AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96631

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96631.t1 MTR_5g057990 98.706 927 10 2 1 926 1 926 0.0 1887
MS.gene96631.t1 MTR_1g110980 80.377 902 171 3 26 926 28 924 0.0 1541
MS.gene96631.t1 MTR_1g111000 75.719 939 213 5 1 926 1 937 0.0 1487
MS.gene96631.t1 MTR_3g096870 29.167 720 385 20 188 859 217 859 2.63e-82 285
MS.gene96631.t1 MTR_5g026610 30.046 649 372 17 178 816 81 657 1.83e-75 266
MS.gene96631.t1 MTR_5g026610 30.200 649 371 18 178 816 144 720 3.11e-75 266
MS.gene96631.t1 MTR_5g026610 30.200 649 371 18 178 816 81 657 5.09e-75 266
MS.gene96631.t1 MTR_5g026610 30.200 649 371 18 178 816 144 720 7.98e-75 266
MS.gene96631.t1 MTR_5g026610 30.200 649 371 18 178 816 184 760 2.64e-74 265
MS.gene96631.t1 MTR_5g026610 31.535 482 264 12 339 816 2 421 6.72e-59 216
MS.gene96631.t1 MTR_6g014900 64.706 51 18 0 639 689 82 132 1.69e-15 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96631.t1 AT1G68560 75.252 893 210 4 35 926 31 913 0.0 1439
MS.gene96631.t1 AT3G45940 64.635 919 253 9 11 926 4 853 0.0 1225
MS.gene96631.t1 AT5G11720 45.161 930 459 14 12 925 7 901 0.0 813
MS.gene96631.t1 AT5G63840 29.372 749 420 18 148 859 216 892 6.67e-87 298
MS.gene96631.t1 AT5G63840 29.372 749 420 18 148 859 189 865 1.02e-86 298
MS.gene96631.t1 AT3G23640 34.168 559 278 17 271 818 238 717 7.14e-84 292
MS.gene96631.t1 AT3G23640 34.168 559 278 17 271 818 169 648 7.52e-84 291
MS.gene96631.t1 AT3G23640 34.168 559 278 17 271 818 169 648 7.52e-84 291

Find 247 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATGCGCTTCGTAGTTTA+AGG 0.142427 5.2:+49804240 None:intergenic
ACGATAGCCTTGACCAATTT+TGG 0.159411 5.2:+49808476 None:intergenic
CTTTGCAATGACATGGAAAA+TGG 0.161209 5.2:-49803489 MS.gene96631:CDS
AATCTTAATGCTGATTTATA+TGG 0.165923 5.2:-49807637 MS.gene96631:CDS
CCGTTTCCAAGCTTCATTTC+TGG 0.183467 5.2:+49803815 None:intergenic
AAGGAACATGGGAGAATTTA+AGG 0.193751 5.2:-49804516 MS.gene96631:CDS
ACCCACCAATTTACCGTCTT+TGG 0.197873 5.2:+49804967 None:intergenic
TTTGCATGATCTCTTGAAAA+TGG 0.216652 5.2:+49804364 None:intergenic
TCTTTGACTTATAAGGTTAT+TGG 0.219457 5.2:-49807508 MS.gene96631:CDS
CCTAAAGATGCATCTTTATA+TGG 0.220928 5.2:-49807745 MS.gene96631:CDS
GACCAGCTGCTATGCCTTAT+TGG 0.221055 5.2:-49807408 MS.gene96631:CDS
AATATCAGGGCCATAGATTT+TGG 0.228691 5.2:+49808389 None:intergenic
TTCTTGGCTCAAGTGTGGCC+TGG 0.233420 5.2:-49805018 MS.gene96631:CDS
ATGTTGAATTTCGGTATATT+TGG 0.235345 5.2:-49804478 MS.gene96631:CDS
AGGAACTTCTTTGACTTATA+AGG 0.239990 5.2:-49807515 MS.gene96631:CDS
TCTTGGCTCAAGTGTGGCCT+GGG 0.250408 5.2:-49805017 MS.gene96631:CDS
TCAGTTGTATATAAAGTATA+AGG 0.253421 5.2:+49807673 None:intergenic
TTTGGACATATCGTGTTCTT+TGG 0.265426 5.2:+49804847 None:intergenic
TCAATCCAAAGACGGTAAAT+TGG 0.265436 5.2:-49804972 MS.gene96631:CDS
ACCCCTGATGGTGCCCTTAT+TGG 0.269470 5.2:-49808435 MS.gene96631:CDS
GCTATGCCTTATTGGGCTTT+TGG 0.269822 5.2:-49807400 MS.gene96631:intron
TCCTCAAAGGCCACCAAAAT+TGG 0.270256 5.2:-49808489 MS.gene96631:CDS
GTCATTATTGACCCTGGAAT+TGG 0.270891 5.2:-49805114 MS.gene96631:CDS
CTGAAGAACTTTGCAATAGA+TGG 0.274848 5.2:-49804408 MS.gene96631:CDS
CAAGAAATGCTTTAGGTATA+AGG 0.280440 5.2:-49804288 MS.gene96631:CDS
TTAGATGGAAAACCACTAAT+TGG 0.283753 5.2:-49803629 MS.gene96631:CDS
TTCAAGAAGTTTAGAAGCTT+TGG 0.286291 5.2:+49805168 None:intergenic
GAAGCTTCAAATTTCTGTTC+TGG 0.290500 5.2:-49804883 MS.gene96631:CDS
TTGAAAACAAGTGAACTAAA+TGG 0.291574 5.2:+49807799 None:intergenic
AATGGTGGTGGTTGTTCTCT+TGG 0.296023 5.2:+49807982 None:intergenic
AGATGCATCTTTATATGGTT+TGG 0.300835 5.2:-49807740 MS.gene96631:CDS
AACCTAAGAAGGGGAATATC+AGG 0.302044 5.2:+49808375 None:intergenic
ATTGGTAAAGCTCTTGTCTT+GGG 0.307685 5.2:+49804332 None:intergenic
GTACGAAGGTGAACCTTTCT+TGG 0.313386 5.2:-49805034 MS.gene96631:CDS
TTTCCTAAGGTTTGTGGTAA+TGG 0.313549 5.2:+49807964 None:intergenic
TGGATCTCATCCTATGTATA+TGG 0.322901 5.2:-49807617 MS.gene96631:CDS
GTGGTTGTTCTCTTGGGATA+AGG 0.326394 5.2:+49807989 None:intergenic
CCTTACAAGATAAACGCTTC+TGG 0.335424 5.2:-49804754 MS.gene96631:CDS
GATGCATCTTTATATGGTTT+GGG 0.338606 5.2:-49807739 MS.gene96631:CDS
GCCCTGATATTCCCCTTCTT+AGG 0.339169 5.2:-49808377 MS.gene96631:CDS
TTTGGACGAGGGTAGTTCTT+TGG 0.339509 5.2:+49805186 None:intergenic
AACAAGGAGGTGTGAAAGTT+TGG 0.339571 5.2:-49803757 MS.gene96631:CDS
GATCAATATACTACTTTGAT+TGG 0.341640 5.2:-49807433 MS.gene96631:CDS
ACCAGCTGCTATGCCTTATT+GGG 0.344317 5.2:-49807407 MS.gene96631:CDS
TCATTATTGACCCTGGAATT+GGG 0.345196 5.2:-49805113 MS.gene96631:CDS
CATCCTGGTCCTGTTCCATT+TGG 0.345366 5.2:+49804829 None:intergenic
CCATATAAAGATGCATCTTT+AGG 0.345622 5.2:+49807745 None:intergenic
AGGATCGTCCCATCTTGTTT+TGG 0.347446 5.2:+49804777 None:intergenic
CCAGAAGCGTTTATCTTGTA+AGG 0.347793 5.2:+49804754 None:intergenic
ATATCCACAATGTTGAATTT+CGG 0.352326 5.2:-49804487 MS.gene96631:CDS
CTGTTATGTGTACTCTTAAT+CGG 0.353456 5.2:+49808046 None:intergenic
GTGGACCGCGACAAAATAAA+AGG 0.354551 5.2:+49804586 None:intergenic
GCAACTCACAAGGGTCTTCT+TGG 0.356281 5.2:-49804625 MS.gene96631:CDS
AACCAGAAAACCAAAATCTA+TGG 0.362540 5.2:-49808399 MS.gene96631:CDS
TACTTCTGAACATGTGCATT+TGG 0.366445 5.2:-49803585 MS.gene96631:CDS
CGGTCCACTTATGTTGGTTC+GGG 0.366968 5.2:-49804571 MS.gene96631:CDS
GTCTTTGGATTGAGAAAATC+AGG 0.367465 5.2:+49804982 None:intergenic
TATGATGCTCATAGTATCTA+TGG 0.368905 5.2:-49804664 MS.gene96631:CDS
CCTTTGGTATACACCATAAC+TGG 0.369803 5.2:+49805083 None:intergenic
CATGAACTTGTACCTGTTGA+CGG 0.370916 5.2:-49804925 MS.gene96631:CDS
ATTGATTCAATTTCTGTGTT+GGG 0.371345 5.2:-49803689 MS.gene96631:CDS
TTGTTGAAATCTCAAGATAT+TGG 0.372770 5.2:+49807773 None:intergenic
GTGGCTTCACTTGAGTTAGA+TGG 0.373357 5.2:-49803644 MS.gene96631:CDS
CTGGAGTTAACCCCAATTCC+AGG 0.374518 5.2:+49805102 None:intergenic
TAAGTTGAAGGAGACCAATA+AGG 0.376052 5.2:+49808421 None:intergenic
ATCATACCAAAAGCCCAATA+AGG 0.377929 5.2:+49807394 None:intergenic
GAATACTCTGAGACTTCAAT+AGG 0.380490 5.2:+49807928 None:intergenic
ATTGAAGTCTCAGAGTATTC+AGG 0.384713 5.2:-49807925 MS.gene96631:CDS
GATATCCCCATCTGCATTGA+TGG 0.387246 5.2:+49805325 None:intergenic
TTCAATTTCTGTGTTGGGAT+TGG 0.388474 5.2:-49803684 MS.gene96631:CDS
GCGGTCCACTTATGTTGGTT+CGG 0.394005 5.2:-49804572 MS.gene96631:CDS
TTGTACCTGTTGACGGCCTA+TGG 0.396352 5.2:-49804918 MS.gene96631:CDS
ATGGTGGTGGTTGTTCTCTT+GGG 0.398455 5.2:+49807983 None:intergenic
CTCCTTCTGATGCGCCTGCC+GGG 0.400586 5.2:+49803876 None:intergenic
CACACTCATTGTAACATTCC+CGG 0.403974 5.2:-49803894 MS.gene96631:CDS
AACTACGAAGCGCATGTTAG+TGG 0.404979 5.2:-49804235 MS.gene96631:CDS
TAGTTTAAGGTGTAAAGATA+TGG 0.405653 5.2:+49804253 None:intergenic
AGTTGAAGTTGAGTTGAAAA+GGG 0.409807 5.2:+49807831 None:intergenic
AAGTTGAAGTTGAGTTGAAA+AGG 0.411882 5.2:+49807830 None:intergenic
AAGGGTCTTCTTGGACTTGA+AGG 0.413515 5.2:-49804616 MS.gene96631:CDS
