Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99263.t1 | XP_003614112.1 | 100 | 170 | 0 | 0 | 1 | 170 | 1 | 170 | 4.20E-88 | 334 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99263.t1 | Q5R723 | 44.7 | 159 | 73 | 5 | 9 | 167 | 5 | 148 | 1.5e-25 | 117.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99263.t1 | B7FJM0 | 100.0 | 170 | 0 | 0 | 1 | 170 | 1 | 170 | 3.0e-88 | 334.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054537 | MS.gene99263 | 0.80502 | 1.63E-49 | -1.69E-46 |
| MS.gene054657 | MS.gene99263 | 0.802088 | 6.62E-49 | -1.69E-46 |
| MS.gene057079 | MS.gene99263 | 0.816284 | 5.99E-52 | -1.69E-46 |
| MS.gene05795 | MS.gene99263 | 0.815629 | 8.38E-52 | -1.69E-46 |
| MS.gene060918 | MS.gene99263 | 0.804406 | 2.19E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99263.t1 | MTR_5g044970 | 100.000 | 170 | 0 | 0 | 1 | 170 | 1 | 170 | 1.96e-124 | 347 |
| MS.gene99263.t1 | MTR_3g080130 | 45.238 | 84 | 45 | 1 | 10 | 93 | 36 | 118 | 7.71e-16 | 70.5 |
| MS.gene99263.t1 | MTR_7g013740 | 42.667 | 75 | 43 | 0 | 12 | 86 | 42 | 116 | 9.52e-16 | 70.5 |
| MS.gene99263.t1 | MTR_7g013730 | 44.000 | 75 | 42 | 0 | 12 | 86 | 42 | 116 | 3.46e-15 | 71.2 |
| MS.gene99263.t1 | MTR_4g109540 | 36.905 | 84 | 53 | 0 | 3 | 86 | 35 | 118 | 5.97e-14 | 67.8 |
| MS.gene99263.t1 | MTR_3g084040 | 34.884 | 86 | 55 | 1 | 1 | 86 | 27 | 111 | 2.56e-13 | 63.9 |
| MS.gene99263.t1 | MTR_4g109540 | 40.000 | 75 | 45 | 0 | 12 | 86 | 52 | 126 | 3.13e-12 | 63.2 |
| MS.gene99263.t1 | MTR_4g070140 | 42.667 | 75 | 43 | 0 | 12 | 86 | 10 | 84 | 3.46e-12 | 62.0 |
| MS.gene99263.t1 | MTR_1g054675 | 39.785 | 93 | 51 | 1 | 10 | 97 | 43 | 135 | 5.28e-12 | 62.0 |
| MS.gene99263.t1 | MTR_7g105260 | 37.179 | 78 | 49 | 0 | 12 | 89 | 34 | 111 | 2.02e-11 | 58.9 |
| MS.gene99263.t1 | MTR_4g070080 | 41.333 | 75 | 44 | 0 | 12 | 86 | 8 | 82 | 2.30e-11 | 58.5 |
| MS.gene99263.t1 | MTR_3g025880 | 38.667 | 75 | 46 | 0 | 12 | 86 | 46 | 120 | 2.52e-11 | 61.2 |
| MS.gene99263.t1 | MTR_4g070080 | 41.333 | 75 | 44 | 0 | 12 | 86 | 8 | 82 | 4.48e-11 | 58.5 |
| MS.gene99263.t1 | MTR_4g070190 | 40.000 | 75 | 45 | 0 | 12 | 86 | 10 | 84 | 5.07e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99263.t1 | AT1G13690 | 82.822 | 163 | 27 | 1 | 9 | 170 | 12 | 174 | 1.22e-98 | 282 |
| MS.gene99263.t1 | AT5G61030 | 42.500 | 80 | 46 | 0 | 7 | 86 | 37 | 116 | 1.09e-16 | 75.9 |
| MS.gene99263.t1 | AT5G61030 | 42.500 | 80 | 46 | 0 | 7 | 86 | 37 | 116 | 1.09e-16 | 75.9 |
| MS.gene99263.t1 | AT3G08000 | 43.373 | 83 | 46 | 1 | 12 | 94 | 43 | 124 | 1.48e-16 | 72.4 |
