Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97204.t1 | XP_003621419.1 | 94.3 | 212 | 12 | 0 | 1 | 212 | 1 | 212 | 7.00E-117 | 429.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97204.t1 | Q9FL77 | 69.5 | 190 | 56 | 1 | 23 | 212 | 50 | 237 | 3.1e-81 | 302.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97204.t1 | G7L587 | 94.3 | 212 | 12 | 0 | 1 | 212 | 1 | 212 | 5.1e-117 | 429.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene003384 | MS.gene97204 | PPI |
| MS.gene97204 | MS.gene28934 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97204.t1 | MTR_7g013140 | 94.340 | 212 | 12 | 0 | 1 | 212 | 1 | 212 | 8.26e-152 | 421 |
| MS.gene97204.t1 | MTR_7g013150 | 82.710 | 214 | 35 | 1 | 1 | 212 | 1 | 214 | 9.78e-135 | 378 |
| MS.gene97204.t1 | MTR_7g013120 | 77.570 | 214 | 46 | 2 | 1 | 212 | 1 | 214 | 1.09e-125 | 355 |
| MS.gene97204.t1 | MTR_8g058990 | 72.897 | 214 | 56 | 1 | 1 | 212 | 1 | 214 | 2.35e-115 | 329 |
| MS.gene97204.t1 | MTR_8g464350 | 70.698 | 215 | 60 | 2 | 1 | 212 | 1 | 215 | 1.40e-110 | 317 |
| MS.gene97204.t1 | MTR_7g061720 | 63.187 | 182 | 65 | 1 | 28 | 207 | 32 | 213 | 3.18e-82 | 245 |
| MS.gene97204.t1 | MTR_4g063975 | 60.656 | 183 | 70 | 1 | 27 | 207 | 31 | 213 | 4.87e-81 | 242 |
| MS.gene97204.t1 | MTR_5g079950 | 53.991 | 213 | 91 | 2 | 1 | 206 | 1 | 213 | 2.59e-80 | 240 |
| MS.gene97204.t1 | MTR_2g097030 | 60.440 | 182 | 70 | 1 | 28 | 207 | 34 | 215 | 9.57e-80 | 239 |
| MS.gene97204.t1 | MTR_3g094060 | 57.635 | 203 | 81 | 3 | 7 | 206 | 9 | 209 | 2.46e-79 | 238 |
| MS.gene97204.t1 | MTR_3g094040 | 55.769 | 208 | 86 | 4 | 3 | 206 | 4 | 209 | 5.39e-79 | 237 |
| MS.gene97204.t1 | MTR_5g075320 | 54.206 | 214 | 90 | 4 | 4 | 212 | 3 | 213 | 1.73e-77 | 233 |
| MS.gene97204.t1 | MTR_3g435430 | 60.428 | 187 | 70 | 2 | 28 | 212 | 25 | 209 | 1.78e-77 | 233 |
| MS.gene97204.t1 | MTR_7g011060 | 56.311 | 206 | 81 | 3 | 7 | 212 | 6 | 202 | 6.60e-77 | 231 |
| MS.gene97204.t1 | MTR_5g041700 | 54.146 | 205 | 87 | 3 | 7 | 206 | 1 | 203 | 1.42e-75 | 228 |
| MS.gene97204.t1 | MTR_4g081950 | 53.110 | 209 | 88 | 3 | 6 | 206 | 33 | 239 | 2.88e-74 | 226 |
| MS.gene97204.t1 | MTR_3g466760 | 52.752 | 218 | 95 | 3 | 1 | 212 | 7 | 222 | 7.18e-73 | 221 |
| MS.gene97204.t1 | MTR_3g466790 | 52.752 | 218 | 95 | 3 | 1 | 212 | 1 | 216 | 1.17e-72 | 221 |
| MS.gene97204.t1 | MTR_1g085460 | 58.919 | 185 | 70 | 4 | 28 | 207 | 30 | 213 | 5.07e-72 | 219 |
| MS.gene97204.t1 | MTR_1g026020 | 53.081 | 211 | 91 | 4 | 1 | 207 | 5 | 211 | 2.83e-70 | 215 |
| MS.gene97204.t1 | MTR_5g011210 | 50.718 | 209 | 94 | 4 | 7 | 207 | 10 | 217 | 1.58e-69 | 213 |
| MS.gene97204.t1 | MTR_7g111010 | 49.763 | 211 | 99 | 5 | 3 | 207 | 1 | 210 | 1.14e-67 | 208 |