ACACCTGACAAGCCAATTAG+TGG 0.413630 5.2:+49803617 None:intergenic
TCTCCTTCTGATGCGCCTGC+CGG 0.414253 5.2:+49803875 None:intergenic
AAATCCCACTTGATGTGATC+TGG 0.419135 5.2:-49805254 MS.gene96631:CDS
AGGGTAGTTCTTTGGATTCA+AGG 0.420050 5.2:+49805194 None:intergenic
TGGAACTTTCCTAAGGTTTG+TGG 0.421087 5.2:+49807958 None:intergenic
CAAAGTTCTTCAGTTGGTTG+TGG 0.425327 5.2:+49804418 None:intergenic
CAATCAGCAAGAAATGCTTT+AGG 0.431744 5.2:-49804295 MS.gene96631:CDS
ATCAATCCACCTTGCTGCAT+TGG 0.432382 5.2:+49803944 None:intergenic
AAGAAAAGTGGTCTTGCAAT+TGG 0.435508 5.2:+49804208 None:intergenic
CAGATGCAAACAAGCAAAGA+TGG 0.439003 5.2:-49808026 MS.gene96631:CDS
TATATGGATCTGAGAAATAA+TGG 0.439740 5.2:-49807601 MS.gene96631:CDS
TTCTTGGACTTGAAGGCAAA+AGG 0.441950 5.2:-49804609 MS.gene96631:CDS
TCTCTTGGGATAAGGTTGTA+TGG 0.443474 5.2:+49807997 None:intergenic
TTGACTTATAAGGTTATTGG+TGG 0.444386 5.2:-49807505 MS.gene96631:CDS
AAACCACTAATTGGCTTGTC+AGG 0.446974 5.2:-49803620 MS.gene96631:CDS
GCAAGGTGGATTGATCTCTA+AGG 0.447708 5.2:-49803936 MS.gene96631:CDS
AGACCAATAAGGGCACCATC+AGG 0.448219 5.2:+49808432 None:intergenic
ACTCCAAGACACCGTTATAG+TGG 0.450821 5.2:+49804686 None:intergenic
TGAAAACAAGTGAACTAAAT+GGG 0.454745 5.2:+49807800 None:intergenic
ATTGGGGTTAACTCCAGTTA+TGG 0.456204 5.2:-49805096 MS.gene96631:CDS
TTGCATGATCTCTTGAAAAT+GGG 0.465416 5.2:+49804365 None:intergenic
ACCAGGATGGATATGTTGCT+TGG 0.465580 5.2:-49804815 MS.gene96631:CDS
CATTGTTTCCTCCCGGTAGT+TGG 0.466389 5.2:-49804078 MS.gene96631:CDS
CATCGTTGGCTAAACCCCTT+TGG 0.466924 5.2:+49805067 None:intergenic
GTTGGTACAGTTTACTCGAT+TGG 0.473073 5.2:-49804060 MS.gene96631:CDS
TATTGATTCAATTTCTGTGT+TGG 0.473152 5.2:-49803690 MS.gene96631:CDS
CTGGAACGACGATGATCATA+TGG 0.474710 5.2:-49805235 MS.gene96631:CDS
ACTCACACCATCACATCAAC+AGG 0.478651 5.2:-49804037 MS.gene96631:CDS
TCAATCCATAGGCCGTCAAC+AGG 0.479710 5.2:+49804913 None:intergenic
CGGTATATTTGGTGTTCCAA+TGG 0.480390 5.2:-49804467 MS.gene96631:CDS
AAAGTTCTTCAGTTGGTTGT+GGG 0.482195 5.2:+49804419 None:intergenic
TCGTAACATTTGGTGTAAGA+TGG 0.482559 5.2:+49804178 None:intergenic
ATATTTGGTGTTCCAATGGT+TGG 0.485273 5.2:-49804463 MS.gene96631:CDS
ACGATATGTCCAAATGGAAC+AGG 0.485380 5.2:-49804838 MS.gene96631:CDS
TTGGGATTGGATGGAAGTGT+TGG 0.491039 5.2:-49803671 MS.gene96631:CDS
CATTGGTAAAGCTCTTGTCT+TGG 0.492147 5.2:+49804331 None:intergenic
AATACTCTGAGACTTCAATA+GGG 0.492896 5.2:+49807929 None:intergenic
CTTCAGATGAAAATAGAAGA+AGG 0.497979 5.2:+49808520 None:intergenic
TTTCTCAGATCCATATACAT+AGG 0.497998 5.2:+49807607 None:intergenic
CAGTTATGGTGTATACCAAA+GGG 0.499204 5.2:-49805082 MS.gene96631:CDS
AGTGCTGACGTCGTAACATT+TGG 0.499258 5.2:+49804168 None:intergenic
TTTGCAATGACATGGAAAAT+GGG 0.500725 5.2:-49803488 MS.gene96631:CDS
GGTAAATTTGCTTTAGACAA+AGG 0.501257 5.2:-49803719 MS.gene96631:CDS
CATCAGAAGGAGATGCTAAA+GGG 0.502978 5.2:-49803865 MS.gene96631:CDS
ACTTAGCATAGAACCTAAGA+AGG 0.505923 5.2:+49808364 None:intergenic
TCAGGAAAGTTTACTGCCCC+AGG 0.509380 5.2:+49805000 None:intergenic
AAGACAAGAGCTTTACCAAT+GGG 0.512360 5.2:-49804329 MS.gene96631:CDS
TGCAATAGATGGATTGAAGT+TGG 0.513700 5.2:-49804397 MS.gene96631:CDS
GTACTTGATGAAAACATCGT+TGG 0.516123 5.2:+49805053 None:intergenic
GAACTTCCAGAAATGAAGCT+TGG 0.516701 5.2:-49803821 MS.gene96631:CDS
CAGTTGTATATAAAGTATAA+GGG 0.516738 5.2:+49807674 None:intergenic
ACCATCAGGGGTCTCTTCAA+TGG 0.517038 5.2:+49808446 None:intergenic
ACCAATAAGGGCACCATCAG+GGG 0.519110 5.2:+49808434 None:intergenic
ATGGTTGGTTCCGACATATG+TGG 0.520697 5.2:-49804448 MS.gene96631:CDS
CCAGAAATGAAGCTTGGAAA+CGG 0.521555 5.2:-49803815 MS.gene96631:CDS
CAGGATTCCATCAATGCAGA+TGG 0.521721 5.2:-49805332 MS.gene96631:CDS
TTGTCGCGGTCCACTTATGT+TGG 0.522950 5.2:-49804577 MS.gene96631:CDS
GTTATAGTGGGTTGCACTAG+TGG 0.522996 5.2:+49804699 None:intergenic
AACCTTTCTTGGCTCAAGTG+TGG 0.523753 5.2:-49805023 MS.gene96631:CDS
AAATATGCTGCGCATTGGAC+TGG 0.524565 5.2:-49804547 MS.gene96631:CDS
GCCCAATAAGGCATAGCAGC+TGG 0.525990 5.2:+49807406 None:intergenic
TTTGCCCGAACCAACATAAG+TGG 0.526839 5.2:+49804567 None:intergenic
TCAGTCAAAAGAAAATCAAA+TGG 0.527251 5.2:-49807859 MS.gene96631:CDS
CATTGGACTGGTGACAATCA+AGG 0.527676 5.2:-49804535 MS.gene96631:CDS
AAGGTTTGTGGTAATGGTGG+TGG 0.529787 5.2:+49807970 None:intergenic
TCAACCACATTCAAAGGAGT+TGG 0.530165 5.2:+49807454 None:intergenic
CCACCATTACCACAAACCTT+AGG 0.531410 5.2:-49807967 MS.gene96631:CDS
CGTAACATTTGGTGTAAGAT+GGG 0.532862 5.2:+49804179 None:intergenic
AAGTTGAAGGAGACCAATAA+GGG 0.534621 5.2:+49808422 None:intergenic
TGTCCAAATGGAACAGGACC+AGG 0.534970 5.2:-49804832 MS.gene96631:CDS
CATTATTGACCCTGGAATTG+GGG 0.536616 5.2:-49805112 MS.gene96631:CDS
ATCCAAAGACGGTAAATTGG+TGG 0.538707 5.2:-49804969 MS.gene96631:CDS
TACATTGTCATTATTGACCC+TGG 0.538902 5.2:-49805120 MS.gene96631:CDS
AGAACATCGCCAAAACAAGA+TGG 0.538993 5.2:-49804786 MS.gene96631:CDS
ATTTCTGTGTTGGGATTGGA+TGG 0.539255 5.2:-49803680 MS.gene96631:CDS
CTATTGCAAAGTTCTTCAGT+TGG 0.540147 5.2:+49804412 None:intergenic
AAGAACACGATATGTCCAAA+TGG 0.540149 5.2:-49804844 MS.gene96631:CDS
GTTGTTGAACAGTAATGGAA+TGG 0.541632 5.2:-49807551 MS.gene96631:CDS
TCCAAGCAACATATCCATCC+TGG 0.543677 5.2:+49804814 None:intergenic
GCATCAGAAGGAGATGCTAA+AGG 0.544833 5.2:-49803866 MS.gene96631:CDS
GGCCACACTTGAGCCAAGAA+AGG 0.545802 5.2:+49805021 None:intergenic
GTGAAAGCATTGTTTCCTCC+CGG 0.547809 5.2:-49804085 MS.gene96631:CDS
ATCAGTTGTGGAAGATGTTG+TGG 0.549097 5.2:-49805295 MS.gene96631:CDS
AAGACCCTTGTGAGTTGCGA+CGG 0.550455 5.2:+49804630 None:intergenic
TTCCCGGCAGGCGCATCAGA+AGG 0.550812 5.2:-49803878 MS.gene96631:CDS
TATTGATCAACCACATTCAA+AGG 0.551213 5.2:+49807448 None:intergenic
GATGGGAAAGTGAAGAAAAG+TGG 0.551252 5.2:+49804196 None:intergenic
GAGTAAACTGTACCAACTAC+CGG 0.552239 5.2:+49804066 None:intergenic
TGGGTAAAATCCACATATGT+CGG 0.552361 5.2:+49804438 None:intergenic
CGGGCAAATATGCTGCGCAT+TGG 0.552633 5.2:-49804552 MS.gene96631:CDS
TGGACCAACTCCTTTGAATG+TGG 0.552956 5.2:-49807458 MS.gene96631:CDS
TTCAGATGAAAATAGAAGAA+GGG 0.555350 5.2:+49808521 None:intergenic
CTGGTGACAATCAAGGAACA+TGG 0.556321 5.2:-49804528 MS.gene96631:CDS
ACTAGTGCAACCCACTATAA+CGG 0.556439 5.2:-49804697 MS.gene96631:CDS
ATATCTCCGGTGCTCGAACA+AGG 0.557999 5.2:-49804118 MS.gene96631:CDS
GACCAATAAGGGCACCATCA+GGG 0.558124 5.2:+49808433 None:intergenic
CCTAAGGTTTGTGGTAATGG+TGG 0.558277 5.2:+49807967 None:intergenic
CATATGTCGGAACCAACCAT+TGG 0.559566 5.2:+49804451 None:intergenic
AAGCAGTCTCATGATATCTC+CGG 0.562483 5.2:-49804131 MS.gene96631:CDS
GCAATCCGTCGCAACTCACA+AGG 0.563418 5.2:-49804635 MS.gene96631:CDS
CTTCATTCATGTCAATCCAT+AGG 0.563835 5.2:+49804902 None:intergenic
AGATGCAAACAAGCAAAGAT+GGG 0.564971 5.2:-49808025 MS.gene96631:CDS
TCTGGAATACAAGCTCCAAT+CGG 0.565528 5.2:-49804736 MS.gene96631:CDS
GGATGGAAGTGTTGGAGCAG+TGG 0.570985 5.2:-49803663 MS.gene96631:CDS
CTTGGCTCAAGTGTGGCCTG+GGG 0.574631 5.2:-49805016 MS.gene96631:CDS
