Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98525.t1 | XP_003616827.2 | 96.7 | 423 | 14 | 0 | 1 | 423 | 72 | 494 | 2.60E-232 | 814.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98525.t1 | Q9MAU5 | 58.7 | 416 | 170 | 2 | 2 | 417 | 70 | 483 | 3.3e-143 | 509.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98525.t1 | G7K7F5 | 96.7 | 423 | 14 | 0 | 1 | 423 | 72 | 494 | 1.9e-232 | 814.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050226 | MS.gene98525 | 0.800604 | 1.33E-48 | -1.69E-46 |
| MS.gene050227 | MS.gene98525 | 0.80066 | 1.30E-48 | -1.69E-46 |
| MS.gene050762 | MS.gene98525 | 0.810919 | 9.07E-51 | -1.69E-46 |
| MS.gene050763 | MS.gene98525 | 0.810165 | 1.32E-50 | -1.69E-46 |
| MS.gene051210 | MS.gene98525 | 0.814218 | 1.72E-51 | -1.69E-46 |
| MS.gene053381 | MS.gene98525 | 0.801946 | 7.08E-49 | -1.69E-46 |
| MS.gene060637 | MS.gene98525 | 0.825317 | 5.01E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98525.t1 | MTR_5g084690 | 96.690 | 423 | 14 | 0 | 1 | 423 | 72 | 494 | 0.0 | 833 |
| MS.gene98525.t1 | MTR_5g093980 | 47.754 | 423 | 217 | 3 | 1 | 423 | 67 | 485 | 1.04e-140 | 411 |
| MS.gene98525.t1 | MTR_3g054360 | 44.656 | 421 | 230 | 3 | 1 | 421 | 69 | 486 | 3.86e-122 | 363 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98525.t1 | AT1G04970 | 58.373 | 418 | 172 | 2 | 1 | 418 | 69 | 484 | 0.0 | 516 |
| MS.gene98525.t1 | AT1G04970 | 58.857 | 350 | 143 | 1 | 69 | 418 | 10 | 358 | 2.04e-153 | 439 |
| MS.gene98525.t1 | AT1G04970 | 58.857 | 350 | 143 | 1 | 69 | 418 | 10 | 358 | 2.04e-153 | 439 |
| MS.gene98525.t1 | AT3G20270 | 37.073 | 410 | 251 | 2 | 1 | 410 | 107 | 509 | 4.27e-101 | 310 |
| MS.gene98525.t1 | AT3G20270 | 37.073 | 410 | 251 | 2 | 1 | 410 | 107 | 509 | 4.27e-101 | 310 |
| MS.gene98525.t1 | AT3G20270 | 37.073 | 410 | 251 | 2 | 1 | 410 | 107 | 509 | 4.27e-101 | 310 |
| MS.gene98525.t1 | AT3G20270 | 37.073 | 410 | 251 | 2 | 1 | 410 | 314 | 716 | 4.66e-98 | 308 |
| MS.gene98525.t1 | AT3G20270 | 37.073 | 410 | 251 | 2 | 1 | 410 | 314 | 716 | 4.66e-98 | 308 |
| MS.gene98525.t1 | AT3G20270 | 37.047 | 359 | 219 | 2 | 1 | 359 | 107 | 458 | 1.33e-84 | 266 |
Find 82 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGGAAGTTGAACTTAAAT+TGG | 0.156959 | 5.2:+72246225 | MS.gene98525:CDS |
| TAAAGATATTTCAATAAAAT+TGG | 0.163549 | 5.2:+72246306 | MS.gene98525:CDS |
| TTCAAGTTCATTTCATGATT+TGG | 0.181512 | 5.2:-72247126 | None:intergenic |
| GATGAATTTGTGCATAAAAT+TGG | 0.186810 | 5.2:-72246743 | None:intergenic |
| TCAGGTTTGGTCAAAATAAA+TGG | 0.203844 | 5.2:+72247890 | MS.gene98525:CDS |
| GGAGAACCATGAAGGATATT+TGG | 0.213932 | 5.2:+72246252 | MS.gene98525:CDS |
| TCTACGAATGTTCCTTATTC+AGG | 0.249285 | 5.2:+72247982 | MS.gene98525:CDS |
| CTTATGAGTATAGTACTATT+TGG | 0.250385 | 5.2:+72245506 | MS.gene98525:CDS |
| AATACCTTCTCCAAGTTTCT+TGG | 0.259965 | 5.2:-72246528 | None:intergenic |
| TCAAGTTCATTTCATGATTT+GGG | 0.290277 | 5.2:-72247125 | None:intergenic |
| AACATAAACCTACCTGAATA+AGG | 0.302925 | 5.2:-72247994 | None:intergenic |
| CCACAGATGATTCAAGCTTC+AGG | 0.313074 | 5.2:+72247872 | MS.gene98525:intron |
| TAATGTGAAACCATGAATAA+TGG | 0.333629 | 5.2:-72248648 | None:intergenic |
| CTAAAATGTGCATTTGCATA+TGG | 0.334863 | 5.2:-72248608 | None:intergenic |
