AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96786

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96786.t1 MTR_4g081950 99.597 248 1 0 1 248 37 284 0.0 506
MS.gene96786.t1 MTR_5g041700 86.235 247 34 0 1 247 1 247 1.73e-163 452
MS.gene96786.t1 MTR_3g094040 80.165 242 48 0 6 247 12 253 7.15e-146 408
MS.gene96786.t1 MTR_3g094060 80.165 242 48 0 6 247 12 253 1.35e-145 407
MS.gene96786.t1 MTR_3g435430 82.051 234 42 0 14 247 14 247 2.19e-144 404
MS.gene96786.t1 MTR_5g075320 76.829 246 56 1 3 247 6 251 2.57e-139 391
MS.gene96786.t1 MTR_3g466790 77.328 247 56 0 1 247 8 254 1.63e-136 384
MS.gene96786.t1 MTR_3g466760 76.613 248 56 2 1 247 14 260 1.24e-134 380
MS.gene96786.t1 MTR_7g011060 74.297 249 53 3 1 247 1 240 1.95e-132 374
MS.gene96786.t1 MTR_5g079950 70.732 246 69 2 1 244 10 254 9.34e-128 362
MS.gene96786.t1 MTR_6g012520 75.299 251 51 3 1 248 1 243 6.00e-123 349
MS.gene96786.t1 MTR_2g097030 66.667 255 74 2 1 244 1 255 7.40e-123 350
MS.gene96786.t1 MTR_7g061720 67.984 253 72 3 1 244 1 253 7.45e-123 350
MS.gene96786.t1 MTR_1g026020 64.315 241 82 3 6 243 11 250 1.12e-114 329
MS.gene96786.t1 MTR_4g063975 66.000 250 78 3 1 244 5 253 5.46e-114 327
MS.gene96786.t1 MTR_1g085460 64.502 231 78 3 16 242 21 251 4.22e-107 310
MS.gene96786.t1 MTR_7g111010 60.816 245 91 4 3 242 4 248 7.77e-104 301
MS.gene96786.t1 MTR_7g110990 65.315 222 73 3 25 242 12 233 3.64e-103 299
MS.gene96786.t1 MTR_4g124340 57.778 225 90 3 23 244 59 281 6.58e-97 285
MS.gene96786.t1 MTR_7g013120 59.556 225 86 3 25 246 29 251 9.44e-95 278
MS.gene96786.t1 MTR_7g013150 59.091 220 86 2 25 242 30 247 6.67e-94 276
MS.gene96786.t1 MTR_7g013140 58.108 222 89 2 25 244 28 247 2.17e-91 270
MS.gene96786.t1 MTR_8g058990 57.399 223 91 2 25 245 30 250 3.02e-91 270
MS.gene96786.t1 MTR_5g076950 56.250 224 97 1 25 247 41 264 3.38e-90 267
MS.gene96786.t1 MTR_8g464350 56.364 220 92 2 25 242 31 248 5.00e-88 261
MS.gene96786.t1 MTR_5g011210 55.405 222 95 3 25 243 37 257 1.32e-86 258
MS.gene96786.t1 MTR_0040s0140 50.000 250 118 3 1 247 11 256 2.26e-86 257
MS.gene96786.t1 MTR_2g090255 50.000 246 119 2 3 246 8 251 1.93e-84 252
MS.gene96786.t1 MTR_4g102450 55.605 223 93 4 25 243 36 256 2.74e-84 252
MS.gene96786.t1 MTR_3g064510 52.814 231 100 5 25 246 53 283 2.80e-78 238
MS.gene96786.t1 MTR_0008s0120 43.439 221 69 3 25 245 32 196 2.77e-52 168
MS.gene96786.t1 MTR_6g012500 77.228 101 23 0 148 248 181 281 1.41e-51 169
MS.gene96786.t1 MTR_2g090270 30.769 234 132 9 25 243 35 253 1.10e-26 104
MS.gene96786.t1 MTR_2g090265 31.197 234 131 10 25 243 33 251 1.35e-25 101
