Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98531.t1 | PNX78236.1 | 63.1 | 523 | 138 | 4 | 1 | 476 | 92 | 606 | 1.20E-186 | 662.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98531.t1 | A0A2K3LI91 | 63.1 | 523 | 138 | 4 | 1 | 476 | 92 | 606 | 8.5e-187 | 662.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051710 | MS.gene98531 | 0.822865 | 1.88E-53 | -1.69E-46 |
| MS.gene054801 | MS.gene98531 | 0.803635 | 3.17E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98531.t1 | MTR_7g078980 | 39.073 | 151 | 33 | 3 | 31 | 181 | 20 | 111 | 3.50e-20 | 86.3 |
| MS.gene98531.t1 | MTR_7g078930 | 74.545 | 55 | 14 | 0 | 127 | 181 | 75 | 129 | 2.58e-19 | 84.3 |
| MS.gene98531.t1 | MTR_1g055005 | 44.330 | 97 | 50 | 2 | 352 | 446 | 47 | 141 | 1.18e-13 | 70.1 |
| MS.gene98531.t1 | MTR_3g028350 | 38.636 | 88 | 29 | 2 | 212 | 299 | 43 | 105 | 4.09e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98531.t1 | AT5G33406 | 43.407 | 364 | 155 | 4 | 145 | 458 | 1 | 363 | 5.62e-98 | 305 |
| MS.gene98531.t1 | AT4G15020 | 34.341 | 463 | 249 | 8 | 13 | 423 | 266 | 725 | 1.14e-76 | 256 |
| MS.gene98531.t1 | AT4G15020 | 34.341 | 463 | 249 | 8 | 13 | 423 | 266 | 725 | 1.14e-76 | 256 |
| MS.gene98531.t1 | AT3G22220 | 33.761 | 468 | 252 | 8 | 13 | 427 | 262 | 724 | 3.59e-75 | 252 |
| MS.gene98531.t1 | AT3G22220 | 33.761 | 468 | 252 | 8 | 13 | 427 | 262 | 724 | 3.59e-75 | 252 |
| MS.gene98531.t1 | AT3G22220 | 33.761 | 468 | 252 | 8 | 13 | 427 | 262 | 724 | 3.59e-75 | 252 |
| MS.gene98531.t1 | AT3G22220 | 33.761 | 468 | 252 | 8 | 13 | 427 | 262 | 724 | 3.59e-75 | 252 |
| MS.gene98531.t1 | AT1G79740 | 30.635 | 457 | 255 | 8 | 10 | 417 | 41 | 484 | 4.88e-70 | 233 |
| MS.gene98531.t1 | AT1G79740 | 30.635 | 457 | 255 | 8 | 10 | 417 | 41 | 484 | 4.88e-70 | 233 |
| MS.gene98531.t1 | AT1G79740 | 30.635 | 457 | 255 | 8 | 10 | 417 | 174 | 617 | 1.24e-68 | 232 |
| MS.gene98531.t1 | AT1G79740 | 30.635 | 457 | 255 | 8 | 10 | 417 | 174 | 617 | 1.24e-68 | 232 |
| MS.gene98531.t1 | AT3G17450 | 29.837 | 429 | 250 | 5 | 2 | 380 | 363 | 790 | 2.27e-67 | 233 |
| MS.gene98531.t1 | AT3G17450 | 29.837 | 429 | 250 | 5 | 2 | 380 | 363 | 790 | 2.27e-67 | 233 |
| MS.gene98531.t1 | AT3G13030 | 30.861 | 418 | 229 | 9 | 13 | 378 | 120 | 529 | 1.67e-51 | 184 |
| MS.gene98531.t1 | AT3G13030 | 30.861 | 418 | 229 | 9 | 13 | 378 | 120 | 529 | 1.67e-51 | 184 |
| MS.gene98531.t1 | AT3G13030 | 30.861 | 418 | 229 | 9 | 13 | 378 | 120 | 529 | 1.67e-51 | 184 |
| MS.gene98531.t1 | AT3G13030 | 30.861 | 418 | 229 | 9 | 13 | 378 | 120 | 529 | 1.67e-51 | 184 |
| MS.gene98531.t1 | AT3G13020 | 30.048 | 416 | 234 | 8 | 13 | 378 | 193 | 601 | 3.72e-49 | 179 |
| MS.gene98531.t1 | AT3G13030 | 29.087 | 416 | 206 | 10 | 13 | 378 | 120 | 496 | 6.64e-43 | 159 |
| MS.gene98531.t1 | AT1G36095 | 40.741 | 162 | 96 | 0 | 53 | 214 | 137 | 298 | 1.78e-32 | 126 |
| MS.gene98531.t1 | AT1G43260 | 36.747 | 166 | 103 | 2 | 9 | 173 | 104 | 268 | 2.21e-32 | 125 |
