AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene97202

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97202.t1 MTR_7g013120 95.652 253 11 0 1 253 1 253 0.0 508
MS.gene97202.t1 MTR_7g013140 79.842 253 49 2 1 253 1 251 5.68e-152 423
MS.gene97202.t1 MTR_7g013150 76.378 254 58 2 1 253 1 253 2.29e-146 409
MS.gene97202.t1 MTR_8g058990 75.197 254 61 2 1 253 1 253 6.90e-143 400
MS.gene97202.t1 MTR_8g464350 70.980 255 71 3 1 253 1 254 6.62e-131 370
MS.gene97202.t1 MTR_5g079950 57.490 247 98 4 10 250 10 255 3.30e-98 288
MS.gene97202.t1 MTR_3g094060 56.612 242 100 3 12 251 14 252 2.13e-97 285
MS.gene97202.t1 MTR_3g094040 56.198 242 101 3 12 251 14 252 3.53e-96 282
MS.gene97202.t1 MTR_5g041700 55.645 248 105 3 6 251 2 246 4.67e-96 281
MS.gene97202.t1 MTR_5g075320 54.545 253 105 5 4 251 3 250 3.17e-95 280
MS.gene97202.t1 MTR_2g097030 56.198 242 101 3 13 250 16 256 3.83e-95 280
MS.gene97202.t1 MTR_3g435430 60.444 225 84 3 29 251 25 246 7.82e-95 278
MS.gene97202.t1 MTR_7g061720 58.482 224 90 2 29 250 32 254 2.13e-94 278
MS.gene97202.t1 MTR_4g081950 59.556 225 86 3 29 251 61 282 5.61e-94 278
MS.gene97202.t1 MTR_1g085460 56.769 229 94 3 29 253 30 257 1.72e-91 270
MS.gene97202.t1 MTR_7g011060 53.846 247 104 4 6 251 2 239 6.11e-91 268
MS.gene97202.t1 MTR_4g063975 55.833 240 101 3 15 250 16 254 9.42e-90 266
MS.gene97202.t1 MTR_1g026020 55.022 229 97 4 29 253 29 255 1.72e-89 265
MS.gene97202.t1 MTR_3g466790 53.125 256 112 4 1 251 1 253 3.03e-89 265
MS.gene97202.t1 MTR_3g466760 53.125 256 112 4 1 251 7 259 3.31e-89 265
MS.gene97202.t1 MTR_4g124340 52.889 225 102 2 28 250 60 282 2.61e-86 258
MS.gene97202.t1 MTR_7g111010 48.235 255 127 3 3 253 1 254 9.83e-86 256
MS.gene97202.t1 MTR_7g110990 52.402 229 104 3 29 253 12 239 4.62e-85 253
MS.gene97202.t1 MTR_5g011210 53.275 229 102 4 28 253 36 262 8.38e-83 249
MS.gene97202.t1 MTR_6g012520 52.800 250 108 4 3 251 1 241 4.22e-81 244
MS.gene97202.t1 MTR_4g102450 53.947 228 100 4 29 253 36 261 2.59e-80 242
MS.gene97202.t1 MTR_0040s0140 48.996 249 122 3 7 251 8 255 1.35e-79 240
MS.gene97202.t1 MTR_2g090255 48.571 245 120 3 12 251 8 251 1.45e-78 238
MS.gene97202.t1 MTR_5g076950 53.097 226 102 3 28 251 40 263 1.72e-77 235
MS.gene97202.t1 MTR_0008s0120 49.609 256 69 6 1 253 1 199 1.65e-72 220
MS.gene97202.t1 MTR_3g064510 46.154 234 114 6 28 251 52 283 1.37e-65 206
