AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene97207

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97207.t1 MTR_7g013150 92.490 253 19 0 1 253 1 253 4.49e-179 492
MS.gene97207.t1 MTR_7g013140 84.585 253 37 1 1 253 1 251 1.35e-161 447
MS.gene97207.t1 MTR_7g013120 77.953 254 54 2 1 253 1 253 1.47e-150 420
MS.gene97207.t1 MTR_8g058990 71.937 253 71 0 1 253 1 253 3.94e-135 381
MS.gene97207.t1 MTR_8g464350 68.504 254 79 1 1 253 1 254 1.35e-130 369
MS.gene97207.t1 MTR_5g079950 61.883 223 83 1 30 250 33 255 3.22e-103 300
MS.gene97207.t1 MTR_3g094060 57.200 250 103 2 3 250 4 251 2.26e-102 298
MS.gene97207.t1 MTR_3g094040 57.895 247 100 2 3 247 4 248 5.72e-102 297
MS.gene97207.t1 MTR_2g097030 60.987 223 85 1 30 250 34 256 1.00e-99 291
MS.gene97207.t1 MTR_7g061720 60.987 223 85 1 30 250 32 254 7.23e-99 289
MS.gene97207.t1 MTR_5g041700 58.577 239 95 2 11 247 6 242 2.02e-98 288
MS.gene97207.t1 MTR_5g075320 55.422 249 107 2 4 250 3 249 2.70e-97 285
MS.gene97207.t1 MTR_3g435430 61.364 220 81 2 30 247 25 242 2.20e-95 280
MS.gene97207.t1 MTR_4g081950 54.762 252 101 3 7 247 29 278 3.25e-95 281
MS.gene97207.t1 MTR_3g466760 54.510 255 108 4 1 249 5 257 1.29e-94 278
MS.gene97207.t1 MTR_7g011060 54.286 245 104 2 6 250 2 238 2.65e-94 277
MS.gene97207.t1 MTR_4g063975 60.268 224 87 1 29 250 31 254 7.89e-94 276
MS.gene97207.t1 MTR_3g466790 60.811 222 83 2 30 249 32 251 2.10e-93 275
MS.gene97207.t1 MTR_1g085460 59.389 229 87 4 30 253 30 257 6.71e-92 271
MS.gene97207.t1 MTR_1g026020 57.018 228 93 3 30 253 29 255 3.23e-91 270
MS.gene97207.t1 MTR_7g111010 51.190 252 114 5 10 253 4 254 3.98e-87 259
MS.gene97207.t1 MTR_7g110990 55.022 229 97 4 30 253 12 239 2.45e-85 254
MS.gene97207.t1 MTR_4g124340 52.679 224 101 3 30 250 61 282 1.05e-84 254
MS.gene97207.t1 MTR_6g012520 54.839 248 104 2 3 250 1 240 3.59e-84 251
MS.gene97207.t1 MTR_5g011210 49.213 254 121 4 7 253 10 262 3.67e-84 252
MS.gene97207.t1 MTR_0040s0140 48.374 246 122 2 10 250 9 254 2.88e-83 249
MS.gene97207.t1 MTR_5g076950 53.125 224 102 2 29 250 40 262 1.49e-82 248
MS.gene97207.t1 MTR_2g090255 47.131 244 125 2 11 250 7 250 6.80e-81 243
MS.gene97207.t1 MTR_4g102450 52.423 227 104 3 30 253 36 261 1.88e-79 240
MS.gene97207.t1 MTR_3g064510 47.303 241 112 6 22 250 45 282 1.51e-71 221
MS.gene97207.t1 MTR_0008s0120 46.275 255 79 3 1 253 1 199 6.57e-71 216
MS.gene97207.t1 MTR_2g090270 32.500 240 138 8 26 253 31 258 1.69e-31 117
