Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98275.t1 | XP_024634086.1 | 88.2 | 305 | 33 | 3 | 20 | 322 | 1 | 304 | 1.10E-148 | 536.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98275.t1 | Q2PS26 | 34.9 | 146 | 79 | 4 | 175 | 309 | 417 | 557 | 1.1e-13 | 79.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98275.t1 | A0A072V0T5 | 89.1 | 266 | 26 | 3 | 59 | 322 | 20 | 284 | 2.5e-131 | 478.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050787 | MS.gene98275 | 0.800736 | 1.25E-48 | -1.69E-46 |
| MS.gene055358 | MS.gene98275 | 0.808553 | 2.93E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98275.t1 | MTR_3g075090 | 89.098 | 266 | 26 | 3 | 59 | 322 | 20 | 284 | 1.34e-172 | 480 |
| MS.gene98275.t1 | MTR_3g100390 | 28.655 | 171 | 111 | 3 | 150 | 309 | 444 | 614 | 2.52e-15 | 77.4 |
| MS.gene98275.t1 | MTR_3g100390 | 28.655 | 171 | 111 | 3 | 150 | 309 | 441 | 611 | 2.59e-15 | 77.4 |
| MS.gene98275.t1 | MTR_5g066230 | 28.090 | 178 | 104 | 6 | 150 | 309 | 233 | 404 | 1.49e-13 | 72.0 |
| MS.gene98275.t1 | MTR_2g009580 | 28.289 | 152 | 94 | 4 | 171 | 309 | 467 | 616 | 1.85e-13 | 71.6 |
| MS.gene98275.t1 | MTR_2g009580 | 28.289 | 152 | 94 | 4 | 171 | 309 | 501 | 650 | 1.92e-13 | 71.6 |
| MS.gene98275.t1 | MTR_8g064470 | 32.450 | 151 | 87 | 3 | 175 | 313 | 380 | 527 | 2.17e-12 | 68.2 |
| MS.gene98275.t1 | MTR_5g066240 | 29.560 | 159 | 84 | 7 | 171 | 309 | 212 | 362 | 4.07e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98275.t1 | AT3G48480 | 48.536 | 239 | 117 | 3 | 85 | 321 | 57 | 291 | 1.24e-77 | 239 |
| MS.gene98275.t1 | AT1G60220 | 34.932 | 146 | 79 | 4 | 175 | 309 | 417 | 557 | 1.11e-15 | 78.2 |
| MS.gene98275.t1 | AT1G09730 | 29.605 | 152 | 92 | 4 | 171 | 309 | 496 | 645 | 8.76e-15 | 75.9 |
| MS.gene98275.t1 | AT1G09730 | 29.605 | 152 | 92 | 4 | 171 | 309 | 464 | 613 | 9.33e-15 | 75.5 |
| MS.gene98275.t1 | AT4G33620 | 28.235 | 170 | 110 | 5 | 150 | 309 | 354 | 521 | 1.29e-13 | 72.0 |
| MS.gene98275.t1 | AT1G10570 | 30.201 | 149 | 89 | 4 | 175 | 313 | 404 | 547 | 7.46e-13 | 69.7 |
| MS.gene98275.t1 | AT1G10570 | 30.201 | 149 | 89 | 4 | 175 | 313 | 405 | 548 | 7.47e-13 | 69.7 |
| MS.gene98275.t1 | AT1G10570 | 31.544 | 149 | 87 | 6 | 175 | 313 | 274 | 417 | 8.71e-13 | 68.9 |
Find 48 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTGATCTTCTGCCATTT+TGG | 0.150947 | 3.1:+61630922 | MS.gene98275:CDS |
| GCTTATGGTTTAGCCTTTAC+AGG | 0.253899 | 3.1:+61630679 | MS.gene98275:CDS |
| TTGCATACATGGACAGCTTA+TGG | 0.286157 | 3.1:+61630664 | MS.gene98275:CDS |
| ATCAGTGGACTTAAGGAATA+AGG | 0.299254 | 3.1:+61629561 | MS.gene98275:intron |
| CTGATGAGCATCAGCGATAT+TGG | 0.304272 | 3.1:-61630330 | None:intergenic |
| ATTTATCTGACAGGAAAGTA+TGG | 0.307770 | 3.1:+61630610 | MS.gene98275:intron |
| TGTTCCTATCAGTGGACTTA+AGG | 0.326413 | 3.1:+61629554 | MS.gene98275:intron |
| TTGACGGGAATAAACATTCT+TGG | 0.328139 | 3.1:-61629611 | None:intergenic |
