AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98827

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98827.t1 MTR_6g084120 92.169 166 4 1 1 166 107 263 1.32e-111 318
MS.gene98827.t1 MTR_7g053410 61.062 113 43 1 17 129 286 397 7.63e-39 138
MS.gene98827.t1 MTR_7g053410 61.062 113 43 1 17 129 286 397 1.08e-38 138
MS.gene98827.t1 MTR_5g037250 54.918 122 44 3 10 121 64 184 3.29e-37 128
MS.gene98827.t1 MTR_8g012290 61.538 104 40 0 26 129 268 371 3.43e-37 133
MS.gene98827.t1 MTR_8g012290 61.538 104 40 0 26 129 268 371 3.43e-37 133
MS.gene98827.t1 MTR_8g065740 58.559 111 44 1 18 128 276 384 6.63e-36 129
MS.gene98827.t1 MTR_3g498825 64.894 94 32 1 40 132 138 231 7.48e-36 127
MS.gene98827.t1 MTR_5g048860 63.366 101 36 1 30 129 345 445 1.98e-35 129
MS.gene98827.t1 MTR_4g070320 54.472 123 42 2 18 126 98 220 3.35e-35 125
MS.gene98827.t1 MTR_3g116770 69.318 88 25 1 45 132 187 272 1.21e-34 125
MS.gene98827.t1 MTR_3g116770 69.318 88 25 1 45 132 187 272 1.23e-34 125
MS.gene98827.t1 MTR_8g099880 62.766 94 34 1 40 132 136 229 1.51e-34 123
MS.gene98827.t1 MTR_1g017350 60.000 100 39 1 30 128 240 339 3.39e-34 124
MS.gene98827.t1 MTR_1g017350 60.000 100 39 1 30 128 240 339 3.91e-34 124
MS.gene98827.t1 MTR_1g017350 60.000 100 39 1 30 128 240 339 3.95e-34 124
MS.gene98827.t1 MTR_1g017350 60.000 100 39 1 30 128 240 339 3.97e-34 124
MS.gene98827.t1 MTR_1g059270 67.500 80 26 0 47 126 158 237 1.15e-33 119
MS.gene98827.t1 MTR_8g062240 58.586 99 31 1 47 135 149 247 1.15e-33 120
MS.gene98827.t1 MTR_1g059270 67.500 80 26 0 47 126 158 237 3.83e-33 120
MS.gene98827.t1 MTR_7g092510 67.500 80 26 0 47 126 171 250 4.78e-32 117
MS.gene98827.t1 MTR_4g131160 62.121 66 24 1 49 114 196 260 1.30e-18 82.0
MS.gene98827.t1 MTR_4g131160 62.121 66 24 1 49 114 199 263 1.59e-18 81.6
MS.gene98827.t1 MTR_1g080890 59.091 66 26 1 49 114 193 257 1.85e-17 78.2
MS.gene98827.t1 MTR_1g069155 45.570 79 42 1 36 114 304 381 3.41e-15 72.4
MS.gene98827.t1 MTR_1g019240 44.304 79 43 1 37 115 73 150 3.81e-14 68.6
MS.gene98827.t1 MTR_4g033295 49.231 65 33 0 49 113 118 182 7.16e-14 66.6
MS.gene98827.t1 MTR_5g005110 43.529 85 47 1 29 113 204 287 8.71e-14 67.8
MS.gene98827.t1 MTR_4g033295 47.761 67 34 1 49 114 118 184 1.18e-13 65.9
MS.gene98827.t1 MTR_4g065870 49.231 65 33 0 49 113 355 419 1.61e-13 67.4
MS.gene98827.t1 MTR_1g018090 50.769 65 31 1 49 113 274 337 3.65e-13 66.2
MS.gene98827.t1 MTR_1g070870 57.576 66 27 1 49 114 120 184 5.95e-13 65.1
MS.gene98827.t1 MTR_1g070870 57.576 66 27 1 49 114 123 187 6.26e-13 65.1