TGAACATTGACCACATGAAG+AGG 0.574774 5.2:+49803989 None:intergenic
AAGTTTAGAAGCTTTGGACG+AGG 0.575396 5.2:+49805174 None:intergenic
CCAGTTATGGTGTATACCAA+AGG 0.580821 5.2:-49805083 MS.gene96631:CDS
AGGATTCCATCAATGCAGAT+GGG 0.583052 5.2:-49805331 MS.gene96631:CDS
AACCCACTATAACGGTGTCT+TGG 0.585133 5.2:-49804689 MS.gene96631:CDS
TTGGTAAAGCTCTTGTCTTG+GGG 0.587218 5.2:+49804333 None:intergenic
ATATCACAATCTATCAGTTG+TGG 0.592012 5.2:-49805307 MS.gene96631:CDS
CTTAGCATAGAACCTAAGAA+GGG 0.592875 5.2:+49808365 None:intergenic
TCCAAAGACGGTAAATTGGT+GGG 0.594309 5.2:-49804968 MS.gene96631:CDS
TATAAAGTATAAGGGTCACT+TGG 0.594372 5.2:+49807682 None:intergenic
TGGAGTTAACCCCAATTCCA+GGG 0.596103 5.2:+49805103 None:intergenic
AGTTTAGAAGCTTTGGACGA+GGG 0.596956 5.2:+49805175 None:intergenic
TGAAGCTAGTTCTTCCTCAA+AGG 0.597050 5.2:-49808502 MS.gene96631:CDS
TTGAACAAGATACACAGCAT+TGG 0.600111 5.2:-49805150 MS.gene96631:CDS
CTCATTGTAACATTCCCGGC+AGG 0.600210 5.2:-49803890 MS.gene96631:CDS
CATTTGGAAGGTGAAGGAAA+TGG 0.600808 5.2:-49803569 MS.gene96631:CDS
TCTGAACATGTGCATTTGGA+AGG 0.603305 5.2:-49803581 MS.gene96631:CDS
GAACATCGCCAAAACAAGAT+GGG 0.603407 5.2:-49804785 MS.gene96631:CDS
ATTGAGCAACTGAATCCCAT+TGG 0.605061 5.2:+49804314 None:intergenic
TCGTTCCAGATCACATCAAG+TGG 0.605887 5.2:+49805249 None:intergenic
ACCTAAGAAGGGGAATATCA+GGG 0.608020 5.2:+49808376 None:intergenic
TGTTGTGGATAGTTACAAGA+AGG 0.610027 5.2:-49805280 MS.gene96631:CDS
TATACCGAAATTCAACATTG+TGG 0.611148 5.2:+49804483 None:intergenic
CTATATGCTAGTGTCAAACA+AGG 0.612842 5.2:-49803773 MS.gene96631:CDS
ACTTGATGCACCTCTTCATG+TGG 0.619411 5.2:-49803999 MS.gene96631:CDS
CTCCAAGACACCGTTATAGT+GGG 0.622378 5.2:+49804687 None:intergenic
AAGGCCACCAAAATTGGTCA+AGG 0.623219 5.2:-49808483 MS.gene96631:CDS
CAAGACAAGAGCTTTACCAA+TGG 0.624512 5.2:-49804330 MS.gene96631:CDS
GGATATAATTTAATCCCATG+TGG 0.629764 5.2:+49807703 None:intergenic
GAAGCGTTTATCTTGTAAGG+AGG 0.630030 5.2:+49804757 None:intergenic
AGTTTGGTCAGAAGTTCAAG+AGG 0.635859 5.2:-49803741 MS.gene96631:CDS
AGTTCCGCCTGTTGATGTGA+TGG 0.636334 5.2:+49804030 None:intergenic
ATGGATCTGAGAAATAATGG+TGG 0.637533 5.2:-49807598 MS.gene96631:CDS
TACAATGAGTGTGAAGGGTG+TGG 0.638401 5.2:+49803904 None:intergenic
AGTAAACTGTACCAACTACC+GGG 0.640442 5.2:+49804067 None:intergenic
AGAGGGTTGAGCATTCCTGT+TGG 0.649091 5.2:-49803518 MS.gene96631:CDS
ACTGTGATGGTAGCTTTGAG+AGG 0.649524 5.2:-49803536 MS.gene96631:CDS
CAGGTACAAGTTCATGAAAG+CGG 0.653641 5.2:+49804932 None:intergenic
GTTTGGTCAGAAGTTCAAGA+GGG 0.655783 5.2:-49803740 MS.gene96631:CDS
TCCATTGAAGAGACCCCTGA+TGG 0.658746 5.2:-49808447 MS.gene96631:CDS
CAATCCGTCGCAACTCACAA+GGG 0.662202 5.2:-49804634 MS.gene96631:CDS
CTGTGATGGTAGCTTTGAGA+GGG 0.662336 5.2:-49803535 MS.gene96631:CDS
GAATGTTACAATGAGTGTGA+AGG 0.662580 5.2:+49803898 None:intergenic
TGGTGACAATCAAGGAACAT+GGG 0.663893 5.2:-49804527 MS.gene96631:CDS
TTAGCATAGAACCTAAGAAG+GGG 0.663933 5.2:+49808366 None:intergenic
AACGACGATGATCATATGGA+CGG 0.669594 5.2:-49805231 MS.gene96631:CDS
CAAATGGAACAGGACCAGGA+TGG 0.669712 5.2:-49804828 MS.gene96631:CDS
AATGTTACAATGAGTGTGAA+GGG 0.670552 5.2:+49803899 None:intergenic
CGTTCCAGATCACATCAAGT+GGG 0.675853 5.2:+49805250 None:intergenic
GGAGAGAATACACAACCACA+TGG 0.676026 5.2:-49807718 MS.gene96631:CDS
CATAGAAATGCTAAACTGTG+AGG 0.677071 5.2:+49808564 None:intergenic
AGTTATGGTGTATACCAAAG+GGG 0.677346 5.2:-49805081 MS.gene96631:CDS
CACACCATCACATCAACAGG+CGG 0.689960 5.2:-49804034 MS.gene96631:CDS
GGATTCCATCAATGCAGATG+GGG 0.692287 5.2:-49805330 MS.gene96631:CDS
ACAATTCTACCAATGCAGCA+AGG 0.692934 5.2:-49803953 MS.gene96631:CDS
GTACAAGTTCATGAAAGCGG+CGG 0.692964 5.2:+49804935 None:intergenic
ATTCTACCAATGCAGCAAGG+TGG 0.698787 5.2:-49803950 MS.gene96631:CDS
TGGTGAAAGTAAGACTGTGA+TGG 0.700931 5.2:-49803549 MS.gene96631:CDS
GAGAGAATACACAACCACAT+GGG 0.709781 5.2:-49807717 MS.gene96631:CDS
CATGTGCATTTGGAAGGTGA+AGG 0.717327 5.2:-49803575 MS.gene96631:CDS
TATGCTAGTGTCAAACAAGG+AGG 0.726500 5.2:-49803770 MS.gene96631:CDS
AAACTGTACCAACTACCGGG+AGG 0.768178 5.2:+49804070 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTTGTATTAAATTAG+AGG + chr5.2:49805207-49805226 None:intergenic 10.0%
!!! CAAATTTAAAATAAAAAAAG+TGG + chr5.2:49805183-49805202 None:intergenic 10.0%
!!! TTACTTCATTTTATTTATTT+TGG - chr5.2:49806286-49806305 MS.gene96631:intron 10.0%
!! AAAAACAAAAATATCAATCA+TGG - chr5.2:49805318-49805337 MS.gene96631:CDS 15.0%
!! AAATGTTAAAAATGATATCA+CGG + chr5.2:49805390-49805409 None:intergenic 15.0%
!! AATCTAACAATTAACAAAAA+GGG + chr5.2:49804798-49804817 None:intergenic 15.0%
!! ATTTACTATCATATATTACT+TGG + chr5.2:49805150-49805169 None:intergenic 15.0%
!! TAATCTAACAATTAACAAAA+AGG + chr5.2:49804799-49804818 None:intergenic 15.0%
!! TTAATTGTTAGATTAAAAGA+AGG - chr5.2:49804804-49804823 MS.gene96631:CDS 15.0%
!!! GAAAAATATCTTCATATTTT+TGG + chr5.2:49805443-49805462 None:intergenic 15.0%
!!! TTTGATTCTTTTATAAAGTT+TGG - chr5.2:49805629-49805648 MS.gene96631:intron 15.0%
!! AAAAAATAACTATGAGTCAT+TGG + chr5.2:49805577-49805596 None:intergenic 20.0%
!! AATGCTTAAATGATAAACTT+TGG - chr5.2:49804870-49804889 MS.gene96631:CDS 20.0%
!! ATAAAGTTACAGAAAATCTA+AGG + chr5.2:49806572-49806591 None:intergenic 20.0%
!! ATAGGTACAATTAACAATAT+TGG + chr5.2:49803963-49803982 None:intergenic 20.0%
!! CAGTTGTATATAAAGTATAA+GGG + chr5.2:49804386-49804405 None:intergenic 20.0%
!! TCAGTTGTATATAAAGTATA+AGG + chr5.2:49804387-49804406 None:intergenic 20.0%
!! TCCAAAAATAATTAATCAGT+TGG - chr5.2:49805250-49805269 MS.gene96631:CDS 20.0%
!!! AAGTTTGTTCTGTATTTTTT+AGG - chr5.2:49805350-49805369 MS.gene96631:intron 20.0%
!!! AATCTTAATGCTGATTTATA+TGG - chr5.2:49804420-49804439 MS.gene96631:CDS 20.0%
!!! AATGACTCATAGTTATTTTT+TGG - chr5.2:49805576-49805595 MS.gene96631:intron 20.0%
!!! AATTTTACACTTAAACACAA+TGG + chr5.2:49806113-49806132 None:intergenic 20.0%
!!! ACCAACTGATTAATTATTTT+TGG + chr5.2:49805254-49805273 None:intergenic 20.0%
!!! AGTTTTGTATTTCAAAAAGT+TGG + chr5.2:49805866-49805885 None:intergenic 20.0%
!!! ATGACTCATAGTTATTTTTT+GGG - chr5.2:49805577-49805596 MS.gene96631:intron 20.0%
!!! TAGGTAATTGAATACTTTTT+TGG - chr5.2:49805740-49805759 MS.gene96631:intron 20.0%
!!! TATTTTTTAGGATTCATGTA+AGG - chr5.2:49805362-49805381 MS.gene96631:intron 20.0%
!!! TGAAAATAATTCAACCTTTT+TGG - chr5.2:49805819-49805838 MS.gene96631:intron 20.0%
!!! TTTTCACATTATTATCAGTA+TGG + chr5.2:49803832-49803851 None:intergenic 20.0%
! AAACTATAAAGCAATACATG+TGG - chr5.2:49805881-49805900 MS.gene96631:intron 25.0%
! ACCTGTATATTAATGTATGA+TGG - chr5.2:49805600-49805619 MS.gene96631:intron 25.0%
! AGTAATAATGAAAAACGTGT+AGG + chr5.2:49805932-49805951 None:intergenic 25.0%
! ATATCCACAATGTTGAATTT+CGG - chr5.2:49807570-49807589 MS.gene96631:CDS 25.0%
! ATCATGCTTTAATTGCAAAA+GGG - chr5.2:49806661-49806680 MS.gene96631:intron 25.0%