| MS.gene99263.t1 | AT4G39260 | 42.529 | 87 | 48 | 1 | 12 | 98 | 8 | 92 | 7.36e-15 | 66.6 |
| MS.gene99263.t1 | AT4G13850 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 1.78e-13 | 64.3 |
| MS.gene99263.t1 | AT4G13850 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 2.09e-13 | 64.3 |
| MS.gene99263.t1 | AT4G39260 | 44.000 | 75 | 42 | 0 | 12 | 86 | 8 | 82 | 2.17e-13 | 63.9 |
| MS.gene99263.t1 | AT4G13850 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 2.51e-13 | 64.3 |
| MS.gene99263.t1 | AT4G13850 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 2.77e-13 | 64.3 |
| MS.gene99263.t1 | AT1G74230 | 38.636 | 88 | 50 | 2 | 2 | 86 | 23 | 109 | 4.87e-13 | 65.9 |
| MS.gene99263.t1 | AT4G39260 | 44.000 | 75 | 42 | 0 | 12 | 86 | 8 | 82 | 5.25e-13 | 63.9 |
| MS.gene99263.t1 | AT3G23830 | 41.333 | 75 | 44 | 0 | 12 | 86 | 37 | 111 | 1.41e-12 | 62.0 |
| MS.gene99263.t1 | AT3G23830 | 41.333 | 75 | 44 | 0 | 12 | 86 | 37 | 111 | 1.41e-12 | 62.0 |
| MS.gene99263.t1 | AT2G21660 | 39.286 | 84 | 51 | 0 | 3 | 86 | 1 | 84 | 3.30e-12 | 61.6 |
| MS.gene99263.t1 | AT5G04280 | 37.209 | 86 | 54 | 0 | 4 | 89 | 1 | 86 | 3.96e-12 | 63.2 |
| MS.gene99263.t1 | AT2G21660 | 39.286 | 84 | 51 | 0 | 3 | 86 | 1 | 84 | 4.46e-12 | 61.6 |
| MS.gene99263.t1 | AT4G13860 | 38.889 | 72 | 44 | 0 | 12 | 83 | 5 | 76 | 1.78e-11 | 57.8 |
| MS.gene99263.t1 | AT1G60650 | 35.714 | 84 | 54 | 0 | 6 | 89 | 8 | 91 | 6.95e-11 | 59.7 |
| MS.gene99263.t1 | AT1G60650 | 35.714 | 84 | 54 | 0 | 6 | 89 | 8 | 91 | 6.95e-11 | 59.7 |
Find 42 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACTTCCTGAAAAGATTA+AGG | 0.200027 | 5.4:+34723364 | MS.gene99263:CDS |
| ACTCAGAAGCATCGTTCTTT+CGG | 0.351389 | 5.4:+34723248 | MS.gene99263:CDS |
| CAGCTTTATTCTCTGCTTCA+AGG | 0.355738 | 5.4:-34725335 | None:intergenic |
| TTTCTCTCCTTCTCGCTCTT+CGG | 0.386519 | 5.4:-34725397 | None:intergenic |
| GAAAGAAGAAATTGAGATCA+AGG | 0.390755 | 5.4:+34725416 | MS.gene99263:CDS |
| TTCCGCTGCCATGGATAATA+TGG | 0.393621 | 5.4:+34723301 | MS.gene99263:CDS |
| TTTGGGCGGATGCGGATACT+TGG | 0.419214 | 5.4:+34725277 | MS.gene99263:CDS |
| GCACTTCCTGAAAAGATTAA+GGG | 0.425176 | 5.4:+34723365 | MS.gene99263:CDS |
| CGTCGGTGGTTTAGCGGAAG+AGG | 0.445488 | 5.4:+34723148 | MS.gene99263:CDS |
| AGAGAATAAAGCTGCTATGC+TGG | 0.469940 | 5.4:+34725344 | MS.gene99263:CDS |
| CACGCGGCGTTCATACCCTT+CGG | 0.482040 | 5.4:+34723188 | MS.gene99263:CDS |
| TCTCTACGTCGGTGGTTTAG+CGG | 0.487229 | 5.4:+34723142 | MS.gene99263:CDS |
| AAGATTAAGGGTGGTGAACA+AGG | 0.491175 | 5.4:+34723377 | MS.gene99263:CDS |
| CACGTCTTTGATGTCTCCGA+AGG | 0.491338 | 5.4:-34723204 | None:intergenic |
