chr8.4 | mRNA | 6991679 | 6993954 | 6991679 | ID=MS.gene96349.t1;Parent=MS.gene96349 |
| chr8.4 | exon | 6993952 | 6993954 | 6993952 | ID=MS.gene96349.t1.exon1;Parent=MS.gene96349.t1 |
| chr8.4 | CDS | 6993952 | 6993954 | 6993952 | ID=cds.MS.gene96349.t1;Parent=MS.gene96349.t1 |
| chr8.4 | exon | 6993541 | 6993711 | 6993541 | ID=MS.gene96349.t1.exon2;Parent=MS.gene96349.t1 |
| chr8.4 | CDS | 6993541 | 6993711 | 6993541 | ID=cds.MS.gene96349.t1;Parent=MS.gene96349.t1 |
| chr8.4 | exon | 6992950 | 6993298 | 6992950 | ID=MS.gene96349.t1.exon3;Parent=MS.gene96349.t1 |
| chr8.4 | CDS | 6992950 | 6993298 | 6992950 | ID=cds.MS.gene96349.t1;Parent=MS.gene96349.t1 |
| chr8.4 | exon | 6992333 | 6992627 | 6992333 | ID=MS.gene96349.t1.exon4;Parent=MS.gene96349.t1 |
| chr8.4 | CDS | 6992333 | 6992627 | 6992333 | ID=cds.MS.gene96349.t1;Parent=MS.gene96349.t1 |
| chr8.4 | exon | 6992055 | 6992157 | 6992055 | ID=MS.gene96349.t1.exon5;Parent=MS.gene96349.t1 |
| chr8.4 | CDS | 6992055 | 6992157 | 6992055 | ID=cds.MS.gene96349.t1;Parent=MS.gene96349.t1 |
| chr8.4 | exon | 6991679 | 6991936 | 6991679 | ID=MS.gene96349.t1.exon6;Parent=MS.gene96349.t1 |
| chr8.4 | CDS | 6991679 | 6991936 | 6991679 | ID=cds.MS.gene96349.t1;Parent=MS.gene96349.t1 |
| Gene Sequence |
| Protein sequence |