MS.gene97207.t1 MTR_0122s0020 33.740 246 137 10 21 253 32 264 2.62e-31 116
MS.gene97207.t1 MTR_2g090265 30.970 268 156 11 3 253 1 256 1.09e-30 115
MS.gene97207.t1 MTR_6g012500 53.398 103 48 0 148 250 176 278 1.32e-30 115
MS.gene97207.t1 MTR_4g028640 31.474 251 143 11 17 253 29 264 1.39e-25 101
MS.gene97207.t1 MTR_0809s0010 28.269 283 158 9 1 253 3 270 6.44e-25 100
MS.gene97207.t1 MTR_0118s0070 28.511 235 140 10 35 253 53 275 9.82e-20 86.3
MS.gene97207.t1 MTR_4g075790 29.839 248 139 9 18 249 11 239 6.15e-19 83.6
MS.gene97207.t1 MTR_4g099370 28.226 248 156 10 10 248 11 245 7.15e-19 83.2
MS.gene97207.t1 MTR_0122s0020 32.967 182 99 8 21 191 32 201 2.67e-18 80.9
MS.gene97207.t1 MTR_5g013440 28.253 269 156 13 3 253 2 251 8.10e-18 80.5
MS.gene97207.t1 MTR_4g098930 26.894 264 160 11 3 249 1 248 5.54e-16 75.5
MS.gene97207.t1 MTR_1g085365 55.556 54 24 0 197 250 4 57 4.55e-13 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97207.t1 AT5G39280 68.085 235 73 1 19 253 43 275 1.05e-122 350
MS.gene97207.t1 AT5G39300 68.831 231 70 1 23 253 48 276 2.12e-121 347
MS.gene97207.t1 AT5G39270 66.234 231 76 1 23 253 51 279 2.92e-120 344
MS.gene97207.t1 AT5G39290 65.801 231 77 1 23 253 51 279 2.21e-119 342
MS.gene97207.t1 AT5G02260 64.126 223 78 1 30 250 32 254 1.67e-106 308
MS.gene97207.t1 AT2G39700 58.130 246 100 2 7 250 9 253 1.03e-103 301
MS.gene97207.t1 AT5G39310 63.111 225 80 2 30 253 90 312 5.11e-103 302
MS.gene97207.t1 AT2G37640 60.090 223 87 1 30 250 36 258 5.10e-101 295
MS.gene97207.t1 AT3G55500 54.545 253 108 2 5 250 4 256 2.59e-100 293
MS.gene97207.t1 AT5G56320 58.577 239 95 2 14 250 13 249 1.22e-99 291
MS.gene97207.t1 AT5G56320 58.577 239 95 2 14 250 13 249 1.22e-99 291
MS.gene97207.t1 AT5G56320 58.577 239 95 2 14 250 13 249 8.72e-99 291
MS.gene97207.t1 AT5G05290 61.435 223 81 3 30 249 32 252 3.46e-97 285
MS.gene97207.t1 AT2G40610 57.851 242 97 3 11 249 11 250 7.50e-97 284
MS.gene97207.t1 AT2G03090 56.198 242 102 2 11 250 11 250 1.12e-96 283
MS.gene97207.t1 AT1G69530 59.641 223 86 2 30 250 27 247 1.51e-96 284
MS.gene97207.t1 AT1G69530 60.455 220 83 2 30 247 27 244 2.46e-96 283
MS.gene97207.t1 AT1G69530 60.455 220 83 2 30 247 27 244 2.46e-96 283
MS.gene97207.t1 AT2G28950 58.744 223 90 1 30 250 31 253 2.20e-94 278
MS.gene97207.t1 AT5G39260 58.621 232 88 3 23 253 38 262 2.33e-94 278
MS.gene97207.t1 AT2G37640 59.716 211 83 1 42 250 23 233 2.48e-94 277
MS.gene97207.t1 AT1G26770 56.504 246 100 4 12 253 6 248 5.25e-94 276