| TGAGATCAAGGATGATCCTA+TGG | 0.496265 | 5.4:+34725428 | MS.gene99263:CDS |
| AACGATGCTTCTGAGTTGCT+TGG | 0.499094 | 5.4:-34723241 | None:intergenic |
| AGGGCTGAAGCAGAGGTTGT+TGG | 0.502250 | 5.4:+34725453 | MS.gene99263:CDS |
| ATGGATGGTGCTGAACTCTA+TGG | 0.504782 | 5.4:+34723320 | MS.gene99263:CDS |
| GGAAGATGCTTCCGCTGCCA+TGG | 0.530370 | 5.4:+34723292 | MS.gene99263:CDS |
| TTCTGAGTTGCTTGGTCAAG+CGG | 0.536494 | 5.4:-34723233 | None:intergenic |
| TTAAGGGTGGTGAACAAGGA+TGG | 0.543887 | 5.4:+34723381 | MS.gene99263:CDS |
| CAACAATGGCTATGATGCAA+GGG | 0.557293 | 5.4:+34723105 | None:intergenic |
| TCTGCTTCAGCCCTTGCCAT+AGG | 0.559803 | 5.4:-34725444 | None:intergenic |
| GCAACAATGGCTATGATGCA+AGG | 0.562706 | 5.4:+34723104 | None:intergenic |
| TAAGGGTGGTGAACAAGGAT+GGG | 0.577061 | 5.4:+34723382 | MS.gene99263:CDS |
| AGGGTATGAACGCCGCGTGA+AGG | 0.578411 | 5.4:-34723184 | None:intergenic |
| AGCACCATCCATATTATCCA+TGG | 0.581496 | 5.4:-34723309 | None:intergenic |
| ATCCATATTATCCATGGCAG+CGG | 0.587767 | 5.4:-34723303 | None:intergenic |
| CAAGTAGCCGAAGAGCGAGA+AGG | 0.588292 | 5.4:+34725390 | MS.gene99263:CDS |
| TGGCTGCTGAAGAACTGCAC+AGG | 0.598798 | 5.4:+34725364 | MS.gene99263:CDS |
| GTTTGAGCGGCAGCAACAAG+AGG | 0.600650 | 5.4:+34725299 | MS.gene99263:CDS |
| TATGGCAAGGGCTGAAGCAG+AGG | 0.602950 | 5.4:+34725446 | MS.gene99263:CDS |
| CAAGGATGATCCTATGGCAA+GGG | 0.606202 | 5.4:+34725434 | MS.gene99263:CDS |
| TCAAGGATGATCCTATGGCA+AGG | 0.610079 | 5.4:+34725433 | MS.gene99263:CDS |
| ACGTCTTTGATGTCTCCGAA+GGG | 0.635972 | 5.4:-34723203 | None:intergenic |
| GCTGCCATGGATAATATGGA+TGG | 0.650324 | 5.4:+34723305 | MS.gene99263:CDS |
| ATGCGGATACTTGGTTTGAG+CGG | 0.657420 | 5.4:+34725286 | MS.gene99263:CDS |
| AACAATGGCTATGATGCAAG+GGG | 0.661596 | 5.4:+34723106 | None:intergenic |
| CTTCCTGAAAAGATTAAGGG+TGG | 0.673751 | 5.4:+34723368 | MS.gene99263:CDS |
| AAGAACACTCTCTACGTCGG+TGG | 0.677653 | 5.4:+34723134 | MS.gene99263:CDS |
| CAAAAGAACACTCTCTACGT+CGG | 0.696745 | 5.4:+34723131 | MS.gene99263:CDS |
| GAACGAATCAATCCTTCACG+CGG | 0.736030 | 5.4:+34723172 | MS.gene99263:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATGAGATAAATAAA+AGG | + | chr5.4:34723522-34723541 | MS.gene99263:intron | 10.0% |
| !! | TTATTATGAGATAAATAAAA+GGG | + | chr5.4:34723523-34723542 | MS.gene99263:intron | 10.0% |
| !!! | ATTTTGAATTAGATTTTATT+TGG | + | chr5.4:34724238-34724257 | MS.gene99263:intron | 10.0% |
| !!! | TAAGTTGAAAAATTAATATT+AGG | - | chr5.4:34724364-34724383 | None:intergenic | 10.0% |
| !! | AAAAACAAATTCAATATTAG+GGG | + | chr5.4:34723965-34723984 | MS.gene99263:intron | 15.0% |
