AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96362


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96362.t1 MTR_4g127100 98.480 592 9 0 1 592 1 592 0.0 1207
MS.gene96362.t1 MTR_4g127100 98.295 528 9 0 1 528 1 528 0.0 1077
MS.gene96362.t1 MTR_4g127090 73.579 598 88 7 1 592 1 534 0.0 852
MS.gene96362.t1 MTR_4g084870 56.049 653 201 15 1 593 1 627 0.0 668
MS.gene96362.t1 MTR_6g069510 58.211 615 190 12 1 592 1 571 0.0 662
MS.gene96362.t1 MTR_7g089360 59.667 600 192 12 1 592 1 558 0.0 641
MS.gene96362.t1 MTR_7g089360 59.500 600 193 12 1 592 1 558 0.0 638
MS.gene96362.t1 MTR_1g030890 56.913 622 204 12 1 592 1 588 0.0 635
MS.gene96362.t1 MTR_8g107360 55.705 596 157 14 1 593 1 492 0.0 594
MS.gene96362.t1 MTR_1g030890 53.777 556 193 12 1 526 1 522 1.42e-179 518
MS.gene96362.t1 MTR_1g029190 46.745 599 209 20 1 593 1 495 2.00e-146 434
MS.gene96362.t1 MTR_2g038470 42.308 598 217 13 1 592 1 476 3.09e-137 410
MS.gene96362.t1 MTR_6g011400 55.696 158 70 0 1 158 1 158 3.87e-50 177
MS.gene96362.t1 MTR_6g011400 57.252 131 54 1 465 593 199 329 2.99e-41 153
MS.gene96362.t1 MTR_7g009370 54.658 161 68 2 1 159 1 158 2.73e-48 172
MS.gene96362.t1 MTR_7g009370 51.462 171 73 2 423 593 165 325 2.09e-43 159
MS.gene96362.t1 MTR_7g079720 49.359 156 78 1 1 156 1 155 1.05e-47 171
MS.gene96362.t1 MTR_7g079720 43.373 166 82 2 435 593 169 329 4.03e-38 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96362.t1 AT5G57090 74.513 616 131 11 1 592 1 614 0.0 879
MS.gene96362.t1 AT5G57090 72.179 514 118 10 103 592 2 514 0.0 694
MS.gene96362.t1 AT1G70940 57.008 635 202 14 1 592 1 607 0.0 649
MS.gene96362.t1 AT1G23080 58.075 613 205 12 1 592 1 582 0.0 647
MS.gene96362.t1 AT1G23080 58.075 613 205 12 1 592 1 582 0.0 647
MS.gene96362.t1 AT2G01420 56.564 617 211 12 1 593 1 584 0.0 644
MS.gene96362.t1 AT2G01420 57.305 616 204 13 1 593 1 580 0.0 644
MS.gene96362.t1 AT1G23080 57.536 617 206 12 1 592 1 586 0.0 643
MS.gene96362.t1 AT1G73590 58.117 616 207 15 1 592 1 589 0.0 632
MS.gene96362.t1 AT1G23080 55.393 547 192 12 1 526 1 516 0.0 550
MS.gene96362.t1 AT2G01420 54.364 550 194 12 1 526 1 517 0.0 539
MS.gene96362.t1 AT1G77110 49.235 327 130 9 1 306 1 312 1.57e-90 290
MS.gene96362.t1 AT1G77110 67.883 137 44 0 457 593 402 538 2.11e-53 191
MS.gene96362.t1 AT1G77110 49.235 327 130 9 1 306 1 312 2.97e-90 290
MS.gene96362.t1 AT1G77110 67.883 137 44 0 457 593 402 538 4.31e-53 191
MS.gene96362.t1 AT5G16530 52.532 158 74 1 1 158 1 157 1.06e-50 178
MS.gene96362.t1 AT5G16530 52.033 123 59 0 471 593 195 317 4.05e-38 144
MS.gene96362.t1 AT5G16530 52.532 158 74 1 1 158 1 157 3.83e-50 177
MS.gene96362.t1 AT5G16530 52.033 123 59 0 471 593 195 317 1.19e-37 143
MS.gene96362.t1 AT5G15100 47.458 177 84 2 1 173 1 172 2.54e-43 159
MS.gene96362.t1 AT5G15100 54.545 132 60 0 462 593 204 335 2.06e-40 151

Find 135 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCAAATCCTATGCTTTC+TGG 0.083914 8.4:-7698064 MS.gene96362:CDS
AAAGCTGCTTCTACTGATTT+TGG 0.151528 8.4:-7697899 MS.gene96362:CDS
GTGGCGTCATATTATTTAAA+TGG 0.167054 8.4:+7698392 None:intergenic
TCTGACGTTGTTTCGCTTAA+TGG 0.202697 8.4:-7698523 MS.gene96362:CDS
GTTATAGAAGCTGCAGTTTC+AGG 0.222137 8.4:+7698562 None:intergenic
GAAATGCCATCTATTGTAAA+AGG 0.235112 8.4:-7697252 MS.gene96362:CDS
TTTGGTCTCTTGTATCATTT+AGG 0.244094 8.4:-7697382 MS.gene96362:intron
ATAAGACTTGAGTAGGTATT+AGG 0.244249 8.4:+7697413 None:intergenic
CACCCAGTACTGAGTATATT+TGG 0.250618 8.4:+7696777 None:intergenic