MS.gene97207.t1 AT3G29030 61.009 218 78 2 30 247 38 248 7.16e-94 276
MS.gene97207.t1 AT1G26770 56.504 246 100 4 12 253 16 258 8.00e-94 276
MS.gene97207.t1 AT4G01630 51.984 252 112 5 7 253 8 255 1.11e-88 263
MS.gene97207.t1 AT1G12560 53.744 227 100 4 30 253 37 261 2.28e-86 258
MS.gene97207.t1 AT1G20190 54.425 226 98 3 32 253 28 252 2.09e-85 255
MS.gene97207.t1 AT1G62980 48.374 246 123 3 11 253 12 256 2.42e-82 247
MS.gene97207.t1 AT1G69530 62.431 181 64 2 30 208 27 205 7.55e-82 246
MS.gene97207.t1 AT1G69530 62.431 181 64 2 30 208 27 205 9.06e-82 244
MS.gene97207.t1 AT3G03220 51.339 224 106 2 29 250 39 261 2.72e-79 240
MS.gene97207.t1 AT4G38210 41.667 252 143 2 3 250 1 252 1.42e-74 228
MS.gene97207.t1 AT1G20190 53.886 193 84 3 65 253 2 193 1.40e-70 215
MS.gene97207.t1 AT3G15370 43.902 246 130 5 10 251 7 248 1.59e-70 217
MS.gene97207.t1 AT3G15370 39.493 276 129 7 10 251 7 278 3.66e-64 202
MS.gene97207.t1 AT4G28250 32.353 238 134 11 30 253 36 260 8.13e-27 105
MS.gene97207.t1 AT2G20750 33.891 239 134 11 29 253 39 267 4.96e-26 103
MS.gene97207.t1 AT1G65680 31.203 266 150 12 3 253 26 273 1.55e-25 101
MS.gene97207.t1 AT4G28250 31.646 237 131 11 30 253 36 254 5.48e-25 100
MS.gene97207.t1 AT2G45110 28.889 270 162 9 3 253 1 259 5.53e-25 100
MS.gene97207.t1 AT1G65681 31.390 223 130 7 43 253 11 222 9.74e-24 95.9
MS.gene97207.t1 AT3G60570 29.114 237 142 7 30 253 34 257 3.09e-20 87.4
MS.gene97207.t1 AT3G45970 31.507 219 116 9 49 249 15 217 2.01e-17 79.3
MS.gene97207.t1 AT4G17030 26.641 259 166 10 3 250 1 246 1.29e-16 77.4
MS.gene97207.t1 AT3G60570 27.982 218 131 7 49 253 5 209 2.78e-16 75.5
MS.gene97207.t1 AT3G45970 30.698 215 115 9 53 249 46 244 6.99e-15 72.8
MS.gene97207.t1 AT4G38400 29.954 217 113 11 53 249 47 244 6.10e-14 70.1
MS.gene97207.t1 AT3G45960 31.980 197 109 10 66 249 11 195 7.68e-14 68.9
MS.gene97207.t1 AT3G45960 30.952 210 120 10 53 249 46 243 1.09e-13 69.3

Find 60 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCTTCCAATTGGCAATT+TGG 0.192444 7.3:-84610507 MS.gene97207:CDS
TTGGACTCCTGGATCTAATT+TGG 0.210946 7.3:-84610595 MS.gene97207:CDS
GTTTCTCATGTGAGTATTAA+AGG 0.232919 7.3:-84610663 MS.gene97207:CDS
CCCTTATTTCTTTCTAGCTT+TGG 0.238741 7.3:-84610712 MS.gene97207:CDS
ACTCGAAGACCACCGATATT+TGG 0.251454 7.3:-84610878 MS.gene97207:CDS
CTAGCAGCATTGACTTAAAA+TGG 0.283683 7.3:-84611609 MS.gene97207:CDS
CACGCAATTGGGGACAAAAT+TGG 0.290938 7.3:-84610614 MS.gene97207:CDS