| !! | AAACTTAAATTCATTTCTTT+AGG | - | chr5.4:34723794-34723813 | None:intergenic | 15.0% |
| !! | ACAAAAACAAATTCAATATT+AGG | + | chr5.4:34723963-34723982 | MS.gene99263:intron | 15.0% |
| !! | CAAAAACAAATTCAATATTA+GGG | + | chr5.4:34723964-34723983 | MS.gene99263:intron | 15.0% |
| !! | TTTATTTGGTTAAATTGATT+CGG | + | chr5.4:34724252-34724271 | MS.gene99263:intron | 15.0% |
| !!! | AATATTTTCAATTTTCAGTT+TGG | + | chr5.4:34725259-34725278 | MS.gene99263:intron | 15.0% |
| !!! | ATATTTTCAATTTTCAGTTT+GGG | + | chr5.4:34725260-34725279 | MS.gene99263:intron | 15.0% |
| !!! | GTAGTTTTTATTATTTTTCT+TGG | + | chr5.4:34724739-34724758 | MS.gene99263:intron | 15.0% |
| !! | AAATTGTAATACTGAATTGA+AGG | + | chr5.4:34724809-34724828 | MS.gene99263:intron | 20.0% |
| !! | CTTAATGATTTAATGTTGAA+TGG | + | chr5.4:34723546-34723565 | MS.gene99263:intron | 20.0% |
| !! | TTATAAAGTAACCAAAACAT+CGG | - | chr5.4:34725157-34725176 | None:intergenic | 20.0% |
| !!! | AAATTGAGTTTGAAATAAGT+TGG | + | chr5.4:34724278-34724297 | MS.gene99263:intron | 20.0% |
| !!! | ATGTTAGTAGTTAATTTGTT+AGG | + | chr5.4:34724062-34724081 | MS.gene99263:intron | 20.0% |
| !!! | TGTTAGTAGTTAATTTGTTA+GGG | + | chr5.4:34724063-34724082 | MS.gene99263:intron | 20.0% |
| !!! | TTTTTATACAAGAAAAACCA+AGG | + | chr5.4:34724396-34724415 | MS.gene99263:intron | 20.0% |
| ! | AAGAGAATCAAAGATTTACT+TGG | - | chr5.4:34723416-34723435 | None:intergenic | 25.0% |
| ! | AATCATGGGTAGTTAAATTA+AGG | + | chr5.4:34723754-34723773 | MS.gene99263:intron | 25.0% |
| ! | ACTTTATAAGCTACATGTAT+AGG | + | chr5.4:34725168-34725187 | MS.gene99263:intron | 25.0% |
| ! | ATCTATCTGTACAATTATGA+TGG | + | chr5.4:34724608-34724627 | MS.gene99263:intron | 25.0% |
| ! | GAATTATATCATACAGGTAA+CGG | - | chr5.4:34724585-34724604 | None:intergenic | 25.0% |
| ! | GATCATGAATTATATCATAC+AGG | - | chr5.4:34724591-34724610 | None:intergenic | 25.0% |
| ! | TACTAAATAGTGTATTGCAA+AGG | - | chr5.4:34723820-34723839 | None:intergenic | 25.0% |
| ! | TCTATCTGTACAATTATGAT+GGG | + | chr5.4:34724609-34724628 | MS.gene99263:intron | 25.0% |
| ! | TGATTATGTGTTTATGCTTA+GGG | + | chr5.4:34723453-34723472 | MS.gene99263:intron | 25.0% |
| ! | TTGATTATGTGTTTATGCTT+AGG | + | chr5.4:34723452-34723471 | MS.gene99263:intron | 25.0% |
| !! | TTCAAGTTTATCAATTGTGT+CGG | + | chr5.4:34725221-34725240 | MS.gene99263:intron | 25.0% |
| !! | TTTTCAATATGGGAAATCAT+GGG | + | chr5.4:34723740-34723759 | MS.gene99263:intron | 25.0% |
| !!! | AGCGATTGATTTTTGATTTA+GGG | + | chr5.4:34724908-34724927 | MS.gene99263:intron | 25.0% |