MS.gene98827.t1 MTR_4g065870 48.387 62 32 0 49 110 355 416 8.94e-13 65.5
MS.gene98827.t1 MTR_7g099540 43.038 79 43 2 36 114 240 316 1.49e-12 64.7
MS.gene98827.t1 MTR_1g084980 45.312 64 34 1 51 114 464 526 1.63e-12 64.7
MS.gene98827.t1 MTR_2g098310 46.154 65 35 0 49 113 332 396 1.91e-12 64.3
MS.gene98827.t1 MTR_3g103030 51.562 64 30 1 50 113 230 292 1.98e-12 63.9
MS.gene98827.t1 MTR_2g098310 46.875 64 34 0 49 112 332 395 5.76e-12 63.2
MS.gene98827.t1 MTR_5g017040 48.485 66 31 2 60 123 116 180 8.17e-12 62.4
MS.gene98827.t1 MTR_7g092540 46.269 67 36 0 49 115 243 309 1.01e-11 62.0
MS.gene98827.t1 MTR_7g099540 43.038 79 43 2 36 114 240 316 1.32e-11 62.0
MS.gene98827.t1 MTR_1g052470 44.776 67 37 0 49 115 298 364 1.64e-11 61.6
MS.gene98827.t1 MTR_7g092540 46.154 65 35 0 49 113 243 307 1.90e-11 61.2
MS.gene98827.t1 MTR_3g028520 44.615 65 36 0 49 113 322 386 2.90e-11 60.8
MS.gene98827.t1 MTR_3g027650 44.615 65 36 0 49 113 322 386 2.90e-11 60.8
MS.gene98827.t1 MTR_3g449770 48.387 62 31 1 51 112 311 371 6.22e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98827.t1 AT1G73830 71.831 142 33 3 26 166 126 261 3.03e-61 190
MS.gene98827.t1 AT1G18400 72.951 122 29 2 46 166 142 260 6.73e-61 189
MS.gene98827.t1 AT1G73830 71.831 142 32 4 26 166 126 260 4.34e-59 184
MS.gene98827.t1 AT1G18400 84.615 91 14 0 46 136 142 232 5.55e-55 174
MS.gene98827.t1 AT1G25330 60.769 130 49 2 39 166 94 223 7.88e-49 157
MS.gene98827.t1 AT5G50915 62.264 106 39 1 28 132 115 220 5.71e-40 136
MS.gene98827.t1 AT5G50915 62.264 106 39 1 28 132 115 220 5.71e-40 136
MS.gene98827.t1 AT5G50915 58.824 119 47 2 15 132 103 220 1.02e-39 136
MS.gene98827.t1 AT5G50915 58.824 119 47 2 15 132 103 220 1.02e-39 136
MS.gene98827.t1 AT3G07340 58.197 122 45 1 11 126 214 335 1.19e-38 137
MS.gene98827.t1 AT3G07340 58.197 122 45 1 11 126 214 335 1.25e-38 136
MS.gene98827.t1 AT5G48560 70.115 87 25 1 41 126 293 379 3.10e-36 130
MS.gene98827.t1 AT5G48560 70.115 87 25 1 41 126 293 379 5.18e-36 130
MS.gene98827.t1 AT1G26260 69.880 83 25 0 47 129 170 252 9.86e-36 127
MS.gene98827.t1 AT1G26260 69.880 83 25 0 47 129 199 281 2.34e-35 126
MS.gene98827.t1 AT1G68920 71.951 82 23 0 47 128 300 381 2.80e-35 128
MS.gene98827.t1 AT1G68920 71.951 82 23 0 47 128 301 382 2.80e-35 128
MS.gene98827.t1 AT1G68920 71.951 82 23 0 47 128 301 382 2.80e-35 128
MS.gene98827.t1 AT1G68920 71.951 82 23 0 47 128 301 382 2.80e-35 128
MS.gene98827.t1 AT1G26260 69.880 83 25 0 47 129 221 303 2.92e-35 127