| MS.gene97204.t1 | MTR_0040s0140 | 45.872 | 218 | 112 | 2 | 1 | 212 | 1 | 218 | 1.40e-67 | 208 |
| MS.gene97204.t1 | MTR_2g090255 | 45.972 | 211 | 109 | 2 | 7 | 212 | 4 | 214 | 1.88e-67 | 207 |
| MS.gene97204.t1 | MTR_4g124340 | 51.323 | 189 | 87 | 3 | 27 | 212 | 60 | 246 | 2.62e-67 | 208 |
| MS.gene97204.t1 | MTR_7g110990 | 55.435 | 184 | 76 | 4 | 28 | 206 | 12 | 194 | 3.60e-67 | 206 |
| MS.gene97204.t1 | MTR_4g102450 | 50.000 | 206 | 94 | 4 | 10 | 207 | 12 | 216 | 1.16e-66 | 206 |
| MS.gene97204.t1 | MTR_6g012520 | 56.500 | 200 | 78 | 3 | 7 | 206 | 8 | 198 | 2.80e-66 | 204 |
| MS.gene97204.t1 | MTR_5g076950 | 53.804 | 184 | 82 | 2 | 27 | 208 | 40 | 222 | 4.02e-65 | 202 |
| MS.gene97204.t1 | MTR_0008s0120 | 46.759 | 216 | 55 | 4 | 1 | 212 | 1 | 160 | 8.91e-57 | 179 |
| MS.gene97204.t1 | MTR_3g064510 | 45.455 | 198 | 93 | 6 | 27 | 212 | 52 | 246 | 1.84e-54 | 176 |
| MS.gene97204.t1 | MTR_2g090265 | 30.837 | 227 | 126 | 11 | 3 | 210 | 1 | 215 | 2.26e-23 | 94.4 |
| MS.gene97204.t1 | MTR_2g090270 | 32.663 | 199 | 110 | 8 | 24 | 210 | 31 | 217 | 7.03e-23 | 93.2 |
| MS.gene97204.t1 | MTR_0122s0020 | 31.818 | 220 | 124 | 9 | 1 | 208 | 16 | 221 | 5.94e-22 | 90.9 |
| MS.gene97204.t1 | MTR_4g028640 | 30.435 | 207 | 117 | 9 | 18 | 212 | 32 | 223 | 2.56e-18 | 81.3 |
| MS.gene97204.t1 | MTR_0809s0010 | 28.718 | 195 | 111 | 7 | 27 | 208 | 46 | 225 | 4.94e-18 | 80.5 |
| MS.gene97204.t1 | MTR_0122s0020 | 32.768 | 177 | 96 | 7 | 24 | 189 | 37 | 201 | 2.55e-17 | 77.4 |
| MS.gene97204.t1 | MTR_4g099370 | 28.934 | 197 | 123 | 7 | 14 | 203 | 14 | 200 | 3.21e-17 | 77.8 |
| MS.gene97204.t1 | MTR_5g013440 | 29.064 | 203 | 115 | 9 | 14 | 203 | 15 | 201 | 7.01e-16 | 74.3 |
| MS.gene97204.t1 | MTR_6g012500 | 56.452 | 62 | 27 | 0 | 151 | 212 | 181 | 242 | 1.30e-15 | 73.9 |
| MS.gene97204.t1 | MTR_4g075790 | 27.451 | 204 | 119 | 7 | 16 | 207 | 11 | 197 | 1.62e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97204.t1 | AT5G39280 | 60.714 | 224 | 74 | 2 | 1 | 212 | 15 | 236 | 4.76e-101 | 294 |
| MS.gene97204.t1 | AT5G39300 | 69.474 | 190 | 56 | 1 | 23 | 212 | 50 | 237 | 1.93e-100 | 292 |
| MS.gene97204.t1 | AT5G39290 | 68.254 | 189 | 58 | 1 | 24 | 212 | 54 | 240 | 4.00e-99 | 289 |
| MS.gene97204.t1 | AT5G39270 | 68.254 | 189 | 58 | 1 | 24 | 212 | 54 | 240 | 1.75e-98 | 287 |
| MS.gene97204.t1 | AT5G39310 | 65.405 | 185 | 62 | 1 | 28 | 212 | 90 | 272 | 1.63e-87 | 261 |
| MS.gene97204.t1 | AT5G56320 | 57.692 | 208 | 84 | 2 | 7 | 212 | 8 | 213 | 3.26e-84 | 250 |
| MS.gene97204.t1 | AT5G56320 | 57.692 | 208 | 84 | 2 | 7 | 212 | 8 | 213 | 3.26e-84 | 250 |
| MS.gene97204.t1 | AT5G02260 | 63.536 | 181 | 64 | 1 | 28 | 206 | 32 | 212 | 7.46e-84 | 249 |
