Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98957.t1 | XP_013466543.1 | 96 | 302 | 12 | 0 | 1 | 302 | 60 | 361 | 4.10E-155 | 557.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98957.t1 | Q9LVI4 | 36.4 | 269 | 140 | 9 | 41 | 291 | 97 | 352 | 1.9e-23 | 111.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98957.t1 | G8A016 | 96.0 | 302 | 12 | 0 | 1 | 302 | 60 | 361 | 3.0e-155 | 557.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene98957.t1 | TF | Tify |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050577 | MS.gene98957 | 0.806121 | 9.59E-50 | -1.69E-46 |
| MS.gene053108 | MS.gene98957 | -0.813881 | 2.05E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene98957 | 0.816274 | 6.02E-52 | -1.69E-46 |
| MS.gene056618 | MS.gene98957 | -0.848763 | 4.98E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98957.t1 | MTR_1g031930 | 96.026 | 302 | 12 | 0 | 1 | 302 | 60 | 361 | 0.0 | 589 |
| MS.gene98957.t1 | MTR_1g031930 | 96.610 | 236 | 8 | 0 | 67 | 302 | 65 | 300 | 1.87e-162 | 454 |
| MS.gene98957.t1 | MTR_6g069870 | 32.381 | 315 | 138 | 9 | 16 | 277 | 68 | 360 | 7.69e-30 | 117 |
| MS.gene98957.t1 | MTR_6g069870 | 31.773 | 299 | 129 | 9 | 16 | 261 | 68 | 344 | 2.33e-25 | 103 |
| MS.gene98957.t1 | MTR_2g029260 | 53.571 | 112 | 45 | 1 | 108 | 219 | 5 | 109 | 1.13e-23 | 93.6 |
| MS.gene98957.t1 | MTR_6g069870 | 34.804 | 204 | 102 | 7 | 16 | 214 | 68 | 245 | 1.56e-19 | 87.8 |
| MS.gene98957.t1 | MTR_2g042900 | 30.061 | 163 | 82 | 3 | 113 | 275 | 110 | 240 | 4.29e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98957.t1 | AT3G17860 | 38.554 | 249 | 125 | 8 | 41 | 274 | 64 | 299 | 1.08e-31 | 120 |
| MS.gene98957.t1 | AT3G17860 | 38.554 | 249 | 125 | 8 | 41 | 274 | 64 | 299 | 1.08e-31 | 120 |
| MS.gene98957.t1 | AT3G17860 | 38.554 | 249 | 125 | 8 | 41 | 274 | 84 | 319 | 1.62e-31 | 120 |
| MS.gene98957.t1 | AT3G17860 | 38.554 | 249 | 125 | 8 | 41 | 274 | 97 | 332 | 1.77e-31 | 120 |
| MS.gene98957.t1 | AT1G70700 | 35.156 | 256 | 119 | 10 | 39 | 293 | 58 | 267 | 3.66e-26 | 104 |
| MS.gene98957.t1 | AT1G70700 | 33.594 | 256 | 99 | 8 | 39 | 293 | 58 | 243 | 2.78e-25 | 101 |
| MS.gene98957.t1 | AT1G48500 | 37.755 | 196 | 96 | 5 | 81 | 274 | 118 | 289 | 5.72e-22 | 94.0 |
| MS.gene98957.t1 | AT1G70700 | 34.821 | 224 | 101 | 9 | 39 | 261 | 58 | 237 | 1.27e-21 | 92.4 |
| MS.gene98957.t1 | AT1G48500 | 38.587 | 184 | 85 | 6 | 81 | 261 | 88 | 246 | 1.47e-18 | 83.6 |
| MS.gene98957.t1 | AT1G48500 | 37.705 | 183 | 88 | 5 | 81 | 261 | 118 | 276 | 3.03e-18 | 83.2 |
Find 74 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTAGCAGTGATGAGTTTA+TGG | 0.220743 | 1.4:-16735144 | MS.gene98957:CDS |
| GATTTCTTGTTGAGGTTATA+TGG | 0.291399 | 1.4:+16734068 | None:intergenic |
| ATGTCTACAGGTGGACTTAT+AGG | 0.310065 | 1.4:+16735239 | None:intergenic |
| GAGCTAGATGCCTGAACTTC+AGG | 0.316257 | 1.4:+16735290 | None:intergenic |
| ATTAAGTGAATTTGCTTGAT+TGG | 0.319621 | 1.4:+16736066 | None:intergenic |
| CCGATCGTTGGTACTGTTGC+TGG | 0.321376 | 1.4:-16735926 | MS.gene98957:CDS |
| CGTTGGTACTGTTGCTGGTT+TGG | 0.366943 | 1.4:-16735921 | MS.gene98957:CDS |
| TTATCTGTTTCTTCACATAC+TGG | 0.372825 | 1.4:-16735188 | MS.gene98957:CDS |
| TCGAGCCAATGATGCTTTGC+GGG | 0.375285 | 1.4:+16734862 | None:intergenic |
| GCTTATCTGCAGCTTCAAAC+AGG | 0.376253 | 1.4:-16735319 | MS.gene98957:CDS |