| !!! | CTTTTTTTTATCCGATGTTT+TGG | + | chr5.4:34725143-34725162 | MS.gene99263:intron | 25.0% |
| !!! | GAAACTGTTTTTTCTTTTAC+AGG | + | chr5.4:34724036-34724055 | MS.gene99263:intron | 25.0% |
| !!! | GTTAGTAGTTAATTTGTTAG+GGG | + | chr5.4:34724064-34724083 | MS.gene99263:intron | 25.0% |
| !!! | TAGCGATTGATTTTTGATTT+AGG | + | chr5.4:34724907-34724926 | MS.gene99263:intron | 25.0% |
| !!! | TGAAAAACTGTTTTAAGAGA+AGG | + | chr5.4:34724476-34724495 | MS.gene99263:intron | 25.0% |
| !!! | TGATTTTTGATTTAGGGTTA+GGG | + | chr5.4:34724914-34724933 | MS.gene99263:intron | 25.0% |
| !!! | TTGATTTTTGATTTAGGGTT+AGG | + | chr5.4:34724913-34724932 | MS.gene99263:intron | 25.0% |
| ATACAAGAAAAACCAAGGTA+TGG | + | chr5.4:34724401-34724420 | MS.gene99263:intron | 30.0% | |
| CGGATAAAAAAAAGTAAGTG+TGG | - | chr5.4:34725137-34725156 | None:intergenic | 30.0% | |
| GAAAGAAGAAATTGAGATCA+AGG | + | chr5.4:34725416-34725435 | MS.gene99263:CDS | 30.0% | |
| GCATTTGCAATATTGTCAAA+TGG | + | chr5.4:34723621-34723640 | MS.gene99263:intron | 30.0% | |
| TGAAATGATCTCAACTTTCT+TGG | + | chr5.4:34725198-34725217 | MS.gene99263:intron | 30.0% | |
| TTACTGAACTCAAACATTAG+TGG | + | chr5.4:34723588-34723607 | MS.gene99263:intron | 30.0% | |
| TTGTCTTTCCATTGGAAATT+GGG | - | chr5.4:34724776-34724795 | None:intergenic | 30.0% | |
| TTTGAGAGTAAAAACAGTCA+AGG | - | chr5.4:34724317-34724336 | None:intergenic | 30.0% | |
| TTTGTCTTTCCATTGGAAAT+TGG | - | chr5.4:34724777-34724796 | None:intergenic | 30.0% | |
| ! | ATGAAATAGCTGCTATTTGA+CGG | - | chr5.4:34723849-34723868 | None:intergenic | 30.0% |
| ! | CTTTTCAATATGGGAAATCA+TGG | + | chr5.4:34723739-34723758 | MS.gene99263:intron | 30.0% |
| ! | TTTTCAATTTTCAGTTTGGG+CGG | + | chr5.4:34725263-34725282 | MS.gene99263:intron | 30.0% |
| !!! | ATCTTGTTTTGTCTTTCCAT+TGG | - | chr5.4:34724784-34724803 | None:intergenic | 30.0% |
| !!! | CAGAGAATTCGTTTTTTATC+CGG | + | chr5.4:34725065-34725084 | MS.gene99263:intron | 30.0% |
| AAATCCATTGACACTCAATC+CGG | - | chr5.4:34725087-34725106 | None:intergenic | 35.0% | |
| AAATGATCAACTCCATACCT+TGG | - | chr5.4:34724416-34724435 | None:intergenic | 35.0% | |
| ACGAAACGACGTCAAATTTA+AGG | + | chr5.4:34725036-34725055 | MS.gene99263:intron | 35.0% | |
| GCACTTCCTGAAAAGATTAA+GGG | + | chr5.4:34723365-34723384 | MS.gene99263:CDS | 35.0% | |
| TAGGGTTTGAGGATTGAATT+AGG | + | chr5.4:34723471-34723490 | MS.gene99263:intron | 35.0% | |
| TATCCATCATCAATGATGTG+CGG | - | chr5.4:34724555-34724574 | None:intergenic | 35.0% | |
| TGCACTTCCTGAAAAGATTA+AGG | + | chr5.4:34723364-34723383 | MS.gene99263:CDS | 35.0% | |