AATACCTACTCAAGTCTTAT+AGG 0.254018 8.4:-7697410 MS.gene96362:CDS
TTAAGATTCCCTTCGGAAAT+AGG 0.258413 8.4:+7697935 None:intergenic
CTTCCAAGTCCATCTTCTTC+TGG 0.279820 8.4:+7697531 None:intergenic
ATGTGCAACTCCTTGTTATT+AGG 0.280094 8.4:+7697983 None:intergenic
CTATTTGTGTATCCGTGTTT+TGG 0.282706 8.4:+7698247 None:intergenic
TTGTTCTGCAAAGTGTTATT+TGG 0.283570 8.4:-7698648 MS.gene96362:CDS
CTTCAAACTGATGCTGAAAT+AGG 0.286348 8.4:-7698490 MS.gene96362:CDS
TCTTCCTAACACACTTGTTA+TGG 0.291487 8.4:-7698731 MS.gene96362:CDS
GATCATTGGAAGATATAAAA+TGG 0.291739 8.4:+7698893 None:intergenic
ATCTTCTTCTGGCTAATATA+TGG 0.325305 8.4:+7697542 None:intergenic
CTTACATGTTGCAATTGTTC+AGG 0.334263 8.4:-7696960 MS.gene96362:intron
CTTCCTAACACACTTGTTAT+GGG 0.344721 8.4:-7698730 MS.gene96362:CDS
TGAATATGCAGGTCTGTTCA+TGG 0.369728 8.4:-7697107 MS.gene96362:intron
GAACCAGAAAGCATAGGATT+TGG 0.370922 8.4:+7698061 None:intergenic
AAGATCAACTACTAACTCTA+TGG 0.372841 8.4:-7698437 MS.gene96362:CDS
GACTCATCCTTATCATGGTT+TGG 0.377147 8.4:-7697454 MS.gene96362:CDS
GATAGCATGGGTGGTGGAAA+TGG 0.382932 8.4:-7698013 MS.gene96362:CDS
CAAGTCTTATAGGACTTGTT+TGG 0.388260 8.4:-7697400 MS.gene96362:CDS
AGGAGTTGCACATGTTTGTT+TGG 0.388483 8.4:-7697973 MS.gene96362:CDS
ACTACTAACTCTATGGTATC+TGG 0.400134 8.4:-7698430 MS.gene96362:CDS
TGGCGTCATATTATTTAAAT+GGG 0.400508 8.4:+7698393 None:intergenic
AGATGGACTTGGAAGGAGGA+GGG 0.406669 8.4:-7697523 MS.gene96362:CDS
TTCACACCAGATCAATGTTC+TGG 0.419637 8.4:-7698961 MS.gene96362:CDS
ATTCCCATAACAAGTGTGTT+AGG 0.421389 8.4:+7698727 None:intergenic
ATTCATAGCATAAGGATCAT+TGG 0.433457 8.4:+7698879 None:intergenic
TGCATAAGAAGAGGGGAGGG+AGG 0.434830 8.4:-7698129 MS.gene96362:CDS
CATCCAAATATACTCAGTAC+TGG 0.436602 8.4:-7696780 MS.gene96362:CDS
ATACTGTCTGATGCTGGTCT+TGG 0.436774 8.4:-7697219 MS.gene96362:CDS
AGACCTCGGAGTAGCCCCTT+TGG 0.441905 8.4:+7698180 None:intergenic
AGTCTTGTCATAACACTTGC+TGG 0.442208 8.4:+7697473 None:intergenic
CACAAAGGGAACAATACCTT+GGG 0.446341 8.4:+7696823 None:intergenic
GACAAGACTCATCCTTATCA+TGG 0.446845 8.4:-7697459 MS.gene96362:CDS
TGTGTTAGGAAGAGTTGAAA+GGG 0.446908 8.4:+7698741 None:intergenic
AAAACCAAGATAGTCTTGAT+TGG 0.448110 8.4:-7698780 MS.gene96362:CDS
AAACTAGATCCTCTTGGAGT+TGG 0.454124 8.4:+7698316 None:intergenic
CTATCTATAACCATGATTAC+CGG 0.459673 8.4:-7699072 None:intergenic
AAGATGGACTTGGAAGGAGG+AGG 0.460717 8.4:-7697524 MS.gene96362:CDS
ACGCATACCAATTGCTATTG+AGG 0.461284 8.4:+7696991 None:intergenic
GTGAATCAGCTGCTAAGAAA+TGG 0.462800 8.4:+7698854 None:intergenic
CTTTCTGGTTCTACAAGTGC+TGG 0.462832 8.4:-7698049 MS.gene96362:CDS
AAATGGTAATTCATAGCATA+AGG 0.463466 8.4:+7698871 None:intergenic
TTTCCACATGCAATCAGCTT+AGG 0.466851 8.4:+7697076 None:intergenic
AGTGGTGAGTTGTTCAATAA+TGG 0.467127 8.4:-7698100 MS.gene96362:CDS
CGGCGCTTTACTTTGAAACA+TGG 0.467403 8.4:+7698273 None:intergenic
TGCATGTTTAAGATTCCCTT+CGG 0.467611 8.4:+7697928 None:intergenic
ATTCTATGCAATCTTCCAAA+GGG 0.470349 8.4:-7698195 MS.gene96362:CDS
TAGTCCAATCAAGACTATCT+TGG 0.470572 8.4:+7698776 None:intergenic
ATCTCAATACTGTCTGATGC+TGG 0.484824 8.4:-7697225 MS.gene96362:CDS
GATGGACTTGGAAGGAGGAG+GGG 0.487071 8.4:-7697522 MS.gene96362:CDS
GCGGCAACCTCAATAGCAAT+TGG 0.493077 8.4:-7696998 MS.gene96362:CDS
ATTTCAACATCCCTTTGTCT+AGG 0.495176 8.4:+7697584 None:intergenic
AATATCATAGCAACATATAG+TGG 0.496035 8.4:+7699015 None:intergenic
GAGGTTGCCGCAATCACAGC+TGG 0.497964 8.4:+7697010 None:intergenic
ACAAAGGGATGTTGAAATTG+AGG 0.498259 8.4:-7697579 MS.gene96362:CDS
TTTATACCAGAACATTGATC+TGG 0.498746 8.4:+7698955 None:intergenic