MS.gene97202.t1 MTR_2g090270 33.333 240 137 7 25 253 31 258 5.48e-34 123
MS.gene97202.t1 MTR_0122s0020 33.333 246 141 7 19 253 31 264 6.48e-33 120
MS.gene97202.t1 MTR_2g090265 31.343 268 155 9 3 253 1 256 5.31e-32 118
MS.gene97202.t1 MTR_6g012500 51.429 105 50 1 147 251 176 279 2.58e-28 109
MS.gene97202.t1 MTR_4g028640 29.091 275 153 11 5 253 6 264 4.48e-22 92.4
MS.gene97202.t1 MTR_0809s0010 29.167 240 141 8 28 253 46 270 6.95e-22 92.0
MS.gene97202.t1 MTR_4g075790 29.796 245 142 8 17 248 11 238 6.52e-20 86.3
MS.gene97202.t1 MTR_0122s0020 33.333 183 99 7 19 190 31 201 2.94e-19 83.6
MS.gene97202.t1 MTR_4g099370 27.059 255 169 8 1 248 1 245 4.57e-19 84.0
MS.gene97202.t1 MTR_0118s0070 28.085 235 142 9 34 253 53 275 2.23e-18 82.4
MS.gene97202.t1 MTR_5g013440 29.237 236 137 10 32 253 32 251 5.29e-18 80.9
MS.gene97202.t1 MTR_4g098930 25.660 265 162 13 1 248 1 247 4.86e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97202.t1 AT5G39280 66.234 231 75 2 23 253 48 275 1.37e-115 332
MS.gene97202.t1 AT5G39300 65.254 236 79 2 18 253 44 276 2.68e-115 332
MS.gene97202.t1 AT5G39270 63.362 232 82 2 22 253 51 279 5.83e-111 321
MS.gene97202.t1 AT5G39290 62.931 232 83 2 22 253 51 279 4.08e-110 318
MS.gene97202.t1 AT5G02260 56.972 251 98 3 10 251 6 255 1.41e-102 299
MS.gene97202.t1 AT2G39700 55.906 254 107 3 1 250 1 253 2.01e-100 293
MS.gene97202.t1 AT5G39310 60.177 226 86 3 29 253 90 312 1.25e-98 291
MS.gene97202.t1 AT2G40610 56.175 251 103 4 3 251 7 252 1.73e-98 288
MS.gene97202.t1 AT2G37640 60.268 224 86 2 29 250 36 258 4.09e-98 288
MS.gene97202.t1 AT5G05290 55.600 250 107 2 4 251 7 254 1.44e-97 286
MS.gene97202.t1 AT3G55500 54.864 257 108 3 1 250 1 256 2.70e-97 285
MS.gene97202.t1 AT5G56320 56.846 241 99 3 13 251 13 250 4.96e-97 285
MS.gene97202.t1 AT5G56320 56.846 241 99 3 13 251 13 250 4.96e-97 285
MS.gene97202.t1 AT5G56320 56.846 241 99 3 13 251 13 250 6.85e-96 283
MS.gene97202.t1 AT1G69530 56.275 247 99 4 11 251 5 248 6.52e-95 279
MS.gene97202.t1 AT1G69530 56.275 247 99 4 11 251 5 248 6.52e-95 279
MS.gene97202.t1 AT2G03090 58.009 231 92 3 23 251 24 251 4.67e-94 277
MS.gene97202.t1 AT1G69530 56.379 243 97 4 11 247 5 244 1.88e-93 276
MS.gene97202.t1 AT2G28950 57.778 225 92 2 29 251 31 254 8.55e-92 271
MS.gene97202.t1 AT5G39260 56.223 233 93 4 22 253 38 262 6.38e-90 267