MS.gene96786.t1 MTR_0118s0070 32.314 229 127 10 30 242 53 269 2.18e-24 98.6
MS.gene96786.t1 MTR_0122s0020 31.602 231 134 9 25 243 41 259 4.90e-24 97.4
MS.gene96786.t1 MTR_4g028640 29.218 243 139 11 16 242 33 258 1.60e-20 88.2
MS.gene96786.t1 MTR_0809s0010 29.536 237 129 12 25 242 47 264 3.46e-20 87.0
MS.gene96786.t1 MTR_4g099370 27.347 245 161 9 6 242 9 244 5.27e-18 80.9
MS.gene96786.t1 MTR_5g013440 26.446 242 163 8 8 242 12 245 1.55e-16 77.0
MS.gene96786.t1 MTR_1g085365 60.784 51 20 0 192 242 4 54 2.00e-15 68.9
MS.gene96786.t1 MTR_4g075790 28.700 223 126 8 36 242 32 237 2.56e-15 73.6
MS.gene96786.t1 MTR_4g098930 29.461 241 135 12 25 247 29 252 3.37e-15 73.2
MS.gene96786.t1 MTR_0122s0020 31.792 173 95 8 25 186 41 201 5.86e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96786.t1 AT1G69530 81.928 249 43 2 1 247 1 249 1.53e-150 419
MS.gene96786.t1 AT1G69530 81.928 249 43 2 1 247 1 249 1.53e-150 419
MS.gene96786.t1 AT2G03090 78.947 247 52 0 1 247 6 252 1.78e-149 417
MS.gene96786.t1 AT1G69530 82.041 245 42 2 1 243 1 245 1.88e-148 415
MS.gene96786.t1 AT1G26770 83.471 242 40 0 6 247 7 248 3.57e-141 396
MS.gene96786.t1 AT1G26770 83.471 242 40 0 6 247 17 258 4.83e-141 396
MS.gene96786.t1 AT5G56320 72.908 251 64 1 1 247 1 251 6.65e-136 383
MS.gene96786.t1 AT5G56320 72.908 251 64 1 1 247 1 251 6.65e-136 383
MS.gene96786.t1 AT5G56320 72.908 251 64 1 1 247 1 251 2.64e-135 383
MS.gene96786.t1 AT2G40610 74.074 243 62 1 6 247 11 253 3.91e-135 381
MS.gene96786.t1 AT2G39700 69.444 252 69 2 1 244 1 252 3.01e-127 361
MS.gene96786.t1 AT5G05290 69.231 247 73 2 4 247 9 255 2.03e-125 356
MS.gene96786.t1 AT1G69530 71.486 249 39 3 1 247 1 219 5.92e-125 353
MS.gene96786.t1 AT5G02260 68.145 248 75 2 1 244 6 253 8.96e-125 355
MS.gene96786.t1 AT1G69530 72.917 240 53 4 1 238 1 230 1.04e-124 354
MS.gene96786.t1 AT3G55500 73.333 225 58 1 22 244 31 255 3.20e-124 353
MS.gene96786.t1 AT2G37640 70.124 241 69 2 6 244 18 257 5.26e-124 353
MS.gene96786.t1 AT3G29030 74.107 224 49 2 25 247 38 253 1.02e-119 342
MS.gene96786.t1 AT2G28950 67.063 252 75 2 1 244 1 252 1.05e-117 337
MS.gene96786.t1 AT1G20190 71.300 223 61 2 24 243 25 247 1.96e-114 328
MS.gene96786.t1 AT2G37640 71.707 205 56 1 42 244 28 232 9.26e-110 316
MS.gene96786.t1 AT4G01630 62.241 241 87 3 6 242 9 249 7.28e-107 309
MS.gene96786.t1 AT5G39280 56.067 239 100 2 9 244 35 271 4.34e-98 288
MS.gene96786.t1 AT5G39300 58.636 220 89 1 25 244 55 272 2.66e-97 286
MS.gene96786.t1 AT5G39270 58.182 220 90 1 25 244 58 275 1.90e-93 276
MS.gene96786.t1 AT5G39290 57.273 220 92 1 25 244 58 275 9.79e-93 274