| MS.gene98531.t1 | AT3G13010 | 25.060 | 415 | 249 | 11 | 13 | 379 | 169 | 569 | 1.07e-29 | 123 |
| MS.gene98531.t1 | AT5G31412 | 45.455 | 110 | 60 | 0 | 15 | 124 | 135 | 244 | 3.06e-26 | 111 |
Find 99 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAGTTTACTTCTCTTCT+TGG | 0.123186 | 5.2:-72310807 | None:intergenic |
| ATGCAAACCTCTCAGCAATT+TGG | 0.171724 | 5.2:-72310345 | None:intergenic |
| GTGCACTTCTGCCATCATTT+TGG | 0.194903 | 5.2:+72310042 | MS.gene98531:CDS |
| TCCTCTTCACCATAATAATT+TGG | 0.200278 | 5.2:-72311223 | None:intergenic |
| TGAACACAAGGGCTAGTATT+AGG | 0.241356 | 5.2:+72311071 | MS.gene98531:CDS |
| GGTTTACTATAAAAGTATTT+AGG | 0.246423 | 5.2:-72310305 | None:intergenic |
| TTGGGATCTTTCTCAATATC+TGG | 0.254367 | 5.2:-72310326 | None:intergenic |
| TATCATACTGAATGGTTAAC+AGG | 0.259479 | 5.2:+72310935 | MS.gene98531:CDS |
| TAAGATTCCTAGGATTAAAA+AGG | 0.284991 | 5.2:+72309776 | MS.gene98531:CDS |
| GAGGATGATCCAAATTATTA+TGG | 0.286471 | 5.2:+72311214 | MS.gene98531:CDS |
| AGAACAAACCTCACATCTTT+TGG | 0.312210 | 5.2:+72309706 | MS.gene98531:CDS |
| AAGAAGAAGATGATGATAAT+TGG | 0.322122 | 5.2:+72311188 | MS.gene98531:CDS |
| AGTTTGGTTTGTAGTGCTTC+AGG | 0.326354 | 5.2:+72310652 | MS.gene98531:CDS |
| CTTCAGGATGTGAGCGCAAC+TGG | 0.351319 | 5.2:+72310668 | MS.gene98531:CDS |
| TGCAAACCTCTCAGCAATTT+GGG | 0.359854 | 5.2:-72310344 | None:intergenic |
| GAAGATGTTGGAGCCTCATT+TGG | 0.363366 | 5.2:+72309422 | None:intergenic |
| GCTGAGTGGTGGATGAATTA+TGG | 0.375891 | 5.2:+72310586 | MS.gene98531:intron |
| TCATGAACAAATTCTTCAAC+AGG | 0.376778 | 5.2:-72310989 | None:intergenic |
| CAAAAGGGGTGTTCTCTTGT+AGG | 0.377000 | 5.2:+72309804 | MS.gene98531:CDS |
| GAACACAAGGGCTAGTATTA+GGG | 0.381186 | 5.2:+72311072 | MS.gene98531:CDS |
| AACCAAACTCAGCACTTTGA+TGG | 0.386442 | 5.2:-72310638 | None:intergenic |
| GGCCATCAAAGTGCTGAGTT+TGG | 0.386630 | 5.2:+72310636 | MS.gene98531:CDS |
| GTATTTGTTGAAGATGTTGT+AGG | 0.393067 | 5.2:+72311157 | MS.gene98531:CDS |
| GACCTCATGTTGGAAGATAT+TGG | 0.394320 | 5.2:+72309753 | MS.gene98531:CDS |
| TTTAGCTTCCTTATTGTACT+TGG | 0.404209 | 5.2:-72310000 | None:intergenic |
| CTAGCCCTTGTGTTCACTAT+AGG | 0.411361 | 5.2:-72311064 | None:intergenic |
| CATATCGGTCTTTCAAAGCT+TGG | 0.413634 | 5.2:-72310868 | None:intergenic |
| GTTGAGGTCCAAGTACAATA+AGG | 0.415926 | 5.2:+72309992 | MS.gene98531:CDS |
| TTTAACCAACTCAACATTGT+TGG | 0.417354 | 5.2:-72309874 | None:intergenic |
| AAGATATTGGTAAGATTCCT+AGG | 0.417549 | 5.2:+72309766 | MS.gene98531:CDS |
| GCATATATTTCACCCATTGC+AGG | 0.418557 | 5.2:-72310140 | None:intergenic |
| CTCATTAACCCCACTTGCAT+TGG | 0.431159 | 5.2:-72311041 | None:intergenic |
| AACAGGGGAGATGGAAGAGA+TGG | 0.441699 | 5.2:+72310952 | MS.gene98531:CDS |
| TCAAAATCATTGATAAAAGA+TGG | 0.443562 | 5.2:+72310234 | MS.gene98531:CDS |
| TTGGCTGCAAGGGTAAACTA+TGG | 0.444202 | 5.2:+72309441 | MS.gene98531:CDS |
| ATGAAAATGATGATCTAACT+TGG | 0.444991 | 5.2:+72311008 | MS.gene98531:CDS |