| TCGATAATCGTCCACATAAC+TGG | 0.335865 | 5.2:-72248572 | None:intergenic |
| CGAGATCCAAATATCCTTCA+TGG | 0.340971 | 5.2:-72246258 | None:intergenic |
| GAGTCTTCCACAGGAGGTTC+CGG | 0.372201 | 5.2:+72246574 | MS.gene98525:CDS |
| CCTGTTAAGGTTTCTGATCA+AGG | 0.372849 | 5.2:+72245535 | MS.gene98525:CDS |
| ATATTTGGATCTCGAACTTA+AGG | 0.385470 | 5.2:+72246267 | MS.gene98525:CDS |
| TATTTGGTTTGGTCCTGTTA+AGG | 0.393838 | 5.2:+72245522 | MS.gene98525:CDS |
| TTACCCTTGCCCATTATTCA+TGG | 0.394754 | 5.2:+72248638 | MS.gene98525:CDS |
| ATGGAAGTTGAACTTAAATT+GGG | 0.400019 | 5.2:+72246226 | MS.gene98525:CDS |
| ACCATCAGATTGGGTGACTT+TGG | 0.403675 | 5.2:+72247929 | MS.gene98525:CDS |
| TTCAGGCAAAATTTATGCAT+TGG | 0.412816 | 5.2:+72247022 | MS.gene98525:intron |
| AGTTGAACTTAAATTGGGAT+TGG | 0.424622 | 5.2:+72246231 | MS.gene98525:CDS |
| TCAAGGTTCAGCACAAGTTC+AGG | 0.426430 | 5.2:+72245552 | MS.gene98525:CDS |
| CCTTGATCAGAAACCTTAAC+AGG | 0.427898 | 5.2:-72245535 | None:intergenic |
| GAGTTCTTGTGGCAGAGGTT+AGG | 0.432697 | 5.2:-72246713 | None:intergenic |
| TTACTAAGTGAGTCGTCGAT+TGG | 0.436494 | 5.2:+72246641 | MS.gene98525:CDS |
| ATCTCAATCCCACTCTCATC+AGG | 0.438643 | 5.2:-72245442 | None:intergenic |
| TTGTGGCAGAGGTTAGGAAT+AGG | 0.440618 | 5.2:-72246707 | None:intergenic |
| GATGATTCAAGCTTCAGGTT+TGG | 0.443327 | 5.2:+72247877 | MS.gene98525:intron |
| GAGTATAGTACTATTTGGTT+TGG | 0.446381 | 5.2:+72245511 | MS.gene98525:CDS |
| TTATTATTCCTCAGTTGTAC+AGG | 0.451409 | 5.2:+72247097 | MS.gene98525:CDS |
| GTTGTAATTTGAGCTTGGAT+TGG | 0.452126 | 5.2:+72245482 | MS.gene98525:CDS |
| ACTTTGGAATGTCATTGAAA+TGG | 0.456473 | 5.2:+72247945 | MS.gene98525:CDS |
| AATGTGAAACCATGAATAAT+GGG | 0.463583 | 5.2:-72248647 | None:intergenic |
| AATGCTATCACCAAGAAACT+TGG | 0.463924 | 5.2:+72246518 | MS.gene98525:CDS |
| TACTAAGTGAGTCGTCGATT+GGG | 0.466821 | 5.2:+72246642 | MS.gene98525:CDS |
| TTTGTCATCTCCTCCGGTTG+TGG | 0.473852 | 5.2:+72247155 | MS.gene98525:CDS |
| GGTTAGTTGTAATTTGAGCT+TGG | 0.473939 | 5.2:+72245477 | MS.gene98525:CDS |
| TATATCTTTGTCATCTCCTC+CGG | 0.474075 | 5.2:+72247149 | MS.gene98525:CDS |
| TGATCTGAAATCTCCACAAC+CGG | 0.477470 | 5.2:-72247168 | None:intergenic |
| ACCAGTAGCATGCATCTCAT+TGG | 0.482084 | 5.2:+72247254 | MS.gene98525:CDS |
| GGTGCATCTTGGCTTTATCA+AGG | 0.484778 | 5.2:+72246334 | MS.gene98525:CDS |
| AACGAAGAGTGATCATCAAC+CGG | 0.488516 | 5.2:-72246593 | None:intergenic |
| CTCGTAGGTACCATCAGATT+GGG | 0.490558 | 5.2:+72247920 | MS.gene98525:CDS |
| CCTCGTAGGTACCATCAGAT+TGG | 0.492012 | 5.2:+72247919 | MS.gene98525:CDS |
| GGTACAAGAATTCCAATGTT+GGG | 0.495246 | 5.2:+72245352 | None:intergenic |
| AATTGGACGGAGGTGCATCT+TGG | 0.496077 | 5.2:+72246323 | MS.gene98525:CDS |
| ACCAATGAGATGCATGCTAC+TGG | 0.496446 | 5.2:-72247255 | None:intergenic |
| TCGATTGGGTTTGAAACCAA+TGG | 0.511594 | 5.2:+72246656 | MS.gene98525:CDS |
| TCATTGAAATGGAGCAGCAT+TGG | 0.513299 | 5.2:+72247956 | MS.gene98525:CDS |
| AAAATTTATGCATTGGATTG+TGG | 0.529740 | 5.2:+72247029 | MS.gene98525:CDS |
| CAATCTCTATTGAACACTGC+AGG | 0.538757 | 5.2:+72247066 | MS.gene98525:CDS |
| GATATTTCAATAAAATTGGA+CGG | 0.542732 | 5.2:+72246310 | MS.gene98525:CDS |
| TTGTTAAGCCTGATGAGAGT+GGG | 0.545292 | 5.2:+72245434 | MS.gene98525:CDS |
| GTGTTCAATAGAGATTGATC+TGG | 0.560509 | 5.2:-72247060 | None:intergenic |