MS.gene97202.t1 AT2G37640 60.386 207 79 2 46 250 28 233 8.31e-90 265
MS.gene97202.t1 AT3G29030 59.193 223 83 3 29 251 38 252 8.47e-90 266
MS.gene97202.t1 AT1G26770 53.061 245 107 4 12 251 6 247 1.51e-89 265
MS.gene97202.t1 AT1G26770 53.061 245 107 4 12 251 16 257 2.81e-89 265
MS.gene97202.t1 AT4G01630 50.598 251 117 4 7 253 8 255 1.17e-86 258
MS.gene97202.t1 AT1G20190 52.423 227 102 4 31 253 28 252 8.15e-83 248
MS.gene97202.t1 AT1G62980 50.410 244 116 4 13 253 15 256 2.17e-82 247
MS.gene97202.t1 AT1G12560 53.947 228 99 5 29 253 37 261 6.04e-82 246
MS.gene97202.t1 AT1G69530 49.798 247 85 5 11 251 5 218 2.47e-80 241
MS.gene97202.t1 AT1G69530 56.311 206 81 4 11 210 5 207 3.78e-80 241
MS.gene97202.t1 AT3G03220 48.673 226 112 3 28 251 39 262 9.07e-73 223
MS.gene97202.t1 AT4G38210 45.492 244 125 4 12 251 14 253 1.26e-72 223
MS.gene97202.t1 AT3G15370 46.122 245 124 5 10 250 7 247 3.15e-69 214
MS.gene97202.t1 AT1G20190 51.546 194 88 4 64 253 2 193 2.78e-67 207
MS.gene97202.t1 AT3G15370 41.697 271 120 6 14 250 11 277 2.15e-62 197
MS.gene97202.t1 AT4G28250 34.034 238 133 8 28 253 35 260 1.58e-29 112
MS.gene97202.t1 AT2G20750 32.773 238 139 8 28 253 39 267 3.12e-28 108
MS.gene97202.t1 AT4G28250 33.333 237 130 8 28 253 35 254 1.32e-27 107
MS.gene97202.t1 AT1G65680 30.943 265 152 11 3 253 26 273 6.18e-25 100
MS.gene97202.t1 AT2G45110 31.513 238 133 9 32 253 36 259 8.05e-23 94.4
MS.gene97202.t1 AT1G65681 30.088 226 130 9 42 253 11 222 2.61e-20 86.7
MS.gene97202.t1 AT3G60570 28.996 269 158 9 4 253 3 257 7.07e-20 86.3
MS.gene97202.t1 AT4G17030 26.984 252 170 8 3 248 1 244 1.60e-18 82.4
MS.gene97202.t1 AT2G20750 30.645 186 107 8 28 202 39 213 8.48e-16 74.3
MS.gene97202.t1 AT3G45970 27.523 218 127 8 48 249 15 217 2.72e-13 67.8
MS.gene97202.t1 AT4G38400 26.291 213 127 8 52 249 47 244 3.04e-12 65.1
MS.gene97202.t1 AT3G45960 26.570 207 134 7 52 249 46 243 1.09e-11 63.5
MS.gene97202.t1 AT3G45970 26.636 214 126 8 52 249 46 244 9.35e-11 60.8

Find 54 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAGGGCTTGTTGTAATT+TGG 0.191352 7.3:+84683031 None:intergenic
CAAATGGCATTGACTTAAAT+TGG 0.203443 7.3:-84683576 MS.gene97202:CDS
CACACAATTGGGGACAAAAT+TGG 0.208585 7.3:-84682757 MS.gene97202:CDS
CATGGCTTTATCTCACTCTT+TGG 0.222101 7.3:-84683641 MS.gene97202:CDS
GGAACACGTTTATACTTAAC+TGG 0.224439 7.3:+84682923 None:intergenic