GTGTGTTAGGAAGAGTTGAA+AGG 0.500046 8.4:+7698740 None:intergenic
TGCCGCAATCACAGCTGGAC+CGG 0.500587 8.4:+7697015 None:intergenic
CCAGAAAGCATAGGATTTGG+AGG 0.501646 8.4:+7698064 None:intergenic
TGGTTAAAACTAGATCCTCT+TGG 0.501747 8.4:+7698310 None:intergenic
CATACGGTTCAGTTCGTTGG+TGG 0.502544 8.4:-7698990 MS.gene96362:CDS
GTATTCTTTGCAAACACAAA+GGG 0.505139 8.4:+7696809 None:intergenic
GAAAATACCGTTGCATCAAA+AGG 0.506036 8.4:-7697845 MS.gene96362:intron
ATATATTAGCCAGAAGAAGA+TGG 0.507802 8.4:-7697540 MS.gene96362:CDS
TATATCCTTACCGGTAATCA+TGG 0.512246 8.4:+7699062 None:intergenic
CCACGAGCTTCAAATCTAAC+CGG 0.512403 8.4:-7698373 MS.gene96362:CDS
TAGCATACGGTTCAGTTCGT+TGG 0.514377 8.4:-7698993 MS.gene96362:CDS
GGATGCATAAGAAGAGGGGA+GGG 0.515503 8.4:-7698132 MS.gene96362:CDS
CACAAAGAAGAAAGATAGCA+TGG 0.528645 8.4:-7698026 MS.gene96362:CDS
GTCTGATGCTGGTCTTGGAA+TGG 0.532632 8.4:-7697214 MS.gene96362:CDS
TATTCTATGCAATCTTCCAA+AGG 0.533077 8.4:-7698196 MS.gene96362:CDS
TAGCCAGAAGAAGATGGACT+TGG 0.535792 8.4:-7697534 MS.gene96362:CDS
ATGGGTGGTGGAAATGGTAA+TGG 0.538764 8.4:-7698007 MS.gene96362:CDS
AGGATGCATAAGAAGAGGGG+AGG 0.538999 8.4:-7698133 MS.gene96362:CDS
AACATCGTATATATCCTTAC+CGG 0.540847 8.4:+7699053 None:intergenic
GCTATGTATGGTGATTTCTC+AGG 0.545619 8.4:-7698691 MS.gene96362:CDS
AGGGGAGGGAGGAGTATGAG+TGG 0.545646 8.4:-7698118 MS.gene96362:CDS
TCATGTGGAACATATTTGGA+AGG 0.549434 8.4:+7697866 None:intergenic
TATAACCATGATTACCGGTA+AGG 0.552385 8.4:-7699067 None:intergenic
AAGAAAGATAGCATGGGTGG+TGG 0.552901 8.4:-7698019 MS.gene96362:CDS
GAACATGAGTCCTAGACAAA+GGG 0.557185 8.4:-7697594 MS.gene96362:CDS
TCTTCGAAATTTGAAGACCT+CGG 0.557299 8.4:+7698166 None:intergenic
ACACAAAGGGAACAATACCT+TGG 0.558237 8.4:+7696822 None:intergenic
ATTTCAGCATCAGTTTGAAG+TGG 0.563565 8.4:+7698493 None:intergenic
ATTGAGGATGCATAAGAAGA+GGG 0.564904 8.4:-7698137 MS.gene96362:CDS
AGTGCTTCACCTATTTCCGA+AGG 0.569824 8.4:-7697944 MS.gene96362:CDS
GACCGGTCCAGCTGTGATTG+CGG 0.570068 8.4:-7697017 MS.gene96362:CDS
ATAAAATGGAAAGATAGTAA+TGG 0.571283 8.4:+7698907 None:intergenic
GGAATGGCCATGTTCAGTCT+AGG 0.576547 8.4:-7697198 MS.gene96362:intron
GATGCTGAAATAGGTGAAGA+TGG 0.576751 8.4:-7698481 MS.gene96362:CDS
AAGTCCTATAAGACTTGAGT+AGG 0.579378 8.4:+7697406 None:intergenic
ATGGCTGTAAGGTTCTTGAC+CGG 0.579568 8.4:-7697034 MS.gene96362:CDS
GAAAGCATAGGATTTGGAGG+AGG 0.582023 8.4:+7698067 None:intergenic
ATTTCGAAGATGAGACATTG+AGG 0.583231 8.4:-7698153 MS.gene96362:CDS
TGTATTCTTTGCAAACACAA+AGG 0.583549 8.4:+7696808 None:intergenic
AGCATCAGACAGTATTGAGA+TGG 0.585685 8.4:+7697227 None:intergenic
CATACATAGCTCTTAAAAGA+GGG 0.587601 8.4:+7698704 None:intergenic
CCATACATAGCTCTTAAAAG+AGG 0.589751 8.4:+7698703 None:intergenic
GTTGCTATGATATTAGCATA+CGG 0.591499 8.4:-7699006 MS.gene96362:CDS
TCAATAGCAATTGGTATGCG+TGG 0.591915 8.4:-7696989 MS.gene96362:CDS
CATTGAGGATGCATAAGAAG+AGG 0.595513 8.4:-7698138 MS.gene96362:CDS
ATCCAAATATACTCAGTACT+GGG 0.597499 8.4:-7696779 None:intergenic
CAGTACTGAGTATATTTGGA+TGG 0.598102 8.4:+7696781 None:intergenic
CAGCCTAAGCTGATTGCATG+TGG 0.600231 8.4:-7697079 MS.gene96362:CDS
CCGGTTAGATTTGAAGCTCG+TGG 0.602636 8.4:+7698373 None:intergenic
AAAGCATAGGATTTGGAGGA+GGG 0.604256 8.4:+7698068 None:intergenic
AGAACATGAGTCCTAGACAA+AGG 0.609263 8.4:-7697595 MS.gene96362:CDS
CAGAAGAAGATGGACTTGGA+AGG 0.618184 8.4:-7697530 MS.gene96362:CDS
AAGAAGATGGACTTGGAAGG+AGG 0.619267 8.4:-7697527 MS.gene96362:CDS
TTGCAGGCTGCACTTCCCCA+AGG 0.623512 8.4:-7696839 MS.gene96362:intron