| GGCAGAGGTTAGGAATAGGT+AGG | 0.566366 | 5.2:-72246703 | None:intergenic |
| GAGATTTCAGATCAGAAAGC+AGG | 0.576449 | 5.2:+72247177 | MS.gene98525:CDS |
| ATTGTTAAGCCTGATGAGAG+TGG | 0.577115 | 5.2:+72245433 | MS.gene98525:CDS |
| AACAGCCTCGTCTAAAGAGA+TGG | 0.579922 | 5.2:-72246777 | None:intergenic |
| GTATTTGAAGAGTCTTCCAC+AGG | 0.580971 | 5.2:+72246565 | MS.gene98525:CDS |
| GCAGAGGTTAGGAATAGGTA+GGG | 0.583860 | 5.2:-72246702 | None:intergenic |
| GTGCATCTTGGCTTTATCAA+GGG | 0.588060 | 5.2:+72246335 | MS.gene98525:CDS |
| CTCTATTGAACACTGCAGGA+TGG | 0.592149 | 5.2:+72247070 | MS.gene98525:CDS |
| TTTGAAGAGTCTTCCACAGG+AGG | 0.592700 | 5.2:+72246568 | MS.gene98525:CDS |
| TCCAAAGTCACCCAATCTGA+TGG | 0.597147 | 5.2:-72247930 | None:intergenic |
| TCATCAACCGGAACCTCCTG+TGG | 0.597333 | 5.2:-72246581 | None:intergenic |
| GAAACCATGAATAATGGGCA+AGG | 0.600598 | 5.2:-72248642 | None:intergenic |
| TTGGGATTGGAGAACCATGA+AGG | 0.601930 | 5.2:+72246244 | MS.gene98525:CDS |
| AAAACTTACATCATAATACA+AGG | 0.616369 | 5.2:-72246816 | None:intergenic |
| ATAAATGGAAATAACCTCGT+AGG | 0.618799 | 5.2:+72247905 | MS.gene98525:CDS |
| AAGTAAACACTACCCAACAT+TGG | 0.621139 | 5.2:-72245364 | None:intergenic |
| AAACCATGAATAATGGGCAA+GGG | 0.623857 | 5.2:-72248641 | None:intergenic |
| ATCACCAAGAAACTTGGAGA+AGG | 0.623958 | 5.2:+72246524 | MS.gene98525:CDS |
| GGGTATTTCCTGTACAACTG+AGG | 0.624337 | 5.2:-72247105 | None:intergenic |
| AACTTGGAGAAGGTATTACA+AGG | 0.633422 | 5.2:+72246534 | MS.gene98525:CDS |
| TCTGAAATCTCCACAACCGG+AGG | 0.673824 | 5.2:-72247165 | None:intergenic |
| GCTAGCCATCTCTTTAGACG+AGG | 0.696866 | 5.2:+72246772 | MS.gene98525:CDS |
| ATTTCAATAAAATTGGACGG+AGG | 0.711207 | 5.2:+72246313 | MS.gene98525:CDS |
| CCAATCTGATGGTACCTACG+AGG | 0.737067 | 5.2:-72247919 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGATATTTCAATAAAAT+TGG | + | chr5.2:72246306-72246325 | MS.gene98525:CDS | 10.0% |
| !!! | AAATATTTTTTTTTCATTGT+TGG | - | chr5.2:72248053-72248072 | None:intergenic | 10.0% |
| !! | TAAAAAGATAGCTTATATAT+AGG | - | chr5.2:72245736-72245755 | None:intergenic | 15.0% |
| !! | TGATTAAAATGTAATGAAAA+GGG | + | chr5.2:72246167-72246186 | MS.gene98525:intron | 15.0% |
| !! | TTGATTAAAATGTAATGAAA+AGG | + | chr5.2:72246166-72246185 | MS.gene98525:intron | 15.0% |
| !! | TTGATTATGATGAATTATAT+TGG | + | chr5.2:72247396-72247415 | MS.gene98525:intron | 15.0% |
| !!! | AATTTTATTTACTATGTCAT+TGG | + | chr5.2:72246964-72246983 | MS.gene98525:intron | 15.0% |
| !!! | TGGTTAATTTAATTTATAGA+TGG | + | chr5.2:72246083-72246102 | MS.gene98525:intron | 15.0% |
| !! | AAAAACATACACATAGATTA+TGG | - | chr5.2:72247315-72247334 | None:intergenic | 20.0% |
| !! | AAAACTTACATCATAATACA+AGG | - | chr5.2:72246819-72246838 | None:intergenic | 20.0% |
| !! | AATAAAAAACACAAAGGAAA+AGG | - | chr5.2:72245593-72245612 | None:intergenic | 20.0% |
| !! | ACATAAATCATTATAAGTTC+AGG | + | chr5.2:72248083-72248102 | MS.gene98525:intron | 20.0% |
| !! | AGTTTAAAAGATTAGATGTT+TGG | + | chr5.2:72247648-72247667 | MS.gene98525:intron | 20.0% |
| !! | ATATATTCAGAGAATAAGAA+TGG | - | chr5.2:72247345-72247364 | None:intergenic | 20.0% |
| !! | ATTCTCTGAATATATTACTT+TGG | + | chr5.2:72247350-72247369 | MS.gene98525:intron | 20.0% |
| !! | GATATTTCAATAAAATTGGA+CGG | + | chr5.2:72246310-72246329 | MS.gene98525:CDS | 20.0% |