| ! | AACGACGTCAAATTTAAGGT+CGG | + | chr5.4:34725040-34725059 | MS.gene99263:intron | 35.0% |
| ! | AGCAATTTGTTCAAATTCCG+TGG | - | chr5.4:34723878-34723897 | None:intergenic | 35.0% |
| ! | CAGTATGTGTCTTTAGTTCA+TGG | + | chr5.4:34724007-34724026 | MS.gene99263:intron | 35.0% |
| ! | CTCTTTTCGTTCTCTTTCAA+TGG | - | chr5.4:34724879-34724898 | None:intergenic | 35.0% |
| !! | GTTAATTTGTTAGGGGATGA+TGG | + | chr5.4:34724071-34724090 | MS.gene99263:intron | 35.0% |
| !!! | CCTTAGCTGCTTTTCAATAT+GGG | + | chr5.4:34723730-34723749 | MS.gene99263:intron | 35.0% |
| !!! | CTTCGTCACTTTTCTTGAAA+GGG | + | chr5.4:34723271-34723290 | MS.gene99263:CDS | 35.0% |
| !!! | TCCTTAGCTGCTTTTCAATA+TGG | + | chr5.4:34723729-34723748 | MS.gene99263:intron | 35.0% |
| AAACCATTGGGCTACTCATT+TGG | + | chr5.4:34724200-34724219 | MS.gene99263:intron | 40.0% | |
| AAACGCGATGAGTTTGCAAT+AGG | + | chr5.4:34723679-34723698 | MS.gene99263:intron | 40.0% | |
| AAGATTAAGGGTGGTGAACA+AGG | + | chr5.4:34723377-34723396 | MS.gene99263:CDS | 40.0% | |
| AGAACGTTCCCAATTTCCAA+TGG | + | chr5.4:34724765-34724784 | MS.gene99263:intron | 40.0% | |
| AGAGAATAAAGCTGCTATGC+TGG | + | chr5.4:34725344-34725363 | MS.gene99263:CDS | 40.0% | |
| AGCACCATCCATATTATCCA+TGG | - | chr5.4:34723312-34723331 | None:intergenic | 40.0% | |
| ATCCATATTATCCATGGCAG+CGG | - | chr5.4:34723306-34723325 | None:intergenic | 40.0% | |
| ATTCCAAATGAGTAGCCCAA+TGG | - | chr5.4:34724206-34724225 | None:intergenic | 40.0% | |
| ATTTGACGTCGTTTCGTGAA+AGG | - | chr5.4:34725033-34725052 | None:intergenic | 40.0% | |
| CAAAAGAACACTCTCTACGT+CGG | + | chr5.4:34723131-34723150 | MS.gene99263:CDS | 40.0% | |
| CAAACCATCATTGTCAATCG+AGG | - | chr5.4:34723912-34723931 | None:intergenic | 40.0% | |
| CCCATATTGAAAAGCAGCTA+AGG | - | chr5.4:34723733-34723752 | None:intergenic | 40.0% | |
| CTATCCTCGATTGACAATGA+TGG | + | chr5.4:34723905-34723924 | MS.gene99263:intron | 40.0% | |
| CTTCCTGAAAAGATTAAGGG+TGG | + | chr5.4:34723368-34723387 | MS.gene99263:CDS | 40.0% | |
| GGACTTGCGTAAAAGTCATT+CGG | + | chr5.4:34724166-34724185 | MS.gene99263:intron | 40.0% | |
| GTGTCCACACTTAAACCATT+GGG | + | chr5.4:34724188-34724207 | MS.gene99263:intron | 40.0% | |
| GTGTTTATGCTTAGGGTTTG+AGG | + | chr5.4:34723460-34723479 | MS.gene99263:intron | 40.0% | |
| TAGGGGAATTGCTTAGAATG+TGG | + | chr5.4:34723982-34724001 | MS.gene99263:intron | 40.0% | |
| TGAGATCAAGGATGATCCTA+TGG | + | chr5.4:34725428-34725447 | MS.gene99263:CDS | 40.0% | |
| TTATCCGGATTGAGTGTCAA+TGG | + | chr5.4:34725080-34725099 | MS.gene99263:intron | 40.0% | |
| ! | AATGACTTTTACGCAAGTCC+AGG | - | chr5.4:34724166-34724185 | None:intergenic | 40.0% |