| MS.gene97204.t1 | AT5G56320 | 57.692 | 208 | 84 | 2 | 7 | 212 | 8 | 213 | 2.64e-83 | 249 |
| MS.gene97204.t1 | AT2G37640 | 62.983 | 181 | 65 | 1 | 28 | 206 | 36 | 216 | 1.15e-82 | 246 |
| MS.gene97204.t1 | AT2G39700 | 61.878 | 181 | 67 | 1 | 28 | 206 | 31 | 211 | 5.33e-82 | 244 |
| MS.gene97204.t1 | AT2G28950 | 60.773 | 181 | 69 | 1 | 28 | 206 | 31 | 211 | 1.41e-79 | 238 |
| MS.gene97204.t1 | AT5G39260 | 60.309 | 194 | 69 | 3 | 20 | 212 | 37 | 223 | 2.82e-78 | 235 |
| MS.gene97204.t1 | AT1G69530 | 58.462 | 195 | 75 | 3 | 14 | 206 | 15 | 205 | 5.72e-78 | 234 |
| MS.gene97204.t1 | AT1G69530 | 58.462 | 195 | 75 | 3 | 14 | 206 | 15 | 205 | 5.72e-78 | 234 |
| MS.gene97204.t1 | AT1G69530 | 58.462 | 195 | 75 | 3 | 14 | 206 | 15 | 205 | 8.19e-78 | 233 |
| MS.gene97204.t1 | AT1G69530 | 58.462 | 195 | 75 | 3 | 14 | 206 | 15 | 205 | 8.36e-78 | 234 |
| MS.gene97204.t1 | AT1G69530 | 58.462 | 195 | 75 | 3 | 14 | 206 | 15 | 205 | 9.16e-78 | 233 |
| MS.gene97204.t1 | AT3G55500 | 54.028 | 211 | 88 | 3 | 5 | 206 | 4 | 214 | 9.27e-78 | 234 |
| MS.gene97204.t1 | AT2G03090 | 57.143 | 203 | 82 | 3 | 7 | 206 | 8 | 208 | 9.63e-78 | 234 |
| MS.gene97204.t1 | AT2G40610 | 57.500 | 200 | 80 | 3 | 10 | 206 | 12 | 209 | 1.05e-77 | 234 |
| MS.gene97204.t1 | AT5G05290 | 60.638 | 188 | 69 | 3 | 28 | 212 | 32 | 217 | 5.68e-76 | 229 |
| MS.gene97204.t1 | AT2G37640 | 62.722 | 169 | 61 | 1 | 40 | 206 | 23 | 191 | 1.35e-75 | 228 |
| MS.gene97204.t1 | AT3G29030 | 59.459 | 185 | 68 | 2 | 28 | 212 | 38 | 215 | 5.67e-75 | 227 |
| MS.gene97204.t1 | AT1G26770 | 55.392 | 204 | 83 | 3 | 10 | 207 | 4 | 205 | 6.21e-74 | 224 |
| MS.gene97204.t1 | AT1G26770 | 55.392 | 204 | 83 | 3 | 10 | 207 | 14 | 215 | 8.71e-74 | 224 |
| MS.gene97204.t1 | AT1G12560 | 54.011 | 187 | 82 | 3 | 28 | 212 | 37 | 221 | 1.72e-72 | 221 |
| MS.gene97204.t1 | AT4G01630 | 51.659 | 211 | 95 | 5 | 7 | 212 | 8 | 216 | 1.47e-69 | 213 |
| MS.gene97204.t1 | AT1G62980 | 50.000 | 208 | 101 | 2 | 7 | 212 | 10 | 216 | 2.82e-69 | 212 |
| MS.gene97204.t1 | AT1G20190 | 55.495 | 182 | 76 | 3 | 30 | 207 | 28 | 208 | 9.63e-67 | 206 |
| MS.gene97204.t1 | AT3G03220 | 53.191 | 188 | 85 | 2 | 27 | 212 | 39 | 225 | 6.43e-65 | 201 |
| MS.gene97204.t1 | AT4G38210 | 41.148 | 209 | 119 | 2 | 8 | 212 | 8 | 216 | 6.64e-60 | 188 |
| MS.gene97204.t1 | AT3G15370 | 43.318 | 217 | 112 | 7 | 1 | 212 | 1 | 211 | 1.13e-53 | 172 |
| MS.gene97204.t1 | AT1G20190 | 55.405 | 148 | 61 | 3 | 63 | 206 | 2 | 148 | 9.31e-52 | 166 |
| MS.gene97204.t1 | AT3G15370 | 38.462 | 247 | 111 | 9 | 1 | 212 | 1 | 241 | 2.24e-47 | 157 |
| MS.gene97204.t1 | AT4G28250 | 31.122 | 196 | 111 | 8 | 25 | 208 | 33 | 216 | 1.88e-20 | 86.7 |