| !! | TCATAATCAAAATAACATTG+AGG | - | chr5.2:72247386-72247405 | None:intergenic | 20.0% |
| !! | TCATATTGATATTTAAACAC+AGG | - | chr5.2:72248130-72248149 | None:intergenic | 20.0% |
| !! | TTATGATGAATTATATTGGT+TGG | + | chr5.2:72247400-72247419 | MS.gene98525:intron | 20.0% |
| !!! | AACATCTAATCTTTTAAACT+CGG | - | chr5.2:72247648-72247667 | None:intergenic | 20.0% |
| !!! | ATCATTAAATAAGTTGACAT+TGG | - | chr5.2:72246040-72246059 | None:intergenic | 20.0% |
| !!! | TCCTTTGTGTTTTTTATTTT+GGG | + | chr5.2:72245595-72245614 | MS.gene98525:intron | 20.0% |
| !!! | TCTTTTTATAAATAAGCCAT+TGG | - | chr5.2:72246675-72246694 | None:intergenic | 20.0% |
| !!! | TTCCTTTGTGTTTTTTATTT+TGG | + | chr5.2:72245594-72245613 | MS.gene98525:intron | 20.0% |
| ! | AAAATTTATGCATTGGATTG+TGG | + | chr5.2:72247029-72247048 | MS.gene98525:CDS | 25.0% |
| ! | AAATGAGCTAGAATCTAATA+TGG | - | chr5.2:72246375-72246394 | None:intergenic | 25.0% |
| ! | AAATTTCTTTATGCTTTCAG+TGG | + | chr5.2:72248179-72248198 | MS.gene98525:intron | 25.0% |
| ! | AATAAGTTAAAAACAGCTTC+TGG | - | chr5.2:72248320-72248339 | None:intergenic | 25.0% |
| ! | AATGTGAAACCATGAATAAT+GGG | - | chr5.2:72248650-72248669 | None:intergenic | 25.0% |
| ! | ACCCAAAATAAAAAACACAA+AGG | - | chr5.2:72245599-72245618 | None:intergenic | 25.0% |
| ! | AGAAATGACAACTTATTGTA+AGG | - | chr5.2:72247819-72247838 | None:intergenic | 25.0% |
| ! | ATGGAAGTTGAACTTAAATT+GGG | + | chr5.2:72246226-72246245 | MS.gene98525:CDS | 25.0% |
| ! | CTTATGAGTATAGTACTATT+TGG | + | chr5.2:72245506-72245525 | MS.gene98525:CDS | 25.0% |
| ! | GATGAATTTGTGCATAAAAT+TGG | - | chr5.2:72246746-72246765 | None:intergenic | 25.0% |
| ! | GTGAAGAAGATTTAATGATT+TGG | + | chr5.2:72245918-72245937 | MS.gene98525:intron | 25.0% |
| ! | TAATGTGAAACCATGAATAA+TGG | - | chr5.2:72248651-72248670 | None:intergenic | 25.0% |
| ! | TATGACACATTTATTGATCT+GGG | + | chr5.2:72245874-72245893 | MS.gene98525:intron | 25.0% |
| ! | TCAAGTTCATTTCATGATTT+GGG | - | chr5.2:72247128-72247147 | None:intergenic | 25.0% |
| ! | TTATTCACAATAGTCATGTT+TGG | - | chr5.2:72248494-72248513 | None:intergenic | 25.0% |
| ! | TTGTATGTATATGTGTAGAA+TGG | + | chr5.2:72245619-72245638 | MS.gene98525:intron | 25.0% |
| !! | TAAATAAGTTGACATTGGTA+GGG | - | chr5.2:72246035-72246054 | None:intergenic | 25.0% |
| !! | TTAAATAAGTTGACATTGGT+AGG | - | chr5.2:72246036-72246055 | None:intergenic | 25.0% |
| !! | TTCAAGTTCATTTCATGATT+TGG | - | chr5.2:72247129-72247148 | None:intergenic | 25.0% |
| !!! | AATTTGATAAGTGCTGATTT+TGG | + | chr5.2:72246190-72246209 | MS.gene98525:intron | 25.0% |
| !!! | ATAAGTTGAAAAGTGCTTTA+TGG | + | chr5.2:72245830-72245849 | MS.gene98525:intron | 25.0% |
| !!! | CAAATGCACATTTTAGTAAA+GGG | + | chr5.2:72248615-72248634 | MS.gene98525:CDS | 25.0% |
| !!! | TAAGTTTTGATGTTTGATCA+TGG | + | chr5.2:72246831-72246850 | MS.gene98525:intron | 25.0% |
| AACATAAACCTACCTGAATA+AGG | - | chr5.2:72247997-72248016 | None:intergenic | 30.0% | |
| AGTTGAACTTAAATTGGGAT+TGG | + | chr5.2:72246231-72246250 | MS.gene98525:CDS | 30.0% | |
| ATAAATGGAAATAACCTCGT+AGG | + | chr5.2:72247905-72247924 | MS.gene98525:CDS | 30.0% | |
| ATATTTGGATCTCGAACTTA+AGG | + | chr5.2:72246267-72246286 | MS.gene98525:CDS | 30.0% | |