| GAATTTGCTTGATTGGAAAC+TGG | 0.385359 | 1.4:+16736073 | None:intergenic |
| AAGGCTAAAATGATATCTTC+TGG | 0.412380 | 1.4:-16736589 | None:intergenic |
| CAGGGCTCAACCTGAAGTTC+AGG | 0.416821 | 1.4:-16735300 | MS.gene98957:CDS |
| ATGTTAGCACCTATTGAATT+CGG | 0.423665 | 1.4:+16734029 | None:intergenic |
| GTGGTTGCATTGACTACTTT+GGG | 0.425771 | 1.4:+16735065 | None:intergenic |
| GATATCTTCTGGTTTCATAC+AGG | 0.429332 | 1.4:-16736578 | MS.gene98957:intron |
| GCAGGCCCGCAAAGCATCAT+TGG | 0.432249 | 1.4:-16734867 | MS.gene98957:CDS |
| GCACAAATGCCGAATTCAAT+AGG | 0.448545 | 1.4:-16734038 | MS.gene98957:CDS |
| GGTGGTTGCATTGACTACTT+TGG | 0.451731 | 1.4:+16735064 | None:intergenic |
| AAATTCACATTGTGTTGTAC+AGG | 0.451805 | 1.4:+16736127 | None:intergenic |
| CAAGCAGATGTTGTAGGAGT+AGG | 0.457532 | 1.4:+16735101 | None:intergenic |
| GGCACAAGCCATCATGTTGT+TGG | 0.459085 | 1.4:-16735351 | MS.gene98957:CDS |
| AGGACTTGAAATACCAGAGC+AGG | 0.472355 | 1.4:+16735211 | None:intergenic |
| CTGCTACTTGAGCCACTCCC+TGG | 0.474711 | 1.4:+16735158 | None:intergenic |
| TGTTATCCTTGGTTTGCTAC+CGG | 0.482361 | 1.4:+16733978 | None:intergenic |
| ACTTTGCAAGCAGATGTTGT+AGG | 0.484196 | 1.4:+16735095 | None:intergenic |
| TCACATACTGGTCCACAGCC+AGG | 0.488582 | 1.4:-16735176 | MS.gene98957:CDS |
| CTTGAGCCACTCCCTGGCTG+TGG | 0.494035 | 1.4:+16735164 | None:intergenic |
| GTATGTGAAGAAACAGATAA+AGG | 0.494684 | 1.4:+16735191 | None:intergenic |
| ATCATGTTGTTGGCTGGAAG+TGG | 0.494803 | 1.4:-16735341 | MS.gene98957:CDS |
| ATCGAGCCAATGATGCTTTG+CGG | 0.499003 | 1.4:+16734861 | None:intergenic |
| CAAGCCATCATGTTGTTGGC+TGG | 0.503763 | 1.4:-16735347 | MS.gene98957:CDS |
| AATGCGAAGCAATCACTACT+TGG | 0.504587 | 1.4:-16735983 | MS.gene98957:CDS |
| GAGTTACTCACTGTTATCCT+TGG | 0.504866 | 1.4:+16733967 | None:intergenic |
| GCAACCACCATGGTTCCATC+AGG | 0.516533 | 1.4:-16735050 | MS.gene98957:intron |
| CATCCTCAGATTTCTTGTTG+AGG | 0.517588 | 1.4:+16734060 | None:intergenic |
| ACTGAATGAGGTGCTGTAAC+CGG | 0.521363 | 1.4:+16735953 | None:intergenic |
| AACATGGTAAGTTGAGGAGC+AGG | 0.523147 | 1.4:+16735781 | None:intergenic |
| AAATTCGCATCAGGTGATGA+TGG | 0.528192 | 1.4:-16735266 | MS.gene98957:CDS |
| GAGCAGGGTGGTATGTCTAC+AGG | 0.528533 | 1.4:+16735227 | None:intergenic |
| CATTCAGTTCTTCCGATCGT+TGG | 0.534965 | 1.4:-16735938 | MS.gene98957:CDS |
| TCTAGCTCGAAATTCGCATC+AGG | 0.536374 | 1.4:-16735275 | MS.gene98957:CDS |
| ATCACTACTTGGTGGATCAC+CGG | 0.541418 | 1.4:-16735972 | MS.gene98957:CDS |
| CACTAGTACTGCTAATATGC+CGG | 0.542872 | 1.4:-16733997 | MS.gene98957:CDS |
| AGTTGAGGAGCAGGTGCAGA+TGG | 0.548573 | 1.4:+16735790 | None:intergenic |
| GTAGACATACCACCCTGCTC+TGG | 0.550254 | 1.4:-16735224 | MS.gene98957:CDS |
| AAGCAGATGTTGTAGGAGTA+GGG | 0.553445 | 1.4:+16735102 | None:intergenic |
| CACAGTACCGCCATAAAACA+TGG | 0.558159 | 1.4:+16735765 | None:intergenic |
| GCGAAGCAATCACTACTTGG+TGG | 0.562781 | 1.4:-16735980 | MS.gene98957:CDS |
| AATGATGCTTTGCGGGCCTG+CGG | 0.566874 | 1.4:+16734869 | None:intergenic |
| CAATGATATCACTCCTGAGA+AGG | 0.574823 | 1.4:-16735734 | MS.gene98957:intron |
| ACTGGTCCACAGCCAGGGAG+TGG | 0.579269 | 1.4:-16735170 | MS.gene98957:CDS |
| ATTAGCAGTACTAGTGGTCG+CGG | 0.581937 | 1.4:+16734004 | None:intergenic |