| MS.gene97204.t1 | AT2G20750 | 30.667 | 225 | 124 | 10 | 7 | 208 | 8 | 223 | 3.81e-20 | 86.3 |
| MS.gene97204.t1 | AT1G65680 | 31.980 | 197 | 109 | 9 | 25 | 208 | 44 | 228 | 6.43e-20 | 85.5 |
| MS.gene97204.t1 | AT4G28250 | 30.256 | 195 | 108 | 8 | 25 | 208 | 33 | 210 | 2.45e-18 | 80.9 |
| MS.gene97204.t1 | AT2G45110 | 29.688 | 192 | 112 | 6 | 31 | 210 | 36 | 216 | 1.09e-17 | 79.3 |
| MS.gene97204.t1 | AT1G65681 | 30.000 | 180 | 105 | 5 | 41 | 210 | 11 | 179 | 2.06e-16 | 75.1 |
| MS.gene97204.t1 | AT2G20750 | 29.717 | 212 | 117 | 10 | 1 | 189 | 1 | 203 | 2.42e-15 | 72.4 |
| MS.gene97204.t1 | AT3G60570 | 26.852 | 216 | 134 | 6 | 4 | 208 | 10 | 212 | 1.00e-14 | 71.2 |
| MS.gene97204.t1 | AT4G17030 | 26.923 | 208 | 138 | 7 | 1 | 203 | 1 | 199 | 1.38e-14 | 70.9 |
| MS.gene97204.t1 | AT4G28250 | 29.714 | 175 | 96 | 7 | 25 | 189 | 33 | 190 | 1.97e-14 | 69.7 |
| MS.gene97204.t1 | AT4G28250 | 29.714 | 175 | 96 | 7 | 25 | 189 | 33 | 190 | 2.36e-14 | 69.3 |
| MS.gene97204.t1 | AT3G45970 | 29.143 | 175 | 94 | 7 | 47 | 206 | 15 | 174 | 2.01e-11 | 61.6 |
Find 57 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATGAGCATCGTACCAATT+TGG | 0.200212 | 7.3:+84666393 | None:intergenic |
| TTGGAATATTGGAACGAATT+TGG | 0.216299 | 7.3:-84665505 | None:intergenic |
| GTCTAACACTTTGGTTCCTT+TGG | 0.256747 | 7.3:-84666460 | MS.gene97204:CDS |
| TACGAGGAGCATCATGAAAA+AGG | 0.321545 | 7.3:+84666437 | None:intergenic |
| CGTGTTCCATGCATTAAAAC+TGG | 0.322549 | 7.3:-84665672 | MS.gene97204:CDS |
| GGTTCCTATGTCACGCAATT+GGG | 0.335226 | 7.3:-84665535 | MS.gene97204:CDS |
| CATGAGCATCGTACCAATTT+GGG | 0.339274 | 7.3:+84666394 | None:intergenic |
| GCAGAGGGAGCTTGTGGTTA+TGG | 0.345450 | 7.3:-84665987 | MS.gene97204:intron |
| TGGCTGGCATTGACCCAAAT+TGG | 0.353682 | 7.3:-84666407 | MS.gene97204:CDS |
| TTTGTTGCGGTTATCGTGAT+AGG | 0.354832 | 7.3:+84665828 | None:intergenic |
| AGCACTGCTCTATTCAATAA+TGG | 0.360305 | 7.3:-84665921 | MS.gene97204:CDS |
| GGGTTCCTATGTCACGCAAT+TGG | 0.362649 | 7.3:-84665536 | MS.gene97204:CDS |
| TCAGTGGTCTTGCTGTAATC+TGG | 0.378673 | 7.3:+84665795 | None:intergenic |
| TTCATGATGCTCCTCGTAAA+GGG | 0.402214 | 7.3:-84666432 | MS.gene97204:CDS |
| CGACCCACAATGGTGCATAA+AGG | 0.404687 | 7.3:-84665859 | MS.gene97204:CDS |
| GGAACACGTCGATATTTAAC+GGG | 0.404956 | 7.3:+84665687 | None:intergenic |
| AGTATCAAGGGGTCTAATAC+TGG | 0.408483 | 7.3:-84665561 | MS.gene97204:CDS |
| GTGTTCAATGTTGCCAATGC+TGG | 0.419882 | 7.3:-84665600 | MS.gene97204:CDS |
| ACCCGCTGCATCACCGTAGA+AGG | 0.421455 | 7.3:+84666368 | None:intergenic |
| CACCCTTTATGCACCATTGT+GGG | 0.424099 | 7.3:+84665856 | None:intergenic |
| ACAGCAAGACCACTGACATT+TGG | 0.434617 | 7.3:-84665788 | MS.gene97204:CDS |