| ATTTCAATAAAATTGGACGG+AGG | + | chr5.2:72246313-72246332 | MS.gene98525:CDS | 30.0% | |
| CAGATAACATCAGTAAATCT+CGG | - | chr5.2:72245982-72246001 | None:intergenic | 30.0% | |
| CATGGAAGTTGAACTTAAAT+TGG | + | chr5.2:72246225-72246244 | MS.gene98525:CDS | 30.0% | |
| CTAAAATGTGCATTTGCATA+TGG | - | chr5.2:72248611-72248630 | None:intergenic | 30.0% | |
| CTTTATGGACATGTAATAAG+CGG | + | chr5.2:72245845-72245864 | MS.gene98525:intron | 30.0% | |
| GAGTATAGTACTATTTGGTT+TGG | + | chr5.2:72245511-72245530 | MS.gene98525:CDS | 30.0% | |
| GTATGACACATTTATTGATC+TGG | + | chr5.2:72245873-72245892 | MS.gene98525:intron | 30.0% | |
| TAGTACAAGTTGTCAATTAC+TGG | + | chr5.2:72247532-72247551 | MS.gene98525:intron | 30.0% | |
| TATGCTATGCTACAATACTA+TGG | - | chr5.2:72247569-72247588 | None:intergenic | 30.0% | |
| TGTAAATTCTAACGCACATA+GGG | + | chr5.2:72248207-72248226 | MS.gene98525:intron | 30.0% | |
| TTATTATTCCTCAGTTGTAC+AGG | + | chr5.2:72247097-72247116 | MS.gene98525:CDS | 30.0% | |
| TTCAGGCAAAATTTATGCAT+TGG | + | chr5.2:72247022-72247041 | MS.gene98525:intron | 30.0% | |
| TTGTAAATTCTAACGCACAT+AGG | + | chr5.2:72248206-72248225 | MS.gene98525:intron | 30.0% | |
| ! | ATGAATTATATTGGTTGGTG+TGG | + | chr5.2:72247405-72247424 | MS.gene98525:intron | 30.0% |
| ! | TCAGGTTTGGTCAAAATAAA+TGG | + | chr5.2:72247890-72247909 | MS.gene98525:CDS | 30.0% |
| ! | TGCGACAGAAAACAATTTTA+TGG | + | chr5.2:72246417-72246436 | MS.gene98525:intron | 30.0% |
| ! | TGTGAGATTGAGAGATTTTA+TGG | + | chr5.2:72248276-72248295 | MS.gene98525:intron | 30.0% |
| ! | TTTTCGTATAAGCTATAAGC+TGG | + | chr5.2:72245781-72245800 | MS.gene98525:intron | 30.0% |
| !! | ACTTTGGAATGTCATTGAAA+TGG | + | chr5.2:72247945-72247964 | MS.gene98525:CDS | 30.0% |
| !! | GCAAATGCACATTTTAGTAA+AGG | + | chr5.2:72248614-72248633 | MS.gene98525:CDS | 30.0% |
| AATACCTTCTCCAAGTTTCT+TGG | - | chr5.2:72246531-72246550 | None:intergenic | 35.0% | |
| AATCATCTGTGGAAACAAGA+TGG | - | chr5.2:72247864-72247883 | None:intergenic | 35.0% | |
| AATGCTATCACCAAGAAACT+TGG | + | chr5.2:72246518-72246537 | MS.gene98525:CDS | 35.0% | |
| ATCAAGAATCCTGTTAGGTA+TGG | - | chr5.2:72246465-72246484 | None:intergenic | 35.0% | |
| ATTGTAAGGTGTACAAAGAC+AGG | - | chr5.2:72247805-72247824 | None:intergenic | 35.0% | |
| CACATAGGGTATGTTTGAAT+TGG | + | chr5.2:72248221-72248240 | MS.gene98525:intron | 35.0% | |
| GAGAAATTGTTTCGATGTTC+AGG | + | chr5.2:72247005-72247024 | MS.gene98525:intron | 35.0% | |
| GATAAATTGTATTGCTGCAC+TGG | + | chr5.2:72246057-72246076 | MS.gene98525:intron | 35.0% | |
| GTGTTCAATAGAGATTGATC+TGG | - | chr5.2:72247063-72247082 | None:intergenic | 35.0% | |
| GTTGTAATTTGAGCTTGGAT+TGG | + | chr5.2:72245482-72245501 | MS.gene98525:CDS | 35.0% | |
| TATATCTTTGTCATCTCCTC+CGG | + | chr5.2:72247149-72247168 | MS.gene98525:CDS | 35.0% | |
| TCAGAGAATAAGAATGGTGA+AGG | - | chr5.2:72247339-72247358 | None:intergenic | 35.0% | |
| TCATAAGCTTATGGAGATGT+GGG | + | chr5.2:72245806-72245825 | MS.gene98525:intron | 35.0% | |
| TCTACGAATGTTCCTTATTC+AGG | + | chr5.2:72247982-72248001 | MS.gene98525:CDS | 35.0% | |
| TTCATAAGCTTATGGAGATG+TGG | + | chr5.2:72245805-72245824 | MS.gene98525:intron | 35.0% | |
| ! | AAAGCATCAAGAATCCTGTT+AGG | - | chr5.2:72246470-72246489 | None:intergenic | 35.0% |