MS.gene96786.t1 AT1G20190 68.449 187 56 2 60 243 2 188 2.88e-91 267
MS.gene96786.t1 AT5G39310 56.757 222 93 2 24 244 89 308 4.37e-89 266
MS.gene96786.t1 AT1G12560 53.527 241 109 3 4 242 16 255 1.60e-86 258
MS.gene96786.t1 AT1G62980 52.893 242 108 5 6 242 10 250 1.19e-85 255
MS.gene96786.t1 AT3G03220 52.679 224 105 1 25 247 40 263 3.84e-84 252
MS.gene96786.t1 AT3G15370 52.675 243 105 6 6 243 8 245 3.89e-82 246
MS.gene96786.t1 AT5G39260 53.846 221 94 2 25 244 45 258 6.07e-79 239
MS.gene96786.t1 AT4G38210 50.661 227 108 2 25 247 28 254 2.74e-78 237
MS.gene96786.t1 AT3G15370 46.886 273 105 7 6 243 8 275 1.47e-75 231
MS.gene96786.t1 AT4G28250 33.190 232 130 9 25 243 36 255 8.27e-28 107
MS.gene96786.t1 AT2G20750 33.047 233 132 9 25 243 40 262 4.81e-26 102
MS.gene96786.t1 AT4G28250 32.468 231 127 9 25 243 36 249 1.98e-24 98.2
MS.gene96786.t1 AT1G65680 30.901 233 134 10 25 242 47 267 7.89e-23 94.4
MS.gene96786.t1 AT1G65681 29.954 217 127 9 39 242 12 216 3.23e-19 83.6
MS.gene96786.t1 AT2G45110 28.750 240 132 9 24 242 32 253 5.11e-19 84.0
MS.gene96786.t1 AT4G17030 26.820 261 162 9 2 248 4 249 6.73e-18 80.5
MS.gene96786.t1 AT4G28250 33.143 175 90 7 25 189 36 193 8.47e-17 77.0
MS.gene96786.t1 AT2G20750 31.214 173 99 6 25 186 40 203 1.95e-16 76.3
MS.gene96786.t1 AT3G60570 25.000 232 146 8 25 242 34 251 2.03e-16 76.6
MS.gene96786.t1 AT4G28250 33.140 172 88 7 25 186 36 190 4.29e-16 74.7
MS.gene96786.t1 AT3G45970 26.147 218 138 10 43 247 14 221 6.00e-14 69.7
MS.gene96786.t1 AT3G45960 29.577 213 126 10 48 247 46 247 1.45e-13 68.9
MS.gene96786.t1 AT4G38400 27.830 212 131 10 48 247 47 248 2.11e-12 65.5
MS.gene96786.t1 AT3G60570 23.832 214 135 8 43 242 4 203 2.88e-12 64.7
MS.gene96786.t1 AT3G45970 25.352 213 136 10 48 247 46 248 2.26e-11 62.8

Find 71 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGCTCATGCCACCTTCTA+TGG 0.249088 4.3:+28342213 MS.gene96786:CDS
GCTCCAGCTGGATGGTCTTT+TGG 0.250334 4.3:+28343070 MS.gene96786:CDS
CACCAACCACCTTGGTTGTT+TGG 0.270138 4.3:-28342598 None:intergenic
TCCAGCTGGAGCAACATTAT+TGG 0.273928 4.3:-28343059 None:intergenic
GACCATAGATGGTGCCTTCC+TGG 0.298042 4.3:+28342526 MS.gene96786:CDS
GGCTTTCATTGGCTTGGTTT+TGG 0.300511 4.3:+28342137 MS.gene96786:CDS
GTAGGTGGGGCTTGTGGATA+TGG 0.300951 4.3:+28342397 MS.gene96786:intron
GGATATCTATGTCAAGAAAC+TGG 0.302501 4.3:+28342951 MS.gene96786:CDS
GTGGCTCTTGCTATGAAATT+AGG 0.339101 4.3:+28342494 MS.gene96786:CDS
CAAGAAACTGGGGACAAAAT+TGG 0.340071 4.3:+28342963 MS.gene96786:CDS
TTCTCCTCTGTTTATGCCTA+TGG 0.375296 4.3:+28342177 MS.gene96786:CDS
TCCAATAATGTTGCTCCAGC+TGG 0.392823 4.3:+28343058 MS.gene96786:CDS