| GATCTCTTCAAACAAGGGTA+TGG | 0.441783 | 7.3:-84665963 | MS.gene97204:CDS |
| GATGCTCATGCAACCTTCTA+CGG | 0.442027 | 7.3:-84666381 | MS.gene97204:CDS |
| GACCCACAATGGTGCATAAA+GGG | 0.450130 | 7.3:-84665858 | MS.gene97204:CDS |
| CTCCTCGTAAAGGGCATGGC+TGG | 0.450828 | 7.3:-84666423 | MS.gene97204:CDS |
| TTTCATGATGCTCCTCGTAA+AGG | 0.462175 | 7.3:-84666433 | MS.gene97204:CDS |
| TGTTTCTCGTGTTAGTATCA+AGG | 0.464353 | 7.3:-84665574 | MS.gene97204:CDS |
| TTCAATAATGGATTTACTTG+TGG | 0.476193 | 7.3:-84665909 | MS.gene97204:CDS |
| CATGGCTATGTCTAACACTT+TGG | 0.491922 | 7.3:-84666469 | MS.gene97204:CDS |
| AGGGTATGGGCTTGCAACTA+CGG | 0.497920 | 7.3:-84665949 | MS.gene97204:CDS |
| GTTTCTCGTGTTAGTATCAA+GGG | 0.498724 | 7.3:-84665573 | MS.gene97204:CDS |
| TGGAACACGTCGATATTTAA+CGG | 0.500310 | 7.3:+84665686 | None:intergenic |
| GCACCCTTTATGCACCATTG+TGG | 0.503658 | 7.3:+84665855 | None:intergenic |
| TTGTTGCGGTTATCGTGATA+GGG | 0.519560 | 7.3:+84665829 | None:intergenic |
| ACCTTCTACGGTGATGCAGC+GGG | 0.524229 | 7.3:-84666369 | MS.gene97204:CDS |
| ATCTCTTCAAACAAGGGTAT+GGG | 0.533065 | 7.3:-84665962 | MS.gene97204:CDS |
| GTTCCTATGTCACGCAATTG+GGG | 0.548993 | 7.3:-84665534 | MS.gene97204:CDS |
| TCAAGGGGTCTAATACTGGA+TGG | 0.550792 | 7.3:-84665557 | MS.gene97204:CDS |
| GGTGTTAGGTTTGAAATCAA+AGG | 0.556743 | 7.3:-84665648 | MS.gene97204:CDS |
| GTGTTCCATGCATTAAAACT+GGG | 0.567747 | 7.3:-84665671 | MS.gene97204:CDS |
| ACGAGAAACATCTCCAGCAT+TGG | 0.571727 | 7.3:+84665587 | None:intergenic |
| CAAGGGGTCTAATACTGGAT+GGG | 0.588570 | 7.3:-84665556 | MS.gene97204:CDS |
| TATTATGCAGAGGGAGCTTG+TGG | 0.589305 | 7.3:-84665993 | MS.gene97204:intron |
| AACCTTCTACGGTGATGCAG+CGG | 0.592492 | 7.3:-84666370 | MS.gene97204:CDS |
| TATGGTGATCTCTTCAAACA+AGG | 0.598795 | 7.3:-84665969 | MS.gene97204:CDS |
| GATGCTCCTCGTAAAGGGCA+TGG | 0.605480 | 7.3:-84666427 | MS.gene97204:CDS |
| CTTGTGTCGACGACCCACAA+TGG | 0.630491 | 7.3:-84665869 | MS.gene97204:CDS |
| TGCCAGCCATGCCCTTTACG+AGG | 0.647367 | 7.3:+84666421 | None:intergenic |
| TTTCTCGTGTTAGTATCAAG+GGG | 0.647748 | 7.3:-84665572 | MS.gene97204:CDS |
| GTGGTCTTGCTGTAATCTGG+AGG | 0.654551 | 7.3:+84665798 | None:intergenic |
| TTCCTATGTCACGCAATTGG+GGG | 0.667015 | 7.3:-84665533 | MS.gene97204:CDS |
| TTCTACGGTGATGCAGCGGG+TGG | 0.667920 | 7.3:-84666366 | MS.gene97204:CDS |
| TGTTCCATGCATTAAAACTG+GGG | 0.668445 | 7.3:-84665670 | MS.gene97204:CDS |
| AGGGTTGCACCAAATGTCAG+TGG | 0.668476 | 7.3:+84665779 | None:intergenic |
| ATGGTGATCTCTTCAAACAA+GGG | 0.669728 | 7.3:-84665968 | MS.gene97204:CDS |
| GTTCCATGCATTAAAACTGG+GGG | 0.703952 | 7.3:-84665669 | MS.gene97204:CDS |