| CACATACTGGTCCACAGCCA+GGG | 0.588678 | 1.4:-16735175 | MS.gene98957:CDS |
| CTTATCTGCAGCTTCAAACA+GGG | 0.597255 | 1.4:-16735318 | MS.gene98957:CDS |
| ACTTCCAGCCAACAACATGA+TGG | 0.615633 | 1.4:+16735343 | None:intergenic |
| CGGCATATTAGCAGTACTAG+TGG | 0.617445 | 1.4:+16733998 | None:intergenic |
| TCAAGCAAATTCACTTAATG+CGG | 0.617831 | 1.4:-16736062 | MS.gene98957:CDS |
| TAGAACTCTTTCAAACACGA+TGG | 0.630111 | 1.4:-16736184 | MS.gene98957:CDS |
| TCTTTCAAACACGATGGACA+AGG | 0.634289 | 1.4:-16736178 | MS.gene98957:CDS |
| GGACTTGAAATACCAGAGCA+GGG | 0.635730 | 1.4:+16735212 | None:intergenic |
| CCAGCAACAGTACCAACGAT+CGG | 0.636094 | 1.4:+16735926 | None:intergenic |
| CCATAAAACATGGTAAGTTG+AGG | 0.638856 | 1.4:+16735775 | None:intergenic |
| ATGGCTGCTAAAACATCTAG+AGG | 0.639805 | 1.4:-16735125 | MS.gene98957:CDS |
| ACGATCGGAAGAACTGAATG+AGG | 0.643920 | 1.4:+16735941 | None:intergenic |
| CAGGGTGGTATGTCTACAGG+TGG | 0.644694 | 1.4:+16735230 | None:intergenic |
| TTGCTGGTTTGGTTGAACCA+TGG | 0.654058 | 1.4:-16735910 | MS.gene98957:intron |
| TAACCTCAACAAGAAATCTG+AGG | 0.657118 | 1.4:-16734063 | MS.gene98957:CDS |
| TTACATACCTGATGGAACCA+TGG | 0.681302 | 1.4:+16735043 | None:intergenic |
| AATATGCCGGTAGCAAACCA+AGG | 0.684244 | 1.4:-16733984 | MS.gene98957:CDS |
| AGTAGTCAATGCAACCACCA+TGG | 0.687562 | 1.4:-16735060 | MS.gene98957:CDS |
| TTCAAACACGATGGACAAGG+TGG | 0.707235 | 1.4:-16736175 | MS.gene98957:CDS |
| CTTGAAATACCAGAGCAGGG+TGG | 0.775660 | 1.4:+16735215 | None:intergenic |
| CATACCTGATGGAACCATGG+TGG | 0.816498 | 1.4:+16735046 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATAAGATGTATATTCA+TGG | - | chr1.4:16736282-16736301 | MS.gene98957:intron | 15.0% |
| !! | CCAAAAGTTATAATAAATAT+AGG | - | chr1.4:16735592-16735611 | MS.gene98957:intron | 15.0% |
| !!! | ATGTATAAAATTATTTTGGA+AGG | + | chr1.4:16736395-16736414 | None:intergenic | 15.0% |
| !!! | ATTCATATGAAATTGATTTT+CGG | - | chr1.4:16734226-16734245 | MS.gene98957:intron | 15.0% |
| !!! | CCTATATTTATTATAACTTT+TGG | + | chr1.4:16735595-16735614 | None:intergenic | 15.0% |
| !!! | CTAGATGTATAAAATTATTT+TGG | + | chr1.4:16736399-16736418 | None:intergenic | 15.0% |
| !!! | TGTATAAAATTATTTTGGAA+GGG | + | chr1.4:16736394-16736413 | None:intergenic | 15.0% |
| !!! | TTAATTATACAAGTCTTTTT+AGG | - | chr1.4:16734198-16734217 | MS.gene98957:intron | 15.0% |
| !! | AAAACAAATTCACATTTAGA+GGG | - | chr1.4:16734110-16734129 | MS.gene98957:intron | 20.0% |
| !! | AAACATCCTAAAATTATGTT+CGG | + | chr1.4:16734254-16734273 | None:intergenic | 20.0% |
| !! | CCTAAAAAATCTTTATAAGT+GGG | - | chr1.4:16735900-16735919 | MS.gene98957:intron | 20.0% |
| !! | TAAAACAAATTCACATTTAG+AGG | - | chr1.4:16734109-16734128 | MS.gene98957:intron | 20.0% |
| !! | TGTTAAAAAATTGTGAAGTT+AGG | - | chr1.4:16734039-16734058 | MS.gene98957:CDS | 20.0% |
| !!! | AAAAATCATCTTGTAACTTT+TGG | - | chr1.4:16734535-16734554 | MS.gene98957:intron | 20.0% |
| !!! | AAGTTACAAGATGATTTTTT+AGG | + | chr1.4:16734534-16734553 | None:intergenic | 20.0% |
| !!! | ATACATCTTATAATTTGTGT+TGG | + | chr1.4:16736277-16736296 | None:intergenic | 20.0% |
| !!! | GTATAAAATTATTTTGGAAG+GGG | + | chr1.4:16736393-16736412 | None:intergenic | 20.0% |
| ! | AAAAACAGAAATTGAGAGAA+AGG | + | chr1.4:16734019-16734038 | None:intergenic | 25.0% |
| ! | AAATAATTGGTATGATGTGT+TGG | - | chr1.4:16736346-16736365 | MS.gene98957:intron | 25.0% |