! ATCATTTAAGCATTCACATA+TGG + chr5.2:49804864-49804883 None:intergenic 25.0%
! ATCATTTCACACACAAAATA+TGG - chr5.2:49805778-49805797 MS.gene96631:intron 25.0%
! ATGTTGAATTTCGGTATATT+TGG - chr5.2:49807579-49807598 MS.gene96631:CDS 25.0%
! CCTGTATATTAATGTATGAT+GGG - chr5.2:49805601-49805620 MS.gene96631:intron 25.0%
! CTGTATATTAATGTATGATG+GGG - chr5.2:49805602-49805621 MS.gene96631:intron 25.0%
! GATCAATATACTACTTTGAT+TGG - chr5.2:49804624-49804643 MS.gene96631:CDS 25.0%
! TAATGTAATCTAACATGTCA+TGG - chr5.2:49803864-49803883 MS.gene96631:CDS 25.0%
! TATATGGATCTGAGAAATAA+TGG - chr5.2:49804456-49804475 MS.gene96631:CDS 25.0%
! TCAGTCAAAAGAAAATCAAA+TGG - chr5.2:49804198-49804217 MS.gene96631:CDS 25.0%
! TGAAAACAAGTGAACTAAAT+GGG + chr5.2:49804260-49804279 None:intergenic 25.0%
! TGTATATTAATGTATGATGG+GGG - chr5.2:49805603-49805622 MS.gene96631:intron 25.0%
! TTCAGATGAAAATAGAAGAA+GGG + chr5.2:49803539-49803558 None:intergenic 25.0%
! TTGAAAACAAGTGAACTAAA+TGG + chr5.2:49804261-49804280 None:intergenic 25.0%
! TTGTTGAAATCTCAAGATAT+TGG + chr5.2:49804287-49804306 None:intergenic 25.0%
! TTTACTGATATTCTCACTAT+TGG - chr5.2:49806695-49806714 MS.gene96631:intron 25.0%
!! ATTGATTCAATTTCTGTGTT+GGG - chr5.2:49808368-49808387 MS.gene96631:CDS 25.0%
!! GATATTACCAAAATCTTTTC+TGG - chr5.2:49805695-49805714 MS.gene96631:intron 25.0%
!! TAAATCTTTTCACAGTACTT+GGG - chr5.2:49806543-49806562 MS.gene96631:intron 25.0%
!! TAGTTTAAGGTGTAAAGATA+TGG + chr5.2:49807807-49807826 None:intergenic 25.0%
!! TCTTTGACTTATAAGGTTAT+TGG - chr5.2:49804549-49804568 MS.gene96631:CDS 25.0%
!! TTATCATGAGAGAATTTTCA+TGG - chr5.2:49805529-49805548 MS.gene96631:intron 25.0%
!!! AAATAAGCACTTTTTGTACA+AGG + chr5.2:49806253-49806272 None:intergenic 25.0%
!!! AACCTTTTTGGTAAAGTTTT+GGG - chr5.2:49805831-49805850 MS.gene96631:intron 25.0%
!!! TATTGATTCAATTTCTGTGT+TGG - chr5.2:49808367-49808386 MS.gene96631:CDS 25.0%
!!! TTCTTTTTTTGATATGTGTG+TGG - chr5.2:49803738-49803757 MS.gene96631:CDS 25.0%
!!! TTTGATTTTTACTTCTTCTC+TGG - chr5.2:49804579-49804598 MS.gene96631:CDS 25.0%
!!! TTTTGACTGAGAAACTAAAT+GGG + chr5.2:49804188-49804207 None:intergenic 25.0%
AACCAGAAAACCAAAATCTA+TGG - chr5.2:49803658-49803677 MS.gene96631:CDS 30.0%
AATGTTACAATGAGTGTGAA+GGG + chr5.2:49808161-49808180 None:intergenic 30.0%
ACACAATCATAGATCTGAAA+AGG + chr5.2:49805484-49805503 None:intergenic 30.0%
ACAGGATTTGCCTAATTTAA+TGG - chr5.2:49806412-49806431 MS.gene96631:intron 30.0%
AGATGCATCTTTATATGGTT+TGG - chr5.2:49804317-49804336 MS.gene96631:CDS 30.0%
AGGATTTGCCTAATTTAATG+GGG - chr5.2:49806414-49806433 MS.gene96631:intron 30.0%
ATATCACAATCTATCAGTTG+TGG - chr5.2:49806750-49806769 MS.gene96631:intron 30.0%
ATCAATCAATCACTAAGATG+TGG - chr5.2:49806086-49806105 MS.gene96631:intron 30.0%
ATCTTTCTCCCCATTAAATT+AGG + chr5.2:49806425-49806444 None:intergenic 30.0%
CAGGATTTGCCTAATTTAAT+GGG - chr5.2:49806413-49806432 MS.gene96631:intron 30.0%
CATACAAACAAGTAAACATG+AGG - chr5.2:49806447-49806466 MS.gene96631:intron 30.0%
CATCATGCTTTAATTGCAAA+AGG - chr5.2:49806660-49806679 MS.gene96631:intron 30.0%
CCATATAAAGATGCATCTTT+AGG + chr5.2:49804315-49804334 None:intergenic 30.0%
CCCATCATACATTAATATAC+AGG + chr5.2:49805604-49805623 None:intergenic 30.0%
CCTAAAGATGCATCTTTATA+TGG - chr5.2:49804312-49804331 MS.gene96631:CDS 30.0%
CTGTTATGTGTACTCTTAAT+CGG + chr5.2:49804014-49804033 None:intergenic 30.0%
CTTCAGATGAAAATAGAAGA+AGG + chr5.2:49803540-49803559 None:intergenic 30.0%
GACATTAAAAATCTTCCACA+TGG + chr5.2:49806028-49806047 None:intergenic 30.0%
GATGCATCTTTATATGGTTT+GGG - chr5.2:49804318-49804337 MS.gene96631:CDS 30.0%
GATGCATTGTGATAAACTAT+TGG - chr5.2:49804943-49804962 MS.gene96631:CDS 30.0%
GGATATAATTTAATCCCATG+TGG + chr5.2:49804357-49804376 None:intergenic 30.0%
GTAAAAACTTTGCAATGACA+TGG - chr5.2:49808561-49808580 MS.gene96631:CDS 30.0%
TAAAGATAAGCTTCCTTTGT+TGG - chr5.2:49806051-49806070 MS.gene96631:intron 30.0%
TAAATATAACCTCACTCCTT+AGG + chr5.2:49805970-49805989 None:intergenic 30.0%
TAATTTAATGGGGAGAAAGA+TGG - chr5.2:49806424-49806443 MS.gene96631:intron 30.0%
TATAAAGTATAAGGGTCACT+TGG + chr5.2:49804378-49804397 None:intergenic 30.0%
TATACCGAAATTCAACATTG+TGG + chr5.2:49807577-49807596 None:intergenic 30.0%
TATATTACTTGGTCTGAACT+CGG + chr5.2:49805139-49805158 None:intergenic 30.0%
TATGATGCTCATAGTATCTA+TGG - chr5.2:49807393-49807412 MS.gene96631:intron 30.0%
TATTGATCAACCACATTCAA+AGG + chr5.2:49804612-49804631 None:intergenic 30.0%
TCTATGATTGTGTAATACAG+TGG - chr5.2:49805491-49805510 MS.gene96631:intron 30.0%
TCTCACTATTGGTATATTAC+AGG - chr5.2:49806706-49806725 MS.gene96631:intron 30.0%
TGAAATGATATCATTCCATG+TGG + chr5.2:49805767-49805786 None:intergenic 30.0%
TTAAAAATCTTCCACATGGT+TGG + chr5.2:49806024-49806043 None:intergenic 30.0%
TTAGATGGAAAACCACTAAT+TGG - chr5.2:49808428-49808447 MS.gene96631:CDS 30.0%
TTCAAGAAGTTTAGAAGCTT+TGG + chr5.2:49806892-49806911 None:intergenic 30.0%
TTCTTACATGACCAATGTTA+AGG + chr5.2:49805086-49805105 None:intergenic 30.0%
TTGACTTATAAGGTTATTGG+TGG - chr5.2:49804552-49804571 MS.gene96631:CDS 30.0%
TTGCATGATCTCTTGAAAAT+GGG + chr5.2:49807695-49807714 None:intergenic 30.0%
TTTCTCAGATCCATATACAT+AGG + chr5.2:49804453-49804472 None:intergenic 30.0%
TTTGCAATGACATGGAAAAT+GGG - chr5.2:49808569-49808588 MS.gene96631:CDS 30.0%
TTTGCATGATCTCTTGAAAA+TGG + chr5.2:49807696-49807715 None:intergenic 30.0%
! AGGAACTTCTTTGACTTATA+AGG - chr5.2:49804542-49804561 MS.gene96631:CDS 30.0%
! ATTGCAAAGTTTTTACCAAC+AGG + chr5.2:49808557-49808576 None:intergenic 30.0%
! CAAGAAATGCTTTAGGTATA+AGG - chr5.2:49807769-49807788 MS.gene96631:CDS 30.0%
! CTAAATCTTTTCACAGTACT+TGG - chr5.2:49806542-49806561 MS.gene96631:intron 30.0%
! GGAATGGATGTGTTTTATAA+AGG - chr5.2:49804522-49804541 MS.gene96631:CDS 30.0%
! GGTAAATTTGCTTTAGACAA+AGG - chr5.2:49808338-49808357 MS.gene96631:intron 30.0%
! GTTTTTATTATTAGTGCCAG+CGG + chr5.2:49805304-49805323 None:intergenic 30.0%
! TCTTTCTATTTTGCTACCTA+AGG - chr5.2:49805951-49805970 MS.gene96631:intron 30.0%
! TGATTTTCTCAATCCAAAGA+CGG - chr5.2:49807077-49807096 MS.gene96631:intron 30.0%
! TTAGAGTGCCAAATACATTA+CGG + chr5.2:49806318-49806337 None:intergenic 30.0%
! TTTTTATTATTAGTGCCAGC+GGG + chr5.2:49805303-49805322 None:intergenic 30.0%
!! AAGTTGAAGTTGAGTTGAAA+AGG + chr5.2:49804230-49804249 None:intergenic 30.0%
!! AATACTCTGAGACTTCAATA+GGG + chr5.2:49804131-49804150 None:intergenic 30.0%
!! AGTTGAAGTTGAGTTGAAAA+GGG + chr5.2:49804229-49804248 None:intergenic 30.0%
!! CAACCTTTTTGGTAAAGTTT+TGG - chr5.2:49805830-49805849 MS.gene96631:intron 30.0%
!! CTTTTGACTGAGAAACTAAA+TGG + chr5.2:49804189-49804208 None:intergenic 30.0%
!!! AAAGATTTTGACTACACTCT+TGG - chr5.2:49806503-49806522 MS.gene96631:intron 30.0%
!!! AGACTTCAATAGGGTTTTTT+TGG + chr5.2:49804122-49804141 None:intergenic 30.0%
!!! GTTTTGTTGTTGAACAGTAA+TGG - chr5.2:49804501-49804520 MS.gene96631:CDS 30.0%