ACCAAAGCTAGAAAGAAATA+AGG 0.300240 7.3:+84610711 None:intergenic
GATGCTCATGCAACCTTCTA+TGG 0.306725 7.3:-84611583 MS.gene97207:CDS
GATCTCTTCAAACAAGGATA+TGG 0.334674 7.3:-84611053 MS.gene97207:CDS
GGATTTCCATGTCACGCAAT+TGG 0.349848 7.3:-84610626 MS.gene97207:CDS
TTTGTTGCGGTTATCGTGAT+AGG 0.354832 7.3:+84610918 None:intergenic
CGATCCTCAATGGTGCATAA+AGG 0.355600 7.3:-84610949 MS.gene97207:CDS
GATTTCCATGTCACGCAATT+GGG 0.376885 7.3:-84610625 MS.gene97207:CDS
GACGATACCTGCTTTGTAAT+AGG 0.384346 7.3:+84610800 None:intergenic
GGAACACGTCGATATTTAAC+GGG 0.404956 7.3:+84610777 None:intergenic
ACCAGCTGCGTCACCATAGA+AGG 0.408935 7.3:+84611570 None:intergenic
AGTACAGCTCTATTCAATAA+TGG 0.412808 7.3:-84611011 MS.gene97207:CDS
CCAAAGCTAGAAAGAAATAA+GGG 0.424398 7.3:+84610712 None:intergenic
TTTCTCATGTGAGTATTAAA+GGG 0.433008 7.3:-84610662 MS.gene97207:CDS
ATTCGGTTGCTCCTTCCAAT+TGG 0.443039 7.3:-84610515 MS.gene97207:CDS
GATCCTCAATGGTGCATAAA+GGG 0.454210 7.3:-84610948 MS.gene97207:CDS
TCGGTGGTCTTCGAGTAATC+TGG 0.456534 7.3:+84610885 None:intergenic
TGGGGACAAAATTGGACTCC+TGG 0.464996 7.3:-84610606 MS.gene97207:CDS
TGCTTTGTAATAGGCAATAG+AGG 0.484820 7.3:+84610809 None:intergenic
GTGTACAATGTTGCCAATGC+TGG 0.492882 7.3:-84610690 MS.gene97207:CDS
ACCTTCTATGGTGACGCAGC+TGG 0.497545 7.3:-84611571 MS.gene97207:CDS
TGGAACACGTCGATATTTAA+CGG 0.500310 7.3:+84610776 None:intergenic
TTTCAAGTTAGTACAAGTGA+TGG 0.503641 7.3:-84610555 MS.gene97207:CDS
GGTGTTAGATTTGAGATCAA+AGG 0.518196 7.3:-84610738 MS.gene97207:CDS
TTGTCCCCAATTGCGTGACA+TGG 0.518870 7.3:+84610620 None:intergenic
TTGTTGCGGTTATCGTGATA+GGG 0.528029 7.3:+84610919 None:intergenic
ATGAGAAACATCACCAGCAT+TGG 0.529328 7.3:+84610677 None:intergenic
TTAAAGGGTCTAAGACTGGT+TGG 0.531613 7.3:-84610647 MS.gene97207:CDS
CGTGTTCCATGCATCAAAAG+TGG 0.536521 7.3:-84610762 MS.gene97207:CDS
GGTCTGTCCAAATTGCCAAT+TGG 0.537195 7.3:+84610500 None:intergenic
TCTATTGCCTATTACAAAGC+AGG 0.544747 7.3:-84610807 MS.gene97207:CDS
AGTATTAAAGGGTCTAAGAC+TGG 0.548218 7.3:-84610651 MS.gene97207:CDS
TGTCCTACCAAATTAGATCC+AGG 0.552069 7.3:+84610588 None:intergenic
TGGACAGACCTACGAGGCCA+AGG 0.553270 7.3:-84610487 MS.gene97207:CDS
TTTGTGTCAACGATCCTCAA+TGG 0.553629 7.3:-84610959 MS.gene97207:CDS
AAAATTTCCCTTGGCCTCGT+AGG 0.559321 7.3:+84610479 None:intergenic
GCACCCTTTATGCACCATTG+AGG 0.561751 7.3:+84610945 None:intergenic
TATTTGAAAACAAGCACCAC+AGG 0.572041 7.3:+84610983 None:intergenic