AAACAGGAAATGGCTTTCAT+TGG 0.394019 4.3:+28342126 None:intergenic
AACCAGGAAGGCACCATCTA+TGG 0.400538 4.3:-28342528 None:intergenic
GCAGGAGAAAGGGAGGTATA+AGG 0.412967 4.3:+28342825 MS.gene96786:CDS
ATCACCAACGTTGGTGGTGC+TGG 0.415234 4.3:+28342887 MS.gene96786:CDS
AGCATCACTTCCACCATAGA+AGG 0.415765 4.3:-28342226 None:intergenic
TTGTTTGGTAAGGCATTGTT+TGG 0.417898 4.3:-28342583 None:intergenic
TATGGTGGAAGTGATGCTTC+AGG 0.438776 4.3:+28342231 MS.gene96786:CDS
GGAAATGGCTTTCATTGGCT+TGG 0.445049 4.3:+28342131 None:intergenic
GGTATAAGGTTCACTATCAA+TGG 0.450863 4.3:+28342839 MS.gene96786:CDS
ACCACCTTGGTTGTTTGGTA+AGG 0.471656 4.3:-28342593 None:intergenic
TTCCATACCCTTGACTGTAA+AGG 0.477366 4.3:-28342423 None:intergenic
TAGGGTGTCATGCAGGAGAA+AGG 0.494659 4.3:+28342814 MS.gene96786:intron
CAGAGCAACAATTATCTCAA+TGG 0.508519 4.3:+28342986 MS.gene96786:CDS
TCTGTTTATGCCTATGGTGG+AGG 0.513461 4.3:+28342183 MS.gene96786:CDS
CGTATTGCTCAATACAAAGC+TGG 0.513556 4.3:+28342667 MS.gene96786:CDS
AGTGATGCTTCAGGAACAAT+GGG 0.514794 4.3:+28342240 MS.gene96786:CDS
TTTGGTAAGGCATTGTTTGG+AGG 0.514834 4.3:-28342580 None:intergenic
TCCTCTGTTTATGCCTATGG+TGG 0.517540 4.3:+28342180 MS.gene96786:CDS
GTTCTTATCACCAACGTTGG+TGG 0.523355 4.3:+28342881 MS.gene96786:CDS
GTTGAGCAAGATCAAAATGT+TGG 0.527634 4.3:-28342633 None:intergenic
TTTAAGGTTACAACTAGTGA+TGG 0.529102 4.3:+28343022 MS.gene96786:CDS
AACCTTTACAGTCAAGGGTA+TGG 0.530538 4.3:+28342421 MS.gene96786:CDS
ACCTACCTTCTAAAATCTAC+AGG 0.533353 4.3:-28342697 None:intergenic
CAACGTTGGTGATAAGAACT+AGG 0.542775 4.3:-28342877 None:intergenic
TACATGCTGCATCCATCAAA+GGG 0.543754 4.3:+28342915 MS.gene96786:CDS
TTCAACAATGGCTTAAGCTG+TGG 0.546607 4.3:+28342475 MS.gene96786:CDS
GATCAAAATGTTGGAGAGGA+GGG 0.550651 4.3:-28342624 None:intergenic
GTTTGGAGGACAGAAATTTG+TGG 0.554497 4.3:-28342566 None:intergenic
AGGGTGTCATGCAGGAGAAA+GGG 0.560420 4.3:+28342815 MS.gene96786:intron
ATGGTAACCTTTACAGTCAA+GGG 0.564595 4.3:+28342416 MS.gene96786:CDS
GTACATGCTGCATCCATCAA+AGG 0.567778 4.3:+28342914 MS.gene96786:CDS
TGACCAAAAGACCATCCAGC+TGG 0.568697 4.3:-28343073 None:intergenic
GATATCTATGTCAAGAAACT+GGG 0.570919 4.3:+28342952 MS.gene96786:CDS
TATGGTAACCTTTACAGTCA+AGG 0.571142 4.3:+28342415 MS.gene96786:CDS
AAGTGATGCTTCAGGAACAA+TGG 0.572498 4.3:+28342239 MS.gene96786:CDS
TTTATGCCTATGGTGGAGGA+TGG 0.581237 4.3:+28342187 MS.gene96786:CDS
AGATCAAAATGTTGGAGAGG+AGG 0.586254 4.3:-28342625 None:intergenic
ATAATGTTGCTCCAGCTGGA+TGG 0.590574 4.3:+28343062 MS.gene96786:CDS
GTTAGTCCATCCTCCACCAT+AGG 0.590601 4.3:-28342193 None:intergenic
GGCATAAACAGAGGAGAACA+TGG 0.590826 4.3:-28342172 None:intergenic