| TATAAAAGTATTTAGGATTG+AGG | 0.457902 | 5.2:-72310298 | None:intergenic |
| CATCATCCATTGCATGCTGC+TGG | 0.483368 | 5.2:+72310269 | MS.gene98531:CDS |
| AACTCCGGATTTGACACTAA+TGG | 0.490085 | 5.2:+72310615 | MS.gene98531:CDS |
| AGAGTCAAAGACTGGAGAAA+TGG | 0.491539 | 5.2:+72309575 | MS.gene98531:CDS |
| TAAGGAAGCTAAAGGTAGGC+AGG | 0.502654 | 5.2:+72310010 | MS.gene98531:CDS |
| TCTTGTTGACGTGCTAAGAA+TGG | 0.508954 | 5.2:+72310100 | MS.gene98531:CDS |
| ATGGCCATTAGTGTCAAATC+CGG | 0.512170 | 5.2:-72310619 | None:intergenic |
| TTGTTCCTTCGCATTATCCA+TGG | 0.512640 | 5.2:-72310165 | None:intergenic |
| ACAGGGGAGATGGAAGAGAT+GGG | 0.516932 | 5.2:+72310953 | MS.gene98531:CDS |
| TTAAAATCATACAACATCAC+GGG | 0.516976 | 5.2:-72310911 | None:intergenic |
| TTTACCCTTGCAGCCAAATG+AGG | 0.517669 | 5.2:-72309435 | None:intergenic |
| GCTTCTGAAGAGTCAAAGAC+TGG | 0.521479 | 5.2:+72309567 | MS.gene98531:CDS |
| GAAAACCAACAATGTTGAGT+TGG | 0.522947 | 5.2:+72309869 | MS.gene98531:CDS |
| GCATCAGAAGTTGCAAGAGT+TGG | 0.523127 | 5.2:+72310829 | MS.gene98531:CDS |
| AGAAGATGATGATAATTGGT+TGG | 0.528781 | 5.2:+72311192 | MS.gene98531:CDS |
| CCACATTTCTTACTTTGCAA+AGG | 0.529530 | 5.2:+72309919 | MS.gene98531:CDS |
| CATTTGCTTTGAGCCTAATG+AGG | 0.529987 | 5.2:+72309844 | MS.gene98531:CDS |
| GGAAGCAACTATGTTTATGC+TGG | 0.533778 | 5.2:+72309669 | MS.gene98531:CDS |
| TGGAGCCTCATTTGGCTGCA+AGG | 0.534454 | 5.2:+72309430 | MS.gene98531:CDS |
| AGTACATCATTCCAAAATGA+TGG | 0.537042 | 5.2:-72310053 | None:intergenic |
| GGAGATGGAAGAGATGGGAG+AGG | 0.537948 | 5.2:+72310958 | MS.gene98531:CDS |
| TGAATGGTTAACAGGGGAGA+TGG | 0.538791 | 5.2:+72310943 | MS.gene98531:CDS |
| CAAAATCATTGATAAAAGAT+GGG | 0.542128 | 5.2:+72310235 | MS.gene98531:CDS |
| ACAATAAGGAAGCTAAAGGT+AGG | 0.545734 | 5.2:+72310006 | MS.gene98531:CDS |
| ATTAAAATCATACAACATCA+CGG | 0.545758 | 5.2:-72310912 | None:intergenic |
| TCTTGTCAAGACAATCATAT+CGG | 0.545836 | 5.2:-72310883 | None:intergenic |
| GGAGCCTCATTTGGCTGCAA+GGG | 0.552479 | 5.2:+72309431 | MS.gene98531:CDS |
| AAGTACAATAAGGAAGCTAA+AGG | 0.558687 | 5.2:+72310002 | MS.gene98531:CDS |
| CACGTCAACAAGAGGTGCCA+TGG | 0.566526 | 5.2:-72310090 | None:intergenic |
| GGGTGAAATATATGCAGCCA+TGG | 0.574934 | 5.2:+72310148 | MS.gene98531:CDS |
| TGAAAATGATGATCTAACTT+GGG | 0.580403 | 5.2:+72311009 | MS.gene98531:CDS |
| CATGCAATGGATGATGAAGT+TGG | 0.582948 | 5.2:-72310262 | None:intergenic |
| GCTCGATTATGTCCGATGGT+TGG | 0.585062 | 5.2:+72309466 | MS.gene98531:CDS |
| AATGTTGAGTTGGTTAAACA+TGG | 0.586870 | 5.2:+72309879 | MS.gene98531:CDS |
| GAATTATGGAGCAGAAACTC+CGG | 0.589304 | 5.2:+72310600 | MS.gene98531:CDS |
| TAGTAACCAGCAGCATGCAA+TGG | 0.590399 | 5.2:-72310275 | None:intergenic |
| TCCAAATTATTATGGTGAAG+AGG | 0.591275 | 5.2:+72311222 | MS.gene98531:CDS |
| ATCAAGTTGCCAATGCAAGT+GGG | 0.598161 | 5.2:+72311032 | MS.gene98531:CDS |
| GATCAAGTTGCCAATGCAAG+TGG | 0.601135 | 5.2:+72311031 | MS.gene98531:CDS |