| ! | AAATCAATCCAAGTAGAATA+GGG | + | chr1.4:16734874-16734893 | None:intergenic | 25.0% |
| ! | GCCTAAAAAATCTTTATAAG+TGG | - | chr1.4:16735899-16735918 | MS.gene98957:intron | 25.0% |
| ! | GTATGATTTCCTTTATACTT+GGG | + | chr1.4:16735119-16735138 | None:intergenic | 25.0% |
| ! | TAAATCAATCCAAGTAGAAT+AGG | + | chr1.4:16734875-16734894 | None:intergenic | 25.0% |
| ! | TAAATGGTAAGAACAAACAA+TGG | + | chr1.4:16734358-16734377 | None:intergenic | 25.0% |
| ! | TGAAAAGGTCTTTATAAAGT+GGG | - | chr1.4:16736208-16736227 | MS.gene98957:intron | 25.0% |
| ! | TGTATGATTTCCTTTATACT+TGG | + | chr1.4:16735120-16735139 | None:intergenic | 25.0% |
| ! | TTGTCATAAACTAACTCATT+AGG | - | chr1.4:16734996-16735015 | MS.gene98957:intron | 25.0% |
| !! | ATTAAGTGAATTTGCTTGAT+TGG | + | chr1.4:16734497-16734516 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+AGG | - | chr1.4:16735093-16735112 | MS.gene98957:CDS | 25.0% |
| !!! | AAAGATGATAACTTGTTGTA+TGG | + | chr1.4:16735790-16735809 | None:intergenic | 25.0% |
| !!! | CATCATACCAATTATTTTAG+AGG | + | chr1.4:16736343-16736362 | None:intergenic | 25.0% |
| !!! | CCCACTTATAAAGATTTTTT+AGG | + | chr1.4:16735903-16735922 | None:intergenic | 25.0% |
| AAAGGTTAGATCTAATACAC+GGG | - | chr1.4:16735740-16735759 | MS.gene98957:CDS | 30.0% | |
| AAATTCACATTGTGTTGTAC+AGG | + | chr1.4:16734436-16734455 | None:intergenic | 30.0% | |
| AATAACCTGAAAACAGCTTA+TGG | + | chr1.4:16734978-16734997 | None:intergenic | 30.0% | |
| AATCAATCCAAGTAGAATAG+GGG | + | chr1.4:16734873-16734892 | None:intergenic | 30.0% | |
| AGATGTCATATAGACTGAAA+AGG | - | chr1.4:16736193-16736212 | MS.gene98957:intron | 30.0% | |
| AGGTTTGATCAATTGTATTC+AGG | - | chr1.4:16735188-16735207 | MS.gene98957:CDS | 30.0% | |
| AGTCTATATGACATCTGATT+TGG | + | chr1.4:16736189-16736208 | None:intergenic | 30.0% | |
| ATATATTCCCCTATTCTACT+TGG | - | chr1.4:16734863-16734882 | MS.gene98957:CDS | 30.0% | |
| ATGTTAGCACCTATTGAATT+CGG | + | chr1.4:16736534-16736553 | None:intergenic | 30.0% | |
| ATTCAAAAGTCTCTATAGGT+GGG | - | chr1.4:16736000-16736019 | MS.gene98957:CDS | 30.0% | |
| CTGAAAAGGTCTTTATAAAG+TGG | - | chr1.4:16736207-16736226 | MS.gene98957:intron | 30.0% | |
| GAAAGGTTAGATCTAATACA+CGG | - | chr1.4:16735739-16735758 | MS.gene98957:CDS | 30.0% | |
| GACCATCTTATAATTTGAAG+TGG | + | chr1.4:16735971-16735990 | None:intergenic | 30.0% | |
| GATTTCTTGTTGAGGTTATA+TGG | + | chr1.4:16736495-16736514 | None:intergenic | 30.0% | |
| GCATTGAACTAAAATTACCA+TGG | + | chr1.4:16734670-16734689 | None:intergenic | 30.0% | |
| GGTCAACACAAATTATAAGA+TGG | - | chr1.4:16736066-16736085 | MS.gene98957:CDS | 30.0% | |
| GTATGTGAAGAAACAGATAA+AGG | + | chr1.4:16735372-16735391 | None:intergenic | 30.0% | |
| GTCTATATGACATCTGATTT+GGG | + | chr1.4:16736188-16736207 | None:intergenic | 30.0% | |
| TCAAGCAAATTCACTTAATG+CGG | - | chr1.4:16734498-16734517 | MS.gene98957:intron | 30.0% | |
| TTATACTGTTACATACCTGA+TGG | + | chr1.4:16735528-16735547 | None:intergenic | 30.0% | |
| ! | ACCTATAGAGACTTTTGAAT+GGG | + | chr1.4:16736000-16736019 | None:intergenic | 30.0% |
| ! | ACTTTTGGTCAGAATATGAA+CGG | - | chr1.4:16734550-16734569 | MS.gene98957:intron | 30.0% |
| ! | TATGTGTTTCTGTCAATACA+GGG | - | chr1.4:16736455-16736474 | MS.gene98957:intron | 30.0% |