GTGCCTTCCTGGTTCCATTG+TGG 0.591922 4.3:+28342537 MS.gene96786:CDS
GAGGGTTACACCAACCACCT+TGG 0.598920 4.3:-28342606 None:intergenic
GCAGTGACCACAATGGAACC+AGG 0.602351 4.3:-28342544 None:intergenic
ATTTGTGTAGGGTGTCATGC+AGG 0.609417 4.3:+28342807 MS.gene96786:intron
TACCAAACAACCAAGGTGGT+TGG 0.612778 4.3:+28342596 MS.gene96786:CDS
GCTCATGCCACCTTCTATGG+TGG 0.622518 4.3:+28342216 MS.gene96786:CDS
GAGGATTTGAGCACCAGTGT+AGG 0.625146 4.3:-28343098 None:intergenic
GGTGTGCTAATGACCATAGA+TGG 0.625411 4.3:+28342515 MS.gene96786:CDS
GCAAGATCAAAATGTTGGAG+AGG 0.641783 4.3:-28342628 None:intergenic
ATCACTTCCACCATAGAAGG+TGG 0.649313 4.3:-28342223 None:intergenic
CTAGTTCTTATCACCAACGT+TGG 0.662164 4.3:+28342878 MS.gene96786:CDS
GTGTCATGCAGGAGAAAGGG+AGG 0.675427 4.3:+28342818 MS.gene96786:CDS
TGACCACAATGGAACCAGGA+AGG 0.676921 4.3:-28342540 None:intergenic
ATCTCCAGCACCACCAACGT+TGG 0.688696 4.3:-28342891 None:intergenic
ATTTGTGGCAGTGACCACAA+TGG 0.706109 4.3:-28342551 None:intergenic
ATATCTATGTCAAGAAACTG+GGG 0.706710 4.3:+28342953 MS.gene96786:CDS
GCCTTACCAAACAACCAAGG+TGG 0.728065 4.3:+28342592 MS.gene96786:CDS
TCCACCATAGGCATAAACAG+AGG 0.739179 4.3:-28342181 None:intergenic
AATGCCTTACCAAACAACCA+AGG 0.745266 4.3:+28342589 MS.gene96786:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCAATTTTTATGTATT+TGG + chr4.3:28342753-28342772 MS.gene96786:intron 10.0%
!!! AAAATCAAAACTTTATTTCA+AGG - chr4.3:28342294-28342313 None:intergenic 15.0%
!!! ACTAATTTGTGTTTTTATTG+TGG + chr4.3:28342781-28342800 MS.gene96786:intron 20.0%
! AAACAACAAAATCAGTGAAA+TGG - chr4.3:28342372-28342391 None:intergenic 25.0%
! AACAACAAAATCAGTGAAAT+GGG - chr4.3:28342371-28342390 None:intergenic 25.0%
!! GAGTGGTTTTTATTGAAAAA+TGG - chr4.3:28342272-28342291 None:intergenic 25.0%
!!! GATTTTGTTGTTTTTTGTGT+AGG + chr4.3:28342379-28342398 MS.gene96786:intron 25.0%
ATATCTATGTCAAGAAACTG+GGG + chr4.3:28342953-28342972 MS.gene96786:CDS 30.0%
GATATCTATGTCAAGAAACT+GGG + chr4.3:28342952-28342971 MS.gene96786:CDS 30.0%
TATTGTGGTGAATTTGTGTA+GGG + chr4.3:28342796-28342815 MS.gene96786:intron 30.0%
TTATTGTGGTGAATTTGTGT+AGG + chr4.3:28342795-28342814 MS.gene96786:intron 30.0%
! CAAAACTTTATTTCAAGGAG+TGG - chr4.3:28342289-28342308 None:intergenic 30.0%
! TGGTCAAAGTTTGTCTTTTA+AGG + chr4.3:28343006-28343025 MS.gene96786:CDS 30.0%
! TTGTTCCTGTAGATTTTAGA+AGG + chr4.3:28342692-28342711 MS.gene96786:CDS 30.0%
! TTTAAGGTTACAACTAGTGA+TGG + chr4.3:28343022-28343041 MS.gene96786:CDS 30.0%
!!! TTGTTGTTTTTTGTGTAGGT+GGG + chr4.3:28342383-28342402 MS.gene96786:intron 30.0%
!!! TTTGTTGTTTTTTGTGTAGG+TGG + chr4.3:28342382-28342401 MS.gene96786:intron 30.0%