!!! GTTTTTTTGGAACTTTCCTA+AGG + chr5.2:49804109-49804128 None:intergenic 30.0%
!!! TGTACCTATTTGTTTTTTGC+AGG - chr5.2:49803974-49803993 MS.gene96631:CDS 30.0%
AAAGTTCTTCAGTTGGTTGT+GGG + chr5.2:49807641-49807660 None:intergenic 35.0%
AAGAACACGATATGTCCAAA+TGG - chr5.2:49807213-49807232 MS.gene96631:intron 35.0%
AAGACAAGAGCTTTACCAAT+GGG - chr5.2:49807728-49807747 MS.gene96631:CDS 35.0%
AAGGAACATGGGAGAATTTA+AGG - chr5.2:49807541-49807560 MS.gene96631:CDS 35.0%
AAGTTGAAGGAGACCAATAA+GGG + chr5.2:49803638-49803657 None:intergenic 35.0%
ACAACATTGATCATTTGGAC+CGG - chr5.2:49806358-49806377 MS.gene96631:intron 35.0%
ACTTAGCATAGAACCTAAGA+AGG + chr5.2:49803696-49803715 None:intergenic 35.0%
AGATGCAAACAAGCAAAGAT+GGG - chr5.2:49804032-49804051 MS.gene96631:CDS 35.0%
AGTTATGGTGTATACCAAAG+GGG - chr5.2:49806976-49806995 MS.gene96631:intron 35.0%
ATATTACTTGGTCTGAACTC+GGG + chr5.2:49805138-49805157 None:intergenic 35.0%
ATCATACCAAAAGCCCAATA+AGG + chr5.2:49804666-49804685 None:intergenic 35.0%
ATCCCACAACATTGATCATT+TGG - chr5.2:49806353-49806372 MS.gene96631:intron 35.0%
ATGGATCTGAGAAATAATGG+TGG - chr5.2:49804459-49804478 MS.gene96631:CDS 35.0%
ATGTAAGAACAAGTTGTTGC+AGG - chr5.2:49805097-49805116 MS.gene96631:CDS 35.0%
ATGTCATGGTCGTATCATAT+CGG - chr5.2:49803878-49803897 MS.gene96631:CDS 35.0%
ATTGGTAAAGCTCTTGTCTT+GGG + chr5.2:49807728-49807747 None:intergenic 35.0%
CAATCAGCAAGAAATGCTTT+AGG - chr5.2:49807762-49807781 MS.gene96631:CDS 35.0%
CAGTTATGGTGTATACCAAA+GGG - chr5.2:49806975-49806994 MS.gene96631:intron 35.0%
CATAGAAATGCTAAACTGTG+AGG + chr5.2:49803496-49803515 None:intergenic 35.0%
CATGCCTGCAAAAAACAAAT+AGG + chr5.2:49803981-49804000 None:intergenic 35.0%
CCAATGTTAAGGTGTAATGA+TGG + chr5.2:49805075-49805094 None:intergenic 35.0%
CCATCATTACACCTTAACAT+TGG - chr5.2:49805072-49805091 MS.gene96631:CDS 35.0%
CTATATGCTAGTGTCAAACA+AGG - chr5.2:49808284-49808303 MS.gene96631:intron 35.0%
CTATTGCAAAGTTCTTCAGT+TGG + chr5.2:49807648-49807667 None:intergenic 35.0%
CTGAAGAACTTTGCAATAGA+TGG - chr5.2:49807649-49807668 MS.gene96631:CDS 35.0%
CTGTCACTGTTTGTTTGATT+TGG - chr5.2:49805673-49805692 MS.gene96631:intron 35.0%
CTTAGCATAGAACCTAAGAA+GGG + chr5.2:49803695-49803714 None:intergenic 35.0%
CTTCATTCATGTCAATCCAT+AGG + chr5.2:49807158-49807177 None:intergenic 35.0%
CTTTGCAATGACATGGAAAA+TGG - chr5.2:49808568-49808587 MS.gene96631:CDS 35.0%
GAAGCTTCAAATTTCTGTTC+TGG - chr5.2:49807174-49807193 MS.gene96631:intron 35.0%
GAATGTTACAATGAGTGTGA+AGG + chr5.2:49808162-49808181 None:intergenic 35.0%
GACCCAAAACTTTACCAAAA+AGG + chr5.2:49805836-49805855 None:intergenic 35.0%
GCAGCATTTGTGATAAACTA+TGG - chr5.2:49804892-49804911 MS.gene96631:CDS 35.0%
GCATGATGCATAAGAATCTA+AGG + chr5.2:49806648-49806667 None:intergenic 35.0%
GTACTTGATGAAAACATCGT+TGG + chr5.2:49807007-49807026 None:intergenic 35.0%
GTCCAAATGATCAATGTTGT+GGG + chr5.2:49806358-49806377 None:intergenic 35.0%
GTCTTTGGATTGAGAAAATC+AGG + chr5.2:49807078-49807097 None:intergenic 35.0%
TAACACTCAACAACAAAAGC+TGG + chr5.2:49805722-49805741 None:intergenic 35.0%
TACATTGTCATTATTGACCC+TGG - chr5.2:49806937-49806956 MS.gene96631:intron 35.0%
TACTTCTGAACATGTGCATT+TGG - chr5.2:49808472-49808491 MS.gene96631:CDS 35.0%
TATAAAGCAATACATGTGGC+TGG - chr5.2:49805885-49805904 MS.gene96631:intron 35.0%
TCAATCCAAAGACGGTAAAT+TGG - chr5.2:49807085-49807104 MS.gene96631:intron 35.0%
TCAGTTAATGTCACCAACAA+AGG + chr5.2:49806067-49806086 None:intergenic 35.0%
TCATTATTGACCCTGGAATT+GGG - chr5.2:49806944-49806963 MS.gene96631:intron 35.0%
TGGATCTCATCCTATGTATA+TGG - chr5.2:49804440-49804459 MS.gene96631:CDS 35.0%
TGGGTAAAATCCACATATGT+CGG + chr5.2:49807622-49807641 None:intergenic 35.0%
TGTTGTGGATAGTTACAAGA+AGG - chr5.2:49806777-49806796 MS.gene96631:intron 35.0%
TTAGCATAGAACCTAAGAAG+GGG + chr5.2:49803694-49803713 None:intergenic 35.0%
TTCAATTTCTGTGTTGGGAT+TGG - chr5.2:49808373-49808392 MS.gene96631:CDS 35.0%
TTGAACAAGATACACAGCAT+TGG - chr5.2:49806907-49806926 MS.gene96631:intron 35.0%
TTTCCTAAGGTTTGTGGTAA+TGG + chr5.2:49804096-49804115 None:intergenic 35.0%
TTTGGACATATCGTGTTCTT+TGG + chr5.2:49807213-49807232 None:intergenic 35.0%
! AAGAAAAGTGGTCTTGCAAT+TGG + chr5.2:49807852-49807871 None:intergenic 35.0%
! AAGCACTTTTGCGAAAATTG+GGG - chr5.2:49804834-49804853 MS.gene96631:CDS 35.0%
! AATATCAGGGCCATAGATTT+TGG + chr5.2:49803671-49803690 None:intergenic 35.0%
! ATTGAAGTCTCAGAGTATTC+AGG - chr5.2:49804132-49804151 MS.gene96631:CDS 35.0%
! GATGTTTTCATCAAGTACGA+AGG - chr5.2:49807009-49807028 MS.gene96631:intron 35.0%
! GGATGTAGTTGAAAGTATAG+TGG + chr5.2:49805233-49805252 None:intergenic 35.0%
! GTCAGCACTCAATTTTTACT+CGG - chr5.2:49807903-49807922 MS.gene96631:CDS 35.0%
! GTTGTTGAACAGTAATGGAA+TGG - chr5.2:49804506-49804525 MS.gene96631:CDS 35.0%
! TAAGTTGAAGGAGACCAATA+AGG + chr5.2:49803639-49803658 None:intergenic 35.0%
! TTTTATTATTAGTGCCAGCG+GGG + chr5.2:49805302-49805321 None:intergenic 35.0%
!! ATATTTGGTGTTCCAATGGT+TGG - chr5.2:49807594-49807613 MS.gene96631:CDS 35.0%
!! CGTAACATTTGGTGTAAGAT+GGG + chr5.2:49807881-49807900 None:intergenic 35.0%
!! GAAGCACTTTTGCGAAAATT+GGG - chr5.2:49804833-49804852 MS.gene96631:CDS 35.0%
!! GAATACTCTGAGACTTCAAT+AGG + chr5.2:49804132-49804151 None:intergenic 35.0%
!! GCTATTGTTTTGTATCCGAT+TGG + chr5.2:49807339-49807358 None:intergenic 35.0%
!! TCGTAACATTTGGTGTAAGA+TGG + chr5.2:49807882-49807901 None:intergenic 35.0%
!! TGCAATAGATGGATTGAAGT+TGG - chr5.2:49807660-49807679 MS.gene96631:CDS 35.0%
!!! AGAAGCACTTTTGCGAAAAT+TGG - chr5.2:49804832-49804851 MS.gene96631:CDS 35.0%
!!! AGCTTTTGTTGTTGAGTGTT+AGG - chr5.2:49805721-49805740 MS.gene96631:intron 35.0%
!!! GAATACTTTTTTGGTCCACA+TGG - chr5.2:49805749-49805768 MS.gene96631:intron 35.0%
!!! TGGTTTTCTGGTTAAGTTGA+AGG + chr5.2:49803651-49803670 None:intergenic 35.0%
AAATCCCACTTGATGTGATC+TGG - chr5.2:49806803-49806822 MS.gene96631:intron 40.0%
AACATGCGCTTCGTAGTTTA+AGG + chr5.2:49807820-49807839 None:intergenic 40.0%
AACCTAAGAAGGGGAATATC+AGG + chr5.2:49803685-49803704 None:intergenic 40.0%
AACGACGATGATCATATGGA+CGG - chr5.2:49806826-49806845 MS.gene96631:intron 40.0%
AAGCAGTCTCATGATATCTC+CGG - chr5.2:49807926-49807945 MS.gene96631:CDS 40.0%
ACAATTCTACCAATGCAGCA+AGG - chr5.2:49808104-49808123 MS.gene96631:intron 40.0%
ACCTAAGAAGGGGAATATCA+GGG + chr5.2:49803684-49803703 None:intergenic 40.0%
ACGATATGTCCAAATGGAAC+AGG - chr5.2:49807219-49807238 MS.gene96631:intron 40.0%
ACTAGTGCAACCCACTATAA+CGG - chr5.2:49807360-49807379 MS.gene96631:intron 40.0%
AGAACATCGCCAAAACAAGA+TGG - chr5.2:49807271-49807290 MS.gene96631:intron 40.0%
AGGATTCCATCAATGCAGAT+GGG - chr5.2:49806726-49806745 MS.gene96631:intron 40.0%
AGGGTAGTTCTTTGGATTCA+AGG + chr5.2:49806866-49806885 None:intergenic 40.0%
AGTAAACTGTACCAACTACC+GGG + chr5.2:49807993-49808012 None:intergenic 40.0%
AGTTTGGTCAGAAGTTCAAG+AGG - chr5.2:49808316-49808335 MS.gene96631:intron 40.0%