TGATTTCTCAGGAAATCTCA+TGG 0.626161 8.4:-7698680 MS.gene96362:CDS
CTTGTAGAACCAGAAAGCAT+AGG 0.628500 8.4:+7698055 None:intergenic
ACAAGTACCTAGACTGAACA+TGG 0.632685 8.4:+7697191 None:intergenic
GGTGAGTTGTTCAATAATGG+TGG 0.635458 8.4:-7698097 MS.gene96362:CDS
TCAAGAGAACCAACTCCAAG+AGG 0.636626 8.4:-7698325 MS.gene96362:CDS
TTCTATGCAATCTTCCAAAG+GGG 0.639413 8.4:-7698194 MS.gene96362:CDS
AGATGGTAAACTTCATGTTG+TGG 0.647519 8.4:-7698464 MS.gene96362:CDS
GTGCTTCACCTATTTCCGAA+GGG 0.647728 8.4:-7697943 MS.gene96362:CDS
AAGAAGAAAGATAGCATGGG+TGG 0.662615 8.4:-7698022 MS.gene96362:CDS
TGGTAATGGACCTAATAACA+AGG 0.666402 8.4:-7697993 MS.gene96362:CDS
ACAAAGAAGAAAGATAGCAT+GGG 0.672441 8.4:-7698025 MS.gene96362:CDS
TTGAGGATGCATAAGAAGAG+GGG 0.674550 8.4:-7698136 MS.gene96362:CDS
CTTCCAAAGGGGCTACTCCG+AGG 0.679359 8.4:-7698183 MS.gene96362:CDS
AACAGAATATATCTCAACAC+CGG 0.682527 8.4:+7698354 None:intergenic
CTTGTCATAACACTTGCTGG+AGG 0.701230 8.4:+7697476 None:intergenic
AAAGCGCCGAGTCCAAAACA+CGG 0.735141 8.4:-7698259 MS.gene96362:CDS
ACAAAGGGAACAATACCTTG+GGG 0.771870 8.4:+7696824 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGTTTAATTTTAATTTGC+AGG - chr8.4:7698985-7699004 MS.gene96362:CDS 15.0%
!!! TAATAGATTGAAGATTTTTT+TGG + chr8.4:7698504-7698523 None:intergenic 15.0%
!!! TGAAAGTTGATATATTTATA+GGG + chr8.4:7698113-7698132 None:intergenic 15.0%
!!! TTGAAAGTTGATATATTTAT+AGG + chr8.4:7698114-7698133 None:intergenic 15.0%
!! AATAAGCAACTAATTAGAAT+AGG + chr8.4:7698957-7698976 None:intergenic 20.0%
!! AATTAAGCCAAAAATTTCTT+AGG + chr8.4:7698695-7698714 None:intergenic 20.0%
!! ATAAAATGGAAAGATAGTAA+TGG + chr8.4:7696936-7696955 None:intergenic 20.0%
!! ATAAGCAACTAATTAGAATA+GGG + chr8.4:7698956-7698975 None:intergenic 20.0%
!!! ACAAATAGTTTTCAAAGTAA+TGG - chr8.4:7697608-7697627 MS.gene96362:CDS 20.0%
!!! ATAATCATTTTTGAATATGC+AGG - chr8.4:7698722-7698741 MS.gene96362:CDS 20.0%
!!! ATATTCTCCTAAGAAATTTT+TGG - chr8.4:7698685-7698704 MS.gene96362:CDS 20.0%
! AAATGGTAATTCATAGCATA+AGG + chr8.4:7696972-7696991 None:intergenic 25.0%
! AATATCATAGCAACATATAG+TGG + chr8.4:7696828-7696847 None:intergenic 25.0%
! GATCATTGGAAGATATAAAA+TGG + chr8.4:7696950-7696969 None:intergenic 25.0%
! TAAGCAACTAATTAGAATAG+GGG + chr8.4:7698955-7698974 None:intergenic 25.0%
! TGGCGTCATATTATTTAAAT+GGG + chr8.4:7697450-7697469 None:intergenic 25.0%
! TTCTTAGGAGAATATAATGT+TGG + chr8.4:7698680-7698699 None:intergenic 25.0%
!! AGTTTTCAAAGTAATGGTAA+TGG - chr8.4:7697614-7697633 MS.gene96362:CDS 25.0%
!! ATTTTCATGTGGAACATATT+TGG + chr8.4:7697981-7698000 None:intergenic 25.0%
!! TTTAATACCTTTTGATGCAA+CGG + chr8.4:7698005-7698024 None:intergenic 25.0%
!!! TTGAAGATTTTTTTGGAGAT+TGG + chr8.4:7698497-7698516 None:intergenic 25.0%
AACAGAATATATCTCAACAC+CGG + chr8.4:7697489-7697508 None:intergenic 30.0%
AACATCGTATATATCCTTAC+CGG + chr8.4:7696790-7696809 None:intergenic 30.0%
AAGATCAACTACTAACTCTA+TGG - chr8.4:7697403-7697422 MS.gene96362:CDS 30.0%
ACAAAGAAGAAAGATAGCAT+GGG - chr8.4:7697815-7697834 MS.gene96362:intron 30.0%
ACATGGCATAAAAATCAGTT+TGG + chr8.4:7697553-7697572 None:intergenic 30.0%
ATAAGACTTGAGTAGGTATT+AGG + chr8.4:7698430-7698449 None:intergenic 30.0%
ATATATTAGCCAGAAGAAGA+TGG - chr8.4:7698300-7698319 MS.gene96362:CDS 30.0%
ATTCATAGCATAAGGATCAT+TGG + chr8.4:7696964-7696983 None:intergenic 30.0%
ATTCTATGCAATCTTCCAAA+GGG - chr8.4:7697645-7697664 MS.gene96362:intron 30.0%
CATACATAGCTCTTAAAAGA+GGG + chr8.4:7697139-7697158 None:intergenic 30.0%