| GATGGTTGGACAGACCGAAA+AGG | 0.605006 | 5.2:+72309480 | MS.gene98531:CDS |
| TCTATGCAGTGTGCAACACA+TGG | 0.605518 | 5.2:-72309732 | None:intergenic |
| ATCATACTGAATGGTTAACA+GGG | 0.605897 | 5.2:+72310936 | MS.gene98531:CDS |
| TGGTTAAACATGGAGTCACA+AGG | 0.606856 | 5.2:+72309889 | MS.gene98531:CDS |
| ATGAGCCTATAGTGAACACA+AGG | 0.607069 | 5.2:+72311059 | MS.gene98531:CDS |
| AGATGATGATAATTGGTTGG+AGG | 0.612525 | 5.2:+72311195 | MS.gene98531:CDS |
| ATTCTTAGCACGTCAACAAG+AGG | 0.615152 | 5.2:-72310098 | None:intergenic |
| ACTCCACACTCTTAAGTCCA+TGG | 0.620572 | 5.2:+72310073 | MS.gene98531:CDS |
| TATTAGGGCAGAACGAGCAA+AGG | 0.625543 | 5.2:+72311087 | MS.gene98531:CDS |
| TACCAATATCTTCCAACATG+AGG | 0.628099 | 5.2:-72309755 | None:intergenic |
| TGCAGCCATGGATAATGCGA+AGG | 0.634019 | 5.2:+72310160 | MS.gene98531:CDS |
| TCAAGTTGCCAATGCAAGTG+GGG | 0.642208 | 5.2:+72311033 | MS.gene98531:CDS |
| GGATGCTCGATTATGTCCGA+TGG | 0.644130 | 5.2:+72309462 | MS.gene98531:CDS |
| TTAGGCTCAAAGCAAATGTG+TGG | 0.655077 | 5.2:-72309839 | None:intergenic |
| GTGCAATTGATTACTGACAA+TGG | 0.657518 | 5.2:+72309648 | MS.gene98531:CDS |
| GTGCCATGGACTTAAGAGTG+TGG | 0.673069 | 5.2:-72310076 | None:intergenic |
| CATGGAGTCCAAAAGATGTG+AGG | 0.687186 | 5.2:-72309714 | None:intergenic |
| CCTTTGCAAAGTAAGAAATG+TGG | 0.689473 | 5.2:-72309919 | None:intergenic |
| AAAGATCCCAAATTGCTGAG+AGG | 0.691344 | 5.2:+72310338 | MS.gene98531:CDS |
| ACACTGCATAGACCTCATGT+TGG | 0.701364 | 5.2:+72309743 | MS.gene98531:CDS |
| TAAAATCATACAACATCACG+GGG | 0.706865 | 5.2:-72310910 | None:intergenic |
| TGAGATGGGTGAGCAAAATG+TGG | 0.720487 | 5.2:+72309626 | MS.gene98531:CDS |
| TCATACTGAATGGTTAACAG+GGG | 0.727022 | 5.2:+72310937 | MS.gene98531:CDS |
| TGAGCCTATAGTGAACACAA+GGG | 0.779784 | 5.2:+72311060 | MS.gene98531:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAGGATATACAAAA+GGG | + | chr5.2:72309789-72309808 | MS.gene98531:CDS | 15.0% |
| !!! | AAAAATTTCAATTTTAATGC+AGG | + | chr5.2:72310194-72310213 | MS.gene98531:CDS | 15.0% |
| !!! | ATTTTAATTATCATACTGAA+TGG | + | chr5.2:72310927-72310946 | MS.gene98531:CDS | 15.0% |
| !! | ATTAAAATCATACAACATCA+CGG | - | chr5.2:72310915-72310934 | None:intergenic | 20.0% |
| !! | ATTCACCAAAAAATTAATCA+AGG | - | chr5.2:72309511-72309530 | None:intergenic | 20.0% |
| !! | CAAAATCATTGATAAAAGAT+GGG | + | chr5.2:72310235-72310254 | MS.gene98531:CDS | 20.0% |
| !! | GATTAAAAAGGATATACAAA+AGG | + | chr5.2:72309788-72309807 | MS.gene98531:CDS | 20.0% |
| !! | TCAAAATCATTGATAAAAGA+TGG | + | chr5.2:72310234-72310253 | MS.gene98531:CDS | 20.0% |
| !! | TTAAAAAGGATATACAAAAG+GGG | + | chr5.2:72309790-72309809 | MS.gene98531:CDS | 20.0% |
| !!! | GGTTTACTATAAAAGTATTT+AGG | - | chr5.2:72310308-72310327 | None:intergenic | 20.0% |
| !!! | TAGAACCTTGATTAATTTTT+TGG | + | chr5.2:72309503-72309522 | MS.gene98531:CDS | 20.0% |
| !!! | TATAAAAGTATTTAGGATTG+AGG | - | chr5.2:72310301-72310320 | None:intergenic | 20.0% |