| ACAAGAGAGGTGATAGAAAT+TGG | 0.332426 | 3.1:+61629655 | MS.gene98275:CDS |
| CAAAGTTCTCGCTAGATCTA+AGG | 0.347758 | 3.1:+61630460 | MS.gene98275:CDS |
| ATCACGTTGTATGTTGTTGC+TGG | 0.352342 | 3.1:+61630969 | MS.gene98275:CDS |
| CTGGTTTACCTTCGAAGATC+TGG | 0.357406 | 3.1:+61631510 | MS.gene98275:CDS |
| TACAAGACATTTATAAAGTC+GGG | 0.360064 | 3.1:+61631143 | MS.gene98275:CDS |
| AAGAGAAAACTTACAAAGTA+AGG | 0.378887 | 3.1:-61631404 | None:intergenic |
| TGACGGGAATAAACATTCTT+GGG | 0.395036 | 3.1:-61629610 | None:intergenic |
| GAGAACTTGCAATCCGCTAC+TGG | 0.418161 | 3.1:+61630946 | MS.gene98275:CDS |
| AAAGCACACTTTCTTATGTC+TGG | 0.419143 | 3.1:-61631030 | None:intergenic |
| TCTGGTTCAAGCTGCTGCCT+TGG | 0.425200 | 3.1:-61631012 | None:intergenic |
| CTTGGGCACAAATCCTGAGC+TGG | 0.440090 | 3.1:-61629593 | None:intergenic |
| CGTGTTTACCATACGACTAT+AGG | 0.441885 | 3.1:-61630777 | None:intergenic |
| ATTGCAAGTTCTCACCAAAA+TGG | 0.442196 | 3.1:-61630936 | None:intergenic |
| CCCTCCATGCTAAAATTCTC+AGG | 0.460075 | 3.1:-61631377 | None:intergenic |
| ATTACCTTGGGCACTAAAAG+TGG | 0.479736 | 3.1:-61631202 | None:intergenic |
| GTGATAGAAATTGGCCCTAA+AGG | 0.480923 | 3.1:+61629664 | MS.gene98275:CDS |
| AAAACAATTTAATGAAATAG+AGG | 0.483376 | 3.1:-61631343 | None:intergenic |
| GAAGAGGTCGTTTGCATACA+TGG | 0.484637 | 3.1:+61630653 | MS.gene98275:CDS |
| GATATAAGATCCTTGGTCTC+TGG | 0.486771 | 3.1:-61631172 | None:intergenic |
| TGTACGAAGCATTCCTGTAA+AGG | 0.487467 | 3.1:-61630692 | None:intergenic |
| GTACAAGACATTTATAAAGT+CGG | 0.498215 | 3.1:+61631142 | MS.gene98275:CDS |
| TTCAAGCTGCTGCCTTGGAT+CGG | 0.507471 | 3.1:-61631007 | None:intergenic |
| AATTTCTATCACCTCTCTTG+TGG | 0.515815 | 3.1:-61629653 | None:intergenic |
| ATCGCAATACTCTCATATGT+TGG | 0.528772 | 3.1:-61628977 | None:intergenic |
| TTACCTTCGAAGATCTGGAT+AGG | 0.538067 | 3.1:+61631515 | MS.gene98275:CDS |
| ACAGAGATAAGGTGCTGAGT+TGG | 0.540557 | 3.1:+61630712 | MS.gene98275:CDS |
| AATTCGAGATATAAGATCCT+TGG | 0.548234 | 3.1:-61631179 | None:intergenic |
| GAATGCTTCGTACAGAGATA+AGG | 0.559251 | 3.1:+61630701 | MS.gene98275:CDS |
| TTTATCTGACAGGAAAGTAT+GGG | 0.570923 | 3.1:+61630611 | MS.gene98275:intron |
| AAAATCAAGAGAACATTCAA+AGG | 0.578542 | 3.1:+61630434 | MS.gene98275:CDS |
| AAACCTATCCAGATCTTCGA+AGG | 0.596730 | 3.1:-61631518 | None:intergenic |
| CAAAATGGCAGAAGATCAGA+AGG | 0.598520 | 3.1:-61630921 | None:intergenic |
| CTCTTGAAATGACCGATCCA+AGG | 0.601300 | 3.1:+61630995 | MS.gene98275:CDS |
| AGAGAAAACTTACAAAGTAA+GGG | 0.608059 | 3.1:-61631403 | None:intergenic |
| GAAAATCGAGACCACAAGAG+AGG | 0.609773 | 3.1:+61629642 | MS.gene98275:CDS |
| ACAAGACATTTATAAAGTCG+GGG | 0.610983 | 3.1:+61631144 | MS.gene98275:CDS |
| ACCAAGACTGTAAAAGTGAG+AGG | 0.627754 | 3.1:+61630362 | MS.gene98275:CDS |
| GGAGAAATTGACTCAAGACA+TGG | 0.634059 | 3.1:+61630305 | MS.gene98275:CDS |
| CAAGACATTTATAAAGTCGG+GGG | 0.675790 | 3.1:+61631145 | MS.gene98275:CDS |