MS.gene98827.t1 AT1G26260 69.880 83 25 0 47 129 221 303 2.92e-35 127
MS.gene98827.t1 AT1G26260 69.880 83 25 0 47 129 221 303 2.92e-35 127
MS.gene98827.t1 AT1G26260 69.880 83 25 0 47 129 221 303 2.92e-35 127
MS.gene98827.t1 AT3G23690 65.517 87 30 0 41 127 183 269 7.04e-35 125
MS.gene98827.t1 AT1G59640 67.901 81 26 0 41 121 128 208 8.79e-35 122
MS.gene98827.t1 AT4G34530 62.105 95 34 1 38 132 161 253 7.79e-34 122
MS.gene98827.t1 AT3G57800 52.756 127 48 2 39 165 194 308 1.07e-33 122
MS.gene98827.t1 AT4G36540 55.046 109 47 1 28 136 120 226 1.71e-33 120
MS.gene98827.t1 AT4G36540 55.046 109 47 1 28 136 120 226 1.72e-33 120
MS.gene98827.t1 AT1G59640 64.444 90 27 1 37 121 119 208 2.94e-33 120
MS.gene98827.t1 AT1G10120 60.825 97 36 1 34 130 191 285 3.69e-33 120
MS.gene98827.t1 AT1G10120 60.825 97 36 1 34 130 191 285 3.69e-33 120
MS.gene98827.t1 AT5G62610 69.737 76 23 0 41 116 145 220 4.62e-33 119
MS.gene98827.t1 AT5G62610 69.737 76 23 0 41 116 145 220 4.62e-33 119
MS.gene98827.t1 AT2G42300 66.250 80 27 0 47 126 183 262 1.52e-32 117
MS.gene98827.t1 AT2G42300 49.593 123 52 3 47 164 183 300 2.65e-32 117
MS.gene98827.t1 AT2G18300 70.130 77 23 0 40 116 176 252 1.75e-30 113
MS.gene98827.t1 AT2G18300 70.130 77 23 0 40 116 176 252 1.81e-30 113
MS.gene98827.t1 AT2G18300 70.130 77 23 0 40 116 176 252 3.57e-30 112
MS.gene98827.t1 AT3G57800 38.506 174 48 3 39 165 194 355 8.65e-25 99.4
MS.gene98827.t1 AT2G24260 60.606 66 25 1 49 114 35 99 7.60e-19 80.9
MS.gene98827.t1 AT4G30980 62.121 66 24 1 49 114 130 194 1.36e-18 81.3
MS.gene98827.t1 AT4G30980 62.121 66 24 1 49 114 178 242 1.94e-18 81.3
MS.gene98827.t1 AT5G58010 62.121 66 24 1 49 114 99 163 2.48e-18 80.1
MS.gene98827.t1 AT2G24260 60.606 66 25 1 49 114 138 202 3.93e-18 80.1
MS.gene98827.t1 AT2G42300 75.610 41 10 0 47 87 183 223 2.61e-15 70.9
MS.gene98827.t1 AT2G42300 75.610 41 10 0 47 87 183 223 2.61e-15 70.9
MS.gene98827.t1 AT2G42300 75.610 41 10 0 47 87 183 223 3.66e-15 70.9
MS.gene98827.t1 AT1G09530 40.800 125 59 5 9 123 287 406 1.64e-14 70.5
MS.gene98827.t1 AT1G09530 40.800 125 59 5 9 123 287 406 1.64e-14 70.5
MS.gene98827.t1 AT1G09530 40.800 125 59 5 9 123 287 406 1.64e-14 70.5
MS.gene98827.t1 AT1G09530 40.800 125 59 5 9 123 287 406 1.64e-14 70.5
MS.gene98827.t1 AT1G09530 40.800 125 59 5 9 123 287 406 1.64e-14 70.5
MS.gene98827.t1 AT1G09530 40.800 125 59 5 9 123 287 406 1.64e-14 70.5
MS.gene98827.t1 AT2G20180 42.857 77 43 1 38 114 196 271 3.20e-14 69.7
MS.gene98827.t1 AT2G20180 42.857 77 43 1 38 114 196 271 3.20e-14 69.7