CTTCAAAAAGTAGTTATCCT+TGG - chr8.4:7697008-7697027 MS.gene96362:CDS 30.0%
GAAATGCCATCTATTGTAAA+AGG - chr8.4:7698588-7698607 MS.gene96362:CDS 30.0%
GTATTCTTTGCAAACACAAA+GGG + chr8.4:7699034-7699053 None:intergenic 30.0%
GTGGCGTCATATTATTTAAA+TGG + chr8.4:7697451-7697470 None:intergenic 30.0%
GTTGCTATGATATTAGCATA+CGG - chr8.4:7696834-7696853 MS.gene96362:CDS 30.0%
TATTCTATGCAATCTTCCAA+AGG - chr8.4:7697644-7697663 MS.gene96362:intron 30.0%
TGTATTCTTTGCAAACACAA+AGG + chr8.4:7699035-7699054 None:intergenic 30.0%
TTTATACCAGAACATTGATC+TGG + chr8.4:7696888-7696907 None:intergenic 30.0%
TTTGGTCTCTTGTATCATTT+AGG - chr8.4:7698458-7698477 MS.gene96362:CDS 30.0%
! AAAACCAAGATAGTCTTGAT+TGG - chr8.4:7697060-7697079 MS.gene96362:CDS 30.0%
! AATACCTACTCAAGTCTTAT+AGG - chr8.4:7698430-7698449 MS.gene96362:CDS 30.0%
! ATCTTCTTCTGGCTAATATA+TGG + chr8.4:7698301-7698320 None:intergenic 30.0%
! ATGGAACCTTTTACAATAGA+TGG + chr8.4:7698597-7698616 None:intergenic 30.0%
! TTGTTCTGCAAAGTGTTATT+TGG - chr8.4:7697192-7697211 MS.gene96362:intron 30.0%
AAGTCCTATAAGACTTGAGT+AGG + chr8.4:7698437-7698456 None:intergenic 35.0%
ACAAAGGGATGTTGAAATTG+AGG - chr8.4:7698261-7698280 MS.gene96362:CDS 35.0%
ACGCTAGATTATATAGAACG+AGG + chr8.4:7698074-7698093 None:intergenic 35.0%
ACTACTAACTCTATGGTATC+TGG - chr8.4:7697410-7697429 MS.gene96362:CDS 35.0%
AGATCATGTACAAGATTGCA+CGG + chr8.4:7698170-7698189 None:intergenic 35.0%
AGATGGTAAACTTCATGTTG+TGG - chr8.4:7697376-7697395 MS.gene96362:intron 35.0%
AGTGGTGAGTTGTTCAATAA+TGG - chr8.4:7697740-7697759 MS.gene96362:intron 35.0%
ATGCACATCATTAGCAGTTA+AGG + chr8.4:7698550-7698569 None:intergenic 35.0%
ATTCCCATAACAAGTGTGTT+AGG + chr8.4:7697116-7697135 None:intergenic 35.0%
ATTGAGGATGCATAAGAAGA+GGG - chr8.4:7697703-7697722 MS.gene96362:intron 35.0%
ATTTCAACATCCCTTTGTCT+AGG + chr8.4:7698259-7698278 None:intergenic 35.0%
ATTTCAGCATCAGTTTGAAG+TGG + chr8.4:7697350-7697369 None:intergenic 35.0%
ATTTCGAAGATGAGACATTG+AGG - chr8.4:7697687-7697706 MS.gene96362:intron 35.0%
CACAAAGAAGAAAGATAGCA+TGG - chr8.4:7697814-7697833 MS.gene96362:intron 35.0%
CAGTTAAGGATTCATGATCA+AGG + chr8.4:7698536-7698555 None:intergenic 35.0%
CATCCAAATATACTCAGTAC+TGG - chr8.4:7699060-7699079 MS.gene96362:CDS 35.0%
CCATACATAGCTCTTAAAAG+AGG + chr8.4:7697140-7697159 None:intergenic 35.0%
CTTACATGTTGCAATTGTTC+AGG - chr8.4:7698880-7698899 MS.gene96362:CDS 35.0%
CTTCAAACTGATGCTGAAAT+AGG - chr8.4:7697350-7697369 MS.gene96362:intron 35.0%
GAAAATACCGTTGCATCAAA+AGG - chr8.4:7697995-7698014 MS.gene96362:CDS 35.0%
TAGTCCAATCAAGACTATCT+TGG + chr8.4:7697067-7697086 None:intergenic 35.0%
TCATGTGGAACATATTTGGA+AGG + chr8.4:7697977-7697996 None:intergenic 35.0%
TCTTCGAAATTTGAAGACCT+CGG + chr8.4:7697677-7697696 None:intergenic 35.0%
TGATTTCTCAGGAAATCTCA+TGG - chr8.4:7697160-7697179 MS.gene96362:intron 35.0%
TGGTTAAAACTAGATCCTCT+TGG + chr8.4:7697533-7697552 None:intergenic 35.0%
TGTGTTAGGAAGAGTTGAAA+GGG + chr8.4:7697102-7697121 None:intergenic 35.0%
TTAAGATTCCCTTCGGAAAT+AGG + chr8.4:7697908-7697927 None:intergenic 35.0%
TTCTATGCAATCTTCCAAAG+GGG - chr8.4:7697646-7697665 MS.gene96362:intron 35.0%
! ACGAGTTGCAACATTTTCTA+TGG - chr8.4:7698787-7698806 MS.gene96362:CDS 35.0%
! CAACATTTTCTATGGCTGTA+AGG - chr8.4:7698795-7698814 MS.gene96362:CDS 35.0%
! CAAGTCTTATAGGACTTGTT+TGG - chr8.4:7698440-7698459 MS.gene96362:CDS 35.0%
! CAGTACTGAGTATATTTGGA+TGG + chr8.4:7699062-7699081 None:intergenic 35.0%
! CTATTTGTGTATCCGTGTTT+TGG + chr8.4:7697596-7697615 None:intergenic 35.0%