ATCAGTTGTGGAAGATGTTG+TGG - chr5.2:49806762-49806781 MS.gene96631:intron 40.0%
ATCCAAAGACGGTAAATTGG+TGG - chr5.2:49807088-49807107 MS.gene96631:intron 40.0%
ATTGAGCAACTGAATCCCAT+TGG + chr5.2:49807746-49807765 None:intergenic 40.0%
ATTGGGGTTAACTCCAGTTA+TGG - chr5.2:49806961-49806980 MS.gene96631:intron 40.0%
ATTTCTGTGTTGGGATTGGA+TGG - chr5.2:49808377-49808396 MS.gene96631:CDS 40.0%
CAAAGTTCTTCAGTTGGTTG+TGG + chr5.2:49807642-49807661 None:intergenic 40.0%
CAAGACAAGAGCTTTACCAA+TGG - chr5.2:49807727-49807746 MS.gene96631:CDS 40.0%
CACACTCATTGTAACATTCC+CGG - chr5.2:49808163-49808182 MS.gene96631:intron 40.0%
CAGATGCAAACAAGCAAAGA+TGG - chr5.2:49804031-49804050 MS.gene96631:CDS 40.0%
CAGGTACAAGTTCATGAAAG+CGG + chr5.2:49807128-49807147 None:intergenic 40.0%
CATCAGAAGGAGATGCTAAA+GGG - chr5.2:49808192-49808211 MS.gene96631:intron 40.0%
CATGAACTTGTACCTGTTGA+CGG - chr5.2:49807132-49807151 MS.gene96631:intron 40.0%
CATTATTGACCCTGGAATTG+GGG - chr5.2:49806945-49806964 MS.gene96631:intron 40.0%
CATTGGTAAAGCTCTTGTCT+TGG + chr5.2:49807729-49807748 None:intergenic 40.0%
CATTTGGAAGGTGAAGGAAA+TGG - chr5.2:49808488-49808507 MS.gene96631:CDS 40.0%
CCAGAAATGAAGCTTGGAAA+CGG - chr5.2:49808242-49808261 MS.gene96631:intron 40.0%
CCAGTTATGGTGTATACCAA+AGG - chr5.2:49806974-49806993 MS.gene96631:intron 40.0%
CCTTACAAGATAAACGCTTC+TGG - chr5.2:49807303-49807322 MS.gene96631:intron 40.0%
CCTTTGGTATACACCATAAC+TGG + chr5.2:49806977-49806996 None:intergenic 40.0%
GAACATCGCCAAAACAAGAT+GGG - chr5.2:49807272-49807291 MS.gene96631:intron 40.0%
GAACTTCCAGAAATGAAGCT+TGG - chr5.2:49808236-49808255 MS.gene96631:intron 40.0%
GAGAGAATACACAACCACAT+GGG - chr5.2:49804340-49804359 MS.gene96631:CDS 40.0%
GAGTAAACTGTACCAACTAC+CGG + chr5.2:49807994-49808013 None:intergenic 40.0%
GATGGGAAAGTGAAGAAAAG+TGG + chr5.2:49807864-49807883 None:intergenic 40.0%
GGAATCCACCGTAATGTATT+TGG - chr5.2:49806307-49806326 MS.gene96631:intron 40.0%
GGTCCAAATGATCAATGTTG+TGG + chr5.2:49806359-49806378 None:intergenic 40.0%
GTCATTATTGACCCTGGAAT+TGG - chr5.2:49806943-49806962 MS.gene96631:intron 40.0%
GTTGGTACAGTTTACTCGAT+TGG - chr5.2:49807997-49808016 MS.gene96631:CDS 40.0%
GTTTGGTCAGAAGTTCAAGA+GGG - chr5.2:49808317-49808336 MS.gene96631:intron 40.0%
TATGCTAGTGTCAAACAAGG+AGG - chr5.2:49808287-49808306 MS.gene96631:intron 40.0%
TCAACCACATTCAAAGGAGT+TGG + chr5.2:49804606-49804625 None:intergenic 40.0%
TCCAAAGACGGTAAATTGGT+GGG - chr5.2:49807089-49807108 MS.gene96631:intron 40.0%
TCTCTTGGGATAAGGTTGTA+TGG + chr5.2:49804063-49804082 None:intergenic 40.0%
TCTGAACATGTGCATTTGGA+AGG - chr5.2:49808476-49808495 MS.gene96631:CDS 40.0%
TGAACATTGACCACATGAAG+AGG + chr5.2:49808071-49808090 None:intergenic 40.0%
TGGAACTTTCCTAAGGTTTG+TGG + chr5.2:49804102-49804121 None:intergenic 40.0%
TGGTGAAAGTAAGACTGTGA+TGG - chr5.2:49808508-49808527 MS.gene96631:CDS 40.0%
TGGTGACAATCAAGGAACAT+GGG - chr5.2:49807530-49807549 MS.gene96631:CDS 40.0%
TTCTTGGACTTGAAGGCAAA+AGG - chr5.2:49807448-49807467 MS.gene96631:CDS 40.0%
TTGGTAAAGCTCTTGTCTTG+GGG + chr5.2:49807727-49807746 None:intergenic 40.0%
! AACAAGGAGGTGTGAAAGTT+TGG - chr5.2:49808300-49808319 MS.gene96631:intron 40.0%
! AGCTGGACCAGAAAAGATTT+TGG + chr5.2:49805705-49805724 None:intergenic 40.0%
! ATTTTGCTACCTAAGGAGTG+AGG - chr5.2:49805958-49805977 MS.gene96631:intron 40.0%
! CTGAAAAGGCTTTGTCTCTT+TGG + chr5.2:49805470-49805489 None:intergenic 40.0%
! GAAGCGTTTATCTTGTAAGG+AGG + chr5.2:49807303-49807322 None:intergenic 40.0%
! TCTGGAATACAAGCTCCAAT+CGG - chr5.2:49807321-49807340 MS.gene96631:intron 40.0%
! TGAAGCTAGTTCTTCCTCAA+AGG - chr5.2:49803555-49803574 MS.gene96631:CDS 40.0%
!! AAACCACTAATTGGCTTGTC+AGG - chr5.2:49808437-49808456 MS.gene96631:CDS 40.0%
!! AAGTTTAGAAGCTTTGGACG+AGG + chr5.2:49806886-49806905 None:intergenic 40.0%
!! ACGATAGCCTTGACCAATTT+TGG + chr5.2:49803584-49803603 None:intergenic 40.0%
!! AGTTTAGAAGCTTTGGACGA+GGG + chr5.2:49806885-49806904 None:intergenic 40.0%
!! ATAGCCTTGACCAATTTTGG+TGG + chr5.2:49803581-49803600 None:intergenic 40.0%
!! CCAGAAGCGTTTATCTTGTA+AGG + chr5.2:49807306-49807325 None:intergenic 40.0%
!! CGGTATATTTGGTGTTCCAA+TGG - chr5.2:49807590-49807609 MS.gene96631:CDS 40.0%
!! TCAGAAGTGTCAGTACTACA+TGG - chr5.2:49803926-49803945 MS.gene96631:CDS 40.0%
!!! GGCCATAGATTTTGGTTTTC+TGG + chr5.2:49803663-49803682 None:intergenic 40.0%
!!! GTTTTAAAGCACCAACCATG+TGG - chr5.2:49806010-49806029 MS.gene96631:intron 40.0%
AAATATGCTGCGCATTGGAC+TGG - chr5.2:49807510-49807529 MS.gene96631:CDS 45.0%
AACCCACTATAACGGTGTCT+TGG - chr5.2:49807368-49807387 MS.gene96631:intron 45.0%
AACCTTTCTTGGCTCAAGTG+TGG - chr5.2:49807034-49807053 MS.gene96631:intron 45.0%
AACTACGAAGCGCATGTTAG+TGG - chr5.2:49807822-49807841 MS.gene96631:CDS 45.0%
AAGGCCACCAAAATTGGTCA+AGG - chr5.2:49803574-49803593 MS.gene96631:CDS 45.0%
AAGGGTCTTCTTGGACTTGA+AGG - chr5.2:49807441-49807460 MS.gene96631:CDS 45.0%
ACACCTGACAAGCCAATTAG+TGG + chr5.2:49808443-49808462 None:intergenic 45.0%
ACCAGGATGGATATGTTGCT+TGG - chr5.2:49807242-49807261 MS.gene96631:intron 45.0%
ACCCACCAATTTACCGTCTT+TGG + chr5.2:49807093-49807112 None:intergenic 45.0%
ACTCACACCATCACATCAAC+AGG - chr5.2:49808020-49808039 MS.gene96631:CDS 45.0%
ACTCCAAGACACCGTTATAG+TGG + chr5.2:49807374-49807393 None:intergenic 45.0%
ACTTGATGCACCTCTTCATG+TGG - chr5.2:49808058-49808077 MS.gene96631:CDS 45.0%
ATCAATCCACCTTGCTGCAT+TGG + chr5.2:49808116-49808135 None:intergenic 45.0%
ATCAATGTTGTGGGATACCC+TGG + chr5.2:49806349-49806368 None:intergenic 45.0%
ATTCTACCAATGCAGCAAGG+TGG - chr5.2:49808107-49808126 MS.gene96631:intron 45.0%
CAGGATTCCATCAATGCAGA+TGG - chr5.2:49806725-49806744 MS.gene96631:intron 45.0%
CATATGTCGGAACCAACCAT+TGG + chr5.2:49807609-49807628 None:intergenic 45.0%
CATGTGCATTTGGAAGGTGA+AGG - chr5.2:49808482-49808501 MS.gene96631:CDS 45.0%
CCACCATTACCACAAACCTT+AGG - chr5.2:49804090-49804109 MS.gene96631:CDS 45.0%
CCGTTTCCAAGCTTCATTTC+TGG + chr5.2:49808245-49808264 None:intergenic 45.0%
CGTTCCAGATCACATCAAGT+GGG + chr5.2:49806810-49806829 None:intergenic 45.0%
CTCCAAGACACCGTTATAGT+GGG + chr5.2:49807373-49807392 None:intergenic 45.0%
CTGGAACGACGATGATCATA+TGG - chr5.2:49806822-49806841 MS.gene96631:intron 45.0%
CTGGTGACAATCAAGGAACA+TGG - chr5.2:49807529-49807548 MS.gene96631:CDS 45.0%
GAGTGCCAAATACATTACGG+TGG + chr5.2:49806315-49806334 None:intergenic 45.0%
GATATCCCCATCTGCATTGA+TGG + chr5.2:49806735-49806754 None:intergenic 45.0%
GCACTCTAATGAGTCAACCA+GGG - chr5.2:49806329-49806348 MS.gene96631:intron 45.0%
GCATCAGAAGGAGATGCTAA+AGG - chr5.2:49808191-49808210 MS.gene96631:intron 45.0%
GGAGAGAATACACAACCACA+TGG - chr5.2:49804339-49804358 MS.gene96631:CDS 45.0%
GGATTCCATCAATGCAGATG+GGG - chr5.2:49806727-49806746 MS.gene96631:intron 45.0%
GTACAAGTTCATGAAAGCGG+CGG + chr5.2:49807125-49807144 None:intergenic 45.0%