ATGGTAACCTTTACAGTCAA+GGG + chr4.3:28342416-28342435 MS.gene96786:CDS 35.0%
CAGAGCAACAATTATCTCAA+TGG + chr4.3:28342986-28343005 MS.gene96786:CDS 35.0%
GGATATCTATGTCAAGAAAC+TGG + chr4.3:28342951-28342970 MS.gene96786:CDS 35.0%
GGTATAAGGTTCACTATCAA+TGG + chr4.3:28342839-28342858 MS.gene96786:CDS 35.0%
GTTGAGCAAGATCAAAATGT+TGG - chr4.3:28342636-28342655 None:intergenic 35.0%
TATGGTAACCTTTACAGTCA+AGG + chr4.3:28342415-28342434 MS.gene96786:CDS 35.0%
TGAGCAATACGAAGAAAAAC+AGG - chr4.3:28342658-28342677 None:intergenic 35.0%
! AGTACAGCACTTTTCAACAA+TGG + chr4.3:28342463-28342482 MS.gene96786:CDS 35.0%
!! ACCTACCTTCTAAAATCTAC+AGG - chr4.3:28342700-28342719 None:intergenic 35.0%
!! TCCTGTAGATTTTAGAAGGT+AGG + chr4.3:28342696-28342715 MS.gene96786:intron 35.0%
!! TTGTTTGGTAAGGCATTGTT+TGG - chr4.3:28342586-28342605 None:intergenic 35.0%
!!! TGTTGTTTTTTGTGTAGGTG+GGG + chr4.3:28342384-28342403 MS.gene96786:intron 35.0%
AACCTTTACAGTCAAGGGTA+TGG + chr4.3:28342421-28342440 MS.gene96786:CDS 40.0%
AAGTGATGCTTCAGGAACAA+TGG + chr4.3:28342239-28342258 MS.gene96786:CDS 40.0%
AATGCCTTACCAAACAACCA+AGG + chr4.3:28342589-28342608 MS.gene96786:CDS 40.0%
AGATCAAAATGTTGGAGAGG+AGG - chr4.3:28342628-28342647 None:intergenic 40.0%
AGTGATGCTTCAGGAACAAT+GGG + chr4.3:28342240-28342259 MS.gene96786:CDS 40.0%
CAAGAAACTGGGGACAAAAT+TGG + chr4.3:28342963-28342982 MS.gene96786:CDS 40.0%
CGTATTGCTCAATACAAAGC+TGG + chr4.3:28342667-28342686 MS.gene96786:CDS 40.0%
GATCAAAATGTTGGAGAGGA+GGG - chr4.3:28342627-28342646 None:intergenic 40.0%
GCAAGATCAAAATGTTGGAG+AGG - chr4.3:28342631-28342650 None:intergenic 40.0%
GTTTGGAGGACAGAAATTTG+TGG - chr4.3:28342569-28342588 None:intergenic 40.0%
TACATGCTGCATCCATCAAA+GGG + chr4.3:28342915-28342934 MS.gene96786:CDS 40.0%
TCAAAGGGTCAAAAACTGGT+TGG + chr4.3:28342930-28342949 MS.gene96786:CDS 40.0%
TCCATCAAAGGGTCAAAAAC+TGG + chr4.3:28342926-28342945 MS.gene96786:CDS 40.0%
TTCAACAATGGCTTAAGCTG+TGG + chr4.3:28342475-28342494 MS.gene96786:CDS 40.0%
TTCCATACCCTTGACTGTAA+AGG - chr4.3:28342426-28342445 None:intergenic 40.0%
TTCTCCTCTGTTTATGCCTA+TGG + chr4.3:28342177-28342196 MS.gene96786:CDS 40.0%
! ACCAGTTTTTGACCCTTTGA+TGG - chr4.3:28342930-28342949 None:intergenic 40.0%
! CTAGTTCTTATCACCAACGT+TGG + chr4.3:28342878-28342897 MS.gene96786:CDS 40.0%
! GTGGCTCTTGCTATGAAATT+AGG + chr4.3:28342494-28342513 MS.gene96786:CDS 40.0%
! TCTTTTGGTCAAACCTACAC+TGG + chr4.3:28343085-28343104 MS.gene96786:CDS 40.0%
!! CAACGTTGGTGATAAGAACT+AGG - chr4.3:28342880-28342899 None:intergenic 40.0%