| CATACAACGTGATCCAGTAG+CGG | 0.720222 | 3.1:-61630959 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAGTTATAAGATTAT+AGG | + | chr3.1:61630036-61630055 | MS.gene98275:intron | 10.0% |
| !! | ATTGAATAATTAATCAAAAA+AGG | - | chr3.1:61630811-61630830 | None:intergenic | 10.0% |
| !! | TTGAATAATTAATCAAAAAA+GGG | - | chr3.1:61630810-61630829 | None:intergenic | 10.0% |
| !!! | AATTTTAAAAAATTAAGGTA+CGG | - | chr3.1:61629424-61629443 | None:intergenic | 10.0% |
| !!! | CATCAAATTTTAAAAAATTA+AGG | - | chr3.1:61629429-61629448 | None:intergenic | 10.0% |
| !!! | TAATTAATAATTTTCAAGAA+TGG | - | chr3.1:61631433-61631452 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACTAACCTTT+AGG | - | chr3.1:61629682-61629701 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACTAACCTTTA+GGG | - | chr3.1:61629681-61629700 | None:intergenic | 15.0% |
| !! | AAAACAATTTAATGAAATAG+AGG | - | chr3.1:61631346-61631365 | None:intergenic | 15.0% |
| !! | TTGACATTTAACAAATAAAA+TGG | - | chr3.1:61630852-61630871 | None:intergenic | 15.0% |
| !!! | AACAACAATTTTTGAATTTA+CGG | - | chr3.1:61629193-61629212 | None:intergenic | 15.0% |
| !!! | ATTTTAAAAAATTAAGGTAC+GGG | - | chr3.1:61629423-61629442 | None:intergenic | 15.0% |
| !!! | CTATTTCATTAAATTGTTTT+TGG | + | chr3.1:61631346-61631365 | MS.gene98275:CDS | 15.0% |
| !!! | TAAAAAAAACATTTTCACAA+AGG | + | chr3.1:61630740-61630759 | MS.gene98275:CDS | 15.0% |
| !!! | TTGTAAGTTTTTTTTTTGTT+TGG | + | chr3.1:61629158-61629177 | MS.gene98275:intron | 15.0% |
| !!! | TTTGAAATCATAATTTTGTA+GGG | + | chr3.1:61630888-61630907 | MS.gene98275:intron | 15.0% |
| !! | AAACATTGTTATAAGGTTAT+AGG | + | chr3.1:61629080-61629099 | MS.gene98275:intron | 20.0% |
| !! | ATAAATTGCAGATATAAATG+CGG | - | chr3.1:61629897-61629916 | None:intergenic | 20.0% |
| !! | CATTTAGAAACATTGTTATA+AGG | + | chr3.1:61629073-61629092 | MS.gene98275:intron | 20.0% |
| !! | CTACAAAATTATGATTTCAA+AGG | - | chr3.1:61630889-61630908 | None:intergenic | 20.0% |
| !! | TCCCAATTAAAATAAGTTTA+CGG | + | chr3.1:61630000-61630019 | MS.gene98275:intron | 20.0% |
| !! | TTGTGTAAAGATTCTATATA+AGG | - | chr3.1:61629827-61629846 | None:intergenic | 20.0% |
| !!! | AACCGTAAACTTATTTTAAT+TGG | - | chr3.1:61630005-61630024 | None:intergenic | 20.0% |
| !!! | ACAACAATTTTTGAATTTAC+GGG | - | chr3.1:61629192-61629211 | None:intergenic | 20.0% |
| !!! | ACCGTAAACTTATTTTAATT+GGG | - | chr3.1:61630004-61630023 | None:intergenic | 20.0% |
| !!! | AGAAACTATGTTTTTTTTTG+TGG | + | chr3.1:61629011-61629030 | MS.gene98275:intron | 20.0% |
| !!! | ATAAATGTTATTTATCTGAC+AGG | + | chr3.1:61630601-61630620 | MS.gene98275:intron | 20.0% |
| !!! | ATAACAATGTTTCTAAATGT+GGG | - | chr3.1:61629072-61629091 | None:intergenic | 20.0% |
| !!! | CTTTGAAATCATAATTTTGT+AGG | + | chr3.1:61630887-61630906 | MS.gene98275:intron | 20.0% |
| !!! | TAATGTTTTTACAACAACAA+TGG | + | chr3.1:61629349-61629368 | MS.gene98275:intron | 20.0% |