MS.gene98827.t1 AT2G20180 42.857 77 43 1 38 114 196 271 3.20e-14 69.7
MS.gene98827.t1 AT2G20180 42.857 77 43 1 38 114 267 342 4.97e-14 68.9
MS.gene98827.t1 AT2G20180 42.857 77 43 1 38 114 267 342 4.97e-14 68.9
MS.gene98827.t1 AT2G20180 42.857 77 43 1 38 114 267 342 4.97e-14 68.9
MS.gene98827.t1 AT2G20180 42.857 77 43 1 38 114 267 342 4.97e-14 68.9
MS.gene98827.t1 AT2G46970 40.964 83 43 2 37 114 206 287 1.54e-13 67.4
MS.gene98827.t1 AT2G46970 40.964 83 43 2 37 114 175 256 2.05e-13 67.0
MS.gene98827.t1 AT2G46970 40.964 83 43 2 37 114 184 265 2.07e-13 67.0
MS.gene98827.t1 AT2G20180 43.836 73 40 1 38 110 267 338 5.39e-13 65.9
MS.gene98827.t1 AT4G33880 40.777 103 59 2 12 113 228 329 6.15e-13 65.9
MS.gene98827.t1 AT1G27740 46.988 83 38 3 35 113 150 230 1.24e-12 64.3
MS.gene98827.t1 AT1G03040 56.061 66 28 1 49 114 139 203 2.46e-12 63.5
MS.gene98827.t1 AT4G02590 56.061 66 28 1 49 114 83 147 2.64e-12 63.2
MS.gene98827.t1 AT1G03040 56.061 66 28 1 49 114 144 208 2.96e-12 63.5
MS.gene98827.t1 AT4G02590 56.061 66 28 1 49 114 146 210 3.37e-12 63.5
MS.gene98827.t1 AT4G02590 56.061 66 28 1 49 114 146 210 3.37e-12 63.5
MS.gene98827.t1 AT4G00050 42.683 82 46 1 32 113 88 168 3.41e-12 63.2
MS.gene98827.t1 AT1G51140 46.875 64 34 0 49 112 304 367 3.69e-12 63.5
MS.gene98827.t1 AT4G28800 37.000 100 54 3 14 113 222 312 3.86e-12 63.5
MS.gene98827.t1 AT4G28815 37.037 81 46 2 52 128 71 150 4.48e-12 62.4
MS.gene98827.t1 AT1G03040 56.061 66 28 1 49 114 144 208 5.39e-12 62.8
MS.gene98827.t1 AT4G28790 46.875 64 33 1 51 114 273 335 5.81e-12 63.2
MS.gene98827.t1 AT4G09180 46.154 65 35 0 49 113 184 248 5.98e-12 62.4
MS.gene98827.t1 AT4G00050 42.683 82 46 1 32 113 190 270 6.60e-12 62.8
MS.gene98827.t1 AT1G35460 46.154 65 35 0 49 113 181 245 6.85e-12 62.0
MS.gene98827.t1 AT4G28815 37.037 81 46 2 52 128 147 226 7.83e-12 62.4
MS.gene98827.t1 AT4G00050 42.683 82 46 1 32 113 190 270 8.14e-12 62.4
MS.gene98827.t1 AT2G43140 50.000 64 32 0 49 112 134 197 1.13e-11 60.8
MS.gene98827.t1 AT4G28800 35.780 109 60 4 14 121 234 333 1.25e-11 62.0
MS.gene98827.t1 AT2G43140 50.000 64 32 0 49 112 231 294 1.57e-11 61.6
MS.gene98827.t1 AT2G14760 47.692 65 33 1 49 113 237 300 2.33e-11 61.2
MS.gene98827.t1 AT4G28790 45.455 66 35 1 51 116 273 337 2.77e-11 60.8
MS.gene98827.t1 AT2G42280 43.077 65 37 0 49 113 279 343 3.41e-11 60.8
MS.gene98827.t1 AT2G42280 45.455 66 34 1 49 112 279 344 3.84e-11 60.5