!! TTTGGTAAGGCATTGTTTGG+AGG - chr4.3:28342583-28342602 None:intergenic 40.0%
ACCACCTTGGTTGTTTGGTA+AGG - chr4.3:28342596-28342615 None:intergenic 45.0%
AGCATCACTTCCACCATAGA+AGG - chr4.3:28342229-28342248 None:intergenic 45.0%
ATAATGTTGCTCCAGCTGGA+TGG + chr4.3:28343062-28343081 MS.gene96786:CDS 45.0%
ATCACTTCCACCATAGAAGG+TGG - chr4.3:28342226-28342245 None:intergenic 45.0%
ATTTGTGGCAGTGACCACAA+TGG - chr4.3:28342554-28342573 None:intergenic 45.0%
GGCATAAACAGAGGAGAACA+TGG - chr4.3:28342175-28342194 None:intergenic 45.0%
GGTGTGCTAATGACCATAGA+TGG + chr4.3:28342515-28342534 MS.gene96786:CDS 45.0%
GTACATGCTGCATCCATCAA+AGG + chr4.3:28342914-28342933 MS.gene96786:CDS 45.0%
GTTCTTATCACCAACGTTGG+TGG + chr4.3:28342881-28342900 MS.gene96786:CDS 45.0%
TACCAAACAACCAAGGTGGT+TGG + chr4.3:28342596-28342615 MS.gene96786:CDS 45.0%
TCCAATAATGTTGCTCCAGC+TGG + chr4.3:28343058-28343077 MS.gene96786:CDS 45.0%
TCCACCATAGGCATAAACAG+AGG - chr4.3:28342184-28342203 None:intergenic 45.0%
TCCAGCTGGAGCAACATTAT+TGG - chr4.3:28343062-28343081 None:intergenic 45.0%
TCCTCTGTTTATGCCTATGG+TGG + chr4.3:28342180-28342199 MS.gene96786:CDS 45.0%
TCTGTTTATGCCTATGGTGG+AGG + chr4.3:28342183-28342202 MS.gene96786:CDS 45.0%
! ATTTGTGTAGGGTGTCATGC+AGG + chr4.3:28342807-28342826 MS.gene96786:intron 45.0%
! TATGGTGGAAGTGATGCTTC+AGG + chr4.3:28342231-28342250 MS.gene96786:CDS 45.0%
! TTTATGCCTATGGTGGAGGA+TGG + chr4.3:28342187-28342206 MS.gene96786:CDS 45.0%
!!! GGCTTTCATTGGCTTGGTTT+TGG + chr4.3:28342137-28342156 MS.gene96786:CDS 45.0%
AACGCTCATGCCACCTTCTA+TGG + chr4.3:28342213-28342232 MS.gene96786:CDS 50.0%
CACCAACCACCTTGGTTGTT+TGG - chr4.3:28342601-28342620 None:intergenic 50.0%
GAGGATTTGAGCACCAGTGT+AGG - chr4.3:28343101-28343120 None:intergenic 50.0%
GCCTTACCAAACAACCAAGG+TGG + chr4.3:28342592-28342611 MS.gene96786:CDS 50.0%
GTTAGTCCATCCTCCACCAT+AGG - chr4.3:28342196-28342215 None:intergenic 50.0%
TGACCAAAAGACCATCCAGC+TGG - chr4.3:28343076-28343095 None:intergenic 50.0%
TGACCACAATGGAACCAGGA+AGG - chr4.3:28342543-28342562 None:intergenic 50.0%
! AGGGTGTCATGCAGGAGAAA+GGG + chr4.3:28342815-28342834 MS.gene96786:intron 50.0%
! GCAGGAGAAAGGGAGGTATA+AGG + chr4.3:28342825-28342844 MS.gene96786:CDS 50.0%
! TAGGGTGTCATGCAGGAGAA+AGG + chr4.3:28342814-28342833 MS.gene96786:intron 50.0%
! TTTTGTGTAGGTGGGGCTTG+TGG + chr4.3:28342391-28342410 MS.gene96786:intron 50.0%
!! AACCAGGAAGGCACCATCTA+TGG - chr4.3:28342531-28342550 None:intergenic 50.0%
ATCTCCAGCACCACCAACGT+TGG - chr4.3:28342894-28342913 None:intergenic 55.0%
GACCATAGATGGTGCCTTCC+TGG + chr4.3:28342526-28342545 MS.gene96786:CDS 55.0%