| GAACACGTCGATATTTAACG+GGG | 0.756543 | 7.3:+84665688 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTATTAGTAAATACA+TGG | - | chr7.3:84665768-84665787 | MS.gene97204:CDS | 10.0% |
| !!! | TTTGATATATTTTTTTGTTG+AGG | - | chr7.3:84665920-84665939 | MS.gene97204:CDS | 15.0% |
| ! | ACCAAAACAAGCAAAAAATT+AGG | + | chr7.3:84666356-84666375 | None:intergenic | 25.0% |
| ! | ATATATGGTATATTATGCAG+AGG | - | chr7.3:84665971-84665990 | MS.gene97204:CDS | 25.0% |
| ! | CCAAAACAAGCAAAAAATTA+GGG | + | chr7.3:84666355-84666374 | None:intergenic | 25.0% |
| ! | TATATGGTATATTATGCAGA+GGG | - | chr7.3:84665972-84665991 | MS.gene97204:CDS | 25.0% |
| !!! | TTCAATAATGGATTTACTTG+TGG | - | chr7.3:84666065-84666084 | MS.gene97204:intron | 25.0% |
| !! | CTCAAATCAAAGTGTTTTTG+CGG | + | chr7.3:84666221-84666240 | None:intergenic | 30.0% |
| !!! | CCCTAATTTTTTGCTTGTTT+TGG | - | chr7.3:84666352-84666371 | MS.gene97204:intron | 30.0% |
| AGCACTGCTCTATTCAATAA+TGG | - | chr7.3:84666053-84666072 | MS.gene97204:intron | 35.0% | |
| ATGGTGATCTCTTCAAACAA+GGG | - | chr7.3:84666006-84666025 | MS.gene97204:intron | 35.0% | |
| ATTGAGAACAATAGCATGCA+TGG | - | chr7.3:84665817-84665836 | MS.gene97204:CDS | 35.0% | |
| GAAACCATGCGTAAGTTATA+GGG | - | chr7.3:84665632-84665651 | MS.gene97204:CDS | 35.0% | |
| GTGTTCCATGCATTAAAACT+GGG | - | chr7.3:84666303-84666322 | MS.gene97204:intron | 35.0% | |
| GTTTCTCGTGTTAGTATCAA+GGG | - | chr7.3:84666401-84666420 | MS.gene97204:CDS | 35.0% | |
| TATGGTGATCTCTTCAAACA+AGG | - | chr7.3:84666005-84666024 | MS.gene97204:intron | 35.0% | |
| TCTATTGCTTACGAAAAAGC+AGG | - | chr7.3:84666257-84666276 | MS.gene97204:intron | 35.0% | |
| TGAAACCATGCGTAAGTTAT+AGG | - | chr7.3:84665631-84665650 | MS.gene97204:CDS | 35.0% | |
| TGGAACACGTCGATATTTAA+CGG | + | chr7.3:84666291-84666310 | None:intergenic | 35.0% | |
| TGTTCCATGCATTAAAACTG+GGG | - | chr7.3:84666304-84666323 | MS.gene97204:intron | 35.0% | |
| TGTTTCTCGTGTTAGTATCA+AGG | - | chr7.3:84666400-84666419 | MS.gene97204:CDS | 35.0% | |
| TTTCTCGTGTTAGTATCAAG+GGG | - | chr7.3:84666402-84666421 | MS.gene97204:CDS | 35.0% | |
| ! | ATCTCTTCAAACAAGGGTAT+GGG | - | chr7.3:84666012-84666031 | MS.gene97204:intron | 35.0% |
| ! | GGTGTTAGGTTTGAAATCAA+AGG | - | chr7.3:84666326-84666345 | MS.gene97204:intron | 35.0% |
| !! | AAATCAAAGTGTTTTTGCGG+AGG | + | chr7.3:84666218-84666237 | None:intergenic | 35.0% |
| !! | AATCAAAGTGTTTTTGCGGA+GGG | + | chr7.3:84666217-84666236 | None:intergenic | 35.0% |
| !! | TGGAGGACAAAAATTTGTTG+CGG | + | chr7.3:84666162-84666181 | None:intergenic | 35.0% |
| !!! | TGCTTTTTCGTAAGCAATAG+AGG | + | chr7.3:84666258-84666277 | None:intergenic | 35.0% |
| AGCATCATGAAAAAGGCCAA+AGG | + | chr7.3:84665533-84665552 | None:intergenic | 40.0% | |