GTACGAAGGTGAACCTTTCT+TGG - chr5.2:49807023-49807042 MS.gene96631:intron 45.0%
GTGGCTTCACTTGAGTTAGA+TGG - chr5.2:49808413-49808432 MS.gene96631:CDS 45.0%
GTGGTTGTTCTCTTGGGATA+AGG + chr5.2:49804071-49804090 None:intergenic 45.0%
GTTGTATCCGACGTTAGTGT+CGG + chr5.2:49803799-49803818 None:intergenic 45.0%
GTTGTTGCAGGTTTGATCCT+CGG - chr5.2:49805109-49805128 MS.gene96631:CDS 45.0%
TACAATGAGTGTGAAGGGTG+TGG + chr5.2:49808156-49808175 None:intergenic 45.0%
TCCAAGCAACATATCCATCC+TGG + chr5.2:49807246-49807265 None:intergenic 45.0%
TCCTCAAAGGCCACCAAAAT+TGG - chr5.2:49803568-49803587 MS.gene96631:CDS 45.0%
TCGTTCCAGATCACATCAAG+TGG + chr5.2:49806811-49806830 None:intergenic 45.0%
TGGACCAACTCCTTTGAATG+TGG - chr5.2:49804599-49804618 MS.gene96631:CDS 45.0%
TGGAGTTAACCCCAATTCCA+GGG + chr5.2:49806957-49806976 None:intergenic 45.0%
TGGTCGTATCATATCGGTGT+TGG - chr5.2:49803884-49803903 MS.gene96631:CDS 45.0%
TTTGCCCGAACCAACATAAG+TGG + chr5.2:49807493-49807512 None:intergenic 45.0%
TTTGGACGAGGGTAGTTCTT+TGG + chr5.2:49806874-49806893 None:intergenic 45.0%
! ACCAGCTGCTATGCCTTATT+GGG - chr5.2:49804650-49804669 MS.gene96631:CDS 45.0%
! ATGGTTGGTTCCGACATATG+TGG - chr5.2:49807609-49807628 MS.gene96631:CDS 45.0%
! GTTTTTCCTTGTTCGAGCAC+CGG + chr5.2:49807948-49807967 None:intergenic 45.0%
! TTGGGATTGGATGGAAGTGT+TGG - chr5.2:49808386-49808405 MS.gene96631:CDS 45.0%
!! AAGGTTTGTGGTAATGGTGG+TGG + chr5.2:49804090-49804109 None:intergenic 45.0%
!! AATGGTGGTGGTTGTTCTCT+TGG + chr5.2:49804078-49804097 None:intergenic 45.0%
!! ACCAATTTTGGTGGCCTTTG+AGG + chr5.2:49803572-49803591 None:intergenic 45.0%
!! ACTGTGATGGTAGCTTTGAG+AGG - chr5.2:49808521-49808540 MS.gene96631:CDS 45.0%
!! AGGATCGTCCCATCTTGTTT+TGG + chr5.2:49807283-49807302 None:intergenic 45.0%
!! AGTGCTGACGTCGTAACATT+TGG + chr5.2:49807892-49807911 None:intergenic 45.0%
!! ATGGTGGTGGTTGTTCTCTT+GGG + chr5.2:49804077-49804096 None:intergenic 45.0%
!! CATTGGACTGGTGACAATCA+AGG - chr5.2:49807522-49807541 MS.gene96631:CDS 45.0%
!! CCTAAGGTTTGTGGTAATGG+TGG + chr5.2:49804093-49804112 None:intergenic 45.0%
!! CTGTGATGGTAGCTTTGAGA+GGG - chr5.2:49808522-49808541 MS.gene96631:CDS 45.0%
!! GCAAGGTGGATTGATCTCTA+AGG - chr5.2:49808121-49808140 MS.gene96631:intron 45.0%
!! GCTATGCCTTATTGGGCTTT+TGG - chr5.2:49804657-49804676 MS.gene96631:CDS 45.0%
!! GTGAAAGCATTGTTTCCTCC+CGG - chr5.2:49807972-49807991 MS.gene96631:CDS 45.0%
!! GTTATAGTGGGTTGCACTAG+TGG + chr5.2:49807361-49807380 None:intergenic 45.0%
!! ATTAAAAATTCAATATAAAA+TGG + chr5.2:49804920-49804939 None:intergenic 5.0%
!!! TTTATATTTGATTATATTTT+TGG - chr5.2:49804728-49804747 MS.gene96631:CDS 5.0%
AAACTGTACCAACTACCGGG+AGG + chr5.2:49807990-49808009 None:intergenic 50.0%
AAGACCCTTGTGAGTTGCGA+CGG + chr5.2:49807430-49807449 None:intergenic 50.0%
ACCATCAGGGGTCTCTTCAA+TGG + chr5.2:49803614-49803633 None:intergenic 50.0%
AGAGGGTTGAGCATTCCTGT+TGG - chr5.2:49808539-49808558 MS.gene96631:CDS 50.0%
AGTTCCGCCTGTTGATGTGA+TGG + chr5.2:49808030-49808049 None:intergenic 50.0%
ATATCTCCGGTGCTCGAACA+AGG - chr5.2:49807939-49807958 MS.gene96631:CDS 50.0%
CAAATGGAACAGGACCAGGA+TGG - chr5.2:49807229-49807248 MS.gene96631:intron 50.0%
CAATCCGTCGCAACTCACAA+GGG - chr5.2:49807423-49807442 MS.gene96631:CDS 50.0%
CACACCATCACATCAACAGG+CGG - chr5.2:49808023-49808042 MS.gene96631:CDS 50.0%
CATCCTGGTCCTGTTCCATT+TGG + chr5.2:49807231-49807250 None:intergenic 50.0%
CATTGTTTCCTCCCGGTAGT+TGG - chr5.2:49807979-49807998 MS.gene96631:CDS 50.0%
CTCATTGTAACATTCCCGGC+AGG - chr5.2:49808167-49808186 MS.gene96631:intron 50.0%
CTGGAGTTAACCCCAATTCC+AGG + chr5.2:49806958-49806977 None:intergenic 50.0%
GACCAGCTGCTATGCCTTAT+TGG - chr5.2:49804649-49804668 MS.gene96631:CDS 50.0%
GCAACTCACAAGGGTCTTCT+TGG - chr5.2:49807432-49807451 MS.gene96631:CDS 50.0%
GCCCTGATATTCCCCTTCTT+AGG - chr5.2:49803680-49803699 MS.gene96631:CDS 50.0%
GGCACTCTAATGAGTCAACC+AGG - chr5.2:49806328-49806347 MS.gene96631:intron 50.0%
TATTATTAGTGCCAGCGGGG+AGG + chr5.2:49805299-49805318 None:intergenic 50.0%
TCAATCCATAGGCCGTCAAC+AGG + chr5.2:49807147-49807166 None:intergenic 50.0%
TCAGGAAAGTTTACTGCCCC+AGG + chr5.2:49807060-49807079 None:intergenic 50.0%
TCCATTGAAGAGACCCCTGA+TGG - chr5.2:49803610-49803629 MS.gene96631:CDS 50.0%
TGATCATTTGGACCGGCTGT+GGG - chr5.2:49806365-49806384 MS.gene96631:intron 50.0%
TGTCCAAATGGAACAGGACC+AGG - chr5.2:49807225-49807244 MS.gene96631:intron 50.0%
TTGATCATTTGGACCGGCTG+TGG - chr5.2:49806364-49806383 MS.gene96631:intron 50.0%
TTGTACCTGTTGACGGCCTA+TGG - chr5.2:49807139-49807158 MS.gene96631:intron 50.0%
! CATCGTTGGCTAAACCCCTT+TGG + chr5.2:49806993-49807012 None:intergenic 50.0%
! GCGGTCCACTTATGTTGGTT+CGG - chr5.2:49807485-49807504 MS.gene96631:CDS 50.0%
! TGATGCACCGACACTAACGT+CGG - chr5.2:49803789-49803808 MS.gene96631:CDS 50.0%
!! ACCAATAAGGGCACCATCAG+GGG + chr5.2:49803626-49803645 None:intergenic 50.0%
!! AGACCAATAAGGGCACCATC+AGG + chr5.2:49803628-49803647 None:intergenic 50.0%
!! CGGTCCACTTATGTTGGTTC+GGG - chr5.2:49807486-49807505 MS.gene96631:CDS 50.0%
!! GACCAATAAGGGCACCATCA+GGG + chr5.2:49803627-49803646 None:intergenic 50.0%
CGGGCAAATATGCTGCGCAT+TGG - chr5.2:49807505-49807524 MS.gene96631:CDS 55.0%
GCAATCCGTCGCAACTCACA+AGG - chr5.2:49807422-49807441 MS.gene96631:CDS 55.0%
GCCCAATAAGGCATAGCAGC+TGG + chr5.2:49804654-49804673 None:intergenic 55.0%
GGCCACACTTGAGCCAAGAA+AGG + chr5.2:49807039-49807058 None:intergenic 55.0%
TCCTGTTCAATGAGCCGACC+CGG + chr5.2:49806398-49806417 None:intergenic 55.0%
TCTTGGCTCAAGTGTGGCCT+GGG - chr5.2:49807040-49807059 MS.gene96631:intron 55.0%
TTCTTGGCTCAAGTGTGGCC+TGG - chr5.2:49807039-49807058 MS.gene96631:intron 55.0%
! ACCCCTGATGGTGCCCTTAT+TGG - chr5.2:49803622-49803641 MS.gene96631:CDS 55.0%
!! GGATGGAAGTGTTGGAGCAG+TGG - chr5.2:49808394-49808413 MS.gene96631:CDS 55.0%
CCTGTTCAATGAGCCGACCC+GGG + chr5.2:49806397-49806416 None:intergenic 60.0%
CTGTTCAATGAGCCGACCCG+GGG + chr5.2:49806396-49806415 None:intergenic 60.0%
CTTGGCTCAAGTGTGGCCTG+GGG - chr5.2:49807041-49807060 MS.gene96631:intron 60.0%
TATTAGTGCCAGCGGGGAGG+TGG + chr5.2:49805296-49805315 None:intergenic 60.0%
TCTCCTTCTGATGCGCCTGC+CGG + chr5.2:49808185-49808204 None:intergenic 60.0%
TTAAGTGTCCACCTCCCCGC+TGG - chr5.2:49805285-49805304 MS.gene96631:CDS 60.0%
ACCGGCTGTGGGACTAACCC+CGG - chr5.2:49806376-49806395 MS.gene96631:intron 65.0%
CTCCTTCTGATGCGCCTGCC+GGG + chr5.2:49808184-49808203 None:intergenic 65.0%
CTGTGGGACTAACCCCGGGT+CGG - chr5.2:49806381-49806400 MS.gene96631:intron 65.0%
GGTCTGAACTCGGGATGCCG+AGG + chr5.2:49805129-49805148 None:intergenic 65.0%
TTCCCGGCAGGCGCATCAGA+AGG - chr5.2:49808179-49808198 MS.gene96631:intron 65.0%
! CCCGGGTCGGCTCATTGAAC+AGG - chr5.2:49806394-49806413 MS.gene96631:intron 65.0%
CCGGCTGTGGGACTAACCCC+GGG - chr5.2:49806377-49806396 MS.gene96631:intron 70.0%
!! CCCGGGGTTAGTCCCACAGC+CGG + chr5.2:49806380-49806399 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 49803484 49808595 49803484 ID=MS.gene96631