| !!! | TATAACAATGTTTCTAAATG+TGG | - | chr3.1:61629073-61629092 | None:intergenic | 20.0% |
| !!! | TTATAACTATTTTTTGCAAG+TGG | - | chr3.1:61630030-61630049 | None:intergenic | 20.0% |
| !!! | TTGAAATCATAATTTTGTAG+GGG | + | chr3.1:61630889-61630908 | MS.gene98275:intron | 20.0% |
| !!! | TTTTTACATTTAGTATTCCT+CGG | + | chr3.1:61630399-61630418 | MS.gene98275:CDS | 20.0% |
| ! | AAAAACATAGTTTCTGAATG+TGG | - | chr3.1:61629006-61629025 | None:intergenic | 25.0% |
| ! | AAAATCAAGAGAACATTCAA+AGG | + | chr3.1:61630434-61630453 | MS.gene98275:CDS | 25.0% |
| ! | AAATTTGATGTATTTCGTAC+TGG | + | chr3.1:61629439-61629458 | MS.gene98275:intron | 25.0% |
| ! | AAGAGAAAACTTACAAAGTA+AGG | - | chr3.1:61631407-61631426 | None:intergenic | 25.0% |
| ! | AATTTGATGTATTTCGTACT+GGG | + | chr3.1:61629440-61629459 | MS.gene98275:intron | 25.0% |
| ! | AGAGAAAACTTACAAAGTAA+GGG | - | chr3.1:61631406-61631425 | None:intergenic | 25.0% |
| ! | ATCTGGATATTGATATCTAT+TGG | + | chr3.1:61630217-61630236 | MS.gene98275:intron | 25.0% |
| ! | CAAAAAACACTATAATTGCA+GGG | + | chr3.1:61629307-61629326 | MS.gene98275:intron | 25.0% |
| ! | GTACAAGACATTTATAAAGT+CGG | + | chr3.1:61631142-61631161 | MS.gene98275:CDS | 25.0% |
| ! | TAAATTGCAGATATAAATGC+GGG | - | chr3.1:61629896-61629915 | None:intergenic | 25.0% |
| ! | TACAAGACATTTATAAAGTC+GGG | + | chr3.1:61631143-61631162 | MS.gene98275:CDS | 25.0% |
| ! | TATAAGGTTATAGGTGTTTA+CGG | + | chr3.1:61629089-61629108 | MS.gene98275:intron | 25.0% |
| ! | TCTGGATATTGATATCTATT+GGG | + | chr3.1:61630218-61630237 | MS.gene98275:intron | 25.0% |
| ! | TGGACATGAAAATTGTAAAA+GGG | - | chr3.1:61631234-61631253 | None:intergenic | 25.0% |
| ! | TTGGACATGAAAATTGTAAA+AGG | - | chr3.1:61631235-61631254 | None:intergenic | 25.0% |
| ! | TTTGAGAAGTTCAATAAATC+TGG | + | chr3.1:61630200-61630219 | MS.gene98275:intron | 25.0% |
| !! | ATTTGTTAAATGTCAATCCA+CGG | + | chr3.1:61630856-61630875 | MS.gene98275:intron | 25.0% |
| !! | CAACAATTTTTGAATTTACG+GGG | - | chr3.1:61629191-61629210 | None:intergenic | 25.0% |
| !! | TATTTTCACACAAACAACAA+TGG | - | chr3.1:61629761-61629780 | None:intergenic | 25.0% |
| !! | TCAATGATTTTTGATGGAAA+AGG | + | chr3.1:61630545-61630564 | MS.gene98275:intron | 25.0% |
| !! | TGAAATCATAATTTTGTAGG+GGG | + | chr3.1:61630890-61630909 | MS.gene98275:intron | 25.0% |
| !!! | AAAATGGCTCTTGTTATTAA+AGG | - | chr3.1:61630836-61630855 | None:intergenic | 25.0% |
| !!! | AAATGGCTCTTGTTATTAAA+GGG | - | chr3.1:61630835-61630854 | None:intergenic | 25.0% |
| !!! | ATTGGTTTTCTTTTAACCAT+TGG | - | chr3.1:61631271-61631290 | None:intergenic | 25.0% |
| !!! | GATTTAATTTTGTTTGCCAT+TGG | + | chr3.1:61631466-61631485 | MS.gene98275:intron | 25.0% |
| !!! | TTGTGTTTGCTATTAACATA+GGG | + | chr3.1:61629973-61629992 | MS.gene98275:intron | 25.0% |
| !!! | TTTGTGTTTGCTATTAACAT+AGG | + | chr3.1:61629972-61629991 | MS.gene98275:intron | 25.0% |