| ! | AAGAAGAAGATGATGATAAT+TGG | + | chr5.2:72311188-72311207 | MS.gene98531:CDS | 25.0% |
| ! | ATGAAAATGATGATCTAACT+TGG | + | chr5.2:72311008-72311027 | MS.gene98531:CDS | 25.0% |
| ! | TAAGATTCCTAGGATTAAAA+AGG | + | chr5.2:72309776-72309795 | MS.gene98531:CDS | 25.0% |
| ! | TGAAAATGATGATCTAACTT+GGG | + | chr5.2:72311009-72311028 | MS.gene98531:CDS | 25.0% |
| ! | TTAAAATCATACAACATCAC+GGG | - | chr5.2:72310914-72310933 | None:intergenic | 25.0% |
| !! | TGTATATCCTTTTTAATCCT+AGG | - | chr5.2:72309786-72309805 | None:intergenic | 25.0% |
| !! | TTTAGAGTATCTTACAATCT+TGG | + | chr5.2:72310743-72310762 | MS.gene98531:intron | 25.0% |
| !!! | AGATGTTTTTATGTGAAGAA+TGG | + | chr5.2:72309970-72309989 | MS.gene98531:CDS | 25.0% |
| AAGATATTGGTAAGATTCCT+AGG | + | chr5.2:72309766-72309785 | MS.gene98531:CDS | 30.0% | |
| AAGTACAATAAGGAAGCTAA+AGG | + | chr5.2:72310002-72310021 | MS.gene98531:CDS | 30.0% | |
| AATGAGAAAAAACCTGCAAT+GGG | + | chr5.2:72310128-72310147 | MS.gene98531:CDS | 30.0% | |
| ACTTTGTGAATGTAATGAAG+TGG | + | chr5.2:72310382-72310401 | MS.gene98531:intron | 30.0% | |
| AGAAGATGATGATAATTGGT+TGG | + | chr5.2:72311192-72311211 | MS.gene98531:CDS | 30.0% | |
| AGTACATCATTCCAAAATGA+TGG | - | chr5.2:72310056-72310075 | None:intergenic | 30.0% | |
| ATCATACTGAATGGTTAACA+GGG | + | chr5.2:72310936-72310955 | MS.gene98531:CDS | 30.0% | |
| GAGGATGATCCAAATTATTA+TGG | + | chr5.2:72311214-72311233 | MS.gene98531:CDS | 30.0% | |
| TAAAAACATCTCTCTAAGCT+TGG | - | chr5.2:72309961-72309980 | None:intergenic | 30.0% | |
| TAAAATCATACAACATCACG+GGG | - | chr5.2:72310913-72310932 | None:intergenic | 30.0% | |
| TAATGAGAAAAAACCTGCAA+TGG | + | chr5.2:72310127-72310146 | MS.gene98531:CDS | 30.0% | |
| TATCATACTGAATGGTTAAC+AGG | + | chr5.2:72310935-72310954 | MS.gene98531:CDS | 30.0% | |
| TCATGAACAAATTCTTCAAC+AGG | - | chr5.2:72310992-72311011 | None:intergenic | 30.0% | |
| TCCAAATTATTATGGTGAAG+AGG | + | chr5.2:72311222-72311241 | MS.gene98531:CDS | 30.0% | |
| TCCTCTTCACCATAATAATT+TGG | - | chr5.2:72311226-72311245 | None:intergenic | 30.0% | |
| TCTTGTCAAGACAATCATAT+CGG | - | chr5.2:72310886-72310905 | None:intergenic | 30.0% | |
| TTTAACCAACTCAACATTGT+TGG | - | chr5.2:72309877-72309896 | None:intergenic | 30.0% | |
| ! | GTATTTGTTGAAGATGTTGT+AGG | + | chr5.2:72311157-72311176 | MS.gene98531:CDS | 30.0% |
| ! | TAATCAAGGTTCTACCTTTT+CGG | - | chr5.2:72309497-72309516 | None:intergenic | 30.0% |
| ! | TTTAGCTTCCTTATTGTACT+TGG | - | chr5.2:72310003-72310022 | None:intergenic | 30.0% |
| ! | TTTTATGTGAAGAATGGTTG+AGG | + | chr5.2:72309976-72309995 | MS.gene98531:CDS | 30.0% |
| !! | AATGTTGAGTTGGTTAAACA+TGG | + | chr5.2:72309879-72309898 | MS.gene98531:CDS | 30.0% |
| !! | AGTGATTTTGTTGATGAGAT+GGG | + | chr5.2:72309612-72309631 | MS.gene98531:CDS | 30.0% |
| ACAATAAGGAAGCTAAAGGT+AGG | + | chr5.2:72310006-72310025 | MS.gene98531:CDS | 35.0% | |