Find 30 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGAAGAAATTTACAAGTT+TGG 0.255043 6.1:-73802674 None:intergenic
TATTGTTCCAGGATGTTATA+AGG 0.305489 6.1:+73803348 MS.gene98827:CDS
TGCTTGCAGAATATTGTTCC+AGG 0.427390 6.1:+73803337 MS.gene98827:CDS
ACTCCTGCAGTTTCTGAAAG+TGG 0.440216 6.1:+73802643 MS.gene98827:CDS
CTTCCACTTTCAGAAACTGC+AGG 0.466079 6.1:-73802646 None:intergenic
TTGCTTGCTTTCAACCAACT+TGG 0.490280 6.1:+73804276 MS.gene98827:CDS
TAGCAAGGTATAAGAGAGAA+GGG 0.498236 6.1:+73804243 MS.gene98827:CDS
TTGATTTGTGGCAGAGAGCA+AGG 0.504432 6.1:+73804201 MS.gene98827:intron
TTTCAATGGTTGCAGACCAT+GGG 0.515237 6.1:+73803460 MS.gene98827:intron
AGGTATAAGAGAGAAGGGTA+TGG 0.517402 6.1:+73804248 MS.gene98827:CDS
TTAGCAAGGTATAAGAGAGA+AGG 0.520461 6.1:+73804242 MS.gene98827:CDS
TGAAGTCAAAGTGGCCAAGT+TGG 0.520695 6.1:-73804290 None:intergenic
TAATTTCAGAGTGGTGGAAG+AGG 0.521842 6.1:+73802778 MS.gene98827:intron
TATGATTAATTTCAGAGTGG+TGG 0.522541 6.1:+73802772 MS.gene98827:intron
TAGTCACAGTCTAGCAGAAA+GGG 0.525871 6.1:+73802885 MS.gene98827:CDS
TATAAGAGAGAAGGGTATGG+AGG 0.527385 6.1:+73804251 MS.gene98827:CDS
CATGGGAATGGCAGTAATGT+TGG 0.527745 6.1:+73803477 MS.gene98827:CDS
ATATTAACCTTATAACATCC+TGG 0.539111 6.1:-73803355 None:intergenic
TGGTTATTCAGGTTAGAAGA+GGG 0.541611 6.1:+73803293 MS.gene98827:intron
ATAGTCACAGTCTAGCAGAA+AGG 0.561228 6.1:+73802884 MS.gene98827:CDS
ATCCAAAATTGAAGTCAAAG+TGG 0.565182 6.1:-73804299 None:intergenic
GCAGAGAGCAAGGGCATCTG+AGG 0.566936 6.1:+73804211 MS.gene98827:intron
TTGGTTATTCAGGTTAGAAG+AGG 0.567622 6.1:+73803292 MS.gene98827:intron
TGATTTGTGGCAGAGAGCAA+GGG 0.569667 6.1:+73804202 MS.gene98827:intron
GTTCATGTTAGAGCAAGAAG+AGG 0.589317 6.1:+73802850 MS.gene98827:CDS
ATGGTTGCAGACCATGGGAA+TGG 0.592994 6.1:+73803465 MS.gene98827:intron
CTGAGGCAAAAGAGTTAGCA+AGG 0.595828 6.1:+73804228 MS.gene98827:CDS
AACAGAAGAAGAGAAAGCAA+AGG 0.600831 6.1:+73802822 MS.gene98827:CDS
CAACATTACTGCCATTCCCA+TGG 0.603267 6.1:-73803476 None:intergenic
AGATGATCTAGAAACAATGC+AGG 0.618754 6.1:+73803719 MS.gene98827:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTATTTTAATTAAA+AGG - chr6.1:73803386-73803405 None:intergenic 0.0%
!! AATTAATGTTAATTTATGTT+TGG + chr6.1:73803628-73803647 MS.gene98827:intron 10.0%
!! GATGAAATTAAATTATTAAA+TGG + chr6.1:73802735-73802754 MS.gene98827:intron 10.0%
!!! AATCAAATTGTTTTTATATA+AGG + chr6.1:73803008-73803027 MS.gene98827:intron 10.0%
!!! CATTAATTATTATTATTTTG+AGG - chr6.1:73803616-73803635 None:intergenic 10.0%
!!! TCTATGATTTTTTTTTTTTT+TGG + chr6.1:73803273-73803292 MS.gene98827:intron 10.0%
!!! TGTTTATTTTTTTTAATGAA+AGG + chr6.1:73803974-73803993 MS.gene98827:intron 10.0%
!!! TTATTTATTTATTTGATTTG+TGG + chr6.1:73804189-73804208 MS.gene98827:intron 10.0%
!! AGTAATATTTATTTATCTCT+AGG + chr6.1:73803547-73803566 MS.gene98827:intron 15.0%
!! ATATTATTATATGAATTGAG+AGG - chr6.1:73803847-73803866 None:intergenic 15.0%
!!! TATTTTTGTTTTTGTTTCAA+TGG + chr6.1:73803446-73803465 MS.gene98827:intron 15.0%
!!! TTTTTTTTTTTTGGTTATTC+AGG + chr6.1:73803282-73803301 MS.gene98827:intron 15.0%
!! AAATTGGACAAAATTTATGT+AGG - chr6.1:73804050-73804069 None:intergenic 20.0%
!! AAGTTAAAATTCATTAGAGT+TGG + chr6.1:73803888-73803907 MS.gene98827:intron 20.0%
!! CACTTAATTAACCTATATTT+AGG - chr6.1:73802919-73802938 None:intergenic 20.0%
!! GACATTTAATTCTATTCATA+AGG - chr6.1:73803197-73803216 None:intergenic 20.0%
!!! ATCTATTTCTAAAAGTTTCA+TGG + chr6.1:73803746-73803765 MS.gene98827:intron 20.0%
!!! TAAGCTATTTCTATGATAAA+TGG + chr6.1:73802977-73802996 MS.gene98827:intron 20.0%
! ATATTAACCTTATAACATCC+TGG - chr6.1:73803358-73803377 None:intergenic 25.0%
! GGGTATAATTTCCTAAATAT+AGG + chr6.1:73802905-73802924 MS.gene98827:intron 25.0%
! GTAGAAGAAATTTACAAGTT+TGG - chr6.1:73802677-73802696 None:intergenic 25.0%
! TTCTATGATTAATTTCAGAG+TGG + chr6.1:73802769-73802788 MS.gene98827:intron 25.0%
! TTGTTCATGATTGATGTATA+TGG + chr6.1:73803239-73803258 MS.gene98827:intron 25.0%
ACCAAAATAGGAGCTAAAAT+TGG - chr6.1:73804066-73804085 None:intergenic 30.0%
ATATATGCTAACTGTTGTGA+TGG + chr6.1:73803863-73803882 MS.gene98827:intron 30.0%
TAGACCTATAGAACCAAAAT+AGG - chr6.1:73804078-73804097 None:intergenic 30.0%
TATAACATGCTCACTTTGTA+TGG + chr6.1:73803802-73803821 MS.gene98827:intron 30.0%
TATGATTAATTTCAGAGTGG+TGG + chr6.1:73802772-73802791 MS.gene98827:intron 30.0%
TATTGTTCCAGGATGTTATA+AGG + chr6.1:73803348-73803367 MS.gene98827:CDS 30.0%
!!! TCCAATTTTAGCTCCTATTT+TGG + chr6.1:73804062-73804081 MS.gene98827:intron 30.0%
AACAGAAGAAGAGAAAGCAA+AGG + chr6.1:73802822-73802841 MS.gene98827:CDS 35.0%
AGATGATCTAGAAACAATGC+AGG + chr6.1:73803719-73803738 MS.gene98827:CDS 35.0%
CTCACTTTGTATGGTTGTTA+GGG + chr6.1:73803811-73803830 MS.gene98827:intron 35.0%
TAGCAAGGTATAAGAGAGAA+GGG + chr6.1:73804243-73804262 MS.gene98827:CDS 35.0%
TTAGCAAGGTATAAGAGAGA+AGG + chr6.1:73804242-73804261 MS.gene98827:CDS 35.0%
! TGGTTATTCAGGTTAGAAGA+GGG + chr6.1:73803293-73803312 MS.gene98827:intron 35.0%
! TTGGTTATTCAGGTTAGAAG+AGG + chr6.1:73803292-73803311 MS.gene98827:intron 35.0%
!! GATTTTCAAGAGACTAGTTC+TGG + chr6.1:73802613-73802632 MS.gene98827:CDS 35.0%
!! GTTGTTTTCATAAGCTACAC+TGG + chr6.1:73803036-73803055 MS.gene98827:intron 35.0%
!!! AGCTCCTATTTTGGTTCTAT+AGG + chr6.1:73804071-73804090 MS.gene98827:intron 35.0%
AGGTATAAGAGAGAAGGGTA+TGG + chr6.1:73804248-73804267 MS.gene98827:CDS 40.0%
ATAGTCACAGTCTAGCAGAA+AGG + chr6.1:73802884-73802903 MS.gene98827:CDS 40.0%
GCTCACTTTGTATGGTTGTT+AGG + chr6.1:73803810-73803829 MS.gene98827:intron 40.0%
GTTCATGTTAGAGCAAGAAG+AGG + chr6.1:73802850-73802869 MS.gene98827:CDS 40.0%
TAGTCACAGTCTAGCAGAAA+GGG + chr6.1:73802885-73802904 MS.gene98827:CDS 40.0%
TGCTTGCAGAATATTGTTCC+AGG + chr6.1:73803337-73803356 MS.gene98827:CDS 40.0%
TTGCTTGCTTTCAACCAACT+TGG + chr6.1:73804276-73804295 MS.gene98827:CDS 40.0%
TTTCAATGGTTGCAGACCAT+GGG + chr6.1:73803460-73803479 MS.gene98827:intron 40.0%
! TAATTTCAGAGTGGTGGAAG+AGG + chr6.1:73802778-73802797 MS.gene98827:intron 40.0%
! TATAAGAGAGAAGGGTATGG+AGG + chr6.1:73804251-73804270 MS.gene98827:CDS 40.0%
CAACATTACTGCCATTCCCA+TGG - chr6.1:73803479-73803498 None:intergenic 45.0%
CATGGGAATGGCAGTAATGT+TGG + chr6.1:73803477-73803496 MS.gene98827:CDS 45.0%
CTGAGGCAAAAGAGTTAGCA+AGG + chr6.1:73804228-73804247 MS.gene98827:CDS 45.0%
CTTCCACTTTCAGAAACTGC+AGG - chr6.1:73802649-73802668 None:intergenic 45.0%
GTTTCAATGGTTGCAGACCA+TGG + chr6.1:73803459-73803478 MS.gene98827:intron 45.0%
! ACTCCTGCAGTTTCTGAAAG+TGG + chr6.1:73802643-73802662 MS.gene98827:CDS 45.0%
! TGATTTGTGGCAGAGAGCAA+GGG + chr6.1:73804202-73804221 MS.gene98827:intron 45.0%
!! TTGATTTGTGGCAGAGAGCA+AGG + chr6.1:73804201-73804220 MS.gene98827:intron 45.0%
!!! TTAAAAAACTTTTTTTAAAA+AGG - chr6.1:73804121-73804140 None:intergenic 5.0%
ATGGTTGCAGACCATGGGAA+TGG + chr6.1:73803465-73803484 MS.gene98827:intron 50.0%
!! GCAGAGAGCAAGGGCATCTG+AGG + chr6.1:73804211-73804230 MS.gene98827:intron 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 73802607 73804307 73802607 ID=MS.gene98827
chr6.1 mRNA 73802607 73804307 73802607 ID=MS.gene98827.t1;Parent=MS.gene98827
chr6.1 exon 73802607 73802681 73802607 ID=MS.gene98827.t1.exon1;Parent=MS.gene98827.t1
chr6.1 CDS 73802607 73802681 73802607 ID=cds.MS.gene98827.t1;Parent=MS.gene98827.t1
chr6.1 exon 73802787 73802906 73802787 ID=MS.gene98827.t1.exon2;Parent=MS.gene98827.t1
chr6.1 CDS 73802787 73802906 73802787 ID=cds.MS.gene98827.t1;Parent=MS.gene98827.t1
chr6.1 exon 73803304 73803369 73803304 ID=MS.gene98827.t1.exon3;Parent=MS.gene98827.t1
chr6.1 CDS 73803304 73803369 73803304 ID=cds.MS.gene98827.t1;Parent=MS.gene98827.t1
chr6.1 exon 73803475 73803543 73803475 ID=MS.gene98827.t1.exon4;Parent=MS.gene98827.t1
chr6.1 CDS 73803475 73803543 73803475 ID=cds.MS.gene98827.t1;Parent=MS.gene98827.t1
chr6.1 exon 73803663 73803740 73803663 ID=MS.gene98827.t1.exon5;Parent=MS.gene98827.t1
chr6.1 CDS 73803663 73803740 73803663 ID=cds.MS.gene98827.t1;Parent=MS.gene98827.t1
chr6.1 exon 73804215 73804307 73804215 ID=MS.gene98827.t1.exon6;Parent=MS.gene98827.t1
chr6.1 CDS 73804215 73804307 73804215 ID=cds.MS.gene98827.t1;Parent=MS.gene98827.t1
Gene Sequence

>MS.gene98827

ATGATGGATTTTCAAGAGACTAGTTCTGGAAATTCAACTCCTGCAGTTTCTGAAAGTGGAAGCAAATCCAAACTTGTAAATTTCTTCTACTTGTTTTTTTCATTTTATTCTTCATTTTTTGTGATTGTGATGAAATTAAATTATTAAATGGTTTTGTTATTTTTCTATGATTAATTTCAGAGTGGTGGAAGAGGAAAACGAGTGAAAAGCTATGAAACAGAAGAAGAGAAAGCAAAGGAAGTTGTTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGTCACAGTCTAGCAGAAAGGGTATAATTTCCTAAATATAGGTTAATTAAGTGTTTATAGTATAATCATTTATTATATAAGTGTTTATGCATAAGCTATTTCTATGATAAATGGTAAAATAAAATCAAATTGTTTTTATATAAGGTATAAGTTGTTTTCATAAGCTACACTGGTGAGCTTATTAAAATAAGTTAAAAACAATTTATGAATATGACATAAGTTGATTTCATAAGCTCTTCAAAATAGTCTTGCACATGTTTATATAGCAGTAGATAAATTCAAATAAGTCAGTACGAAAAGACAATAATCCTTATGAATAGAATTAAATGTCTTCATCAAATTTTCTTCTATCTTTGTTCATGATTGATGTATATGGACTAATAAATATCTATGATTTTTTTTTTTTTTGGTTATTCAGGTTAGAAGAGGGAAAATCAATGAGAAATTGAAGTGCTTGCAGAATATTGTTCCAGGATGTTATAAGGTTAATATATGTTCCTTTTAATTAAAATAAAAAATAAAAAATCACAATTGTGTTTAATTTCATACTGTCAAAATCTTATTTTTGTTTTTGTTTCAATGGTTGCAGACCATGGGAATGGCAGTAATGTTGGATGAAATCATAAACTATGTTCAGTCTTTGCAGCATCAAGTAGAAGTAAGTAATATTTATTTATCTCTAGGAAAATATAGTTTTAAAATATATTTAATTAATGTTAATTTATCACCTCAAAATAATAATAATTAATGTTAATTTATGTTTGGCTATTTTTGCAGTTTCTTTCTTTGAAGCTTACTGCAGCAAGTACTTATTATGATTTCAATTCAGAGACAGATGATCTAGAAACAATGCAGGTATAATCTATTTCTAAAAGTTTCATGGTTTTATTCATATATAAATATGCTCATATTCATGTATAACATGCTCACTTTGTATGGTTGTTAGGGTGCATGAAAACCTCTCAATTCATATAATAATATATGCTAACTGTTGTGATGGATAAGTTAAAATTCATTAGAGTTGGTGAATATGAAATTAAGTAGTTGATAGTTGATGAAATTAATTAGAAACAATTATTATATTTATATGTTTATTTTTTTTAATGAAAGGTTAAATATGTTTTTAGTTTCTATAAAATTCACAAATTTTTAAGTTTATTTCCTACATAAATTTTGTCCAATTTTAGCTCCTATTTTGGTTCTATAGGTCTAAATATTGAGACTAAATAACTCCTTTTTAAAAAAAGTTTTTTAATTAAATACTAAAATTAGACAAAATATATGTAAAATACTCTTCTTTTATTTATTTATTTATTTGATTTGTGGCAGAGAGCAAGGGCATCTGAGGCAAAAGAGTTAGCAAGGTATAAGAGAGAAGGGTATGGAGGAATTGCTTGCTTTCAACCAACTTGGCCACTTTGA
Protein sequence

>MS.gene98827.t1

MMDFQETSSGNSTPAVSESGSKSKLSGGRGKRVKSYETEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTYYDFNSETDDLETMQRARASEAKELARYKREGYGGIACFQPTWPL