| AAATTGCAAATACTCTGACA+GGG | - | chr3.1:61631094-61631113 | None:intergenic | 30.0% | |
| AAATTGCAGATATAAATGCG+GGG | - | chr3.1:61629895-61629914 | None:intergenic | 30.0% | |
| AACAATGGTAGTAATTCACT+TGG | + | chr3.1:61629364-61629383 | MS.gene98275:intron | 30.0% | |
| AATTCGAGATATAAGATCCT+TGG | - | chr3.1:61631182-61631201 | None:intergenic | 30.0% | |
| ACAAGACATTTATAAAGTCG+GGG | + | chr3.1:61631144-61631163 | MS.gene98275:CDS | 30.0% | |
| ACATAATCAACTTCTCTGAT+TGG | - | chr3.1:61630246-61630265 | None:intergenic | 30.0% | |
| ACTTATGAGCAATGATTCAT+AGG | - | chr3.1:61629478-61629497 | None:intergenic | 30.0% | |
| AGAAAACCAATCTATATTGC+AGG | + | chr3.1:61631280-61631299 | MS.gene98275:intron | 30.0% | |
| ATCTAAACAGAAAATCTTGC+AGG | + | chr3.1:61629275-61629294 | MS.gene98275:intron | 30.0% | |
| ATTGCGTCTATAAACATCAT+AGG | + | chr3.1:61629930-61629949 | MS.gene98275:intron | 30.0% | |
| ATTTATCTGACAGGAAAGTA+TGG | + | chr3.1:61630610-61630629 | MS.gene98275:intron | 30.0% | |
| CAATGTAATCAAATCACCAA+TGG | + | chr3.1:61631252-61631271 | MS.gene98275:intron | 30.0% | |
| CCAAAAAACACTATAATTGC+AGG | + | chr3.1:61629306-61629325 | MS.gene98275:intron | 30.0% | |
| CCTTCGTTTATTCAATTTAC+GGG | + | chr3.1:61629730-61629749 | MS.gene98275:intron | 30.0% | |
| CTATATAAGGCACAAAAAGT+AGG | - | chr3.1:61629814-61629833 | None:intergenic | 30.0% | |
| CTGAAAATGAAGATAAAAGC+TGG | - | chr3.1:61631118-61631137 | None:intergenic | 30.0% | |
| GCCTTCGTTTATTCAATTTA+CGG | + | chr3.1:61629729-61629748 | MS.gene98275:intron | 30.0% | |
| GGACATGAAAATTGTAAAAG+GGG | - | chr3.1:61631233-61631252 | None:intergenic | 30.0% | |
| TAAATTGCAAATACTCTGAC+AGG | - | chr3.1:61631095-61631114 | None:intergenic | 30.0% | |
| TACAAATGCTATAATTGCAG+AGG | - | chr3.1:61629143-61629162 | None:intergenic | 30.0% | |
| TCTAAACAGAAAATCTTGCA+GGG | + | chr3.1:61629276-61629295 | MS.gene98275:intron | 30.0% | |
| ! | ATTGAGAAGCTATTTCAAAC+TGG | + | chr3.1:61629502-61629521 | MS.gene98275:intron | 30.0% |
| ! | CACAGTTCAATGATTTTTGA+TGG | + | chr3.1:61630539-61630558 | MS.gene98275:intron | 30.0% |
| ! | CATTGGTGATTTGATTACAT+TGG | - | chr3.1:61631254-61631273 | None:intergenic | 30.0% |
| ! | CGATTTTCTTCTTTCTTTGA+CGG | - | chr3.1:61629630-61629649 | None:intergenic | 30.0% |
| ! | GATTTTCTTCTTTCTTTGAC+GGG | - | chr3.1:61629629-61629648 | None:intergenic | 30.0% |
| ! | TTTATCTGACAGGAAAGTAT+GGG | + | chr3.1:61630611-61630630 | MS.gene98275:intron | 30.0% |
| ! | TTTTTGTTCCTATAGTCGTA+TGG | + | chr3.1:61630769-61630788 | MS.gene98275:CDS | 30.0% |
| !! | AATTTTGTTTGCCATTGGTA+TGG | + | chr3.1:61631471-61631490 | MS.gene98275:intron | 30.0% |
| !!! | CCTGCAATTATAGTGTTTTT+TGG | - | chr3.1:61629309-61629328 | None:intergenic | 30.0% |
| AAAGCACACTTTCTTATGTC+TGG | - | chr3.1:61631033-61631052 | None:intergenic | 35.0% | |
| AACTTCTCAAAAAACACTCG+TGG | - | chr3.1:61630191-61630210 | None:intergenic | 35.0% | |