| AGATGATGATAATTGGTTGG+AGG | + | chr5.2:72311195-72311214 | MS.gene98531:CDS | 35.0% | |
| ATGATGACTATTTGGAGGAA+AGG | + | chr5.2:72310445-72310464 | MS.gene98531:intron | 35.0% | |
| CCACATTTCTTACTTTGCAA+AGG | + | chr5.2:72309919-72309938 | MS.gene98531:CDS | 35.0% | |
| CCTTTGCAAAGTAAGAAATG+TGG | - | chr5.2:72309922-72309941 | None:intergenic | 35.0% | |
| CTCAAGTTTACTTCTCTTCT+TGG | - | chr5.2:72310810-72310829 | None:intergenic | 35.0% | |
| GAAAACCAACAATGTTGAGT+TGG | + | chr5.2:72309869-72309888 | MS.gene98531:CDS | 35.0% | |
| GAAATGAACTTCCATTTACC+TGG | - | chr5.2:72310500-72310519 | None:intergenic | 35.0% | |
| GTGCAATTGATTACTGACAA+TGG | + | chr5.2:72309648-72309667 | MS.gene98531:CDS | 35.0% | |
| TACCAATATCTTCCAACATG+AGG | - | chr5.2:72309758-72309777 | None:intergenic | 35.0% | |
| TCATACTGAATGGTTAACAG+GGG | + | chr5.2:72310937-72310956 | MS.gene98531:CDS | 35.0% | |
| TTGGGATCTTTCTCAATATC+TGG | - | chr5.2:72310329-72310348 | None:intergenic | 35.0% | |
| ! | AGAACAAACCTCACATCTTT+TGG | + | chr5.2:72309706-72309725 | MS.gene98531:CDS | 35.0% |
| !! | GAGTGATTTTGTTGATGAGA+TGG | + | chr5.2:72309611-72309630 | MS.gene98531:CDS | 35.0% |
| !! | TTTTTGGTGAATTCTACTGC+TGG | + | chr5.2:72309519-72309538 | MS.gene98531:CDS | 35.0% |
| !!! | TGTTGGTTTTCTTCCTCATT+AGG | - | chr5.2:72309860-72309879 | None:intergenic | 35.0% |
| AAAGATCCCAAATTGCTGAG+AGG | + | chr5.2:72310338-72310357 | MS.gene98531:CDS | 40.0% | |
| AACCAAACTCAGCACTTTGA+TGG | - | chr5.2:72310641-72310660 | None:intergenic | 40.0% | |
| AACTCCGGATTTGACACTAA+TGG | + | chr5.2:72310615-72310634 | MS.gene98531:CDS | 40.0% | |
| AGAGTCAAAGACTGGAGAAA+TGG | + | chr5.2:72309575-72309594 | MS.gene98531:CDS | 40.0% | |
| ATGAGCCTATAGTGAACACA+AGG | + | chr5.2:72311059-72311078 | MS.gene98531:CDS | 40.0% | |
| ATGCAAACCTCTCAGCAATT+TGG | - | chr5.2:72310348-72310367 | None:intergenic | 40.0% | |
| ATGGCCATTAGTGTCAAATC+CGG | - | chr5.2:72310622-72310641 | None:intergenic | 40.0% | |
| ATGTAATGAAGTGGCAGACT+TGG | + | chr5.2:72310391-72310410 | MS.gene98531:intron | 40.0% | |
| ATTCTTAGCACGTCAACAAG+AGG | - | chr5.2:72310101-72310120 | None:intergenic | 40.0% | |
| CAAAACTGTCTCCAGGTAAA+TGG | + | chr5.2:72310486-72310505 | MS.gene98531:intron | 40.0% | |
| CATATCGGTCTTTCAAAGCT+TGG | - | chr5.2:72310871-72310890 | None:intergenic | 40.0% | |
| CATGCAATGGATGATGAAGT+TGG | - | chr5.2:72310265-72310284 | None:intergenic | 40.0% | |
| GAATTATGGAGCAGAAACTC+CGG | + | chr5.2:72310600-72310619 | MS.gene98531:CDS | 40.0% | |
| GACCTCATGTTGGAAGATAT+TGG | + | chr5.2:72309753-72309772 | MS.gene98531:CDS | 40.0% | |
| GCATATATTTCACCCATTGC+AGG | - | chr5.2:72310143-72310162 | None:intergenic | 40.0% | |
| GGAAGCAACTATGTTTATGC+TGG | + | chr5.2:72309669-72309688 | MS.gene98531:CDS | 40.0% | |
| GTTGAGGTCCAAGTACAATA+AGG | + | chr5.2:72309992-72310011 | MS.gene98531:CDS | 40.0% | |
| TCTTGTTGACGTGCTAAGAA+TGG | + | chr5.2:72310100-72310119 | MS.gene98531:CDS | 40.0% | |