TTGGGACACTGGAGTGAATT+TGG 0.231054 7.3:-84682738 MS.gene97202:CDS
TTTGTTGCGGTCACTGTAAT+TGG 0.253764 7.3:+84683064 None:intergenic
GCTCCTTCGAATTGGCAATT+TGG 0.285681 7.3:-84682650 MS.gene97202:CDS
ACCAGAGGCGTCACCATAAA+AGG 0.287880 7.3:+84683537 None:intergenic
ACAACAAGCCCTCTGAAAAT+TGG 0.303180 7.3:-84683024 MS.gene97202:CDS
GATCTCTTCAAACAAGGATA+TGG 0.315630 7.3:-84683199 MS.gene97202:CDS
AGCACTGCTCTATTCAATAA+TGG 0.326683 7.3:-84683157 MS.gene97202:CDS
CGTTCGTTGCTCCTTCGAAT+TGG 0.332821 7.3:-84682658 MS.gene97202:CDS
GTTTCTCATGTTCGTGTTAG+AGG 0.335652 7.3:-84682809 MS.gene97202:CDS
TACGAGGAGCATCATTAAAA+AGG 0.341890 7.3:+84683609 None:intergenic
GGATTTCGATGTCACACAAT+TGG 0.361834 7.3:-84682769 MS.gene97202:CDS
GATTTCGATGTCACACAATT+GGG 0.382188 7.3:-84682768 MS.gene97202:CDS
CACGAGTGATGGAAAGACTT+TGG 0.387949 7.3:-84682687 MS.gene97202:CDS
ACACAATTGGGGACAAAATT+GGG 0.394310 7.3:-84682756 MS.gene97202:CDS
ACGAGTGATGGAAAGACTTT+GGG 0.409816 7.3:-84682686 MS.gene97202:CDS
GCAATTTGGTCAGACTTATG+AGG 0.412316 7.3:-84682636 MS.gene97202:CDS
GTGTTTAATGTTGCCAATGC+TGG 0.436563 7.3:-84682836 MS.gene97202:CDS
ATTGAATAGAGCAGTGCTTA+AGG 0.445050 7.3:+84683162 None:intergenic
GGTGTTAGGTTTGAACTCAA+TGG 0.472314 7.3:-84682884 MS.gene97202:CDS
TTCAATAATGGATTTACTTG+TGG 0.476193 7.3:-84683145 MS.gene97202:CDS
CTCGTACAAGCCATGTCAAA+TGG 0.478409 7.3:-84683592 MS.gene97202:CDS
GAGGGCTTGTTGTAATTTGG+AGG 0.483591 7.3:+84683034 None:intergenic
TCTATTGCTTATTACAAAGC+TGG 0.486159 7.3:-84682953 MS.gene97202:CDS
TTTCTTGTTACCACGAGTGA+TGG 0.501449 7.3:-84682698 MS.gene97202:CDS
CAATTTGGTCAGACTTATGA+GGG 0.506118 7.3:-84682635 MS.gene97202:CDS
TTTGTGTCAACGACCCTCAA+TGG 0.511801 7.3:-84683105 MS.gene97202:CDS
CGTGTTCCATGTGTTAAAAG+TGG 0.514431 7.3:-84682908 MS.gene97202:CDS
TTTCTCATGTTCGTGTTAGA+GGG 0.514891 7.3:-84682808 MS.gene97202:CDS
AGCTTTGTAATAAGCAATAG+AGG 0.519344 7.3:+84682955 None:intergenic
ATGAGAAACATCACCAGCAT+TGG 0.529328 7.3:+84682823 None:intergenic
TAGAGCAGTGCTTAAGGCTG+TGG 0.532284 7.3:+84683168 None:intergenic
GTGTTCCATGTGTTAAAAGT+GGG 0.535105 7.3:-84682907 MS.gene97202:CDS
TAAGTCAATGCCATTTGACA+TGG 0.550841 7.3:+84683582 None:intergenic
GTGTGACATCGAAATCCAAC+CGG 0.556542 7.3:+84682775 None:intergenic
CAATGGTGCATAAAAGATGC+AGG 0.564139 7.3:-84683088 MS.gene97202:CDS
TGGGGACAAAATTGGGACAC+TGG 0.584116 7.3:-84682749 MS.gene97202:CDS