| AATGATTCATAGGTACGTGT+AGG | - | chr3.1:61629468-61629487 | None:intergenic | 35.0% | |
| AATTTCTATCACCTCTCTTG+TGG | - | chr3.1:61629656-61629675 | None:intergenic | 35.0% | |
| ACAAGAGAGGTGATAGAAAT+TGG | + | chr3.1:61629655-61629674 | MS.gene98275:CDS | 35.0% | |
| ATCGCAATACTCTCATATGT+TGG | - | chr3.1:61628980-61628999 | None:intergenic | 35.0% | |
| ATTGCAAGTTCTCACCAAAA+TGG | - | chr3.1:61630939-61630958 | None:intergenic | 35.0% | |
| ATTTCAAAGGATAAACTCCG+TGG | - | chr3.1:61630876-61630895 | None:intergenic | 35.0% | |
| CAAGACATTTATAAAGTCGG+GGG | + | chr3.1:61631145-61631164 | MS.gene98275:CDS | 35.0% | |
| CCCGTAAATTGAATAAACGA+AGG | - | chr3.1:61629733-61629752 | None:intergenic | 35.0% | |
| CTAAACAGAAAATCTTGCAG+GGG | + | chr3.1:61629277-61629296 | MS.gene98275:intron | 35.0% | |
| GGTGTTTACGGAAAGTTAAA+AGG | + | chr3.1:61629101-61629120 | MS.gene98275:intron | 35.0% | |
| TATTCCTTAAGTCCACTGAT+AGG | - | chr3.1:61629561-61629580 | None:intergenic | 35.0% | |
| TGACGGGAATAAACATTCTT+GGG | - | chr3.1:61629613-61629632 | None:intergenic | 35.0% | |
| TTGACGGGAATAAACATTCT+TGG | - | chr3.1:61629614-61629633 | None:intergenic | 35.0% | |
| ! | AAAAAGACGACACTGATTGT+GGG | + | chr3.1:61631312-61631331 | MS.gene98275:CDS | 35.0% |
| ! | ATCAGTGGACTTAAGGAATA+AGG | + | chr3.1:61629561-61629580 | MS.gene98275:intron | 35.0% |
| ! | GTTCTCTTGATTTTTGTTCG+TGG | - | chr3.1:61630428-61630447 | None:intergenic | 35.0% |
| !! | GGATAGGTTTTGTGAGAATT+TGG | + | chr3.1:61631531-61631550 | MS.gene98275:CDS | 35.0% |
| !! | GTTTTTCAGAAGATAGGAAG+AGG | + | chr3.1:61630637-61630656 | MS.gene98275:CDS | 35.0% |
| AAAAGGGGTCGTTATTACCT+TGG | - | chr3.1:61631218-61631237 | None:intergenic | 40.0% | |
| AAACCTATCCAGATCTTCGA+AGG | - | chr3.1:61631521-61631540 | None:intergenic | 40.0% | |
| AAAGGGGTCGTTATTACCTT+GGG | - | chr3.1:61631217-61631236 | None:intergenic | 40.0% | |
| AAGGAAAGAAAAACCAGCTC+AGG | + | chr3.1:61629580-61629599 | MS.gene98275:CDS | 40.0% | |
| ACCAAGACTGTAAAAGTGAG+AGG | + | chr3.1:61630362-61630381 | MS.gene98275:CDS | 40.0% | |
| AGTCTCTATAAGCTGATGTC+AGG | - | chr3.1:61629222-61629241 | None:intergenic | 40.0% | |
| ATCACGTTGTATGTTGTTGC+TGG | + | chr3.1:61630969-61630988 | MS.gene98275:CDS | 40.0% | |
| ATTACCTTGGGCACTAAAAG+TGG | - | chr3.1:61631205-61631224 | None:intergenic | 40.0% | |
| CAAAATGGCAGAAGATCAGA+AGG | - | chr3.1:61630924-61630943 | None:intergenic | 40.0% | |
| CAAAGTTCTCGCTAGATCTA+AGG | + | chr3.1:61630460-61630479 | MS.gene98275:CDS | 40.0% | |
| CGTGTTTACCATACGACTAT+AGG | - | chr3.1:61630780-61630799 | None:intergenic | 40.0% | |
| GAATGCTTCGTACAGAGATA+AGG | + | chr3.1:61630701-61630720 | MS.gene98275:CDS | 40.0% | |
| GATATAAGATCCTTGGTCTC+TGG | - | chr3.1:61631175-61631194 | None:intergenic | 40.0% | |
| GTCTCTATAAGCTGATGTCA+GGG | - | chr3.1:61629221-61629240 | None:intergenic | 40.0% | |
| GTGATAGAAATTGGCCCTAA+AGG | + | chr3.1:61629664-61629683 | MS.gene98275:CDS | 40.0% | |