| TGAGCCTATAGTGAACACAA+GGG | + | chr5.2:72311060-72311079 | MS.gene98531:CDS | 40.0% | |
| TGCAAACCTCTCAGCAATTT+GGG | - | chr5.2:72310347-72310366 | None:intergenic | 40.0% | |
| TGGTTAAACATGGAGTCACA+AGG | + | chr5.2:72309889-72309908 | MS.gene98531:CDS | 40.0% | |
| TTAGGCTCAAAGCAAATGTG+TGG | - | chr5.2:72309842-72309861 | None:intergenic | 40.0% | |
| TTGTTCCTTCGCATTATCCA+TGG | - | chr5.2:72310168-72310187 | None:intergenic | 40.0% | |
| ! | AGACTTGGTTACAACTCAGT+TGG | + | chr5.2:72310406-72310425 | MS.gene98531:intron | 40.0% |
| ! | ATCAAGTTGCCAATGCAAGT+GGG | + | chr5.2:72311032-72311051 | MS.gene98531:CDS | 40.0% |
| ! | CATTTGCTTTGAGCCTAATG+AGG | + | chr5.2:72309844-72309863 | MS.gene98531:CDS | 40.0% |
| ! | GAACACAAGGGCTAGTATTA+GGG | + | chr5.2:72311072-72311091 | MS.gene98531:CDS | 40.0% |
| ! | GACTTGGTTACAACTCAGTT+GGG | + | chr5.2:72310407-72310426 | MS.gene98531:intron | 40.0% |
| ! | TGAACACAAGGGCTAGTATT+AGG | + | chr5.2:72311071-72311090 | MS.gene98531:CDS | 40.0% |
| !! | AGTTTGGTTTGTAGTGCTTC+AGG | + | chr5.2:72310652-72310671 | MS.gene98531:CDS | 40.0% |
| !! | TGTGTATTTTTGCAGCTGAG+TGG | + | chr5.2:72310572-72310591 | MS.gene98531:intron | 40.0% |
| ACACTGCATAGACCTCATGT+TGG | + | chr5.2:72309743-72309762 | MS.gene98531:CDS | 45.0% | |
| ACTCCACACTCTTAAGTCCA+TGG | + | chr5.2:72310073-72310092 | MS.gene98531:CDS | 45.0% | |
| AGGCGTGCATGATGACTATT+TGG | + | chr5.2:72310437-72310456 | MS.gene98531:intron | 45.0% | |
| CAACTCAGTTGGGACAATAC+AGG | + | chr5.2:72310417-72310436 | MS.gene98531:intron | 45.0% | |
| CATGGAGTCCAAAAGATGTG+AGG | - | chr5.2:72309717-72309736 | None:intergenic | 45.0% | |
| CGTGCATGATGACTATTTGG+AGG | + | chr5.2:72310440-72310459 | MS.gene98531:intron | 45.0% | |
| CTAGCCCTTGTGTTCACTAT+AGG | - | chr5.2:72311067-72311086 | None:intergenic | 45.0% | |
| CTCATTAACCCCACTTGCAT+TGG | - | chr5.2:72311044-72311063 | None:intergenic | 45.0% | |
| GCATCAGAAGTTGCAAGAGT+TGG | + | chr5.2:72310829-72310848 | MS.gene98531:CDS | 45.0% | |
| GGGTGAAATATATGCAGCCA+TGG | + | chr5.2:72310148-72310167 | MS.gene98531:CDS | 45.0% | |
| TAAGGAAGCTAAAGGTAGGC+AGG | + | chr5.2:72310010-72310029 | MS.gene98531:CDS | 45.0% | |
| TAGTAACCAGCAGCATGCAA+TGG | - | chr5.2:72310278-72310297 | None:intergenic | 45.0% | |
| TATTAGGGCAGAACGAGCAA+AGG | + | chr5.2:72311087-72311106 | MS.gene98531:CDS | 45.0% | |
| TCTATGCAGTGTGCAACACA+TGG | - | chr5.2:72309735-72309754 | None:intergenic | 45.0% | |
| TGAATGGTTAACAGGGGAGA+TGG | + | chr5.2:72310943-72310962 | MS.gene98531:CDS | 45.0% | |
| TGAGATGGGTGAGCAAAATG+TGG | + | chr5.2:72309626-72309645 | MS.gene98531:CDS | 45.0% | |
| TTGGCTGCAAGGGTAAACTA+TGG | + | chr5.2:72309441-72309460 | MS.gene98531:CDS | 45.0% | |
| TTTACCCTTGCAGCCAAATG+AGG | - | chr5.2:72309438-72309457 | None:intergenic | 45.0% | |
| ! | GATCAAGTTGCCAATGCAAG+TGG | + | chr5.2:72311031-72311050 | MS.gene98531:CDS | 45.0% |
| ! | GCTTCTGAAGAGTCAAAGAC+TGG | + | chr5.2:72309567-72309586 | MS.gene98531:CDS | 45.0% |