| ! | TTATCTGTTTCTTCACATAC+TGG | - | chr1.4:16735372-16735391 | MS.gene98957:intron | 30.0% |
| ! | TTATGTGTTTCTGTCAATAC+AGG | - | chr1.4:16736454-16736473 | MS.gene98957:intron | 30.0% |
| !! | GATAACTTGTTGTATGGAAA+AGG | + | chr1.4:16735784-16735803 | None:intergenic | 30.0% |
| !! | GTGTTTGAAAGAGTTCTAAA+TGG | + | chr1.4:16734374-16734393 | None:intergenic | 30.0% |
| !! | TCGTTTGCCTCTAAAATAAT+TGG | - | chr1.4:16736333-16736352 | MS.gene98957:intron | 30.0% |
| !! | TTTTGACTGAAGTTAAGCAT+AGG | - | chr1.4:16735168-16735187 | MS.gene98957:CDS | 30.0% |
| !!! | ACAAGATGATTTTTTAGGAG+CGG | + | chr1.4:16734529-16734548 | None:intergenic | 30.0% |
| AACAAACAATGGAAGGAAGT+GGG | + | chr1.4:16734347-16734366 | None:intergenic | 35.0% | |
| AAGTAGCAGTGATGAGTTTA+TGG | - | chr1.4:16735416-16735435 | MS.gene98957:intron | 35.0% | |
| AATTGGTATGATGTGTTGGA+AGG | - | chr1.4:16736350-16736369 | MS.gene98957:intron | 35.0% | |
| AGGACAACATTCAGTTAATC+AGG | - | chr1.4:16734059-16734078 | MS.gene98957:CDS | 35.0% | |
| AGTGCCTATCCAAAATTTGT+TGG | - | chr1.4:16736097-16736116 | MS.gene98957:CDS | 35.0% | |
| AGTGCTTATGATAGTAGACA+AGG | + | chr1.4:16734903-16734922 | None:intergenic | 35.0% | |
| CAATGCTTGAGATGTTTCTT+AGG | - | chr1.4:16734684-16734703 | MS.gene98957:intron | 35.0% | |
| CATTCAAAAGTCTCTATAGG+TGG | - | chr1.4:16735999-16736018 | MS.gene98957:CDS | 35.0% | |
| CCATAAAACATGGTAAGTTG+AGG | + | chr1.4:16734788-16734807 | None:intergenic | 35.0% | |
| CTAGAGTGTGATCCAATAAA+GGG | + | chr1.4:16736127-16736146 | None:intergenic | 35.0% | |
| CTAGTTCAACCTTACAAAAC+CGG | + | chr1.4:16735947-16735966 | None:intergenic | 35.0% | |
| GAACAACTCCATACTACAAA+AGG | + | chr1.4:16735624-16735643 | None:intergenic | 35.0% | |
| GGCCACTTCAAATTATAAGA+TGG | - | chr1.4:16735966-16735985 | MS.gene98957:CDS | 35.0% | |
| TAACCTCAACAAGAAATCTG+AGG | - | chr1.4:16736497-16736516 | MS.gene98957:intron | 35.0% | |
| TAGAACTCTTTCAAACACGA+TGG | - | chr1.4:16734376-16734395 | MS.gene98957:intron | 35.0% | |
| TGAGAGAAAAATACCTTCTC+AGG | + | chr1.4:16734842-16734861 | None:intergenic | 35.0% | |
| TGGTAAGAACAAACAATGGA+AGG | + | chr1.4:16734354-16734373 | None:intergenic | 35.0% | |
| ! | AATGAGAGTATGAGACTGTT+TGG | - | chr1.4:16734923-16734942 | MS.gene98957:intron | 35.0% |
| ! | CAACTTACCATGTTTTATGG+CGG | - | chr1.4:16734788-16734807 | MS.gene98957:intron | 35.0% |
| ! | CACCTATAGAGACTTTTGAA+TGG | + | chr1.4:16736001-16736020 | None:intergenic | 35.0% |
| ! | CCTCAACTTACCATGTTTTA+TGG | - | chr1.4:16734785-16734804 | MS.gene98957:intron | 35.0% |
| ! | GAATTTGCTTGATTGGAAAC+TGG | + | chr1.4:16734490-16734509 | None:intergenic | 35.0% |
| ! | GAGATGTTTCTTAGGAGTTT+TGG | - | chr1.4:16734692-16734711 | MS.gene98957:intron | 35.0% |
| ! | GTGCCTATCCAAAATTTGTT+GGG | - | chr1.4:16736098-16736117 | MS.gene98957:CDS | 35.0% |
| ! | TCGGATCCGAACATAATTTT+AGG | - | chr1.4:16734245-16734264 | MS.gene98957:intron | 35.0% |
| ! | TCTAGAGTGTGATCCAATAA+AGG | + | chr1.4:16736128-16736147 | None:intergenic | 35.0% |
| ! | TTTTCAGTGCAATCTGCTTA+CGG | - | chr1.4:16734169-16734188 | MS.gene98957:intron | 35.0% |
| !! | ACCTAACAAGTCAGTTTTGT+GGG | - | chr1.4:16736239-16736258 | MS.gene98957:intron | 35.0% |
| !! | GATATCTTCTGGTTTCATAC+AGG | - | chr1.4:16733982-16734001 | MS.gene98957:CDS | 35.0% |