| ! | AAGCTGGTTTCATAAGCTTA+TGG | + | chr5.2:72245797-72245816 | MS.gene98525:intron | 35.0% |
| ! | ACACTATTTTCTGCAATCTG+CGG | + | chr5.2:72247599-72247618 | MS.gene98525:intron | 35.0% |
| ! | AGGATTCTTGATGCTTTTGA+AGG | + | chr5.2:72246473-72246492 | MS.gene98525:intron | 35.0% |
| ! | CTTATTTCCATTAGCTCTCT+AGG | + | chr5.2:72248334-72248353 | MS.gene98525:intron | 35.0% |
| ! | GGATTCTTGATGCTTTTGAA+GGG | + | chr5.2:72246474-72246493 | MS.gene98525:intron | 35.0% |
| ! | GGTTAGTTGTAATTTGAGCT+TGG | + | chr5.2:72245477-72245496 | MS.gene98525:CDS | 35.0% |
| !! | AAACCATGAATAATGGGCAA+GGG | - | chr5.2:72248644-72248663 | None:intergenic | 35.0% |
| !! | AACTTGGAGAAGGTATTACA+AGG | + | chr5.2:72246534-72246553 | MS.gene98525:CDS | 35.0% |
| !! | AGTTTTGATCCATACCTAAC+AGG | + | chr5.2:72246453-72246472 | MS.gene98525:intron | 35.0% |
| !! | CTTCACCACTGATTTAAGAT+CGG | - | chr5.2:72245904-72245923 | None:intergenic | 35.0% |
| !! | GATGCTTTTGAAGGGAATAT+TGG | + | chr5.2:72246482-72246501 | MS.gene98525:CDS | 35.0% |
| !! | TATTTGGTTTGGTCCTGTTA+AGG | + | chr5.2:72245522-72245541 | MS.gene98525:CDS | 35.0% |
| !!! | CATTTTGACTAAACAGTGTC+TGG | - | chr5.2:72247746-72247765 | None:intergenic | 35.0% |
| !!! | GATAAGTGCTGATTTTGGAA+AGG | + | chr5.2:72246195-72246214 | MS.gene98525:intron | 35.0% |
| !!! | GATTGAGATTTTAGCTTCTG+GGG | + | chr5.2:72245456-72245475 | MS.gene98525:CDS | 35.0% |
| !!! | GGATTGAGATTTTAGCTTCT+GGG | + | chr5.2:72245455-72245474 | MS.gene98525:CDS | 35.0% |
| !!! | TTGGAAGTTTTGAGTTCTTG+TGG | - | chr5.2:72246727-72246746 | None:intergenic | 35.0% |
| AACGAAGAGTGATCATCAAC+CGG | - | chr5.2:72246596-72246615 | None:intergenic | 40.0% | |
| AAGCTATCCTAGAGAGCTAA+TGG | - | chr5.2:72248344-72248363 | None:intergenic | 40.0% | |
| ATCACCAAGAAACTTGGAGA+AGG | + | chr5.2:72246524-72246543 | MS.gene98525:CDS | 40.0% | |
| ATTGTTAAGCCTGATGAGAG+TGG | + | chr5.2:72245433-72245452 | MS.gene98525:CDS | 40.0% | |
| CAAGACGTCTCATTGATGAA+GGG | + | chr5.2:72248526-72248545 | MS.gene98525:intron | 40.0% | |
| CAATCTCTATTGAACACTGC+AGG | + | chr5.2:72247066-72247085 | MS.gene98525:CDS | 40.0% | |
| CATCAAACAGACAAGAACTC+TGG | - | chr5.2:72246895-72246914 | None:intergenic | 40.0% | |
| CCTGTTAAGGTTTCTGATCA+AGG | + | chr5.2:72245535-72245554 | MS.gene98525:CDS | 40.0% | |
| CCTTGATCAGAAACCTTAAC+AGG | - | chr5.2:72245538-72245557 | None:intergenic | 40.0% | |
| CGAATGTTCCTTATTCAGGT+AGG | + | chr5.2:72247986-72248005 | MS.gene98525:intron | 40.0% | |
| CGAGATCCAAATATCCTTCA+TGG | - | chr5.2:72246261-72246280 | None:intergenic | 40.0% | |
| GAGATTTCAGATCAGAAAGC+AGG | + | chr5.2:72247177-72247196 | MS.gene98525:CDS | 40.0% | |
| GGAGAACCATGAAGGATATT+TGG | + | chr5.2:72246252-72246271 | MS.gene98525:CDS | 40.0% | |
| GTATTTGAAGAGTCTTCCAC+AGG | + | chr5.2:72246565-72246584 | MS.gene98525:CDS | 40.0% | |
| GTTCTTGTCTGTTTGATGTC+TGG | + | chr5.2:72246897-72246916 | MS.gene98525:intron | 40.0% | |
| TCAAGACGTCTCATTGATGA+AGG | + | chr5.2:72248525-72248544 | MS.gene98525:intron | 40.0% | |
| TCATTGAAATGGAGCAGCAT+TGG | + | chr5.2:72247956-72247975 | MS.gene98525:CDS | 40.0% | |
| TCGATAATCGTCCACATAAC+TGG | - | chr5.2:72248575-72248594 | None:intergenic | 40.0% | |
| TGTCTGTTTGATGTCTGGTT+CGG | + | chr5.2:72246902-72246921 | MS.gene98525:intron | 40.0% | |