| TGGTGCAGATGAAAAAAGAC+TGG | + | chr3.1:61631491-61631510 | MS.gene98275:intron | 40.0% | |
| TTACCTTCGAAGATCTGGAT+AGG | + | chr3.1:61631515-61631534 | MS.gene98275:CDS | 40.0% | |
| TTGCATACATGGACAGCTTA+TGG | + | chr3.1:61630664-61630683 | MS.gene98275:CDS | 40.0% | |
| TTTCATCTGCACCATACCAA+TGG | - | chr3.1:61631485-61631504 | None:intergenic | 40.0% | |
| ! | CAAAAAGACGACACTGATTG+TGG | + | chr3.1:61631311-61631330 | MS.gene98275:CDS | 40.0% |
| ! | GCAAGAGTGTATCATGTATG+AGG | - | chr3.1:61629711-61629730 | None:intergenic | 40.0% |
| ! | GCTTATGGTTTAGCCTTTAC+AGG | + | chr3.1:61630679-61630698 | MS.gene98275:CDS | 40.0% |
| ! | GGAGAAATTGACTCAAGACA+TGG | + | chr3.1:61630305-61630324 | MS.gene98275:CDS | 40.0% |
| ! | TCAGTGTCGTCTTTTTGTTG+TGG | - | chr3.1:61631308-61631327 | None:intergenic | 40.0% |
| ! | TGTACGAAGCATTCCTGTAA+AGG | - | chr3.1:61630695-61630714 | None:intergenic | 40.0% |
| ! | TGTTCCTATCAGTGGACTTA+AGG | + | chr3.1:61629554-61629573 | MS.gene98275:intron | 40.0% |
| !! | AATTCCACTTTTAGTGCCCA+AGG | + | chr3.1:61631198-61631217 | MS.gene98275:CDS | 40.0% |
| !! | ACCTGAGAATTTTAGCATGG+AGG | + | chr3.1:61631376-61631395 | MS.gene98275:CDS | 40.0% |
| !! | ATCAGTCGATTTTGCGAATC+AGG | + | chr3.1:61630280-61630299 | MS.gene98275:intron | 40.0% |
| !! | CCTGAGAATTTTAGCATGGA+GGG | + | chr3.1:61631377-61631396 | MS.gene98275:CDS | 40.0% |
| !! | CTGAGAATTTTAGCATGGAG+GGG | + | chr3.1:61631378-61631397 | MS.gene98275:CDS | 40.0% |
| !! | CTTCTGATCTTCTGCCATTT+TGG | + | chr3.1:61630922-61630941 | MS.gene98275:CDS | 40.0% |
| !! | GGGAGAGTTTTTCAGAAGAT+AGG | + | chr3.1:61630631-61630650 | MS.gene98275:CDS | 40.0% |
| !! | TCCTCTCACTTTTACAGTCT+TGG | - | chr3.1:61630366-61630385 | None:intergenic | 40.0% |
| ACATTTATAAAGTCGGGGGC+AGG | + | chr3.1:61631149-61631168 | MS.gene98275:CDS | 45.0% | |
| CATACAACGTGATCCAGTAG+CGG | - | chr3.1:61630962-61630981 | None:intergenic | 45.0% | |
| CCACTGATAGGAACAATGAC+AGG | - | chr3.1:61629549-61629568 | None:intergenic | 45.0% | |
| CCCTCCATGCTAAAATTCTC+AGG | - | chr3.1:61631380-61631399 | None:intergenic | 45.0% | |
| CCTGTCATTGTTCCTATCAG+TGG | + | chr3.1:61629546-61629565 | MS.gene98275:intron | 45.0% | |
| CTCTTGAAATGACCGATCCA+AGG | + | chr3.1:61630995-61631014 | MS.gene98275:CDS | 45.0% | |
| CTGATGAGCATCAGCGATAT+TGG | - | chr3.1:61630333-61630352 | None:intergenic | 45.0% | |
| CTGGTTTACCTTCGAAGATC+TGG | + | chr3.1:61631510-61631529 | MS.gene98275:CDS | 45.0% | |
| GAAAATCGAGACCACAAGAG+AGG | + | chr3.1:61629642-61629661 | MS.gene98275:CDS | 45.0% | |
| GAAGAGGTCGTTTGCATACA+TGG | + | chr3.1:61630653-61630672 | MS.gene98275:CDS | 45.0% | |
| GTGGCACCTGCAATATAGAT+TGG | - | chr3.1:61631289-61631308 | None:intergenic | 45.0% | |
| TGTGGTATCGTTCCTACCAA+CGG | + | chr3.1:61629029-61629048 | MS.gene98275:intron | 45.0% | |
| !! | ACAGAGATAAGGTGCTGAGT+TGG | + | chr3.1:61630712-61630731 | MS.gene98275:CDS | 45.0% |