| AAATTCGCATCAGGTGATGA+TGG | - | chr1.4:16735294-16735313 | MS.gene98957:CDS | 40.0% | |
| AAGCAGATGTTGTAGGAGTA+GGG | + | chr1.4:16735461-16735480 | None:intergenic | 40.0% | |
| AATGCGAAGCAATCACTACT+TGG | - | chr1.4:16734577-16734596 | MS.gene98957:intron | 40.0% | |
| ACTTTGCAAGCAGATGTTGT+AGG | + | chr1.4:16735468-16735487 | None:intergenic | 40.0% | |
| ATATCACTCACCTTACAAGC+CGG | - | chr1.4:16735925-16735944 | MS.gene98957:CDS | 40.0% | |
| ATGGCTGCTAAAACATCTAG+AGG | - | chr1.4:16735435-16735454 | MS.gene98957:intron | 40.0% | |
| ATTCACATTTAGAGGGTCGT+TGG | - | chr1.4:16734117-16734136 | MS.gene98957:intron | 40.0% | |
| CAAACAAGGCCCAAGTATAA+AGG | - | chr1.4:16735107-16735126 | MS.gene98957:CDS | 40.0% | |
| CAATGATATCACTCCTGAGA+AGG | - | chr1.4:16734826-16734845 | MS.gene98957:intron | 40.0% | |
| CACTAGTACTGCTAATATGC+CGG | - | chr1.4:16736563-16736582 | MS.gene98957:intron | 40.0% | |
| CACTCTAGATGTCAAGTTCA+TGG | - | chr1.4:16736139-16736158 | MS.gene98957:CDS | 40.0% | |
| CATCCTCAGATTTCTTGTTG+AGG | + | chr1.4:16736503-16736522 | None:intergenic | 40.0% | |
| CTTATCTGCAGCTTCAAACA+GGG | - | chr1.4:16735242-16735261 | MS.gene98957:CDS | 40.0% | |
| GAACAAACAATGGAAGGAAG+TGG | + | chr1.4:16734348-16734367 | None:intergenic | 40.0% | |
| GCACAAATGCCGAATTCAAT+AGG | - | chr1.4:16736522-16736541 | MS.gene98957:intron | 40.0% | |
| GCATACATCACCTTACAAGT+CGG | - | chr1.4:16736025-16736044 | MS.gene98957:CDS | 40.0% | |
| GCCCATTCAAAAGTCTCTAT+AGG | - | chr1.4:16735996-16736015 | MS.gene98957:CDS | 40.0% | |
| TATGATGTGTTGGAAGGAAG+AGG | - | chr1.4:16736356-16736375 | MS.gene98957:intron | 40.0% | |
| TCTTTCAAACACGATGGACA+AGG | - | chr1.4:16734382-16734401 | MS.gene98957:intron | 40.0% | |
| TTACATACCTGATGGAACCA+TGG | + | chr1.4:16735520-16735539 | None:intergenic | 40.0% | |
| TTTGGAGAGCTTATCGAATC+AGG | - | chr1.4:16734941-16734960 | MS.gene98957:intron | 40.0% | |
| ! | ATGTCTACAGGTGGACTTAT+AGG | + | chr1.4:16735324-16735343 | None:intergenic | 40.0% |
| ! | ATTTTATGCAGCTATACCGC+AGG | - | chr1.4:16735675-16735694 | MS.gene98957:intron | 40.0% |
| ! | CACCTAACAAGTCAGTTTTG+TGG | - | chr1.4:16736238-16736257 | MS.gene98957:intron | 40.0% |
| ! | GGATGCATCCTTTTGTAGTA+TGG | - | chr1.4:16735613-16735632 | MS.gene98957:intron | 40.0% |
| ! | TCGCCCAACAAATTTTGGAT+AGG | + | chr1.4:16736104-16736123 | None:intergenic | 40.0% |
| !! | AGTTTTGTGGGGTTGAGTTT+GGG | - | chr1.4:16736251-16736270 | MS.gene98957:intron | 40.0% |
| !! | CATGTCCATAAGCTGTTTTC+AGG | - | chr1.4:16734970-16734989 | MS.gene98957:intron | 40.0% |
| !! | CCTAACAAGTCAGTTTTGTG+GGG | - | chr1.4:16736240-16736259 | MS.gene98957:intron | 40.0% |
| !! | CGGTTTTGTAAGGTTGAACT+AGG | - | chr1.4:16735945-16735964 | MS.gene98957:CDS | 40.0% |
| !! | CTTTATACTTGGGCCTTGTT+TGG | + | chr1.4:16735109-16735128 | None:intergenic | 40.0% |
| !! | GTGGTTGCATTGACTACTTT+GGG | + | chr1.4:16735498-16735517 | None:intergenic | 40.0% |
| !!! | AGCATCATTGGCTCGATTTT+TGG | - | chr1.4:16735705-16735724 | MS.gene98957:intron | 40.0% |
| AATATGCCGGTAGCAAACCA+AGG | - | chr1.4:16736576-16736595 | MS.gene98957:intron | 45.0% | |
| ACGATCGGAAGAACTGAATG+AGG | + | chr1.4:16734622-16734641 | None:intergenic | 45.0% | |
| ACTTCCAGCCAACAACATGA+TGG | + | chr1.4:16735220-16735239 | None:intergenic | 45.0% | |