CAATTCGAAGGAGCAACGAA+CGG 0.589796 7.3:+84682659 None:intergenic
GACACTGGAGTGAATTTGGT+AGG 0.601480 7.3:-84682734 MS.gene97202:CDS
ATTTCGATGTCACACAATTG+GGG 0.604167 7.3:-84682767 MS.gene97202:CDS
GAACACGTTTATACTTAACT+GGG 0.611144 7.3:+84682924 None:intergenic
ACGCATGGTTGCAGCACCAG+AGG 0.612142 7.3:+84683522 None:intergenic
GTTAGAGGGTCTAAGACGAC+CGG 0.612512 7.3:-84682794 MS.gene97202:CDS
TGACCAAATTGCCAATTCGA+AGG 0.618113 7.3:+84682647 None:intergenic
GAGGGTCTAAGACGACCGGT+TGG 0.633449 7.3:-84682790 MS.gene97202:CDS
CATTTGACATGGCTTGTACG+AGG 0.634199 7.3:+84683593 None:intergenic
TATGGTGATCTCTTCAAACA+AGG 0.652392 7.3:-84683205 MS.gene97202:CDS
CAAAGTCTTTCCATCACTCG+TGG 0.658912 7.3:+84682688 None:intergenic
TGTTCCATGTGTTAAAAGTG+GGG 0.697172 7.3:-84682906 MS.gene97202:CDS
GTTCCATGTGTTAAAAGTGG+GGG 0.697509 7.3:-84682905 MS.gene97202:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATATCATAAAAAATAACT+TGG + chr7.3:84682781-84682800 None:intergenic 15.0%
!! TCATATTATGATATAATGTA+TGG - chr7.3:84683002-84683021 MS.gene97202:CDS 15.0%
!!! GATTTTTCTTAATTTTGTGT+GGG + chr7.3:84682957-84682976 None:intergenic 20.0%
!!! TGATTTTTCTTAATTTTGTG+TGG + chr7.3:84682958-84682977 None:intergenic 20.0%
! ACCAAGACAATCAAAAAATA+AGG + chr7.3:84683405-84683424 None:intergenic 25.0%
! ATGGTATTTAATTATGCAGA+GGG - chr7.3:84683021-84683040 MS.gene97202:CDS 25.0%
! TATGGTATTTAATTATGCAG+AGG - chr7.3:84683020-84683039 MS.gene97202:CDS 25.0%
!! AGGTGAACATTTTATAACTT+AGG + chr7.3:84683287-84683306 None:intergenic 25.0%
!!! TCCTTATTTTTTGATTGTCT+TGG - chr7.3:84683401-84683420 MS.gene97202:intron 25.0%
!!! TTCAATAATGGATTTACTTG+TGG - chr7.3:84683114-84683133 MS.gene97202:CDS 25.0%
AAAATAACTTGGCAAGAAGA+AGG + chr7.3:84682770-84682789 None:intergenic 30.0%
AGCATCATTAAAAAGGTGAA+AGG + chr7.3:84682646-84682665 None:intergenic 30.0%
GAACACGTTTATACTTAACT+GGG + chr7.3:84683338-84683357 None:intergenic 30.0%
TCTATTGCTTATTACAAAGC+TGG - chr7.3:84683306-84683325 MS.gene97202:intron 30.0%
TGGTATTTAATTATGCAGAG+GGG - chr7.3:84683022-84683041 MS.gene97202:CDS 30.0%
! AGCTTTGTAATAAGCAATAG+AGG + chr7.3:84683307-84683326 None:intergenic 30.0%
!! CAAATGGCATTGACTTAAAT+TGG - chr7.3:84682683-84682702 MS.gene97202:CDS 30.0%
!!! CTCAAATTTTTCGGGATAAA+TGG + chr7.3:84682933-84682952 None:intergenic 30.0%
!!! TTAGGTCAAAGTGTTTTAGT+GGG + chr7.3:84683269-84683288 None:intergenic 30.0%