chr5.2 mRNA 49803484 49808595 49803484 ID=MS.gene96631.t1;Parent=MS.gene96631
chr5.2 exon 49808366 49808595 49808366 ID=MS.gene96631.t1.exon1;Parent=MS.gene96631.t1
chr5.2 CDS 49808366 49808595 49808366 ID=cds.MS.gene96631.t1;Parent=MS.gene96631.t1
chr5.2 exon 49807401 49808083 49807401 ID=MS.gene96631.t1.exon2;Parent=MS.gene96631.t1
chr5.2 CDS 49807401 49808083 49807401 ID=cds.MS.gene96631.t1;Parent=MS.gene96631.t1
chr5.2 exon 49803484 49805351 49803484 ID=MS.gene96631.t1.exon3;Parent=MS.gene96631.t1
chr5.2 CDS 49803484 49805351 49803484 ID=cds.MS.gene96631.t1;Parent=MS.gene96631.t1
Gene Sequence

>MS.gene96631

ATGGTTTATCCTCACAGTTTAGCATTTCTATGCTTCTCATCTCTTCTTCTAACCCTTCTTCTATTTTCATCTGAAGCTAGTTCTTCCTCAAAGGCCACCAAAATTGGTCAAGGCTATCGTCTTGTATCCATTGAAGAGACCCCTGATGGTGCCCTTATTGGTCTCCTTCAACTTAACCAGAAAACCAAAATCTATGGCCCTGATATTCCCCTTCTTAGGTTCTATGCTAAGTAAGTACTAAAAAACACATTTAGTTCTTTTTTTGATATGTGTGTGGAGTTTTATGTTATTGTTTTGTTGTTTTATGATGCACCGACACTAACGTCGGATACAACACTGACACGTCCATACTGATAATAATGTGAAAAAAGCAATTACTTTAATGTAATCTAACATGTCATGGTCGTATCATATCGGTGTTGGACACTGAACACGCTTTCGATCAGAAGTGTCAGTACTACATGGATTTTGTTTCTCCAATATTGTTAATTGTACCTATTTGTTTTTTGCAGGCATGAAACAGAGAACCGATTAAGAGTACACATAACAGATGCAAACAAGCAAAGATGGGAAGTACCATACAACCTTATCCCAAGAGAACAACCACCACCATTACCACAAACCTTAGGAAAGTTCCAAAAAAACCCTATTGAAGTCTCAGAGTATTCAGGCTCAGAGCTTCTATTCAGCTACATTTCAAACCCATTTAGTTTCTCAGTCAAAAGAAAATCAAATGGTGAAACCCTTTTCAACTCAACTTCAACTTCTTCAGACCCATTTAGTTCACTTGTTTTCAAAGACCAATATCTTGAGATTTCAACAAAATTACCTAAAGATGCATCTTTATATGGTTTGGGAGAGAATACACAACCACATGGGATTAAATTATATCCAAGTGACCCTTATACTTTATATACAACTGATATTTCAGCTATTAATCTTAATGCTGATTTATATGGATCTCATCCTATGTATATGGATCTGAGAAATAATGGTGGAAAAGCTTCAGCACATGCTGTTTTGTTGTTGAACAGTAATGGAATGGATGTGTTTTATAAAGGAACTTCTTTGACTTATAAGGTTATTGGTGGTGTTTTTGATTTTTACTTCTTCTCTGGACCAACTCCTTTGAATGTGGTTGATCAATATACTACTTTGATTGGAAGACCAGCTGCTATGCCTTATTGGGCTTTTGGTATGATTCTTCACTTTTCACTTTACTCATTTATTTTTTATTTTATTTTTTTATATTTGATTATATTTTTGGTATGCAAGATATTAGTGTTAGTGACTTTGATTTTTGTGACATTGCCCTTTTTGTTAATTGTTAGATTAAAAGAAGGAAAAAAGAAGCACTTTTGCGAAAATTGGGGTTAACCATATGTGAATGCTTAAATGATAAACTTTGGCAGCATTTGTGATAAACTATGGCTCCATTTTATATTGAATTTTTAATTTTGATGCATTGTGATAAACTATTGGCTGCATTGTGACGACTAAGATTGATTAGCAATGTAAAAAATGTTTACAGCTACGATATAGATGAATTAAATAAATCATTGTTCTTTTTCAATAATATATGATAGTACCATCATTACACCTTAACATTGGTCATGTAAGAACAAGTTGTTGCAGGTTTGATCCTCGGCATCCCGAGTTCAGACCAAGTAATATATGATAGTAAATTTTAGTGTAACCACTTTTTTTATTTTAAATTTGTCCTCTAATTTAATACAAATAAATTTACCACTATACTTTCAACTACATCCAAAAATAATTAATCAGTTGGTAGATGTGTCTATTAAGTGTCCACCTCCCCGCTGGCACTAATAATAAAAACAAAAATATCAATCATGGCATCTTGCTAAGTTTGTTCTGTATTTTTTAGGATTCATGTAAGGAACCGTGATATCATTTTTAACATTTTGTGCTACATATTTTAAAATATTAAACATACCAAAAATATGAAGATATTTTTCAAAACCAAAGAGACAAAGCCTTTTCAGATCTATGATTGTGTAATACAGTGGCTTTCTTGATTTTTTTTATCATGAGAGAATTTTCATGGTATGCAAAATACATTTGAGAATCCAATGACTCATAGTTATTTTTTGGGACCTGTATATTAATGTATGATGGGGGTGCTTTGATTCTTTTATAAAGTTTGGTTTTTCAATGTTTTTTCGATTCTGTCACTGTTTGTTTGATTTGGATATTACCAAAATCTTTTCTGGTCCAGCTTTTGTTGTTGAGTGTTAGGTAATTGAATACTTTTTTGGTCCACATGGAATGATATCATTTCACACACAAAATATGGAAACTTAACTTTACAATATGAAAATAATTCAACCTTTTTGGTAAAGTTTTGGGTCAAGAATTCCAACTTTTTGAAATACAAAACTATAAAGCAATACATGTGGCTGGTTGTCAAAGTTATTAATATTACCTACACGTTTTTCATTATTACTCTTTCTATTTTGCTACCTAAGGAGTGAGGTTATATTTAAGTTTGTTACAAATTGTGTTGTTTTAAAGCACCAACCATGTGGAAGATTTTTAATGTCTTTTAAAGATAAGCTTCCTTTGTTGGTGACATTAACTGATCAATCAATCACTAAGATGTGGTCCATTGTGTTTAAGTGTAAAATTCAATTATCAATTTTCTTTCATGTATTTACATTGTTAAATTTTGAAAAATTTATAATTGAAAATACTGATGAAAAAAGTATATATAATTAAAAAATAACAAATAAAATAAGAATAAAGCCTTGTACAAAAAGTGCTTATTTTTCAAATAAATTTTTACTTCATTTTATTTATTTTGGAATCCACCGTAATGTATTTGGCACTCTAATGAGTCAACCAGGGTATCCCACAACATTGATCATTTGGACCGGCTGTGGGACTAACCCCGGGTCGGCTCATTGAACAGGATTTGCCTAATTTAATGGGGAGAAAGATGGCATACAAACAAGTAAACATGAGGTTACAAAGTTAGATTCATTGTGCAAAAATGATGAAAGATTTTGACTACACTCTTGGAGTTTTCTCTTGAAATCTAAATCTTTTCACAGTACTTGGGTAGCCTTAGATTTTCTGTAACTTTATCTACATGTTAATGTTGCTACTTCACTTGTAAATTATATGAAAAATGTTGATAGCCTTAGATTCTTATGCATCATGCTTTAATTGCAAAAGGGTACATGAAGTTTTTACTGATATTCTCACTATTGGTATATTACAGGATTCCATCAATGCAGATGGGGATATCACAATCTATCAGTTGTGGAAGATGTTGTGGATAGTTACAAGAAGGCTCAAATCCCACTTGATGTGATCTGGAACGACGATGATCATATGGACGGACACAAAGACTTCACCTTGAATCCAAAGAACTACCCTCGTCCAAAGCTTCTAAACTTCTTGAACAAGATACACAGCATTGGCATGAAATACATTGTCATTATTGACCCTGGAATTGGGGTTAACTCCAGTTATGGTGTATACCAAAGGGGTTTAGCCAACGATGTTTTCATCAAGTACGAAGGTGAACCTTTCTTGGCTCAAGTGTGGCCTGGGGCAGTAAACTTTCCTGATTTTCTCAATCCAAAGACGGTAAATTGGTGGGTTGACGAGATCCGCCGCTTTCATGAACTTGTACCTGTTGACGGCCTATGGATTGACATGAATGAAGCTTCAAATTTCTGTTCTGGTAAATGCAAAATTCCAAAGAACACGATATGTCCAAATGGAACAGGACCAGGATGGATATGTTGCTTGGATTGCAAGAACATCGCCAAAACAAGATGGGACGATCCTCCTTACAAGATAAACGCTTCTGGAATACAAGCTCCAATCGGATACAAAACAATAGCCACTAGTGCAACCCACTATAACGGTGTCTTGGAGTATGATGCTCATAGTATCTATGGTTTCTCGCAATCCGTCGCAACTCACAAGGGTCTTCTTGGACTTGAAGGCAAAAGGCCTTTTATTTTGTCGCGGTCCACTTATGTTGGTTCGGGCAAATATGCTGCGCATTGGACTGGTGACAATCAAGGAACATGGGAGAATTTAAGGTATTCAATATCCACAATGTTGAATTTCGGTATATTTGGTGTTCCAATGGTTGGTTCCGACATATGTGGATTTTACCCACAACCAACTGAAGAACTTTGCAATAGATGGATTGAAGTTGGTGCTTTCTACCCATTTTCAAGAGATCATGCAAACTACTACTCCCCAAGACAAGAGCTTTACCAATGGGATTCAGTTGCTCAATCAGCAAGAAATGCTTTAGGTATAAGGTACAAGATTCTACCATATCTTTACACCTTAAACTACGAAGCGCATGTTAGTGGATCGCCAATTGCAAGACCACTTTTCTTCACTTTCCCATCTTACACCAAATGTTACGACGTCAGCACTCAATTTTTACTCGGAAGCAGTCTCATGATATCTCCGGTGCTCGAACAAGGAAAAACACAAGTGAAAGCATTGTTTCCTCCCGGTAGTTGGTACAGTTTACTCGATTGGACTCACACCATCACATCAACAGGCGGAACTTATGTTACACTTGATGCACCTCTTCATGTGGTCAATGTTCATTTATATCAGAACACAATTCTACCAATGCAGCAAGGTGGATTGATCTCTAAGGATGCTCGAACCACACCCTTCACACTCATTGTAACATTCCCGGCAGGCGCATCAGAAGGAGATGCTAAAGGGACACTTTTCATTGACGACGATGAACTTCCAGAAATGAAGCTTGGAAACGGCTATTCGAGTTTTATCGATCTATATGCTAGTGTCAAACAAGGAGGTGTGAAAGTTTGGTCAGAAGTTCAAGAGGGTAAATTTGCTTTAGACAAAGGTTTGATTATTGATTCAATTTCTGTGTTGGGATTGGATGGAAGTGTTGGAGCAGTGGCTTCACTTGAGTTAGATGGAAAACCACTAATTGGCTTGTCAGGTGTGAATGTTACTACTTCTGAACATGTGCATTTGGAAGGTGAAGGAAATGGTGAAAGTAAGACTGTGATGGTAGCTTTGAGAGGGTTGAGCATTCCTGTTGGTAAAAACTTTGCAATGACATGGAAAATGGGATGA
Protein sequence

>MS.gene96631.t1

MVYPHSLAFLCFSSLLLTLLLFSSEASSSSKATKIGQGYRLVSIEETPDGALIGLLQLNQKTKIYGPDIPLLRFYAKHETENRLRVHITDANKQRWEVPYNLIPREQPPPLPQTLGKFQKNPIEVSEYSGSELLFSYISNPFSFSVKRKSNGETLFNSTSTSSDPFSSLVFKDQYLEISTKLPKDASLYGLGENTQPHGIKLYPSDPYTLYTTDISAINLNADLYGSHPMYMDLRNNGGKASAHAVLLLNSNGMDVFYKGTSLTYKVIGGVFDFYFFSGPTPLNVVDQYTTLIGRPAAMPYWAFGFHQCRWGYHNLSVVEDVVDSYKKAQIPLDVIWNDDDHMDGHKDFTLNPKNYPRPKLLNFLNKIHSIGMKYIVIIDPGIGVNSSYGVYQRGLANDVFIKYEGEPFLAQVWPGAVNFPDFLNPKTVNWWVDEIRRFHELVPVDGLWIDMNEASNFCSGKCKIPKNTICPNGTGPGWICCLDCKNIAKTRWDDPPYKINASGIQAPIGYKTIATSATHYNGVLEYDAHSIYGFSQSVATHKGLLGLEGKRPFILSRSTYVGSGKYAAHWTGDNQGTWENLRYSISTMLNFGIFGVPMVGSDICGFYPQPTEELCNRWIEVGAFYPFSRDHANYYSPRQELYQWDSVAQSARNALGIRYKILPYLYTLNYEAHVSGSPIARPLFFTFPSYTKCYDVSTQFLLGSSLMISPVLEQGKTQVKALFPPGSWYSLLDWTHTITSTGGTYVTLDAPLHVVNVHLYQNTILPMQQGGLISKDARTTPFTLIVTFPAGASEGDAKGTLFIDDDELPEMKLGNGYSSFIDLYASVKQGGVKVWSEVQEGKFALDKGLIIDSISVLGLDGSVGAVASLELDGKPLIGLSGVNVTTSEHVHLEGEGNGESKTVMVALRGLSIPVGKNFAMTWKMG