AlfalfaGEDB | MS.gene98656

M. sativa cultivar XinJiangDaYe / MS.gene98656

KEGG: K10601
GO: -
PFAM: PF12678.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98656.t1	KEH30648.1	92	501	23	3	1	490	1	495	3.70E-246	860.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98656.t1	Q9LW77	71.4	413	103	5	1	399	1	412	1.9e-153	543.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98656.t1	A0A072UNL4	92.0	501	23	3	1	490	1	495	2.7e-246	860.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene31164	MS.gene98656	PPI
MS.gene98656	MS.gene052128	PPI
MS.gene98656	MS.gene30950	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98656.t1	MTR_4g077800	92.016	501	23	3	1	490	1	495	0.0	903
MS.gene98656.t1	MTR_4g077800	92.041	490	22	3	1	479	1	484	0.0	883
MS.gene98656.t1	MTR_5g007710	72.817	504	109	7	1	482	1	498	0.0	715
MS.gene98656.t1	MTR_5g007710	79.703	404	69	3	1	393	1	402	0.0	662
MS.gene98656.t1	MTR_4g077703	96.250	80	3	0	401	480	25	104	9.54e-49	163

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98656.t1	AT3G16090	71.429	413	103	5	1	399	1	412	0.0	590
MS.gene98656.t1	AT1G65040	66.746	421	126	4	1	407	1	421	0.0	574
MS.gene98656.t1	AT1G65040	63.658	421	116	5	1	407	1	398	0.0	535
MS.gene98656.t1	AT1G65040	63.844	307	97	4	115	407	44	350	4.90e-136	398
MS.gene98656.t1	AT1G65040	59.736	303	85	5	119	407	1	280	2.18e-119	353
MS.gene98656.t1	AT1G65040	64.463	242	72	4	180	407	1	242	1.85e-103	311
MS.gene98656.t1	AT1G65040	66.960	227	63	3	177	391	24	250	7.25e-103	308
MS.gene98656.t1	AT4G25230	24.865	370	214	11	4	319	20	379	1.04e-14	77.0
MS.gene98656.t1	AT4G25230	24.865	370	214	11	4	319	20	379	1.04e-14	77.0
MS.gene98656.t1	AT4G25230	24.865	370	214	11	4	319	20	379	1.04e-14	77.0

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Find 107 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAACAACTGCTACG+GGG	0.697725	4.4:-59467720	MS.gene98656:CDS
AAACCATTGCCGGATAAAAC+TGG	0.409243	4.4:+59469993	None:intergenic
AAATGGAACAACTGCTACGG+GGG	0.559604	4.4:-59467719	MS.gene98656:CDS
AACCACTGATCTTTGAACCG+GGG	0.627402	4.4:+59465663	None:intergenic
AACTGAGGTTGGCGATGGGG+TGG	0.547346	4.4:-59466499	MS.gene98656:CDS
AACTTGAGACAACACAGACA+CGG	0.677279	4.4:+59469679	None:intergenic
AAGAAGCACCAAACTGATCT+TGG	0.399595	4.4:+59469958	None:intergenic
AAGAGAACAGGGGAAGGCAC+TGG	0.518999	4.4:-59466534	MS.gene98656:intron
AAGCAGTTTGTGATCCCTGG+TGG	0.673279	4.4:-59465583	MS.gene98656:CDS
AAGCGCCATCAAGAAGAAGA+AGG	0.554091	4.4:+59469633	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTACTTGGAAATACCAA+AGG	-	chr4.4:59468110-59468129	MS.gene98656:intron	30.0%
ACTAAATGCAAGAACATGTA+AGG	-	chr4.4:59467013-59467032	MS.gene98656:intron	30.0%
ACTATTGCACTTTGTATATG+CGG	-	chr4.4:59468267-59468286	MS.gene98656:intron	30.0%
AGGACTAATCAGATTATTCA+AGG	-	chr4.4:59466819-59466838	MS.gene98656:intron	30.0%
ATGAAGTTTAAATCATGCGA+GGG	+	chr4.4:59466530-59466549	None:intergenic	30.0%
ATGATATGTAATAGCCAAAG+TGG	+	chr4.4:59465466-59465485	None:intergenic	30.0%
ATGTACTTGGAAATACCAAA+GGG	-	chr4.4:59468111-59468130	MS.gene98656:intron	30.0%
ATTACGGAGATTAAGAAAGT+TGG	-	chr4.4:59467940-59467959	MS.gene98656:intron	30.0%
ATTTGGACATTAGCACTATT+TGG	+	chr4.4:59466674-59466693	None:intergenic	30.0%
CAAAGATCATCTTAGATTCA+AGG	+	chr4.4:59469613-59469632	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	59465423	59470095	59465423	ID=MS.gene98656
chr4.4	mRNA	59465423	59470095	59465423	ID=MS.gene98656.t1;Parent=MS.gene98656
chr4.4	exon	59469563	59470095	59469563	ID=MS.gene98656.t1.exon1;Parent=MS.gene98656.t1
chr4.4	CDS	59469563	59470095	59469563	ID=cds.MS.gene98656.t1;Parent=MS.gene98656.t1
chr4.4	exon	59469022	59469198	59469022	ID=MS.gene98656.t1.exon2;Parent=MS.gene98656.t1
chr4.4	CDS	59469022	59469198	59469022	ID=cds.MS.gene98656.t1;Parent=MS.gene98656.t1
chr4.4	exon	59467976	59468125	59467976	ID=MS.gene98656.t1.exon3;Parent=MS.gene98656.t1
chr4.4	CDS	59467976	59468125	59467976	ID=cds.MS.gene98656.t1;Parent=MS.gene98656.t1
chr4.4	exon	59467683	59467858	59467683	ID=MS.gene98656.t1.exon4;Parent=MS.gene98656.t1
chr4.4	CDS	59467683	59467858	59467683	ID=cds.MS.gene98656.t1;Parent=MS.gene98656.t1
chr4.4	exon	59466396	59466546	59466396	ID=MS.gene98656.t1.exon5;Parent=MS.gene98656.t1
chr4.4	CDS	59466396	59466546	59466396	ID=cds.MS.gene98656.t1;Parent=MS.gene98656.t1
chr4.4	exon	59465423	59465708	59465423	ID=MS.gene98656.t1.exon6;Parent=MS.gene98656.t1
chr4.4	CDS	59465423	59465708	59465423	ID=cds.MS.gene98656.t1;Parent=MS.gene98656.t1