ACACAATTGGGGACAAAATT+GGG - chr7.3:84683503-84683522 MS.gene97202:intron 35.0%
AGCACTGCTCTATTCAATAA+TGG - chr7.3:84683102-84683121 MS.gene97202:CDS 35.0%
ATTGAATAGAGCAGTGCTTA+AGG + chr7.3:84683100-84683119 None:intergenic 35.0%
ATTTCGATGTCACACAATTG+GGG - chr7.3:84683492-84683511 MS.gene97202:intron 35.0%
CAATTTGGTCAGACTTATGA+GGG - chr7.3:84683624-84683643 MS.gene97202:CDS 35.0%
GATCTCTTCAAACAAGGATA+TGG - chr7.3:84683060-84683079 MS.gene97202:CDS 35.0%
GATTTCGATGTCACACAATT+GGG - chr7.3:84683491-84683510 MS.gene97202:intron 35.0%
GGAACACGTTTATACTTAAC+TGG + chr7.3:84683339-84683358 None:intergenic 35.0%
GGTATTTAATTATGCAGAGG+GGG - chr7.3:84683023-84683042 MS.gene97202:CDS 35.0%
GTGTTCCATGTGTTAAAAGT+GGG - chr7.3:84683352-84683371 MS.gene97202:intron 35.0%
TATGGTGATCTCTTCAAACA+AGG - chr7.3:84683054-84683073 MS.gene97202:CDS 35.0%
TGTTCCATGTGTTAAAAGTG+GGG - chr7.3:84683353-84683372 MS.gene97202:intron 35.0%
TTTCTCATGTTCGTGTTAGA+GGG - chr7.3:84683451-84683470 MS.gene97202:intron 35.0%
! CATCTTTTATGCACCATTGA+GGG + chr7.3:84683170-84683189 None:intergenic 35.0%
! TAAGTCAATGCCATTTGACA+TGG + chr7.3:84682680-84682699 None:intergenic 35.0%
! TGTGTGGGACTCAAATTTTT+CGG + chr7.3:84682942-84682961 None:intergenic 35.0%
!! CTTAGGTCAAAGTGTTTTAG+TGG + chr7.3:84683270-84683289 None:intergenic 35.0%
!! TACGAGGAGCATCATTAAAA+AGG + chr7.3:84682653-84682672 None:intergenic 35.0%
!! TGGAGGACAAAAATTTGTTG+CGG + chr7.3:84683211-84683230 None:intergenic 35.0%
!!! TAGGTCAAAGTGTTTTAGTG+GGG + chr7.3:84683268-84683287 None:intergenic 35.0%
ATGAGAAACATCACCAGCAT+TGG + chr7.3:84683439-84683458 None:intergenic 40.0%
CAATGGTGCATAAAAGATGC+AGG - chr7.3:84683171-84683190 MS.gene97202:CDS 40.0%
CACACAATTGGGGACAAAAT+TGG - chr7.3:84683502-84683521 MS.gene97202:intron 40.0%
CGTGTTCCATGTGTTAAAAG+TGG - chr7.3:84683351-84683370 MS.gene97202:intron 40.0%
GAAGAAGGAAAACTTACGCA+TGG + chr7.3:84682755-84682774 None:intergenic 40.0%
GCAATTTGGTCAGACTTATG+AGG - chr7.3:84683623-84683642 MS.gene97202:CDS 40.0%
GGATTTCGATGTCACACAAT+TGG - chr7.3:84683490-84683509 MS.gene97202:intron 40.0%
GGTGTTAGGTTTGAACTCAA+TGG - chr7.3:84683375-84683394 MS.gene97202:intron 40.0%
GTGTTTAATGTTGCCAATGC+TGG - chr7.3:84683423-84683442 MS.gene97202:intron 40.0%
GTTCCATGTGTTAAAAGTGG+GGG - chr7.3:84683354-84683373 MS.gene97202:intron 40.0%