ATTTCCATGTCACGCAATTG+GGG 0.577980 7.3:-84610624 MS.gene97207:CDS
ACTCCTGGATCTAATTTGGT+AGG 0.596348 7.3:-84610591 MS.gene97207:CDS
TTCAATAATGGACTTACCTG+TGG 0.598171 7.3:-84610999 MS.gene97207:CDS
TGTCCAAATTGCCAATTGGA+AGG 0.609662 7.3:+84610504 None:intergenic
TTCTATGGTGACGCAGCTGG+TGG 0.617803 7.3:-84611568 MS.gene97207:CDS
TAGTTGACATGACTTGTATG+AGG 0.623183 7.3:+84611629 None:intergenic
TGTACTAACTTGAAATGACA+AGG 0.641185 7.3:+84610563 None:intergenic
GGACAGACCTACGAGGCCAA+GGG 0.645522 7.3:-84610486 MS.gene97207:CDS
TATGGTGATCTCTTCAAACA+AGG 0.652392 7.3:-84611059 MS.gene97207:CDS
AAAAGAATGAGACATAGTCA+TGG 0.655580 7.3:+84611678 None:intergenic
GTTCCATGCATCAAAAGTGG+AGG 0.667109 7.3:-84610759 MS.gene97207:CDS
GTGGTCTTCGAGTAATCTGG+AGG 0.686927 7.3:+84610888 None:intergenic
GGGATTACACCAAATATCGG+TGG 0.692962 7.3:+84610869 None:intergenic
TAGAGCTGTACTTAGTGCTG+CGG 0.703803 7.3:+84611022 None:intergenic
GAACACGTCGATATTTAACG+GGG 0.756543 7.3:+84610778 None:intergenic
GCAATTTGGACAGACCTACG+AGG 0.762624 7.3:-84610493 MS.gene97207:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTTTATTTGTGTA+CGG + chr7.3:84611004-84611023 None:intergenic 10.0%
!! CATTAAAAAATAACATGTAA+AGG + chr7.3:84610649-84610668 None:intergenic 15.0%
!!! AAAAACTTTAACGTTTTATT+CGG - chr7.3:84611620-84611639 MS.gene97207:CDS 15.0%
!!! TTTTTTAATGATAGATCAAA+TGG - chr7.3:84610930-84610949 MS.gene97207:CDS 15.0%
!!! TTTTTTTTATATTGGTGTAT+CGG + chr7.3:84610863-84610882 None:intergenic 15.0%
!! TTTGTGATTGTATATTGTTA+TGG + chr7.3:84610703-84610722 None:intergenic 20.0%
!!! TTAATTTTATAACTTACGCA+TGG + chr7.3:84610615-84610634 None:intergenic 20.0%
! AACATCATGAAAAAGACAAA+AGG + chr7.3:84610503-84610522 None:intergenic 25.0%
! ATGGTATTTAATTATGCAGA+GGG - chr7.3:84611060-84611079 MS.gene97207:CDS 25.0%
! TATGGTATTTAATTATGCAG+AGG - chr7.3:84611059-84611078 MS.gene97207:CDS 25.0%
! TTTCTCATGTGAGTATTAAA+GGG - chr7.3:84611490-84611509 MS.gene97207:intron 25.0%
ACCAAAGCTAGAAAGAAATA+AGG + chr7.3:84611444-84611463 None:intergenic 30.0%
AGTACAGCTCTATTCAATAA+TGG - chr7.3:84611141-84611160 MS.gene97207:intron 30.0%
CCAAAGCTAGAAAGAAATAA+GGG + chr7.3:84611443-84611462 None:intergenic 30.0%
GTTTCTCATGTGAGTATTAA+AGG - chr7.3:84611489-84611508 MS.gene97207:intron 30.0%
TGGTATTTAATTATGCAGAG+GGG - chr7.3:84611061-84611080 MS.gene97207:CDS 30.0%
TGTACTAACTTGAAATGACA+AGG + chr7.3:84611592-84611611 None:intergenic 30.0%
TTTATTTGTGTACGGACATA+GGG + chr7.3:84610996-84611015 None:intergenic 30.0%