| AGGACTTGAAATACCAGAGC+AGG | + | chr1.4:16735352-16735371 | None:intergenic | 45.0% | |
| AGTAGTCAATGCAACCACCA+TGG | - | chr1.4:16735500-16735519 | MS.gene98957:intron | 45.0% | |
| ATCGAGCCAATGATGCTTTG+CGG | + | chr1.4:16735702-16735721 | None:intergenic | 45.0% | |
| ATTAGCAGTACTAGTGGTCG+CGG | + | chr1.4:16736559-16736578 | None:intergenic | 45.0% | |
| CAAAAGTCTCTATAGGTGGG+AGG | - | chr1.4:16736003-16736022 | MS.gene98957:CDS | 45.0% | |
| CAAGCAGATGTTGTAGGAGT+AGG | + | chr1.4:16735462-16735481 | None:intergenic | 45.0% | |
| CACAGTACCGCCATAAAACA+TGG | + | chr1.4:16734798-16734817 | None:intergenic | 45.0% | |
| CATTCAGTTCTTCCGATCGT+TGG | - | chr1.4:16734622-16734641 | MS.gene98957:intron | 45.0% | |
| CGGCATATTAGCAGTACTAG+TGG | + | chr1.4:16736565-16736584 | None:intergenic | 45.0% | |
| GCTTATCTGCAGCTTCAAAC+AGG | - | chr1.4:16735241-16735260 | MS.gene98957:CDS | 45.0% | |
| GGACTTGAAATACCAGAGCA+GGG | + | chr1.4:16735351-16735370 | None:intergenic | 45.0% | |
| TCAAGTTCATGGTGTGACGA+GGG | - | chr1.4:16736150-16736169 | MS.gene98957:CDS | 45.0% | |
| TTCAAACACGATGGACAAGG+TGG | - | chr1.4:16734385-16734404 | MS.gene98957:intron | 45.0% | |
| TTTGTTGGGCGACCCTTTAT+TGG | - | chr1.4:16736112-16736131 | MS.gene98957:CDS | 45.0% | |
| ! | AACATGGTAAGTTGAGGAGC+AGG | + | chr1.4:16734782-16734801 | None:intergenic | 45.0% |
| ! | AAGGGTCGCCCAACAAATTT+TGG | + | chr1.4:16736109-16736128 | None:intergenic | 45.0% |
| ! | ACCTTACAAGTCGGCTTTGT+AGG | - | chr1.4:16736034-16736053 | MS.gene98957:CDS | 45.0% |
| ! | ATCACTACTTGGTGGATCAC+CGG | - | chr1.4:16734588-16734607 | MS.gene98957:intron | 45.0% |
| ! | ATCATGTTGTTGGCTGGAAG+TGG | - | chr1.4:16735219-16735238 | MS.gene98957:CDS | 45.0% |
| ! | CCTTACAAGTCGGCTTTGTA+GGG | - | chr1.4:16736035-16736054 | MS.gene98957:CDS | 45.0% |
| ! | TCTAGCTCGAAATTCGCATC+AGG | - | chr1.4:16735285-16735304 | MS.gene98957:CDS | 45.0% |
| !! | ACTGAATGAGGTGCTGTAAC+CGG | + | chr1.4:16734610-16734629 | None:intergenic | 45.0% |
| !! | CAGTTTTGTGGGGTTGAGTT+TGG | - | chr1.4:16736250-16736269 | MS.gene98957:intron | 45.0% |
| !! | CCCCACAAAACTGACTTGTT+AGG | + | chr1.4:16736243-16736262 | None:intergenic | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | + | chr1.4:16735938-16735957 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | - | chr1.4:16735935-16735954 | MS.gene98957:CDS | 45.0% |
| !! | GGTGGTTGCATTGACTACTT+TGG | + | chr1.4:16735499-16735518 | None:intergenic | 45.0% |
| !! | TCGATTTTTGGAGAAGCGCA+AGG | - | chr1.4:16735717-16735736 | MS.gene98957:intron | 45.0% |
| !! | TTGCTGGTTTGGTTGAACCA+TGG | - | chr1.4:16734650-16734669 | MS.gene98957:intron | 45.0% |
| !! | TTTTGGAGAAGCGCAAGGAA+AGG | - | chr1.4:16735722-16735741 | MS.gene98957:intron | 45.0% |
| CAAGCCATCATGTTGTTGGC+TGG | - | chr1.4:16735213-16735232 | MS.gene98957:CDS | 50.0% | |
| CATACCTGATGGAACCATGG+TGG | + | chr1.4:16735517-16735536 | None:intergenic | 50.0% | |
| CCAGCAACAGTACCAACGAT+CGG | + | chr1.4:16734637-16734656 | None:intergenic | 50.0% | |
| CTTGAAATACCAGAGCAGGG+TGG | + | chr1.4:16735348-16735367 | None:intergenic | 50.0% | |
| GAGCTAGATGCCTGAACTTC+AGG | + | chr1.4:16735273-16735292 | None:intergenic | 50.0% | |
| GCGAAGCAATCACTACTTGG+TGG | - | chr1.4:16734580-16734599 | MS.gene98957:intron | 50.0% | |