GTTTCTCATGTTCGTGTTAG+AGG - chr7.3:84683450-84683469 MS.gene97202:intron 40.0%
TGACCAAATTGCCAATTCGA+AGG + chr7.3:84683615-84683634 None:intergenic 40.0%
TTTCTTGTTACCACGAGTGA+TGG - chr7.3:84683561-84683580 MS.gene97202:CDS 40.0%
TTTGTTGCGGTCACTGTAAT+TGG + chr7.3:84683198-84683217 None:intergenic 40.0%
! ACAACAAGCCCTCTGAAAAT+TGG - chr7.3:84683235-84683254 MS.gene97202:intron 40.0%
! ACGAGTGATGGAAAGACTTT+GGG - chr7.3:84683573-84683592 MS.gene97202:CDS 40.0%
! GATGCTCATGCAACCTTTTA+TGG - chr7.3:84682709-84682728 MS.gene97202:CDS 40.0%
! GCATCTTTTATGCACCATTG+AGG + chr7.3:84683171-84683190 None:intergenic 40.0%
! GGGTTACACCAATTTTCAGA+GGG + chr7.3:84683246-84683265 None:intergenic 40.0%
! GTGTGGGACTCAAATTTTTC+GGG + chr7.3:84682941-84682960 None:intergenic 40.0%
!! TCAGAGGGCTTGTTGTAATT+TGG + chr7.3:84683231-84683250 None:intergenic 40.0%
!!! AGGTCAAAGTGTTTTAGTGG+GGG + chr7.3:84683267-84683286 None:intergenic 40.0%
CAAAGTCTTTCCATCACTCG+TGG + chr7.3:84683574-84683593 None:intergenic 45.0%
CAATTCGAAGGAGCAACGAA+CGG + chr7.3:84683603-84683622 None:intergenic 45.0%
CTCGTACAAGCCATGTCAAA+TGG - chr7.3:84682667-84682686 MS.gene97202:CDS 45.0%
GACACTGGAGTGAATTTGGT+AGG - chr7.3:84683525-84683544 MS.gene97202:CDS 45.0%
GCTCCTTCGAATTGGCAATT+TGG - chr7.3:84683609-84683628 MS.gene97202:CDS 45.0%
GTGTGACATCGAAATCCAAC+CGG + chr7.3:84683487-84683506 None:intergenic 45.0%
TTGGGACACTGGAGTGAATT+TGG - chr7.3:84683521-84683540 MS.gene97202:intron 45.0%
TTTGTGTCAACGACCCTCAA+TGG - chr7.3:84683154-84683173 MS.gene97202:CDS 45.0%
! CACGAGTGATGGAAAGACTT+TGG - chr7.3:84683572-84683591 MS.gene97202:CDS 45.0%
! CATTTGACATGGCTTGTACG+AGG + chr7.3:84682669-84682688 None:intergenic 45.0%
! GGGGTTACACCAATTTTCAG+AGG + chr7.3:84683247-84683266 None:intergenic 45.0%
!! ACACCCCCACTTTTAACACA+TGG + chr7.3:84683360-84683379 None:intergenic 45.0%
!! GAGGGCTTGTTGTAATTTGG+AGG + chr7.3:84683228-84683247 None:intergenic 45.0%
!! GTGTTAAAAGTGGGGGTGTT+AGG - chr7.3:84683361-84683380 MS.gene97202:intron 45.0%
!!! GGTCAAAGTGTTTTAGTGGG+GGG + chr7.3:84683266-84683285 None:intergenic 45.0%
AATTATGCAGAGGGGGCTTG+TGG - chr7.3:84683030-84683049 MS.gene97202:CDS 50.0%
CGTTCGTTGCTCCTTCGAAT+TGG - chr7.3:84683601-84683620 MS.gene97202:CDS 50.0%
TAGAGCAGTGCTTAAGGCTG+TGG + chr7.3:84683094-84683113 None:intergenic 50.0%
TGGGGACAAAATTGGGACAC+TGG - chr7.3:84683510-84683529 MS.gene97202:intron 50.0%