!! CTTAAATCGAAGTGTTTTTG+CGG + chr7.3:84611309-84611328 None:intergenic 30.0%
!! TTAAATCGAAGTGTTTTTGC+GGG + chr7.3:84611308-84611327 None:intergenic 30.0%
!! TTTCAAGTTAGTACAAGTGA+TGG - chr7.3:84611597-84611616 MS.gene97207:CDS 30.0%
!! TTTTATTTGTGTACGGACAT+AGG + chr7.3:84610997-84611016 None:intergenic 30.0%
GATCTCTTCAAACAAGGATA+TGG - chr7.3:84611099-84611118 MS.gene97207:intron 35.0%
GGTATTTAATTATGCAGAGG+GGG - chr7.3:84611062-84611081 MS.gene97207:CDS 35.0%
TATATTGGTGTATCGGATGT+AGG + chr7.3:84610856-84610875 None:intergenic 35.0%
TATGGTGATCTCTTCAAACA+AGG - chr7.3:84611093-84611112 MS.gene97207:intron 35.0%
TATTTGAAAACAAGCACCAC+AGG + chr7.3:84611172-84611191 None:intergenic 35.0%
TCTATTGCCTATTACAAAGC+AGG - chr7.3:84611345-84611364 MS.gene97207:intron 35.0%
TGCTTTGTAATAGGCAATAG+AGG + chr7.3:84611346-84611365 None:intergenic 35.0%
TGGAACACGTCGATATTTAA+CGG + chr7.3:84611379-84611398 None:intergenic 35.0%
! AGTATTAAAGGGTCTAAGAC+TGG - chr7.3:84611501-84611520 MS.gene97207:intron 35.0%
! GGTGTTAGATTTGAGATCAA+AGG - chr7.3:84611414-84611433 MS.gene97207:intron 35.0%
! TAGTTGACATGACTTGTATG+AGG + chr7.3:84610526-84610545 None:intergenic 35.0%
!! CCCTTATTTCTTTCTAGCTT+TGG - chr7.3:84611440-84611459 MS.gene97207:intron 35.0%
!! CTAGCAGCATTGACTTAAAA+TGG - chr7.3:84610543-84610562 MS.gene97207:CDS 35.0%
!! TAAATCGAAGTGTTTTTGCG+GGG + chr7.3:84611307-84611326 None:intergenic 35.0%
!! TGGAGGACAAAAATTTGTTG+CGG + chr7.3:84611250-84611269 None:intergenic 35.0%
!! TTCAATAATGGACTTACCTG+TGG - chr7.3:84611153-84611172 MS.gene97207:intron 35.0%
ACTCCTGGATCTAATTTGGT+AGG - chr7.3:84611561-84611580 MS.gene97207:CDS 40.0%
ATGAGAAACATCACCAGCAT+TGG + chr7.3:84611478-84611497 None:intergenic 40.0%
ATTTCCATGTCACGCAATTG+GGG - chr7.3:84611528-84611547 MS.gene97207:intron 40.0%
GAACACGTCGATATTTAACG+GGG + chr7.3:84611377-84611396 None:intergenic 40.0%
GACGATACCTGCTTTGTAAT+AGG + chr7.3:84611355-84611374 None:intergenic 40.0%
GATCCTCAATGGTGCATAAA+GGG - chr7.3:84611204-84611223 MS.gene97207:intron 40.0%
GATTTCCATGTCACGCAATT+GGG - chr7.3:84611527-84611546 MS.gene97207:intron 40.0%
GGAACACGTCGATATTTAAC+GGG + chr7.3:84611378-84611397 None:intergenic 40.0%
TGTCCAAATTGCCAATTGGA+AGG + chr7.3:84611651-84611670 None:intergenic 40.0%
TGTCCTACCAAATTAGATCC+AGG + chr7.3:84611567-84611586 None:intergenic 40.0%
TTGGACTCCTGGATCTAATT+TGG - chr7.3:84611557-84611576 MS.gene97207:CDS 40.0%