! GTTTTCTCCAAACCATGATA+AGG + chr8.4:7698396-7698415 None:intergenic 35.0%
! TCTTCCTAACACACTTGTTA+TGG - chr8.4:7697109-7697128 MS.gene96362:intron 35.0%
! TGCATGTTTAAGATTCCCTT+CGG + chr8.4:7697915-7697934 None:intergenic 35.0%
!! ATGTGCAACTCCTTGTTATT+AGG + chr8.4:7697860-7697879 None:intergenic 35.0%
!! CCTCTTTTAAGAGCTATGTA+TGG - chr8.4:7697137-7697156 MS.gene96362:intron 35.0%
!! CTTCCTAACACACTTGTTAT+GGG - chr8.4:7697110-7697129 MS.gene96362:intron 35.0%
!! TCCATATAAAAAGAGCACCA+AGG + chr8.4:7697028-7697047 None:intergenic 35.0%
!! TGGTAATGGACCTAATAACA+AGG - chr8.4:7697847-7697866 MS.gene96362:CDS 35.0%
!!! AAAGCTGCTTCTACTGATTT+TGG - chr8.4:7697941-7697960 MS.gene96362:CDS 35.0%
!!! TCCTTGGTGCTCTTTTTATA+TGG - chr8.4:7697024-7697043 MS.gene96362:CDS 35.0%
AAACTAGATCCTCTTGGAGT+TGG + chr8.4:7697527-7697546 None:intergenic 40.0%
AAAGCATAGGATTTGGAGGA+GGG + chr8.4:7697775-7697794 None:intergenic 40.0%
AAGAAGAAAGATAGCATGGG+TGG - chr8.4:7697818-7697837 MS.gene96362:intron 40.0%
ACAAAGGGAACAATACCTTG+GGG + chr8.4:7699019-7699038 None:intergenic 40.0%
ACAAGTACCTAGACTGAACA+TGG + chr8.4:7698652-7698671 None:intergenic 40.0%
ACACAAAGGGAACAATACCT+TGG + chr8.4:7699021-7699040 None:intergenic 40.0%
AGAACATGAGTCCTAGACAA+AGG - chr8.4:7698245-7698264 MS.gene96362:CDS 40.0%
AGGAGTTGCACATGTTTGTT+TGG - chr8.4:7697867-7697886 MS.gene96362:CDS 40.0%
ATCTCAATACTGTCTGATGC+TGG - chr8.4:7698615-7698634 MS.gene96362:CDS 40.0%
CACAAAGGGAACAATACCTT+GGG + chr8.4:7699020-7699039 None:intergenic 40.0%
CATTGAGGATGCATAAGAAG+AGG - chr8.4:7697702-7697721 MS.gene96362:intron 40.0%
CTGCAAAAACAGCGACAAAA+CGG + chr8.4:7696911-7696930 None:intergenic 40.0%
GAACATGAGTCCTAGACAAA+GGG - chr8.4:7698246-7698265 MS.gene96362:CDS 40.0%
GACAAGACTCATCCTTATCA+TGG - chr8.4:7698381-7698400 MS.gene96362:CDS 40.0%
GACTCATCCTTATCATGGTT+TGG - chr8.4:7698386-7698405 MS.gene96362:CDS 40.0%
GATGCTGAAATAGGTGAAGA+TGG - chr8.4:7697359-7697378 MS.gene96362:intron 40.0%
GCTATGTATGGTGATTTCTC+AGG - chr8.4:7697149-7697168 MS.gene96362:intron 40.0%
GGTGAGTTGTTCAATAATGG+TGG - chr8.4:7697743-7697762 MS.gene96362:intron 40.0%
GTGAATCAGCTGCTAAGAAA+TGG + chr8.4:7696989-7697008 None:intergenic 40.0%
GTGTGTTAGGAAGAGTTGAA+AGG + chr8.4:7697103-7697122 None:intergenic 40.0%
GTTATAGAAGCTGCAGTTTC+AGG + chr8.4:7697281-7697300 None:intergenic 40.0%
TCAATAGCAATTGGTATGCG+TGG - chr8.4:7698851-7698870 MS.gene96362:CDS 40.0%
TGAATATGCAGGTCTGTTCA+TGG - chr8.4:7698733-7698752 MS.gene96362:CDS 40.0%
TTCACACCAGATCAATGTTC+TGG - chr8.4:7696879-7696898 MS.gene96362:intron 40.0%
TTGAGGATGCATAAGAAGAG+GGG - chr8.4:7697704-7697723 MS.gene96362:intron 40.0%
TTTCCACATGCAATCAGCTT+AGG + chr8.4:7698767-7698786 None:intergenic 40.0%
! ACGCATACCAATTGCTATTG+AGG + chr8.4:7698852-7698871 None:intergenic 40.0%
! AGCATCAGACAGTATTGAGA+TGG + chr8.4:7698616-7698635 None:intergenic 40.0%
! AGTCTTGTCATAACACTTGC+TGG + chr8.4:7698370-7698389 None:intergenic 40.0%
! CTTGTAGAACCAGAAAGCAT+AGG + chr8.4:7697788-7697807 None:intergenic 40.0%
! GAACCAGAAAGCATAGGATT+TGG + chr8.4:7697782-7697801 None:intergenic 40.0%
! GATGCAACGGTATTTTCATG+TGG + chr8.4:7697992-7698011 None:intergenic 40.0%
! TCTGACGTTGTTTCGCTTAA+TGG - chr8.4:7697317-7697336 MS.gene96362:intron 40.0%
AAGAAAGATAGCATGGGTGG+TGG - chr8.4:7697821-7697840 MS.gene96362:intron 45.0%
AAGATTGCACGGACGTTTGA+CGG + chr8.4:7698159-7698178 None:intergenic 45.0%
AGTGCTTCACCTATTTCCGA+AGG - chr8.4:7697896-7697915 MS.gene96362:CDS 45.0%
ATGGCTGTAAGGTTCTTGAC+CGG - chr8.4:7698806-7698825 MS.gene96362:CDS 45.0%