| TTACCCTTGCCCATTATTCA+TGG | + | chr5.2:72248638-72248657 | MS.gene98525:CDS | 40.0% | |
| TTACTAAGTGAGTCGTCGAT+TGG | + | chr5.2:72246641-72246660 | MS.gene98525:CDS | 40.0% | |
| TTGTATTGCTGCACTGGATA+TGG | + | chr5.2:72246063-72246082 | MS.gene98525:intron | 40.0% | |
| TTGTTAAGCCTGATGAGAGT+GGG | + | chr5.2:72245434-72245453 | MS.gene98525:CDS | 40.0% | |
| ! | GATGATTCAAGCTTCAGGTT+TGG | + | chr5.2:72247877-72247896 | MS.gene98525:intron | 40.0% |
| ! | TACTAAGTGAGTCGTCGATT+GGG | + | chr5.2:72246642-72246661 | MS.gene98525:CDS | 40.0% |
| ! | TCGATTGGGTTTGAAACCAA+TGG | + | chr5.2:72246656-72246675 | MS.gene98525:CDS | 40.0% |
| ! | TGATCTGAAATCTCCACAAC+CGG | - | chr5.2:72247171-72247190 | None:intergenic | 40.0% |
| ! | TTTTACTGCAGCCAGTTATG+TGG | + | chr5.2:72248561-72248580 | MS.gene98525:intron | 40.0% |
| !! | ACCACTGATTTAAGATCGGA+CGG | - | chr5.2:72245900-72245919 | None:intergenic | 40.0% |
| !! | GAAACCATGAATAATGGGCA+AGG | - | chr5.2:72248645-72248664 | None:intergenic | 40.0% |
| !! | GCTGATTTTGGAAAGGTTGA+AGG | + | chr5.2:72246202-72246221 | MS.gene98525:intron | 40.0% |
| !! | GTGCATCTTGGCTTTATCAA+GGG | + | chr5.2:72246335-72246354 | MS.gene98525:CDS | 40.0% |
| !! | TTTTGGAAAGGTTGAAGGCA+TGG | + | chr5.2:72246207-72246226 | MS.gene98525:intron | 40.0% |
| !!! | CTGCACGTTTTTTTAGATGC+CGG | + | chr5.2:72245999-72246018 | MS.gene98525:intron | 40.0% |
| !!! | GGGATTGAGATTTTAGCTTC+TGG | + | chr5.2:72245454-72245473 | MS.gene98525:CDS | 40.0% |
| !!! | TGCACGTTTTTTTAGATGCC+GGG | + | chr5.2:72246000-72246019 | MS.gene98525:intron | 40.0% |
| !!! | TTTTTTAGATGCCGGGAATC+TGG | + | chr5.2:72246007-72246026 | MS.gene98525:intron | 40.0% |
| AACAGCCTCGTCTAAAGAGA+TGG | - | chr5.2:72246780-72246799 | None:intergenic | 45.0% | |
| ACCAATGAGATGCATGCTAC+TGG | - | chr5.2:72247258-72247277 | None:intergenic | 45.0% | |
| ACCAGTAGCATGCATCTCAT+TGG | + | chr5.2:72247254-72247273 | MS.gene98525:CDS | 45.0% | |
| ACCATCAGATTGGGTGACTT+TGG | + | chr5.2:72247929-72247948 | MS.gene98525:CDS | 45.0% | |
| AGCCGAGCAGTATCAATCAA+TGG | + | chr5.2:72245956-72245975 | MS.gene98525:intron | 45.0% | |
| ATCTCAATCCCACTCTCATC+AGG | - | chr5.2:72245445-72245464 | None:intergenic | 45.0% | |
| ATGAAGCTCGATCCAAGACA+GGG | + | chr5.2:72247435-72247454 | MS.gene98525:intron | 45.0% | |
| CAGACAAGAACTCTGGATCA+TGG | - | chr5.2:72246888-72246907 | None:intergenic | 45.0% | |
| CCACAGATGATTCAAGCTTC+AGG | + | chr5.2:72247872-72247891 | MS.gene98525:intron | 45.0% | |
| CCTGAAGCTTGAATCATCTG+TGG | - | chr5.2:72247875-72247894 | None:intergenic | 45.0% | |
| CTCGTAGGTACCATCAGATT+GGG | + | chr5.2:72247920-72247939 | MS.gene98525:CDS | 45.0% | |
| CTCTATTGAACACTGCAGGA+TGG | + | chr5.2:72247070-72247089 | MS.gene98525:CDS | 45.0% | |
| CTCTGGATCATGGTTCAGTT+CGG | - | chr5.2:72246878-72246897 | None:intergenic | 45.0% | |
| GCAGAGGTTAGGAATAGGTA+GGG | - | chr5.2:72246705-72246724 | None:intergenic | 45.0% | |
| GGGTATTTCCTGTACAACTG+AGG | - | chr5.2:72247108-72247127 | None:intergenic | 45.0% | |
| GTAGCATGCATCTCATTGGT+AGG | + | chr5.2:72247258-72247277 | MS.gene98525:intron | 45.0% | |
| TCAAGGTTCAGCACAAGTTC+AGG | + | chr5.2:72245552-72245571 | MS.gene98525:CDS | 45.0% | |
| TCCAAAGTCACCCAATCTGA+TGG | - | chr5.2:72247933-72247952 | None:intergenic | 45.0% | |