GAGGGTTACACCAACCACCT+TGG - chr4.3:28342609-28342628 None:intergenic 55.0%
GCAGTGACCACAATGGAACC+AGG - chr4.3:28342547-28342566 None:intergenic 55.0%
GCTCATGCCACCTTCTATGG+TGG + chr4.3:28342216-28342235 MS.gene96786:CDS 55.0%
GTAGGTGGGGCTTGTGGATA+TGG + chr4.3:28342397-28342416 MS.gene96786:intron 55.0%
GTGCCTTCCTGGTTCCATTG+TGG + chr4.3:28342537-28342556 MS.gene96786:CDS 55.0%
GTGTCATGCAGGAGAAAGGG+AGG + chr4.3:28342818-28342837 MS.gene96786:CDS 55.0%
! GCTCCAGCTGGATGGTCTTT+TGG + chr4.3:28343070-28343089 MS.gene96786:CDS 55.0%
!! ATCACCAACGTTGGTGGTGC+TGG + chr4.3:28342887-28342906 MS.gene96786:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 28342135 28343123 28342135 ID=MS.gene96786
chr4.3 mRNA 28342135 28343123 28342135 ID=MS.gene96786.t1;Parent=MS.gene96786
chr4.3 exon 28342135 28342261 28342135 ID=MS.gene96786.t1.exon1;Parent=MS.gene96786.t1
chr4.3 CDS 28342135 28342261 28342135 ID=cds.MS.gene96786.t1;Parent=MS.gene96786.t1
chr4.3 exon 28342401 28342713 28342401 ID=MS.gene96786.t1.exon2;Parent=MS.gene96786.t1
chr4.3 CDS 28342401 28342713 28342401 ID=cds.MS.gene96786.t1;Parent=MS.gene96786.t1
chr4.3 exon 28342817 28343123 28342817 ID=MS.gene96786.t1.exon3;Parent=MS.gene96786.t1
chr4.3 CDS 28342817 28343123 28342817 ID=cds.MS.gene96786.t1;Parent=MS.gene96786.t1
Gene Sequence

>MS.gene96786

ATGGCTTTCATTGGCTTGGTTTTGGTGTGTTCTCTTACCATGTTCTCCTCTGTTTATGCCTATGGTGGAGGATGGACTAACGCTCATGCCACCTTCTATGGTGGAAGTGATGCTTCAGGAACAATGGGTATGCACCATTTTTCAATAAAAACCACTCCTTGAAATAAAGTTTTGATTTTTAAGCTTCTTTGTAAAAAAAAAAAAAAACAGATCTTGATGCAAAAAACAAGTAACCCATTTCACTGATTTTGTTGTTTTTTGTGTAGGTGGGGCTTGTGGATATGGTAACCTTTACAGTCAAGGGTATGGAACAAACACTGCTGCTTTGAGTACAGCACTTTTCAACAATGGCTTAAGCTGTGGCTCTTGCTATGAAATTAGGTGTGCTAATGACCATAGATGGTGCCTTCCTGGTTCCATTGTGGTCACTGCCACAAATTTCTGTCCTCCAAACAATGCCTTACCAAACAACCAAGGTGGTTGGTGTAACCCTCCTCTCCAACATTTTGATCTTGCTCAACCTGTTTTTCTTCGTATTGCTCAATACAAAGCTGGAATTGTTCCTGTAGATTTTAGAAGGTAGGTTGCTTTTATCAAGCATCTACATTTTTTATATAAATTTTCAATTTTTATGTATTTGGTATAAACTAATTTGTGTTTTTATTGTGGTGAATTTGTGTAGGGTGTCATGCAGGAGAAAGGGAGGTATAAGGTTCACTATCAATGGACATTCTTACTTCAACCTAGTTCTTATCACCAACGTTGGTGGTGCTGGAGATGTACATGCTGCATCCATCAAAGGGTCAAAAACTGGTTGGATATCTATGTCAAGAAACTGGGGACAAAATTGGCAGAGCAACAATTATCTCAATGGTCAAAGTTTGTCTTTTAAGGTTACAACTAGTGATGGTCGTACTGTTGTTTCCAATAATGTTGCTCCAGCTGGATGGTCTTTTGGTCAAACCTACACTGGTGCTCAAATCCTCTAG
Protein sequence

>MS.gene96786.t1

MAFIGLVLVCSLTMFSSVYAYGGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCANDHRWCLPGSIVVTATNFCPPNNALPNNQGGWCNPPLQHFDLAQPVFLRIAQYKAGIVPVDFRRVSCRRKGGIRFTINGHSYFNLVLITNVGGAGDVHAASIKGSKTGWISMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSNNVAPAGWSFGQTYTGAQIL