AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051676


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051676.t1 MTR_1g017770 97.465 434 11 0 1 434 1 434 0.0 855
MS.gene051676.t1 MTR_5g015210 63.882 407 141 4 28 434 51 451 0.0 529
MS.gene051676.t1 MTR_8g092870 29.412 408 236 13 45 417 10 400 4.01e-35 135
MS.gene051676.t1 MTR_4g085720 26.382 398 259 7 36 413 5 388 8.83e-32 125
MS.gene051676.t1 MTR_5g077510 27.792 403 237 9 45 413 35 417 7.80e-30 120
MS.gene051676.t1 MTR_7g106340 28.095 420 260 11 44 431 7 416 8.91e-28 114
MS.gene051676.t1 MTR_4g063800 26.166 386 257 9 45 415 255 627 9.68e-28 116
MS.gene051676.t1 MTR_4g485520 27.616 344 223 8 45 372 105 438 1.82e-27 114
MS.gene051676.t1 MTR_4g485520 27.616 344 223 8 45 372 273 606 2.77e-27 115
MS.gene051676.t1 MTR_3g065080 26.161 409 259 10 31 413 26 417 3.09e-27 113
MS.gene051676.t1 MTR_3g095730 27.456 397 256 11 45 417 13 401 3.97e-27 112
MS.gene051676.t1 MTR_6g071340 26.142 394 263 9 45 413 5 395 2.16e-26 110
MS.gene051676.t1 MTR_1g094215 27.273 363 231 9 45 385 64 415 3.48e-26 110
MS.gene051676.t1 MTR_3g096370 29.262 393 244 11 45 413 10 392 3.51e-26 109
MS.gene051676.t1 MTR_1g094215 27.273 363 231 9 45 385 247 598 7.45e-26 110
MS.gene051676.t1 MTR_7g078330 26.053 380 247 9 45 408 274 635 7.45e-26 110
MS.gene051676.t1 MTR_5g048050 26.142 394 263 9 45 413 25 415 1.66e-24 105
MS.gene051676.t1 MTR_2g062480 65.476 84 9 1 130 213 50 113 4.74e-24 97.1
MS.gene051676.t1 MTR_7g059405 28.060 335 218 10 45 367 264 587 4.36e-23 102
MS.gene051676.t1 MTR_2g018010 27.778 306 194 6 28 312 274 573 8.43e-22 98.6
MS.gene051676.t1 MTR_2g087350 27.094 406 278 11 39 431 1 401 3.84e-20 92.4
MS.gene051676.t1 MTR_7g116600 31.064 235 141 6 46 264 79 308 4.46e-19 89.7
MS.gene051676.t1 MTR_7g053260 28.755 233 148 5 46 264 79 307 1.21e-18 88.2
MS.gene051676.t1 MTR_1g056910 27.470 415 249 18 39 421 1 395 1.80e-18 87.4
MS.gene051676.t1 MTR_5g083030 24.242 363 228 10 44 372 292 641 2.58e-18 87.8
MS.gene051676.t1 MTR_1g056870 27.040 429 255 18 41 421 4 422 4.64e-18 86.3
MS.gene051676.t1 MTR_1g056880 26.824 425 261 14 41 421 4 422 6.10e-18 85.9
MS.gene051676.t1 MTR_4g107010 28.526 312 188 10 46 334 281 580 8.64e-18 86.3
MS.gene051676.t1 MTR_3g078160 26.590 346 211 10 22 341 254 582 1.52e-17 85.5
MS.gene051676.t1 MTR_3g078160 26.590 346 211 10 22 341 254 582 1.68e-17 85.5
MS.gene051676.t1 MTR_4g028960 29.956 227 115 8 45 237 280 496 9.14e-17 83.2
MS.gene051676.t1 MTR_1g056840 25.768 423 240 14 42 421 5 396 1.21e-16 82.0
MS.gene051676.t1 MTR_5g034440 27.961 304 191 9 49 333 284 578 3.36e-16 81.3
MS.gene051676.t1 MTR_4g091880 26.829 328 192 9 44 364 4 290 9.67e-16 78.6
MS.gene051676.t1 MTR_2g011140 26.149 348 230 11 51 387 21 352 1.29e-15 78.6
MS.gene051676.t1 MTR_3g085610 50.000 66 33 0 46 111 281 346 7.16e-15 77.4
MS.gene051676.t1 MTR_3g078160 28.070 285 178 7 22 285 254 532 8.28e-15 76.6
MS.gene051676.t1 MTR_4g091880 26.979 341 203 12 44 364 4 318 2.18e-14 74.7
MS.gene051676.t1 MTR_1g069845 46.970 66 35 0 46 111 125 190 2.59e-13 72.4
MS.gene051676.t1 MTR_1g093965 47.692 65 34 0 58 122 1 65 3.20e-13 68.6
MS.gene051676.t1 MTR_1g093995 47.692 65 34 0 58 122 1 65 3.55e-13 68.6
MS.gene051676.t1 MTR_1g069845 46.970 66 35 0 46 111 246 311 3.56e-13 72.0
MS.gene051676.t1 MTR_1g069845 46.970 66 35 0 46 111 242 307 3.84e-13 72.0
MS.gene051676.t1 MTR_1g079450 24.542 273 183 7 45 303 63 326 5.34e-13 70.9
MS.gene051676.t1 MTR_3g466220 47.761 67 35 0 45 111 233 299 1.37e-12 70.1
MS.gene051676.t1 MTR_3g466220 47.761 67 35 0 45 111 212 278 1.44e-12 70.1
MS.gene051676.t1 MTR_4g051515 47.887 71 34 2 44 111 5 75 3.92e-12 68.2
MS.gene051676.t1 MTR_3g115670 28.033 239 133 12 42 263 27 243 6.04e-12 68.2
MS.gene051676.t1 MTR_8g080280 45.455 66 36 0 46 111 283 348 8.00e-12 67.8
MS.gene051676.t1 MTR_8g077205 45.455 66 36 0 46 111 276 341 1.05e-11 67.4
MS.gene051676.t1 MTR_7g097020 45.455 66 35 1 46 111 243 307 1.05e-11 67.4
MS.gene051676.t1 MTR_8g077205 45.455 66 36 0 46 111 164 229 1.19e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051676.t1 AT3G49810 62.408 407 147 4 28 434 48 448 0.0 520
MS.gene051676.t1 AT5G65920 59.330 418 162 5 19 434 33 444 1.05e-174 496
MS.gene051676.t1 AT5G65920 59.330 418 162 5 19 434 33 444 1.05e-174 496
MS.gene051676.t1 AT3G19380 32.718 379 238 10 36 399 5 381 1.53e-41 152
MS.gene051676.t1 AT1G49780 30.886 395 254 8 36 413 5 397 1.07e-36 139
MS.gene051676.t1 AT3G18710 27.873 409 257 13 37 419 4 400 2.15e-33 130
MS.gene051676.t1 AT5G64660 27.700 426 222 15 45 417 10 402 4.70e-32 126
MS.gene051676.t1 AT3G54850 28.235 340 217 8 45 368 248 576 1.01e-30 125
MS.gene051676.t1 AT2G35930 26.506 415 267 11 39 429 6 406 3.45e-28 115
MS.gene051676.t1 AT1G23030 26.741 359 234 11 26 366 218 565 5.10e-28 117
MS.gene051676.t1 AT3G46510 25.323 387 259 9 45 415 256 628 8.67e-27 113
MS.gene051676.t1 AT1G66160 26.494 385 253 11 45 413 33 403 1.49e-26 111
MS.gene051676.t1 AT1G71020 27.273 341 220 9 45 367 95 425 2.32e-26 111
MS.gene051676.t1 AT1G71020 27.273 341 220 9 45 367 243 573 4.67e-26 111
MS.gene051676.t1 AT5G37490 26.531 392 253 9 45 413 31 410 5.60e-26 109
MS.gene051676.t1 AT5G42340 30.081 246 161 6 45 282 290 532 4.71e-25 108
MS.gene051676.t1 AT2G28830 27.273 308 198 4 46 335 185 484 6.44e-25 107
MS.gene051676.t1 AT5G09800 26.434 401 253 16 42 417 8 391 3.19e-23 101
MS.gene051676.t1 AT3G52450 25.952 420 260 12 39 413 1 414 3.25e-22 98.6
MS.gene051676.t1 AT1G29340 27.055 292 188 6 40 312 300 585 9.00e-21 95.5
MS.gene051676.t1 AT1G66160 24.156 385 246 12 45 413 33 387 4.97e-17 83.2
MS.gene051676.t1 AT5G01830 30.244 205 125 4 44 234 273 473 6.57e-17 83.6
MS.gene051676.t1 AT3G07360 28.146 302 187 10 46 331 75 362 9.88e-17 82.4
MS.gene051676.t1 AT4G21350 25.076 331 229 7 44 367 4 322 1.38e-16 81.3
MS.gene051676.t1 AT1G67530 54.545 66 30 0 46 111 273 338 1.29e-15 79.7
MS.gene051676.t1 AT1G67530 54.545 66 30 0 46 111 273 338 1.29e-15 79.7
MS.gene051676.t1 AT1G67530 54.545 66 30 0 46 111 273 338 1.29e-15 79.7
MS.gene051676.t1 AT1G67530 54.545 66 30 0 46 111 273 338 1.39e-15 79.3
MS.gene051676.t1 AT1G60190 28.214 280 173 10 51 310 284 555 2.21e-14 75.9
MS.gene051676.t1 AT1G24330 51.515 66 32 0 46 111 276 341 3.28e-14 75.5
MS.gene051676.t1 AT1G24330 51.515 66 32 0 46 111 276 341 3.28e-14 75.5
MS.gene051676.t1 AT3G11840 39.167 120 65 5 44 157 9 126 7.41e-14 73.6
MS.gene051676.t1 AT1G27910 51.515 66 32 0 46 111 280 345 8.83e-14 73.9
MS.gene051676.t1 AT1G10560 25.231 325 199 11 49 339 292 606 3.39e-13 72.0
MS.gene051676.t1 AT2G23140 47.619 63 33 0 49 111 237 299 1.13e-12 70.5
MS.gene051676.t1 AT2G23140 47.619 63 33 0 49 111 234 296 1.17e-12 70.5
MS.gene051676.t1 AT2G23140 47.619 63 33 0 49 111 234 296 1.17e-12 70.5
MS.gene051676.t1 AT2G23140 47.619 63 33 0 49 111 45 107 1.38e-12 70.1
MS.gene051676.t1 AT2G23140 47.619 63 33 0 49 111 45 107 1.38e-12 70.1
MS.gene051676.t1 AT3G54790 42.647 68 39 0 45 112 202 269 2.15e-12 69.7
MS.gene051676.t1 AT3G54790 42.647 68 39 0 45 112 238 305 2.41e-12 69.3
MS.gene051676.t1 AT3G54790 42.647 68 39 0 45 112 238 305 2.41e-12 69.3
MS.gene051676.t1 AT3G02840 23.954 263 184 7 163 412 92 351 5.45e-12 67.4
MS.gene051676.t1 AT5G65500 41.096 73 43 0 43 115 713 785 3.04e-11 65.9
MS.gene051676.t1 AT5G65500 41.096 73 43 0 43 115 721 793 3.08e-11 65.9

Find 68 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACACTCGTTATTCAAATT+TGG 0.155411 1.3:+4958055 None:intergenic
GACCAAGTGAAAACCATTTA+AGG 0.159560 1.3:+4958761 None:intergenic
TATCGGTATCATTGTGAATT+TGG 0.172886 1.3:-4958413 MS.gene051676:CDS
CATCCAAATGGGATATTAAT+TGG 0.260923 1.3:-4958172 MS.gene051676:CDS
TGTTTCAAGTTTGAGTCTTT+TGG 0.266950 1.3:-4958227 MS.gene051676:CDS
ATAGATCCAACATCCTTAAA+TGG 0.267794 1.3:-4958774 MS.gene051676:CDS
GGTTTGGTTTGTTCTTTGTT+AGG 0.271110 1.3:-4958469 MS.gene051676:CDS
TCAAAGCTCTTAAGGATCTT+AGG 0.281536 1.3:-4958549 MS.gene051676:CDS
GCCTTTGAAGCACATTCTTC+AGG 0.321820 1.3:+4957863 None:intergenic
AACACTTGAAGAAGGGAAAT+TGG 0.332578 1.3:-4957999 MS.gene051676:CDS
GAAGATTTCTGTTTCAAAAC+AGG 0.345157 1.3:+4957785 None:intergenic
ATTGATTGAAATGTTGTTGA+TGG 0.345273 1.3:-4958281 MS.gene051676:CDS
CATAACTCTTGCATTGTTGT+TGG 0.349959 1.3:+4958727 None:intergenic
GGAAAATGGCGGGGTTGGTT+TGG 0.353204 1.3:-4958485 MS.gene051676:CDS
TGCATTGGTTCAAGTGAGAT+TGG 0.353424 1.3:+4958832 None:intergenic
GGATGTTCAAGGAAGAGTTT+TGG 0.360543 1.3:-4958614 MS.gene051676:CDS
CAACAACAATGCAAGAGTTA+TGG 0.362659 1.3:-4958726 MS.gene051676:CDS
AGACCAATTAATATCCCATT+TGG 0.368703 1.3:+4958169 None:intergenic
AAGGATGTTGGATCTATCAT+AGG 0.371646 1.3:+4958780 None:intergenic
AAATTTGAATAACGAGTGTT+TGG 0.375150 1.3:-4958053 MS.gene051676:CDS
TGACCTGTGCAAAGTGTAAC+AGG 0.377472 1.3:+4958805 None:intergenic
ACCACATTAGGTATAATGTT+TGG 0.378726 1.3:+4957962 None:intergenic
GCATCCAGCTAAAGTTTCAT+TGG 0.383621 1.3:-4958356 MS.gene051676:CDS
AGGAAAACAGTGTTGGAAAA+TGG 0.387358 1.3:-4958499 MS.gene051676:CDS
AACAACAATGCAAGAGTTAT+GGG 0.388335 1.3:-4958725 MS.gene051676:CDS
TGAGATTAATAATCCTTTGT+TGG 0.392736 1.3:-4958974 MS.gene051676:CDS
GATAGCACTTTACATATTAG+AGG 0.398032 1.3:-4958029 MS.gene051676:CDS
GAGATTAATAATCCTTTGTT+GGG 0.398485 1.3:-4958973 MS.gene051676:CDS
AAAGGCTGTGGAAGCTGGAT+TGG 0.406186 1.3:-4957846 MS.gene051676:CDS
AAGTAGAGTCAAAGCTCTTA+AGG 0.410312 1.3:-4958557 MS.gene051676:CDS
TGAAAACCATTTAAGGATGT+TGG 0.416261 1.3:+4958768 None:intergenic
TTTGGTTGGATTATTGAGAT+TGG 0.418112 1.3:-4958209 MS.gene051676:CDS
GCTTCAAAGGCTGTGGAAGC+TGG 0.429451 1.3:-4957851 MS.gene051676:CDS
TGAAATGTTGTTGATGGAAG+TGG 0.440393 1.3:-4958275 MS.gene051676:CDS
CAATTGTTTGAGAGTGTTGT+TGG 0.445240 1.3:+4958687 None:intergenic
AGAGATAAGAAACATCCAAA+TGG 0.458686 1.3:-4958184 MS.gene051676:CDS
TCAAACAATTGATCTTTACT+TGG 0.459813 1.3:-4958675 MS.gene051676:CDS
TTGTTTCTCATGTTTGTGCT+AGG 0.464535 1.3:-4958519 MS.gene051676:CDS
ATCAACATCTTGACCACATT+AGG 0.469429 1.3:+4957950 None:intergenic
AGTGGAAAGAAATGAAACTA+TGG 0.477086 1.3:-4958257 MS.gene051676:CDS
TGGTTCTCACACAAGTACTT+AGG 0.487678 1.3:-4958655 MS.gene051676:CDS
GTTGTTGATATTATGAATGA+AGG 0.490566 1.3:-4958334 MS.gene051676:CDS
AATTGTTTGAGAGTGTTGTT+GGG 0.500960 1.3:+4958688 None:intergenic
GAGATAAGAAACATCCAAAT+GGG 0.501701 1.3:-4958183 MS.gene051676:CDS
GAGACACTCAAGAAGGTAAA+GGG 0.502037 1.3:-4958583 MS.gene051676:CDS
ATTGGACATATAAACACATA+AGG 0.504104 1.3:+4958850 None:intergenic
AAACAGTGTTGGAAAATGGC+GGG 0.518645 1.3:-4958495 MS.gene051676:CDS
AAGAAGCTTGAGGATGTTCA+AGG 0.520273 1.3:-4958625 MS.gene051676:CDS
GTGTTGGAAAATGGCGGGGT+TGG 0.525268 1.3:-4958490 MS.gene051676:CDS
ACAACCAATGAAACTTTAGC+TGG 0.528214 1.3:+4958352 None:intergenic
GGAGACACTCAAGAAGGTAA+AGG 0.529677 1.3:-4958584 MS.gene051676:CDS
AGTGTAACAGGCTCTTGCAT+TGG 0.532871 1.3:+4958817 None:intergenic
GGTAAAATCTCAATCAATTG+CGG 0.551711 1.3:+4958076 None:intergenic
ACCTGAAGAATGTGCTTCAA+AGG 0.554133 1.3:-4957864 MS.gene051676:CDS
AGAATGTGCTTCAAAGGCTG+TGG 0.559930 1.3:-4957858 MS.gene051676:CDS
GTATTGTCAACACTTGAAGA+AGG 0.568213 1.3:-4958007 MS.gene051676:CDS
TCCAAACATTATACCTAATG+TGG 0.574326 1.3:-4957963 MS.gene051676:CDS
GAGCCTGTTACACTTTGCAC+AGG 0.589911 1.3:-4958808 MS.gene051676:CDS
AGAAGCTCTATGATAAGCAT+AGG 0.590919 1.3:-4958106 MS.gene051676:CDS
GATGTTTCAAAACCCAACAA+AGG 0.598829 1.3:+4958961 None:intergenic
TTGTGCTAGGAAAACAGTGT+TGG 0.603588 1.3:-4958506 MS.gene051676:CDS
TATTGTCAACACTTGAAGAA+GGG 0.604875 1.3:-4958006 MS.gene051676:CDS
AACATTGGAGACACTCAAGA+AGG 0.620353 1.3:-4958590 MS.gene051676:CDS
AACAGTGTTGGAAAATGGCG+GGG 0.621402 1.3:-4958494 MS.gene051676:CDS
GTTGTTGGTTGTGAAGCTAT+CGG 0.633853 1.3:-4958430 MS.gene051676:CDS
AAAACAGTGTTGGAAAATGG+CGG 0.637218 1.3:-4958496 MS.gene051676:CDS
AGGAATGAAGAAGAAGCTTG+AGG 0.637995 1.3:-4958635 MS.gene051676:CDS
TTATTGCTTGTGATTCAGAG+TGG 0.747357 1.3:-4957815 MS.gene051676:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAACACTCGTTATTCAAATT+TGG + chr1.3:4958636-4958655 None:intergenic 25.0%
! AAATTTGAATAACGAGTGTT+TGG - chr1.3:4958635-4958654 MS.gene051676:CDS 25.0%
! ATTGATTGAAATGTTGTTGA+TGG - chr1.3:4958407-4958426 MS.gene051676:CDS 25.0%
! ATTGGACATATAAACACATA+AGG + chr1.3:4957841-4957860 None:intergenic 25.0%
! GAGATTAATAATCCTTTGTT+GGG - chr1.3:4957715-4957734 MS.gene051676:CDS 25.0%
! GTTGTTGATATTATGAATGA+AGG - chr1.3:4958354-4958373 MS.gene051676:CDS 25.0%
! TCAAACAATTGATCTTTACT+TGG - chr1.3:4958013-4958032 MS.gene051676:CDS 25.0%
! TGAGATTAATAATCCTTTGT+TGG - chr1.3:4957714-4957733 MS.gene051676:CDS 25.0%
!! AATTTGCACTGTCAATTTTA+TGG - chr1.3:4958784-4958803 MS.gene051676:CDS 25.0%
!! ATTTGCACTGTCAATTTTAT+GGG - chr1.3:4958785-4958804 MS.gene051676:CDS 25.0%
AACAACAATGCAAGAGTTAT+GGG - chr1.3:4957963-4957982 MS.gene051676:CDS 30.0%
ACCACATTAGGTATAATGTT+TGG + chr1.3:4958729-4958748 None:intergenic 30.0%
AGACCAATTAATATCCCATT+TGG + chr1.3:4958522-4958541 None:intergenic 30.0%
AGAGATAAGAAACATCCAAA+TGG - chr1.3:4958504-4958523 MS.gene051676:CDS 30.0%
AGTGGAAAGAAATGAAACTA+TGG - chr1.3:4958431-4958450 MS.gene051676:CDS 30.0%
ATAGATCCAACATCCTTAAA+TGG - chr1.3:4957914-4957933 MS.gene051676:CDS 30.0%
CATCCAAATGGGATATTAAT+TGG - chr1.3:4958516-4958535 MS.gene051676:CDS 30.0%
GAAGATTTCTGTTTCAAAAC+AGG + chr1.3:4958906-4958925 None:intergenic 30.0%
GAGATAAGAAACATCCAAAT+GGG - chr1.3:4958505-4958524 MS.gene051676:CDS 30.0%
GATAGCACTTTACATATTAG+AGG - chr1.3:4958659-4958678 MS.gene051676:CDS 30.0%
GGTAAAATCTCAATCAATTG+CGG + chr1.3:4958615-4958634 None:intergenic 30.0%
TATCGGTATCATTGTGAATT+TGG - chr1.3:4958275-4958294 MS.gene051676:CDS 30.0%
TATTGTCAACACTTGAAGAA+GGG - chr1.3:4958682-4958701 MS.gene051676:CDS 30.0%
TCCAAACATTATACCTAATG+TGG - chr1.3:4958725-4958744 MS.gene051676:CDS 30.0%
TGAAAACCATTTAAGGATGT+TGG + chr1.3:4957923-4957942 None:intergenic 30.0%
TTTGGTTGGATTATTGAGAT+TGG - chr1.3:4958479-4958498 MS.gene051676:CDS 30.0%
! ATCCTTAAATGGTTTTCACT+TGG - chr1.3:4957925-4957944 MS.gene051676:CDS 30.0%
! TCTTTTACTTCACATGTTGT+TGG - chr1.3:4958243-4958262 MS.gene051676:CDS 30.0%
!! AATTGTTTGAGAGTGTTGTT+GGG + chr1.3:4958003-4958022 None:intergenic 30.0%
!!! GGTTTTGAAACATCTTTCAA+AGG - chr1.3:4957736-4957755 MS.gene051676:CDS 30.0%
!!! TGTTTCAAGTTTGAGTCTTT+TGG - chr1.3:4958461-4958480 MS.gene051676:CDS 30.0%
AACACTTGAAGAAGGGAAAT+TGG - chr1.3:4958689-4958708 MS.gene051676:CDS 35.0%
AAGGATGTTGGATCTATCAT+AGG + chr1.3:4957911-4957930 None:intergenic 35.0%
AAGTAGAGTCAAAGCTCTTA+AGG - chr1.3:4958131-4958150 MS.gene051676:CDS 35.0%
ACAACCAATGAAACTTTAGC+TGG + chr1.3:4958339-4958358 None:intergenic 35.0%
AGAAGCTCTATGATAAGCAT+AGG - chr1.3:4958582-4958601 MS.gene051676:CDS 35.0%
ATCAACATCTTGACCACATT+AGG + chr1.3:4958741-4958760 None:intergenic 35.0%
CAACAACAATGCAAGAGTTA+TGG - chr1.3:4957962-4957981 MS.gene051676:CDS 35.0%
CATAACTCTTGCATTGTTGT+TGG + chr1.3:4957964-4957983 None:intergenic 35.0%
GACCAAGTGAAAACCATTTA+AGG + chr1.3:4957930-4957949 None:intergenic 35.0%
GATGTTTCAAAACCCAACAA+AGG + chr1.3:4957730-4957749 None:intergenic 35.0%
GTATTGTCAACACTTGAAGA+AGG - chr1.3:4958681-4958700 MS.gene051676:CDS 35.0%
TCAAAGCTCTTAAGGATCTT+AGG - chr1.3:4958139-4958158 MS.gene051676:CDS 35.0%
TTATTGCTTGTGATTCAGAG+TGG - chr1.3:4958873-4958892 MS.gene051676:CDS 35.0%
! AAAACAGTGTTGGAAAATGG+CGG - chr1.3:4958192-4958211 MS.gene051676:CDS 35.0%
! AGGAAAACAGTGTTGGAAAA+TGG - chr1.3:4958189-4958208 MS.gene051676:CDS 35.0%
! TCAAGTTTGAGTCTTTTGGT+TGG - chr1.3:4958465-4958484 MS.gene051676:CDS 35.0%
! TGAAATGTTGTTGATGGAAG+TGG - chr1.3:4958413-4958432 MS.gene051676:CDS 35.0%
! TTGTTTCTCATGTTTGTGCT+AGG - chr1.3:4958169-4958188 MS.gene051676:CDS 35.0%
!! CAATTGTTTGAGAGTGTTGT+TGG + chr1.3:4958004-4958023 None:intergenic 35.0%
!! GGTTTGGTTTGTTCTTTGTT+AGG - chr1.3:4958219-4958238 MS.gene051676:CDS 35.0%
!!! AGGAAGAGTTTTGGAAACAT+TGG - chr1.3:4958083-4958102 MS.gene051676:CDS 35.0%
AACATTGGAGACACTCAAGA+AGG - chr1.3:4958098-4958117 MS.gene051676:CDS 40.0%
AAGAAGCTTGAGGATGTTCA+AGG - chr1.3:4958063-4958082 MS.gene051676:CDS 40.0%
ACCTGAAGAATGTGCTTCAA+AGG - chr1.3:4958824-4958843 MS.gene051676:CDS 40.0%
AGGAATGAAGAAGAAGCTTG+AGG - chr1.3:4958053-4958072 MS.gene051676:CDS 40.0%
GAGACACTCAAGAAGGTAAA+GGG - chr1.3:4958105-4958124 MS.gene051676:CDS 40.0%
GCATCCAGCTAAAGTTTCAT+TGG - chr1.3:4958332-4958351 MS.gene051676:CDS 40.0%
TGGTTCTCACACAAGTACTT+AGG - chr1.3:4958033-4958052 MS.gene051676:CDS 40.0%
TTGTGCTAGGAAAACAGTGT+TGG - chr1.3:4958182-4958201 MS.gene051676:CDS 40.0%
! AAACAGTGTTGGAAAATGGC+GGG - chr1.3:4958193-4958212 MS.gene051676:CDS 40.0%
! GGATGTTCAAGGAAGAGTTT+TGG - chr1.3:4958074-4958093 MS.gene051676:CDS 40.0%
! GTTGTTGGTTGTGAAGCTAT+CGG - chr1.3:4958258-4958277 MS.gene051676:CDS 40.0%
!! TGCATTGGTTCAAGTGAGAT+TGG + chr1.3:4957859-4957878 None:intergenic 40.0%
AGAATGTGCTTCAAAGGCTG+TGG - chr1.3:4958830-4958849 MS.gene051676:CDS 45.0%
AGTGTAACAGGCTCTTGCAT+TGG + chr1.3:4957874-4957893 None:intergenic 45.0%
GGAGACACTCAAGAAGGTAA+AGG - chr1.3:4958104-4958123 MS.gene051676:CDS 45.0%
TGACCTGTGCAAAGTGTAAC+AGG + chr1.3:4957886-4957905 None:intergenic 45.0%
! AACAGTGTTGGAAAATGGCG+GGG - chr1.3:4958194-4958213 MS.gene051676:CDS 45.0%
!! GCCTTTGAAGCACATTCTTC+AGG + chr1.3:4958828-4958847 None:intergenic 45.0%
AAAGGCTGTGGAAGCTGGAT+TGG - chr1.3:4958842-4958861 MS.gene051676:CDS 50.0%
GAGCCTGTTACACTTTGCAC+AGG - chr1.3:4957880-4957899 MS.gene051676:CDS 50.0%
GCTTCAAAGGCTGTGGAAGC+TGG - chr1.3:4958837-4958856 MS.gene051676:CDS 55.0%
! GTGTTGGAAAATGGCGGGGT+TGG - chr1.3:4958198-4958217 MS.gene051676:CDS 55.0%
!! GGAAAATGGCGGGGTTGGTT+TGG - chr1.3:4958203-4958222 MS.gene051676:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 4957703 4959007 4957703 ID=MS.gene051676
chr1.3 mRNA 4957703 4959007 4957703 ID=MS.gene051676.t1;Parent=MS.gene051676
chr1.3 exon 4957703 4959007 4957703 ID=MS.gene051676.t1.exon1;Parent=MS.gene051676.t1
chr1.3 CDS 4957703 4959007 4957703 ID=cds.MS.gene051676.t1;Parent=MS.gene051676.t1
Gene Sequence

>MS.gene051676

ATGCTTTCATATGAGATTAATAATCCTTTGTTGGGTTTTGAAACATCTTTCAAAGGTTGTTTTTTTAGTGTCTTAGACACTGAAAAAATAGATCTCAAGTTGATAATTGAAGAGCTTGATTCAATTGATGATGTTCCTTATGTGTTTATATGTCCAATCTCACTTGAACCAATGCAAGAGCCTGTTACACTTTGCACAGGTCAAACCTATGATAGATCCAACATCCTTAAATGGTTTTCACTTGGTCACAAAACATGTCCAACAACAATGCAAGAGTTATGGGATGATTCAATCACTCCCAACAACACTCTCAAACAATTGATCTTTACTTGGTTCTCACACAAGTACTTAGGAATGAAGAAGAAGCTTGAGGATGTTCAAGGAAGAGTTTTGGAAACATTGGAGACACTCAAGAAGGTAAAGGGTCAAAGTAGAGTCAAAGCTCTTAAGGATCTTAGGAAACTTGTTGTTTCTCATGTTTGTGCTAGGAAAACAGTGTTGGAAAATGGCGGGGTTGGTTTGGTTTGTTCTTTGTTAGGTTCTTTTACTTCACATGTTGTTGGTTGTGAAGCTATCGGTATCATTGTGAATTTGGATTTGAGTTTAGAATTGAAGAGAAAGTATCTTATGCATCCAGCTAAAGTTTCATTGGTTGTTGATATTATGAATGAAGGAACTATTGAAACAAAGATGAATTGTGCTAAATTGATTGAAATGTTGTTGATGGAAGTGGAAAGAAATGAAACTATGGTTGAGATTGTTTCAAGTTTGAGTCTTTTGGTTGGATTATTGAGATTGGTGAGAGATAAGAAACATCCAAATGGGATATTAATTGGTCTCACATTGCTTAAAAAAGTATTATGTTGTCATGAATCAATTAGAAGCTCTATGATAAGCATAGGAGCAATTCCGCAATTGATTGAGATTTTACCAAATTTGAATAACGAGTGTTTGGAGATAGCACTTTACATATTAGAGGTATTGTCAACACTTGAAGAAGGGAAATTGGCATTGAAAGAATGTCCAAACATTATACCTAATGTGGTCAAGATGTTGATGAGAGTCTCAGAAAATTGTACACAATTTGCACTGTCAATTTTATGGGCTATTTACAAGCTTGCACCTGAAGAATGTGCTTCAAAGGCTGTGGAAGCTGGATTGGCTTCAAAATTATTGCTTGTGATTCAGAGTGGTTGTAATCCTGTTTTGAAACAGAAATCTTCTGAGTTTTTGAAAATGTGTAGTGTGAATTATTCTACTAGTATTTTTATTTCTAAGTGTATGCTTACTACAACAATACAATGA

Protein sequence

>MS.gene051676.t1

MLSYEINNPLLGFETSFKGCFFSVLDTEKIDLKLIIEELDSIDDVPYVFICPISLEPMQEPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDSITPNNTLKQLIFTWFSHKYLGMKKKLEDVQGRVLETLETLKKVKGQSRVKALKDLRKLVVSHVCARKTVLENGGVGLVCSLLGSFTSHVVGCEAIGIIVNLDLSLELKRKYLMHPAKVSLVVDIMNEGTIETKMNCAKLIEMLLMEVERNETMVEIVSSLSLLVGLLRLVRDKKHPNGILIGLTLLKKVLCCHESIRSSMISIGAIPQLIEILPNLNNECLEIALYILEVLSTLEEGKLALKECPNIIPNVVKMLMRVSENCTQFALSILWAIYKLAPEECASKAVEAGLASKLLLVIQSGCNPVLKQKSSEFLKMCSVNYSTSIFISKCMLTTTIQ