| AGTATCAAGGGGTCTAATAC+TGG | - | chr7.3:84666413-84666432 | MS.gene97204:CDS | 40.0% | |
| CGTGTTCCATGCATTAAAAC+TGG | - | chr7.3:84666302-84666321 | MS.gene97204:intron | 40.0% | |
| GAACACGTCGATATTTAACG+GGG | + | chr7.3:84666289-84666308 | None:intergenic | 40.0% | |
| GATCTCTTCAAACAAGGGTA+TGG | - | chr7.3:84666011-84666030 | MS.gene97204:intron | 40.0% | |
| GGAACACGTCGATATTTAAC+GGG | + | chr7.3:84666290-84666309 | None:intergenic | 40.0% | |
| GTTCCATGCATTAAAACTGG+GGG | - | chr7.3:84666305-84666324 | MS.gene97204:intron | 40.0% | |
| TGGGGGCAAAATTGGAATAT+TGG | - | chr7.3:84666458-84666477 | MS.gene97204:CDS | 40.0% | |
| TTCATGATGCTCCTCGTAAA+GGG | - | chr7.3:84665542-84665561 | MS.gene97204:CDS | 40.0% | |
| TTGTTGCGGTTATCGTGATA+GGG | + | chr7.3:84666148-84666167 | None:intergenic | 40.0% | |
| TTTCATGATGCTCCTCGTAA+AGG | - | chr7.3:84665541-84665560 | MS.gene97204:CDS | 40.0% | |
| TTTGTTGCGGTTATCGTGAT+AGG | + | chr7.3:84666149-84666168 | None:intergenic | 40.0% | |
| ! | CATGAGCATCGTACCAATTT+GGG | + | chr7.3:84665583-84665602 | None:intergenic | 40.0% |
| ! | GTCTAACACTTTGGTTCCTT+TGG | - | chr7.3:84665514-84665533 | MS.gene97204:CDS | 40.0% |
| !! | TACGAGGAGCATCATGAAAA+AGG | + | chr7.3:84665540-84665559 | None:intergenic | 40.0% |
| ACAGCAAGACCACTGACATT+TGG | - | chr7.3:84666186-84666205 | MS.gene97204:intron | 45.0% | |
| ACCACCCTATAACTTACGCA+TGG | + | chr7.3:84665639-84665658 | None:intergenic | 45.0% | |
| ACCATGCGTAAGTTATAGGG+TGG | - | chr7.3:84665635-84665654 | MS.gene97204:CDS | 45.0% | |
| ACGAGAAACATCTCCAGCAT+TGG | + | chr7.3:84666390-84666409 | None:intergenic | 45.0% | |
| CAAGGGGTCTAATACTGGAT+GGG | - | chr7.3:84666418-84666437 | MS.gene97204:CDS | 45.0% | |
| CACCCTTTATGCACCATTGT+GGG | + | chr7.3:84666121-84666140 | None:intergenic | 45.0% | |
| GACCCACAATGGTGCATAAA+GGG | - | chr7.3:84666116-84666135 | MS.gene97204:intron | 45.0% | |
| GATGCTCATGCAACCTTCTA+CGG | - | chr7.3:84665593-84665612 | MS.gene97204:CDS | 45.0% | |
| GGTTCCTATGTCACGCAATT+GGG | - | chr7.3:84666439-84666458 | MS.gene97204:CDS | 45.0% | |
| GTGTTCAATGTTGCCAATGC+TGG | - | chr7.3:84666374-84666393 | MS.gene97204:CDS | 45.0% | |
| GTTCCTATGTCACGCAATTG+GGG | - | chr7.3:84666440-84666459 | MS.gene97204:CDS | 45.0% | |
| TATTATGCAGAGGGAGCTTG+TGG | - | chr7.3:84665981-84666000 | MS.gene97204:CDS | 45.0% | |
| TCAAGGGGTCTAATACTGGA+TGG | - | chr7.3:84666417-84666436 | MS.gene97204:CDS | 45.0% | |
| TTCCTATGTCACGCAATTGG+GGG | - | chr7.3:84666441-84666460 | MS.gene97204:CDS | 45.0% | |
| ! | GCATGAGCATCGTACCAATT+TGG | + | chr7.3:84665584-84665603 | None:intergenic | 45.0% |
| ! | TCAGTGGTCTTGCTGTAATC+TGG | + | chr7.3:84666182-84666201 | None:intergenic | 45.0% |