CCACGAGCTTCAAATCTAAC+CGG - chr8.4:7697467-7697486 MS.gene96362:CDS 45.0%
CCTCCAAATCCTATGCTTTC+TGG - chr8.4:7697776-7697795 MS.gene96362:intron 45.0%
CTAATGATGTGCATGCATGC+AGG - chr8.4:7698556-7698575 MS.gene96362:CDS 45.0%
CTTCCAAGTCCATCTTCTTC+TGG + chr8.4:7698312-7698331 None:intergenic 45.0%
GTGCTTCACCTATTTCCGAA+GGG - chr8.4:7697897-7697916 MS.gene96362:CDS 45.0%
TAGCATACGGTTCAGTTCGT+TGG - chr8.4:7696847-7696866 MS.gene96362:intron 45.0%
TCAAGAGAACCAACTCCAAG+AGG - chr8.4:7697515-7697534 MS.gene96362:CDS 45.0%
! AAGAAGATGGACTTGGAAGG+AGG - chr8.4:7698313-7698332 MS.gene96362:CDS 45.0%
! ATACTGTCTGATGCTGGTCT+TGG - chr8.4:7698621-7698640 MS.gene96362:CDS 45.0%
! CAGAAGAAGATGGACTTGGA+AGG - chr8.4:7698310-7698329 MS.gene96362:CDS 45.0%
! CCAGAAAGCATAGGATTTGG+AGG + chr8.4:7697779-7697798 None:intergenic 45.0%
! CTTGTCATAACACTTGCTGG+AGG + chr8.4:7698367-7698386 None:intergenic 45.0%
! GAAAGCATAGGATTTGGAGG+AGG + chr8.4:7697776-7697795 None:intergenic 45.0%
! TAGCCAGAAGAAGATGGACT+TGG - chr8.4:7698306-7698325 MS.gene96362:CDS 45.0%
!! ATGGGTGGTGGAAATGGTAA+TGG - chr8.4:7697833-7697852 MS.gene96362:intron 45.0%
!! CGGCGCTTTACTTTGAAACA+TGG + chr8.4:7697570-7697589 None:intergenic 45.0%
!! CTTTCTGGTTCTACAAGTGC+TGG - chr8.4:7697791-7697810 MS.gene96362:intron 45.0%
!! GTGTATCCGTGTTTTGGACT+CGG + chr8.4:7697590-7697609 None:intergenic 45.0%
AGGATGCATAAGAAGAGGGG+AGG - chr8.4:7697707-7697726 MS.gene96362:intron 50.0%
CAGCCTAAGCTGATTGCATG+TGG - chr8.4:7698761-7698780 MS.gene96362:CDS 50.0%
CATACGGTTCAGTTCGTTGG+TGG - chr8.4:7696850-7696869 MS.gene96362:intron 50.0%
GCGGCAACCTCAATAGCAAT+TGG - chr8.4:7698842-7698861 MS.gene96362:CDS 50.0%
GGAATGGCCATGTTCAGTCT+AGG - chr8.4:7698642-7698661 MS.gene96362:CDS 50.0%
GGATGCATAAGAAGAGGGGA+GGG - chr8.4:7697708-7697727 MS.gene96362:intron 50.0%
! AAGATGGACTTGGAAGGAGG+AGG - chr8.4:7698316-7698335 MS.gene96362:CDS 50.0%
! AGATGGACTTGGAAGGAGGA+GGG - chr8.4:7698317-7698336 MS.gene96362:CDS 50.0%
! CCGGTTAGATTTGAAGCTCG+TGG + chr8.4:7697470-7697489 None:intergenic 50.0%
!! AAAGCGCCGAGTCCAAAACA+CGG - chr8.4:7697581-7697600 MS.gene96362:CDS 50.0%
!! GATAGCATGGGTGGTGGAAA+TGG - chr8.4:7697827-7697846 MS.gene96362:intron 50.0%
!! GTCTGATGCTGGTCTTGGAA+TGG - chr8.4:7698626-7698645 MS.gene96362:CDS 50.0%
TGCATAAGAAGAGGGGAGGG+AGG - chr8.4:7697711-7697730 MS.gene96362:intron 55.0%
! GATGGACTTGGAAGGAGGAG+GGG - chr8.4:7698318-7698337 MS.gene96362:CDS 55.0%
AGACCTCGGAGTAGCCCCTT+TGG + chr8.4:7697663-7697682 None:intergenic 60.0%
CTTCCAAAGGGGCTACTCCG+AGG - chr8.4:7697657-7697676 MS.gene96362:intron 60.0%
GACCGGTCCAGCTGTGATTG+CGG - chr8.4:7698823-7698842 MS.gene96362:CDS 60.0%
GAGGTTGCCGCAATCACAGC+TGG + chr8.4:7698833-7698852 None:intergenic 60.0%
TGCCGCAATCACAGCTGGAC+CGG + chr8.4:7698828-7698847 None:intergenic 60.0%
TTGCAGGCTGCACTTCCCCA+AGG - chr8.4:7699001-7699020 MS.gene96362:CDS 60.0%
! AGGGGAGGGAGGAGTATGAG+TGG - chr8.4:7697722-7697741 MS.gene96362:intron 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 7696780 7699082 7696780 ID=MS.gene96362
chr8.4 mRNA 7696780 7699082 7696780 ID=MS.gene96362.t1;Parent=MS.gene96362
chr8.4 exon 7697846 7699082 7697846 ID=MS.gene96362.t1.exon1;Parent=MS.gene96362.t1
chr8.4 CDS 7697846 7699082 7697846 ID=cds.MS.gene96362.t1;Parent=MS.gene96362.t1
chr8.4 exon 7697383 7697635 7697383 ID=MS.gene96362.t1.exon2;Parent=MS.gene96362.t1
chr8.4 CDS 7697383 7697635 7697383 ID=cds.MS.gene96362.t1;Parent=MS.gene96362.t1