Gene Sequence

>MS.gene98656

ATGATGCGGTTGCAGACATATGCTGGTCTTAGTTTAATTGCCACTTTGGCTATTACATATCATGCATTTAACAGCAGAGGCCAGTTTTATCCGGCAATGGTTTATTTAGCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGCTCTAGTCATCATGTGTGTTATGTGGCAGTTAACTAAAAAGGTGTTTCTTGGTTCTCTTCGAGAAGCCGAGGTTGAGAGGCTTAATGAGCAAGCATGGAGGGAGGTTATGGAAATCCTCTTTGCAATTACTATCTTTAGACAGGATTTCTCTATTACATTCCTTGCCATGGTTACGACACTCTTGTTAATCAAGGCTTTGCTTTGGTTGGCTCAGAAGAGAGTAGAGTACATAGAGACTACACCTTCCGTGTCTGTGTTGTCTCAAGTTCGAATCATATCTTTTTTGGGGTTCCTTCTTCTTCTTGATGGCGCTTTTTTGTACAGTTCAGTGAAGCATTTACTAGCAACCAAGCAGGCTTCGGTTTCGATCTTCTTTTCTTTTGAGTAAGACATACTTCTTCCTTTTTTCCCCCTTCTCAAATAGTCAGTGACATTGTTAATTTTACTATGGAAAATTCTCTAACATAATTTCTGGAAGGATGGTAATGCTTTACTCTTATTCTGCTACAAATAGTACATGTTAATATATTAAAAACTCCATTATAGTTGAAAGTTATACGCAGAAAGTTGAGCTTATACACAGTTTCACATGTATAACTGTCTGATTTGATGCTTTCTGTGGTATCCAGAAGTTAAAAACATTTTTGTCAATTTAGAACAATTCTCTTTATAATGTTATAGGAGGTTTGGTTTTAATATAGTTTACTCTTCGCTGTTGTTTTGATATAAATATATGTTTCTATCTCAGGTACATGATACTAGCAACAACAACAGTAGCAATTTTTGTAAAATATATTTTCTATGTCAGTGACATGCTTATGGAGGGGCAATGGGAAAAGAAACCAGTCTTCACGTTTTACTTGGAACTTGTTAGGGGCTTGCTTCACTTGTCTATGTATATGTGCTTCTTTCTGGCAATTTTCATGTAAGTAATCACCTGTGTCTGAGTATTATTCCCTCGCATGATTTAAACTTCATAGCAGTATGTGCACTATAGAATCCATAGTATATGTTGTTTATTTTGAAAGCATTTCAAAAGGTTTTAAAGAGATCAAGTGCCACATTGCTCAGGGTAAAGAGCACTTTGGAGGTTTATAAGCCAAATAGTGCTAATGTCCAAATTTACATGTTTTGACTCATTGAAAGACTTGGTCCTGAATTTTTTGCTAGTAGCCCAGTATGCTTACGTTGTATGAATATTGACAACATATACACATAGGACAGAAATGAAGTTCCCTTAGTACAGCAGGACTAATCAGATTATTCAAGGTCCGAATTAAAAAAATAACATATTGGATTCTAAATATTGATTTTTGGTTCAAATTTATAAAAGTTACACTTACATGTTGCAGGTAAGTTCATGGTTGCATTTAAAAAGCCAGTGGCATGCTTTTATGGGTGGTTAGAATCATTTGAGATTTTAATATTCCCTGAATTTTAGACTAAATGCAAGAACATGTAAGGTTCAGTGTTATTTATTCATGGCTAATAGGAATGATACCCTTGAAGATAGGAAAAGAGAATCAGTTATGTAGGAGCTTCTAATATAATTAGCAGATTATTGTGATAATCTAACTGTCTTTTTTATTTATTGGACATGATACCTGGCTTTGATACGTCTGCTTTGCTCTCAAATATTTTCAACATGATAACTTTATAATTTCATACTTTTTATGCATTTTCAGTAATACTTCTCTTTTTGAGATGTAAGGGAATTGTTTGGTTCACCTGTTTTTTATGCTTTTTTCTCTATCAATCTGATTAAGTATTCCAGCCTTACGGCTTTTGTCTTTACCTTCTGACTTTAATTTGATTTATCAGAAACTATGGTGTTCCTTTGCACTTAATGAGGGAGCTATACGAGACATTTAGGAACTTCAAAGTTCGTATTTCAGATTACCTACGTTATCGTAAGATCACTTCTAACATGAATGATCGGTTTCCAGATGCAACCCCTGAAGAGCTTAATTCGTGAGTTCTAAGATTAGCATTGCATCTATACTTATTACTTTTGTTTTATGCATTTGAATCAATATTTTTAGATATGGCTATGCAGAAATGACGTAACCTGCATCATCTGTCGTGAAGAGATGACTACTGCAAAGAAGCTTCTATGCGGTCTTCTTTTCATGTTCATTGCCTCCGATCATGGCTAGAGCGGCAGCATACTTGCCCTACCTGCAGAGCACTGGTTGTCCCATCAGAAAATGGAACAACTGCTACGGGGGGACAGCAAAGACCACAGTCAGATGCTCATCGACAAGGTAATCACATGATCAACAACTACTATAGTTAAACATTATTCATTAACCTAAAAAACATGACAAACTACTACCTCCGTCCCTAAATATAGGAGCCTTTTGCAAAAATTACGGAGATTAAGAAAGTTGGTTGTAGTATTAAATTTGTATATAATTACTATTGTTTTTACAATTTTATCCTTAAGAGAGAGTTAATTTATGTTTTCAACATAATATTTATTTTTGATTGAAGAAAAAGATGCAAAATAAATAAGGGTATGTTGGTAAAGAAATAATTAATGTACTTGGAAATACCAAAGGGGTCTTATAATAAGGGACAATTTTTTTTCTCAGAAGGGTCTTATAATTAGGGACGGAGGTAGTATATTATTTCTAGGATACGGTGCTTTAGAGCAAAAAATGAAGAAATATAGTTGGAAGTATGATCCTGACAAACTATTGCACTTTGTATATGCGGTGCACCTTTCCAAACAGTTGCCTGCTATTTTATAAATTTTCTTAATTTCAACCCTACAAAAAAAATGTGAGCTCTTTGTTTTACCACTTGCAAAAAGTTCCCGTTAATTTTTTTTATTCATAATTTCATGTGAAGTACGTAAAAATACTCGTTGCTTAACTTCTGTGTTGAGACTCTTGAGAGTCTCACATTGATTGTGTTATGACCTGAAAAAATGTTTATAAGTGAGCAACATCCCTTCCCTTACAAGTCAATTTTGTAGGATTTAGTTAGGCTAAATTCAAATTTTTAGATGATATTAGAGCCTATCCTAGAATCATTAGGCTACCCGTAGTCACTTGGCTCACACTCAACTTCAAGATGTCCAGTCTTGGTTGTGATGGGGTGTGTTGAGAGTCTCATATTGAATGTGATATGACTTGAAAAAGTATTCATAAGCCGTGGACATCTCTAACCTTACGAGCTGGTTTTGTGGAGTTGAGTTAAGTCTAACCAAATTCTAAAATATTCGTACTTTTTTTGGGGTTCATTCACACAACTTACATGTTTAAATTATTTTTGAATGGGGAAATTTGATTACTTTAATCTGGAATATCACCCAGGGCCAGCGAGAACAAGGCTTGATTATACTTATTATATTTAAGTATTTTCTTATTTTAATACTAACCTCGAAAGAGAACAGGGGAAGGCACTGGAAGCTCAGCTCAAACTGAGGTTGGCGATGGGGTGGCTTGTGATAATTTGAGTCGGCATCAAGCAAGACTTCAAGCTGCAGCAGCAGCAGCTTCAATATATGAGAAGTCTTATGTTTACCCTTCTCCAACTTTTGCATGGTAAGCAATCTATCATGCCAATATGCCTCTTTTCTATAGTTACTGAAAAACTCAATTTCATGCGTCTCTCTCATCTTATGAAAAATGGAAAAGGTGGGTTCAAAGTGGATTGTACTGGATGTAAAATGAGATGCTAAGCAAAACTCTTAAATTAATAACGGCGACACGTCTTCTGTTTTTGCTTGAAAACAAATAAGAAAAGTGTCCTTCTGATTACTGCTTGAAGAGGAAAATACATAGAGCGATTCTATCTAGAATGAGGCTTATTACTTTTAGAATCTGGATTTAAATTGTAGGATAGGATATGTTTCTATGCAGTGAAATGTTTGGTTTATTCGATTGTTGTTCCTAAATTAAGATTGTTTCCTTTCTCTTTAAATGTTAAATCATGAAAACAACCTAACTCTACTTTTTGACGCTTTGTCATGGGAAGAATTAATGAACTGAACAATAAGATTTGTATAGTAAAGATGATACAAGAACTATTCCTTGAATCTAAGATGATCTTTGTTCACGAGGTGTCAGCTAGTGATAAGAGTTTGACCTTGTAACTTCAAGAAACAAAGTTTAATCCCTAGTTTAACCCCCCCGGAAACAGTTGTAAATGGTCATTAATGTAACTTTGATAATAACAACTAATAAAACATCTTTAATCTAAGACTGTTGTCTAATTTCTCAAACTTACAGCTCCCCTGGCTACACTCTTTATCCCCCGGTTCAAAGATCAGTGGTTCAATCATCTAATAATGCTGAGCTTGATGGAGAACAAGTTTCCAGTGAGCAAGCACAAAAGCAGTTTGTGATCCCTGGTGGACCAATGAATGCATCCTCGTCTCCAGTGCAAAGCTTCTATGTTCCACCATCTCAAACACATGCAGCTCACATGACTTATGGAGAGGGATCCCAGCTGGGAGCTCAAACAAAACTCCAGAACGAGGTACAATTGCATTCTTTGTGGCTGTTTACTTTCTAA

Protein sequence

>MS.gene98656.t1

MMRLQTYAGLSLIATLAITYHAFNSRGQFYPAMVYLATSKISLVLLLNMALVIMCVMWQLTKKVFLGSLREAEVERLNEQAWREVMEILFAITIFRQDFSITFLAMVTTLLLIKALLWLAQKRVEYIETTPSVSVLSQVRIISFLGFLLLLDGAFLYSSVKHLLATKQASVSIFFSFEYMILATTTVAIFVKYIFYVSDMLMEGQWEKKPVFTFYLELVRGLLHLSMYMCFFLAIFINYGVPLHLMRELYETFRNFKVRISDYLRYRKITSNMNDRFPDATPEELNSDDYCKEASMRSSFHVHCLRSWLERQHTCPTCRALVVPSENGTTATGGQQRPQSDAHRQGEGTGSSAQTEVGDGVACDNLSRHQARLQAAAAAASIYEKSYVYPSPTFACSPGYTLYPPVQRSVVQSSNNAELDGEQVSSEQAQKQFVIPGGPMNASSSPVQSFYVPPSQTHAAHMTYGEGSQLGAQTKLQNEVQLHSLWLFTF