| ! | GTGCACTTCTGCCATCATTT+TGG | + | chr5.2:72310042-72310061 | MS.gene98531:CDS | 45.0% |
| ! | TCAAGTTGCCAATGCAAGTG+GGG | + | chr5.2:72311033-72311052 | MS.gene98531:CDS | 45.0% |
| ! | TTTTCGGTCTGTCCAACCAT+CGG | - | chr5.2:72309481-72309500 | None:intergenic | 45.0% |
| !! | CAAAAGGGGTGTTCTCTTGT+AGG | + | chr5.2:72309804-72309823 | MS.gene98531:CDS | 45.0% |
| !! | GCTGAGTGGTGGATGAATTA+TGG | + | chr5.2:72310586-72310605 | MS.gene98531:intron | 45.0% |
| !! | GTATTTTTGCAGCTGAGTGG+TGG | + | chr5.2:72310575-72310594 | MS.gene98531:intron | 45.0% |
| AACAGGGGAGATGGAAGAGA+TGG | + | chr5.2:72310952-72310971 | MS.gene98531:CDS | 50.0% | |
| ACAGGGGAGATGGAAGAGAT+GGG | + | chr5.2:72310953-72310972 | MS.gene98531:CDS | 50.0% | |
| CATCATCCATTGCATGCTGC+TGG | + | chr5.2:72310269-72310288 | MS.gene98531:CDS | 50.0% | |
| GATGGTTGGACAGACCGAAA+AGG | + | chr5.2:72309480-72309499 | MS.gene98531:CDS | 50.0% | |
| GCTCGATTATGTCCGATGGT+TGG | + | chr5.2:72309466-72309485 | MS.gene98531:CDS | 50.0% | |
| GGATGCTCGATTATGTCCGA+TGG | + | chr5.2:72309462-72309481 | MS.gene98531:CDS | 50.0% | |
| GTGCCATGGACTTAAGAGTG+TGG | - | chr5.2:72310079-72310098 | None:intergenic | 50.0% | |
| TGCAGCCATGGATAATGCGA+AGG | + | chr5.2:72310160-72310179 | MS.gene98531:CDS | 50.0% | |
| TTGGAGGAAAGGCAGCAGTA+AGG | + | chr5.2:72310456-72310475 | MS.gene98531:intron | 50.0% | |
| !! | GGCCATCAAAGTGCTGAGTT+TGG | + | chr5.2:72310636-72310655 | MS.gene98531:CDS | 50.0% |
| CTGCGGTCAAAACTGTCTCC+AGG | + | chr5.2:72310479-72310498 | MS.gene98531:intron | 55.0% | |
| CTTCAGGATGTGAGCGCAAC+TGG | + | chr5.2:72310668-72310687 | MS.gene98531:CDS | 55.0% | |
| GAAAGGCAGCAGTAAGGCTG+CGG | + | chr5.2:72310462-72310481 | MS.gene98531:intron | 55.0% | |
| GGAGATGGAAGAGATGGGAG+AGG | + | chr5.2:72310958-72310977 | MS.gene98531:CDS | 55.0% | |
| GGAGCCTCATTTGGCTGCAA+GGG | + | chr5.2:72309431-72309450 | MS.gene98531:CDS | 55.0% | |
| TGGAGCCTCATTTGGCTGCA+AGG | + | chr5.2:72309430-72309449 | MS.gene98531:CDS | 55.0% | |
| !! | CACGTCAACAAGAGGTGCCA+TGG | - | chr5.2:72310093-72310112 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 72309426 | 72311270 | 72309426 | ID=MS.gene98531 |
| chr5.2 | mRNA | 72309426 | 72311270 | 72309426 | ID=MS.gene98531.t1;Parent=MS.gene98531 |
| chr5.2 | exon | 72309426 | 72310359 | 72309426 | ID=MS.gene98531.t1.exon1;Parent=MS.gene98531.t1 |
| chr5.2 | CDS | 72309426 | 72310359 | 72309426 | ID=cds.MS.gene98531.t1;Parent=MS.gene98531.t1 |
| chr5.2 | exon | 72310587 | 72310705 | 72310587 | ID=MS.gene98531.t1.exon2;Parent=MS.gene98531.t1 |
| chr5.2 | CDS | 72310587 | 72310705 | 72310587 | ID=cds.MS.gene98531.t1;Parent=MS.gene98531.t1 |
| chr5.2 | exon | 72310800 | 72311270 | 72310800 | ID=MS.gene98531.t1.exon3;Parent=MS.gene98531.t1 |
| chr5.2 | CDS | 72310800 | 72311270 | 72310800 | ID=cds.MS.gene98531.t1;Parent=MS.gene98531.t1 |
| Gene Sequence |
| Protein sequence |