chr8.4 exon 7697199 7697284 7697199 ID=MS.gene96362.t1.exon3;Parent=MS.gene96362.t1
chr8.4 CDS 7697199 7697284 7697199 ID=cds.MS.gene96362.t1;Parent=MS.gene96362.t1
chr8.4 exon 7696961 7697118 7696961 ID=MS.gene96362.t1.exon4;Parent=MS.gene96362.t1
chr8.4 CDS 7696961 7697118 7696961 ID=cds.MS.gene96362.t1;Parent=MS.gene96362.t1
chr8.4 exon 7696780 7696855 7696780 ID=MS.gene96362.t1.exon5;Parent=MS.gene96362.t1
chr8.4 CDS 7696780 7696855 7696780 ID=cds.MS.gene96362.t1;Parent=MS.gene96362.t1
Gene Sequence

>MS.gene96362

ATGATTACCGGTAAGGATATATACGATGTTTTCGCAGCAATTGTGCCACTATATGTTGCTATGATATTAGCATACGGTTCAGTTCGTTGGTGGAAAATCTTCACACCAGATCAATGTTCTGGTATAAACCGTTTTGTCGCTGTTTTTGCAGTTCCATTACTATCTTTCCATTTTATATCTTCCAATGATCCTTATGCTATGAATTACCATTTCTTAGCAGCTGATTCACTTCAAAAAGTAGTTATCCTTGGTGCTCTTTTTATATGGAATACATTCTCAAAAAACCAAGATAGTCTTGATTGGACTATTACACTTTTCTCCCTTTCAACTCTTCCTAACACACTTGTTATGGGAATCCCTCTTTTAAGAGCTATGTATGGTGATTTCTCAGGAAATCTCATGGTACAAATTGTTGTTCTGCAAAGTGTTATTTGGTACACTCTTATGTTGTTTTTGTTTGAATATAGAGCTGCTAAACTTCTCATAACAGAACAGTTTCCTGAAACTGCAGCTTCTATAACATCATTCAAAGTTGATTCTGACGTTGTTTCGCTTAATGGTAGAGAACCACTTCAAACTGATGCTGAAATAGGTGAAGATGGTAAACTTCATGTTGTGGTTAAAAGATCAACTACTAACTCTATGGTATCTGGTTCATTTAACAAATCCCATTTAAATAATATGACGCCACGAGCTTCAAATCTAACCGGTGTTGAGATATATTCTGTTCAATCATCAAGAGAACCAACTCCAAGAGGATCTAGTTTTAACCAAACTGATTTTTATGCCATGTTTCAAAGTAAAGCGCCGAGTCCAAAACACGGATACACAAATAGTTTTCAAAGTAATGGTAATGGTGATATTTATTCTATGCAATCTTCCAAAGGGGCTACTCCGAGGTCTTCAAATTTCGAAGATGAGACATTGAGGATGCATAAGAAGAGGGGAGGGAGGAGTATGAGTGGTGAGTTGTTCAATAATGGTGGTTCTTACCCTCCTCCAAATCCTATGCTTTCTGGTTCTACAAGTGCTGGCACAAAGAAGAAAGATAGCATGGGTGGTGGAAATGGTAATGGACCTAATAACAAGGAGTTGCACATGTTTGTTTGGAGTTCAAGTGCTTCACCTATTTCCGAAGGGAATCTTAAACATGCAGTAAATAAAGCTGCTTCTACTGATTTTGGCACTGTTGATCCTTCCAAATATGTTCCACATGAAAATACCGTTGCATCAAAAGGTATTAAAAATGATGTCACACATCAAATTCATTTATGTTTTTCATTTATTAAAACCTCGTTCTATATAATCTAGCGTTAAATATATTTTTTGTCCCTATAAATATATCAACTTTCAAATTTTAGTTTCTACAAAAATTTCCGTCAAACGTCCGTGCAATCTTGTACATGATCTTTACTAGTTATGTTTTGTTGATTAATTTAAAATGCAGCTGTTACTGAATTGATTGAGAACATGAGTCCTAGACAAAGGGATGTTGAAATTGAGGAAGCAGTAAAGTCTCCATATATTAGCCAGAAGAAGATGGACTTGGAAGGAGGAGGGGATGTAAACAAAAATACACAGATGCCTCCAGCAAGTGTTATGACAAGACTCATCCTTATCATGGTTTGGAGAAAACTCATCAGAAATCCTAATACCTACTCAAGTCTTATAGGACTTGTTTGGTCTCTTGTATCATTTAGGTATTTCAGTCATACCAATCTCCAAAAAAATCTTCAATCTATTAATTTAGTATCCTTGATCATGAATCCTTAACTGCTAATGATGTGCATGCATGCAGGTTTCACATTGAAATGCCATCTATTGTAAAAGGTTCCATCTCAATACTGTCTGATGCTGGTCTTGGAATGGCCATGTTCAGTCTAGGTACTTGTCAATTCCAACATTATATTCTCCTAAGAAATTTTTGGCTTAATTATATATCATAATCATTTTTGAATATGCAGGTCTGTTCATGGCATTACAGCCTAAGCTGATTGCATGTGGAAAACGAGTTGCAACATTTTCTATGGCTGTAAGGTTCTTGACCGGTCCAGCTGTGATTGCGGCAACCTCAATAGCAATTGGTATGCGTGGAGTTCTCTTACATGTTGCAATTGTTCAGGCATGTGAAATTAAATTTACTCTATCAATTAATCAAAATATTTATTTATGCCCCTATTCTAATTAGTTGCTTATTCACATAATAATGTTTAATTTTAATTTGCAGGCTGCACTTCCCCAAGGTATTGTTCCCTTTGTGTTTGCAAAGAATACAATCTCCATCCAAATATACTCAGTACTGG

Protein sequence

>MS.gene96362.t1

MITGKDIYDVFAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISSNDPYAMNYHFLAADSLQKVVILGALFIWNTFSKNQDSLDWTITLFSLSTLPNTLVMGIPLLRAMYGDFSGNLMVQIVVLQSVIWYTLMLFLFEYRAAKLLITEQFPETAASITSFKVDSDVVSLNGREPLQTDAEIGEDGKLHVVVKRSTTNSMVSGSFNKSHLNNMTPRASNLTGVEIYSVQSSREPTPRGSSFNQTDFYAMFQSKAPSPKHGYTNSFQSNGNGDIYSMQSSKGATPRSSNFEDETLRMHKKRGGRSMSGELFNNGGSYPPPNPMLSGSTSAGTKKKDSMGGGNGNGPNNKELHMFVWSSSASPISEGNLKHAVNKAASTDFGTVDPSKYVPHENTVASKAVTELIENMSPRQRDVEIEEAVKSPYISQKKMDLEGGGDVNKNTQMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRFHIEMPSIVKGSISILSDAGLGMAMFSLGLFMALQPKLIACGKRVATFSMAVRFLTGPAVIAATSIAIGMRGVLLHVAIVQAALPQGIVPFVFAKNTISIQIYSVL