| !! | CATAATTTTGTAGGGGGCAC+TGG | + | chr3.1:61630896-61630915 | MS.gene98275:intron | 45.0% |
| !! | CGCACCTGAGAATTTTAGCA+TGG | + | chr3.1:61631373-61631392 | MS.gene98275:CDS | 45.0% |
| !! | GTCGATTTTGCGAATCAGGA+AGG | + | chr3.1:61630284-61630303 | MS.gene98275:intron | 45.0% |
| GAGAACTTGCAATCCGCTAC+TGG | + | chr3.1:61630946-61630965 | MS.gene98275:CDS | 50.0% | |
| TTCAAGCTGCTGCCTTGGAT+CGG | - | chr3.1:61631010-61631029 | None:intergenic | 50.0% | |
| ! | ATTTTTGTTCGTGGTCGCCG+AGG | - | chr3.1:61630419-61630438 | None:intergenic | 50.0% |
| CCAACGGAGCTAAGCTCACA+AGG | + | chr3.1:61629045-61629064 | MS.gene98275:intron | 55.0% | |
| CCTTGTGAGCTTAGCTCCGT+TGG | - | chr3.1:61629048-61629067 | None:intergenic | 55.0% | |
| CTTGGGCACAAATCCTGAGC+TGG | - | chr3.1:61629596-61629615 | None:intergenic | 55.0% | |
| GTGAGCTTAGCTCCGTTGGT+AGG | - | chr3.1:61629044-61629063 | None:intergenic | 55.0% | |
| ! | TCTGGTTCAAGCTGCTGCCT+TGG | - | chr3.1:61631015-61631034 | None:intergenic | 55.0% |
| CGGGGGCAGGCCAGAGACCA+AGG | + | chr3.1:61631162-61631181 | MS.gene98275:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 61628962 | 61631561 | 61628962 | ID=MS.gene98275 |
| chr3.1 | mRNA | 61628962 | 61631561 | 61628962 | ID=MS.gene98275.t1;Parent=MS.gene98275 |
| chr3.1 | exon | 61628962 | 61629019 | 61628962 | ID=MS.gene98275.t1.exon1;Parent=MS.gene98275.t1 |
| chr3.1 | CDS | 61628962 | 61629019 | 61628962 | ID=cds.MS.gene98275.t1;Parent=MS.gene98275.t1 |
| chr3.1 | exon | 61629566 | 61629685 | 61629566 | ID=MS.gene98275.t1.exon2;Parent=MS.gene98275.t1 |
| chr3.1 | CDS | 61629566 | 61629685 | 61629566 | ID=cds.MS.gene98275.t1;Parent=MS.gene98275.t1 |
| chr3.1 | exon | 61630285 | 61630519 | 61630285 | ID=MS.gene98275.t1.exon3;Parent=MS.gene98275.t1 |
| chr3.1 | CDS | 61630285 | 61630519 | 61630285 | ID=cds.MS.gene98275.t1;Parent=MS.gene98275.t1 |
| chr3.1 | exon | 61630623 | 61630790 | 61630623 | ID=MS.gene98275.t1.exon4;Parent=MS.gene98275.t1 |
| chr3.1 | CDS | 61630623 | 61630790 | 61630623 | ID=cds.MS.gene98275.t1;Parent=MS.gene98275.t1 |
| chr3.1 | exon | 61630909 | 61631043 | 61630909 | ID=MS.gene98275.t1.exon5;Parent=MS.gene98275.t1 |
| chr3.1 | CDS | 61630909 | 61631043 | 61630909 | ID=cds.MS.gene98275.t1;Parent=MS.gene98275.t1 |
| chr3.1 | exon | 61631138 | 61631219 | 61631138 | ID=MS.gene98275.t1.exon6;Parent=MS.gene98275.t1 |
| chr3.1 | CDS | 61631138 | 61631219 | 61631138 | ID=cds.MS.gene98275.t1;Parent=MS.gene98275.t1 |
| chr3.1 | exon | 61631302 | 61631412 | 61631302 | ID=MS.gene98275.t1.exon7;Parent=MS.gene98275.t1 |
| chr3.1 | CDS | 61631302 | 61631412 | 61631302 | ID=cds.MS.gene98275.t1;Parent=MS.gene98275.t1 |
| chr3.1 | exon | 61631499 | 61631561 | 61631499 | ID=MS.gene98275.t1.exon8;Parent=MS.gene98275.t1 |
| chr3.1 | CDS | 61631499 | 61631561 | 61631499 | ID=cds.MS.gene98275.t1;Parent=MS.gene98275.t1 |
| Gene Sequence |
| Protein sequence |