| !! | ACACCCCCAGTTTTAATGCA+TGG | + | chr7.3:84666311-84666330 | None:intergenic | 45.0% |
| !! | GCATTAAAACTGGGGGTGTT+AGG | - | chr7.3:84666312-84666331 | MS.gene97204:intron | 45.0% |
| !!! | TGCATGGCTGCTACTTTTGT+TGG | - | chr7.3:84665833-84665852 | MS.gene97204:CDS | 45.0% |
| !!! | CTTTTTATATAAATTATATA+TGG | - | chr7.3:84665956-84665975 | MS.gene97204:CDS | 5.0% |
| !!! | TAAAAAAAAATCTTTTTTTT+TGG | - | chr7.3:84665880-84665899 | MS.gene97204:CDS | 5.0% |
| AACCTTCTACGGTGATGCAG+CGG | - | chr7.3:84665604-84665623 | MS.gene97204:CDS | 50.0% | |
| AGGGTATGGGCTTGCAACTA+CGG | - | chr7.3:84666025-84666044 | MS.gene97204:intron | 50.0% | |
| AGGGTTGCACCAAATGTCAG+TGG | + | chr7.3:84666198-84666217 | None:intergenic | 50.0% | |
| CACGCAATTGGGGGCAAAAT+TGG | - | chr7.3:84666450-84666469 | MS.gene97204:CDS | 50.0% | |
| CGACCCACAATGGTGCATAA+AGG | - | chr7.3:84666115-84666134 | MS.gene97204:intron | 50.0% | |
| GCACCCTTTATGCACCATTG+TGG | + | chr7.3:84666122-84666141 | None:intergenic | 50.0% | |
| GGGTTCCTATGTCACGCAAT+TGG | - | chr7.3:84666438-84666457 | MS.gene97204:CDS | 50.0% | |
| ! | GTGGTCTTGCTGTAATCTGG+AGG | + | chr7.3:84666179-84666198 | None:intergenic | 50.0% |
| !! | TGGCTGGCATTGACCCAAAT+TGG | - | chr7.3:84665567-84665586 | MS.gene97204:CDS | 50.0% |
| ACCTTCTACGGTGATGCAGC+GGG | - | chr7.3:84665605-84665624 | MS.gene97204:CDS | 55.0% | |
| GATGCTCCTCGTAAAGGGCA+TGG | - | chr7.3:84665547-84665566 | MS.gene97204:CDS | 55.0% | |
| GCAGAGGGAGCTTGTGGTTA+TGG | - | chr7.3:84665987-84666006 | MS.gene97204:intron | 55.0% | |
| TGCCCCCAATTGCGTGACAT+AGG | + | chr7.3:84666446-84666465 | None:intergenic | 55.0% | |
| ! | CTTGTGTCGACGACCCACAA+TGG | - | chr7.3:84666105-84666124 | MS.gene97204:intron | 55.0% |
| ACCCGCTGCATCACCGTAGA+AGG | + | chr7.3:84665609-84665628 | None:intergenic | 60.0% | |
| TGCCAGCCATGCCCTTTACG+AGG | + | chr7.3:84665556-84665575 | None:intergenic | 60.0% | |
| TTCTACGGTGATGCAGCGGG+TGG | - | chr7.3:84665608-84665627 | MS.gene97204:CDS | 60.0% | |
| ! | CTCCTCGTAAAGGGCATGGC+TGG | - | chr7.3:84665551-84665570 | MS.gene97204:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 84665506 | 84666490 | 84665506 | ID=MS.gene97204 |
| chr7.3 | mRNA | 84665506 | 84666490 | 84665506 | ID=MS.gene97204.t1;Parent=MS.gene97204 |
| chr7.3 | exon | 84666355 | 84666490 | 84666355 | ID=MS.gene97204.t1.exon1;Parent=MS.gene97204.t1 |
| chr7.3 | CDS | 84666355 | 84666490 | 84666355 | ID=cds.MS.gene97204.t1;Parent=MS.gene97204.t1 |
| chr7.3 | exon | 84665506 | 84666005 | 84665506 | ID=MS.gene97204.t1.exon2;Parent=MS.gene97204.t1 |
| chr7.3 | CDS | 84665506 | 84666005 | 84665506 | ID=cds.MS.gene97204.t1;Parent=MS.gene97204.t1 |
| Gene Sequence |
| Protein sequence |