| TGTACTTGACAACCCTGTCT+TGG | - | chr5.2:72247450-72247469 | None:intergenic | 45.0% | |
| TTGGGATTGGAGAACCATGA+AGG | + | chr5.2:72246244-72246263 | MS.gene98525:CDS | 45.0% | |
| TTGTGGCAGAGGTTAGGAAT+AGG | - | chr5.2:72246710-72246729 | None:intergenic | 45.0% | |
| TTTGAAGAGTCTTCCACAGG+AGG | + | chr5.2:72246568-72246587 | MS.gene98525:CDS | 45.0% | |
| ! | GGCCATTGATTGATACTGCT+CGG | - | chr5.2:72245961-72245980 | None:intergenic | 45.0% |
| !! | GGTGCATCTTGGCTTTATCA+AGG | + | chr5.2:72246334-72246353 | MS.gene98525:CDS | 45.0% |
| !!! | GTTTTGAGTTCTTGTGGCAG+AGG | - | chr5.2:72246721-72246740 | None:intergenic | 45.0% |
| ACTATAGCGCTACAACGCAG+CGG | + | chr5.2:72247471-72247490 | MS.gene98525:intron | 50.0% | |
| CATGAAGCTCGATCCAAGAC+AGG | + | chr5.2:72247434-72247453 | MS.gene98525:intron | 50.0% | |
| CCAATCTGATGGTACCTACG+AGG | - | chr5.2:72247922-72247941 | None:intergenic | 50.0% | |
| CCTCGTAGGTACCATCAGAT+TGG | + | chr5.2:72247919-72247938 | MS.gene98525:CDS | 50.0% | |
| GAGTTCTTGTGGCAGAGGTT+AGG | - | chr5.2:72246716-72246735 | None:intergenic | 50.0% | |
| GCCGTCCGATCTTAAATCAG+TGG | + | chr5.2:72245896-72245915 | MS.gene98525:intron | 50.0% | |
| GCTAGCCATCTCTTTAGACG+AGG | + | chr5.2:72246772-72246791 | MS.gene98525:CDS | 50.0% | |
| GGCAGAGGTTAGGAATAGGT+AGG | - | chr5.2:72246706-72246725 | None:intergenic | 50.0% | |
| TTGGTAGGGATCCAGATTCC+CGG | - | chr5.2:72246021-72246040 | None:intergenic | 50.0% | |
| TTTGTCATCTCCTCCGGTTG+TGG | + | chr5.2:72247155-72247174 | MS.gene98525:CDS | 50.0% | |
| ! | AATTGGACGGAGGTGCATCT+TGG | + | chr5.2:72246323-72246342 | MS.gene98525:CDS | 50.0% |
| ! | TCTGAAATCTCCACAACCGG+AGG | - | chr5.2:72247168-72247187 | None:intergenic | 50.0% |
| GAGTCTTCCACAGGAGGTTC+CGG | + | chr5.2:72246574-72246593 | MS.gene98525:CDS | 55.0% | |
| TCATCAACCGGAACCTCCTG+TGG | - | chr5.2:72246584-72246603 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 72245367 | 72248766 | 72245367 | ID=MS.gene98525 |
| chr5.2 | mRNA | 72245367 | 72248766 | 72245367 | ID=MS.gene98525.t1;Parent=MS.gene98525 |
| chr5.2 | exon | 72245367 | 72245573 | 72245367 | ID=MS.gene98525.t1.exon1;Parent=MS.gene98525.t1 |
| chr5.2 | CDS | 72245367 | 72245573 | 72245367 | ID=cds.MS.gene98525.t1;Parent=MS.gene98525.t1 |
| chr5.2 | exon | 72246217 | 72246356 | 72246217 | ID=MS.gene98525.t1.exon2;Parent=MS.gene98525.t1 |
| chr5.2 | CDS | 72246217 | 72246356 | 72246217 | ID=cds.MS.gene98525.t1;Parent=MS.gene98525.t1 |
| chr5.2 | exon | 72246475 | 72246829 | 72246475 | ID=MS.gene98525.t1.exon3;Parent=MS.gene98525.t1 |
| chr5.2 | CDS | 72246475 | 72246829 | 72246475 | ID=cds.MS.gene98525.t1;Parent=MS.gene98525.t1 |
| chr5.2 | exon | 72247027 | 72247275 | 72247027 | ID=MS.gene98525.t1.exon4;Parent=MS.gene98525.t1 |
| chr5.2 | CDS | 72247027 | 72247275 | 72247027 | ID=cds.MS.gene98525.t1;Parent=MS.gene98525.t1 |
| chr5.2 | exon | 72247878 | 72248003 | 72247878 | ID=MS.gene98525.t1.exon5;Parent=MS.gene98525.t1 |
| chr5.2 | CDS | 72247878 | 72248003 | 72247878 | ID=cds.MS.gene98525.t1;Parent=MS.gene98525.t1 |
| chr5.2 | exon | 72248572 | 72248766 | 72248572 | ID=MS.gene98525.t1.exon6;Parent=MS.gene98525.t1 |
| chr5.2 | CDS | 72248572 | 72248766 | 72248572 | ID=cds.MS.gene98525.t1;Parent=MS.gene98525.t1 |
| Gene Sequence |
| Protein sequence |