| GGCACAAGCCATCATGTTGT+TGG | - | chr1.4:16735209-16735228 | MS.gene98957:CDS | 50.0% | |
| GTCAAGTTCATGGTGTGACG+AGG | - | chr1.4:16736149-16736168 | MS.gene98957:CDS | 50.0% | |
| TCGAGCCAATGATGCTTTGC+GGG | + | chr1.4:16735701-16735720 | None:intergenic | 50.0% | |
| ! | CGGCTTTGTAGGGTTGAGTT+AGG | - | chr1.4:16736045-16736064 | MS.gene98957:CDS | 50.0% |
| ! | CGTTGGTACTGTTGCTGGTT+TGG | - | chr1.4:16734639-16734658 | MS.gene98957:intron | 50.0% |
| !! | CCCTACAAAGCCGACTTGTA+AGG | + | chr1.4:16736038-16736057 | None:intergenic | 50.0% |
| AATGATGCTTTGCGGGCCTG+CGG | + | chr1.4:16735694-16735713 | None:intergenic | 55.0% | |
| AGTTGAGGAGCAGGTGCAGA+TGG | + | chr1.4:16734773-16734792 | None:intergenic | 55.0% | |
| CACATACTGGTCCACAGCCA+GGG | - | chr1.4:16735385-16735404 | MS.gene98957:intron | 55.0% | |
| CAGGGCTCAACCTGAAGTTC+AGG | - | chr1.4:16735260-16735279 | MS.gene98957:CDS | 55.0% | |
| CAGGGTGGTATGTCTACAGG+TGG | + | chr1.4:16735333-16735352 | None:intergenic | 55.0% | |
| CCGATCGTTGGTACTGTTGC+TGG | - | chr1.4:16734634-16734653 | MS.gene98957:intron | 55.0% | |
| GAGCAGGGTGGTATGTCTAC+AGG | + | chr1.4:16735336-16735355 | None:intergenic | 55.0% | |
| GCAACCACCATGGTTCCATC+AGG | - | chr1.4:16735510-16735529 | MS.gene98957:intron | 55.0% | |
| GGACTCGAACGTGAGCAGAT+AGG | - | chr1.4:16734138-16734157 | MS.gene98957:intron | 55.0% | |
| GTAGACATACCACCCTGCTC+TGG | - | chr1.4:16735336-16735355 | MS.gene98957:CDS | 55.0% | |
| TCACATACTGGTCCACAGCC+AGG | - | chr1.4:16735384-16735403 | MS.gene98957:intron | 55.0% | |
| ! | CTGCTACTTGAGCCACTCCC+TGG | + | chr1.4:16735405-16735424 | None:intergenic | 60.0% |
| ! | GCAGGCCCGCAAAGCATCAT+TGG | - | chr1.4:16735693-16735712 | MS.gene98957:intron | 60.0% |
| ACTGGTCCACAGCCAGGGAG+TGG | - | chr1.4:16735390-16735409 | MS.gene98957:intron | 65.0% | |
| CTTGAGCCACTCCCTGGCTG+TGG | + | chr1.4:16735399-16735418 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 16733980 | 16736602 | 16733980 | ID=MS.gene98957 |
| chr1.4 | mRNA | 16733980 | 16736602 | 16733980 | ID=MS.gene98957.t1;Parent=MS.gene98957 |
| chr1.4 | exon | 16736579 | 16736602 | 16736579 | ID=MS.gene98957.t1.exon1;Parent=MS.gene98957.t1 |
| chr1.4 | CDS | 16736579 | 16736602 | 16736579 | ID=cds.MS.gene98957.t1;Parent=MS.gene98957.t1 |
| chr1.4 | exon | 16735911 | 16736203 | 16735911 | ID=MS.gene98957.t1.exon2;Parent=MS.gene98957.t1 |
| chr1.4 | CDS | 16735911 | 16736203 | 16735911 | ID=cds.MS.gene98957.t1;Parent=MS.gene98957.t1 |
| chr1.4 | exon | 16735735 | 16735819 | 16735735 | ID=MS.gene98957.t1.exon3;Parent=MS.gene98957.t1 |
| chr1.4 | CDS | 16735735 | 16735819 | 16735735 | ID=cds.MS.gene98957.t1;Parent=MS.gene98957.t1 |
| chr1.4 | exon | 16735051 | 16735372 | 16735051 | ID=MS.gene98957.t1.exon4;Parent=MS.gene98957.t1 |
| chr1.4 | CDS | 16735051 | 16735372 | 16735051 | ID=cds.MS.gene98957.t1;Parent=MS.gene98957.t1 |
| chr1.4 | exon | 16734839 | 16734896 | 16734839 | ID=MS.gene98957.t1.exon5;Parent=MS.gene98957.t1 |
| chr1.4 | CDS | 16734839 | 16734896 | 16734839 | ID=cds.MS.gene98957.t1;Parent=MS.gene98957.t1 |
| chr1.4 | exon | 16733980 | 16734106 | 16733980 | ID=MS.gene98957.t1.exon6;Parent=MS.gene98957.t1 |
| chr1.4 | CDS | 16733980 | 16734106 | 16733980 | ID=cds.MS.gene98957.t1;Parent=MS.gene98957.t1 |
| Gene Sequence |
| Protein sequence |