TTGTTGCGGTTATCGTGATA+GGG + chr7.3:84611236-84611255 None:intergenic 40.0%
TTTGTGTCAACGATCCTCAA+TGG - chr7.3:84611193-84611212 MS.gene97207:intron 40.0%
TTTGTTGCGGTTATCGTGAT+AGG + chr7.3:84611237-84611256 None:intergenic 40.0%
! TTAAAGGGTCTAAGACTGGT+TGG - chr7.3:84611505-84611524 MS.gene97207:intron 40.0%
!! AAATCGAAGTGTTTTTGCGG+GGG + chr7.3:84611306-84611325 None:intergenic 40.0%
AAAATTTCCCTTGGCCTCGT+AGG + chr7.3:84611676-84611695 None:intergenic 45.0%
ACTCGAAGACCACCGATATT+TGG - chr7.3:84611274-84611293 MS.gene97207:intron 45.0%
ATTCGGTTGCTCCTTCCAAT+TGG - chr7.3:84611637-84611656 MS.gene97207:CDS 45.0%
CACGCAATTGGGGACAAAAT+TGG - chr7.3:84611538-84611557 MS.gene97207:intron 45.0%
CGATCCTCAATGGTGCATAA+AGG - chr7.3:84611203-84611222 MS.gene97207:intron 45.0%
CGGGGGATTACACCAAATAT+CGG + chr7.3:84611289-84611308 None:intergenic 45.0%
CGTGTTCCATGCATCAAAAG+TGG - chr7.3:84611390-84611409 MS.gene97207:intron 45.0%
GATGCTCATGCAACCTTCTA+TGG - chr7.3:84610569-84610588 MS.gene97207:CDS 45.0%
GCTCCTTCCAATTGGCAATT+TGG - chr7.3:84611645-84611664 MS.gene97207:CDS 45.0%
GGATTTCCATGTCACGCAAT+TGG - chr7.3:84611526-84611545 MS.gene97207:intron 45.0%
GGGATTACACCAAATATCGG+TGG + chr7.3:84611286-84611305 None:intergenic 45.0%
GGTCTGTCCAAATTGCCAAT+TGG + chr7.3:84611655-84611674 None:intergenic 45.0%
GTGTACAATGTTGCCAATGC+TGG - chr7.3:84611462-84611481 MS.gene97207:intron 45.0%
GTTCCATGCATCAAAAGTGG+AGG - chr7.3:84611393-84611412 MS.gene97207:intron 45.0%
TAGAGCTGTACTTAGTGCTG+CGG + chr7.3:84611133-84611152 None:intergenic 45.0%
!! ACACCTCCACTTTTGATGCA+TGG + chr7.3:84611399-84611418 None:intergenic 45.0%
!! TATATAATTAATAATGTATT+TGG - chr7.3:84610752-84610771 MS.gene97207:CDS 5.0%
!!! AATATGAATTTTTTTTATAT+TGG + chr7.3:84610871-84610890 None:intergenic 5.0%
!!! TATTGTTTTTATATAATATA+TGG - chr7.3:84611041-84611060 MS.gene97207:CDS 5.0%
AATTATGCAGAGGGGGCTTG+TGG - chr7.3:84611069-84611088 MS.gene97207:CDS 50.0%
GCAATTTGGACAGACCTACG+AGG - chr7.3:84611659-84611678 MS.gene97207:CDS 50.0%
GCACCCTTTATGCACCATTG+AGG + chr7.3:84611210-84611229 None:intergenic 50.0%
GTGGTCTTCGAGTAATCTGG+AGG + chr7.3:84611267-84611286 None:intergenic 50.0%
TCGGTGGTCTTCGAGTAATC+TGG + chr7.3:84611270-84611289 None:intergenic 50.0%
TGGGGACAAAATTGGACTCC+TGG - chr7.3:84611546-84611565 MS.gene97207:intron 50.0%
TTGTCCCCAATTGCGTGACA+TGG + chr7.3:84611535-84611554 None:intergenic 50.0%
ACCAGCTGCGTCACCATAGA+AGG + chr7.3:84610585-84610604 None:intergenic 55.0%