! GTTAGAGGGTCTAAGACGAC+CGG - chr7.3:84683465-84683484 MS.gene97202:intron 50.0%
!! ACCAGAGGCGTCACCATAAA+AGG + chr7.3:84682725-84682744 None:intergenic 50.0%
!! ACCTTTTATGGTGACGCCTC+TGG - chr7.3:84682721-84682740 MS.gene97202:CDS 50.0%
ACGCATGGTTGCAGCACCAG+AGG + chr7.3:84682740-84682759 None:intergenic 60.0%
GCAGAGGGGGCTTGTGGTTA+TGG - chr7.3:84683036-84683055 MS.gene97202:CDS 60.0%
! GAGGGTCTAAGACGACCGGT+TGG - chr7.3:84683469-84683488 MS.gene97202:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 84682619 84683662 84682619 ID=MS.gene97202
chr7.3 mRNA 84682619 84683662 84682619 ID=MS.gene97202.t1;Parent=MS.gene97202
chr7.3 exon 84683524 84683662 84683524 ID=MS.gene97202.t1.exon1;Parent=MS.gene97202.t1
chr7.3 CDS 84683524 84683662 84683524 ID=cds.MS.gene97202.t1;Parent=MS.gene97202.t1
chr7.3 exon 84682619 84683241 84682619 ID=MS.gene97202.t1.exon2;Parent=MS.gene97202.t1
chr7.3 CDS 84682619 84683241 84682619 ID=cds.MS.gene97202.t1;Parent=MS.gene97202.t1
Gene Sequence

>MS.gene97202

ATGGCTTTATCTCACTCTTTGGTTCCTTTCACCTTTTTAATGATGCTCCTCGTACAAGCCATGTCAAATGGCATTGACTTAAATTGGTACGATGCTCATGCAACCTTTTATGGTGACGCCTCTGGTGCTGCAACCATGCGTAAGTTTTCCTTCTTCTTGCCAAGTTATTTTTTATGATATGTAAGTCTCAGATAGATAAAGATCAGACGACTCATATTTTAATTTTTCTTTAAAGTTAATTGATATTTTAAAATTAATATATAAGTTGTCTAATATTCATTTGAATTTGAGATCACAACTATGCATGATTTCCATTTATCCCGAAAAATTTGAGTCCCACACAAAATTAAGAAAAATCATTTTTAATTAATTTTTTTCTTTGTTCATATTATGATATAATGTATGGTATTTAATTATGCAGAGGGGGCTTGTGGTTATGGTGATCTCTTCAAACAAGGATATGGACTTGAGACCACAGCCTTAAGCACTGCTCTATTCAATAATGGATTTACTTGTGGTGCATGTTTTCAAATAATTTGTGTCAACGACCCTCAATGGTGCATAAAAGATGCAGGTCCAATTACAGTGACCGCAACAAATTTTTGTCCTCCAAATTACAACAAGCCCTCTGAAAATTGGTGTAACCCCCCACTAAAACACTTTGACCTAAGTTATAAAATGTTCACCTCTATTGCTTATTACAAAGCTGGTATCATCCCAGTTAAGTATAAACGTGTTCCATGTGTTAAAAGTGGGGGTGTTAGGTTTGAACTCAATGGAAATCCTTATTTTTTGATTGTCTTGGTGTTTAATGTTGCCAATGCTGGTGATGTTTCTCATGTTCGTGTTAGAGGGTCTAAGACGACCGGTTGGATTTCGATGTCACACAATTGGGGACAAAATTGGGACACTGGAGTGAATTTGGTAGGACAAAGCTTGTCATTTCTTGTTACCACGAGTGATGGAAAGACTTTGGGTTTTCCGTTCGTTGCTCCTTCGAATTGGCAATTTGGTCAGACTTATGAGGGCAAGCAAAATTTTTAG
Protein sequence

>MS.gene97202.t1

MALSHSLVPFTFLMMLLVQAMSNGIDLNWYDAHATFYGDASGAATMQGACGYGDLFKQGYGLETTALSTALFNNGFTCGACFQIICVNDPQWCIKDAGPITVTATNFCPPNYNKPSENWCNPPLKHFDLSYKMFTSIAYYKAGIIPVKYKRVPCVKSGGVRFELNGNPYFLIVLVFNVANAGDVSHVRVRGSKTTGWISMSHNWGQNWDTGVNLVGQSLSFLVTTSDGKTLGFPFVAPSNWQFGQTYEGKQNF