! ACCTTCTATGGTGACGCAGC+TGG - chr7.3:84610581-84610600 MS.gene97207:CDS 55.0%
! TTCTATGGTGACGCAGCTGG+TGG - chr7.3:84610584-84610603 MS.gene97207:CDS 55.0%
GCAGAGGGGGCTTGTGGTTA+TGG - chr7.3:84611075-84611094 MS.gene97207:CDS 60.0%
GGACAGACCTACGAGGCCAA+GGG - chr7.3:84611666-84611685 MS.gene97207:CDS 60.0%
TGGACAGACCTACGAGGCCA+AGG - chr7.3:84611665-84611684 MS.gene97207:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 84610476 84611698 84610476 ID=MS.gene97207
chr7.3 mRNA 84610476 84611698 84610476 ID=MS.gene97207.t1;Parent=MS.gene97207
chr7.3 exon 84611557 84611698 84611557 ID=MS.gene97207.t1.exon1;Parent=MS.gene97207.t1
chr7.3 CDS 84611557 84611698 84611557 ID=cds.MS.gene97207.t1;Parent=MS.gene97207.t1
chr7.3 exon 84610476 84611095 84610476 ID=MS.gene97207.t1.exon2;Parent=MS.gene97207.t1
chr7.3 CDS 84610476 84611095 84610476 ID=cds.MS.gene97207.t1;Parent=MS.gene97207.t1
Gene Sequence

>MS.gene97207

ATGACTATGTCTCATTCTTTTGTTCCTTTTGTCTTTTTCATGATGTTCCTCATACAAGTCATGTCAACTAGCAGCATTGACTTAAAATGGTACGATGCTCATGCAACCTTCTATGGTGACGCAGCTGGTGGTGAAACCATGCGTAAGTTATAAAATTAATCTTCATTTTTCCTTTACATGTTATTTTTTAATGATATATCATACACATTTAATTTAGACTCTTACCATAACAATATACAATCACAAATCTAGTTTTTAAATGAAGATCAGATTACTTATATAATTAATAATGTATTTGGATGTAGATATGATGAAATCAAATATGTATCGCATGCAAGCTTTGCAATGCACATGATTGTCACATTTTTTTTATGAAACCTACATCCGATACACCAATATAAAAAAAATTCATATTCAATAATTTCATTGTTTTTTATACAATATTTAAAAATTGTTTTTTAATGATAGATCAAATGGCATATATATTTCATAATATTTGAAGTAGATATGATGAAATCCCTATGTCCGTACACAAATAAAAAAAAATAATATTCAATTATTATTTTATTGTTTTTATATAATATATGGTATTTAATTATGCAGAGGGGGCTTGTGGTTATGGTGATCTCTTCAAACAAGGATATGGTCTTGCAACCGCAGCACTAAGTACAGCTCTATTCAATAATGGACTTACCTGTGGTGCTTGTTTTCAAATAATTTGTGTCAACGATCCTCAATGGTGCATAAAGGGTGCACACCCTATCACGATAACCGCAACAAATTTTTGTCCTCCAGATTACTCGAAGACCACCGATATTTGGTGTAATCCCCCGCAAAAACACTTCGATTTAAGCTATAAAATGTTCACCTCTATTGCCTATTACAAAGCAGGTATCGTCCCCGTTAAATATCGACGTGTTCCATGCATCAAAAGTGGAGGTGTTAGATTTGAGATCAAAGGAAACCCTTATTTCTTTCTAGCTTTGGTGTACAATGTTGCCAATGCTGGTGATGTTTCTCATGTGAGTATTAAAGGGTCTAAGACTGGTTGGATTTCCATGTCACGCAATTGGGGACAAAATTGGACTCCTGGATCTAATTTGGTAGGACAAGCCTTGTCATTTCAAGTTAGTACAAGTGATGGAAAAACTTTAACGTTTTATTCGGTTGCTCCTTCCAATTGGCAATTTGGACAGACCTACGAGGCCAAGGGAAATTTTTAG
Protein sequence

>MS.gene97207.t1

MTMSHSFVPFVFFMMFLIQVMSTSSIDLKWYDAHATFYGDAAGGETMQGACGYGDLFKQGYGLATAALSTALFNNGLTCGACFQIICVNDPQWCIKGAHPITITATNFCPPDYSKTTDIWCNPPQKHFDLSYKMFTSIAYYKAGIVPVKYRRVPCIKSGGVRFEIKGNPYFFLALVYNVANAGDVSHVSIKGSKTGWISMSRNWGQNWTPGSNLVGQALSFQVSTSDGKTLTFYSVAPSNWQFGQTYEAKGNF