| ! | ACAGAGTATCCTTCCACTTA+GGG | - | chr5.4:34723939-34723958 | None:intergenic | 40.0% |
| ! | AGCTATTTCATTGTACGCCA+CGG | + | chr5.4:34723858-34723877 | MS.gene99263:intron | 40.0% |
| ! | ATGACTTTTACGCAAGTCCA+GGG | - | chr5.4:34724165-34724184 | None:intergenic | 40.0% |
| ! | ATTATGATGGGACACCAATG+CGG | + | chr5.4:34724621-34724640 | MS.gene99263:intron | 40.0% |
| ! | GGATTGAGTGTCAATGGATT+TGG | + | chr5.4:34725086-34725105 | MS.gene99263:intron | 40.0% |
| ! | TCACCACCCTTAATCTTTTC+AGG | - | chr5.4:34723374-34723393 | None:intergenic | 40.0% |
| !! | ACTCAGAAGCATCGTTCTTT+CGG | + | chr5.4:34723248-34723267 | MS.gene99263:CDS | 40.0% |
| !! | CAGCTTTATTCTCTGCTTCA+AGG | - | chr5.4:34725338-34725357 | None:intergenic | 40.0% |
| !! | TATCAATTGTGTCGGTTGTG+TGG | + | chr5.4:34725229-34725248 | MS.gene99263:intron | 40.0% |
| !!! | GCTTCGTCACTTTTCTTGAA+AGG | + | chr5.4:34723270-34723289 | MS.gene99263:CDS | 40.0% |
| !!! | TAGGGTTAGGGTTTTGTTGA+AGG | + | chr5.4:34724926-34724945 | MS.gene99263:intron | 40.0% |
| AACGATGCTTCTGAGTTGCT+TGG | - | chr5.4:34723244-34723263 | None:intergenic | 45.0% | |
| AATGGTTGCTCTAGCATAGC+AGG | + | chr5.4:34723639-34723658 | MS.gene99263:intron | 45.0% | |
| ACGTCTTTGATGTCTCCGAA+GGG | - | chr5.4:34723206-34723225 | None:intergenic | 45.0% | |
| AGCTTCTGCCTTCTGATGTT+AGG | + | chr5.4:34724104-34724123 | MS.gene99263:intron | 45.0% | |
| ATGGTTGCTCTAGCATAGCA+GGG | + | chr5.4:34723640-34723659 | MS.gene99263:intron | 45.0% | |
| CAAGGATGATCCTATGGCAA+GGG | + | chr5.4:34725434-34725453 | MS.gene99263:CDS | 45.0% | |
| CCAATGCGGCTTATGAATTC+TGG | + | chr5.4:34724635-34724654 | MS.gene99263:intron | 45.0% | |
| CCAGAATTCATAAGCCGCAT+TGG | - | chr5.4:34724638-34724657 | None:intergenic | 45.0% | |
| CTTCTGCCTTCTGATGTTAG+GGG | + | chr5.4:34724106-34724125 | MS.gene99263:intron | 45.0% | |
| GAACGAATCAATCCTTCACG+CGG | + | chr5.4:34723172-34723191 | MS.gene99263:CDS | 45.0% | |
| GCTGCCATGGATAATATGGA+TGG | + | chr5.4:34723305-34723324 | MS.gene99263:CDS | 45.0% | |
| GCTTCTGCCTTCTGATGTTA+GGG | + | chr5.4:34724105-34724124 | MS.gene99263:intron | 45.0% | |
| GGTGTCCACACTTAAACCAT+TGG | + | chr5.4:34724187-34724206 | MS.gene99263:intron | 45.0% | |
| GTAGCCCAATGGTTTAAGTG+TGG | - | chr5.4:34724195-34724214 | None:intergenic | 45.0% | |
| GTTTGTTTCCCCTAAGTGGA+AGG | + | chr5.4:34723927-34723946 | MS.gene99263:intron | 45.0% | |
| TAAGGGTGGTGAACAAGGAT+GGG | + | chr5.4:34723382-34723401 | MS.gene99263:CDS | 45.0% | |
| TCAAGGATGATCCTATGGCA+AGG | + | chr5.4:34725433-34725452 | MS.gene99263:CDS | 45.0% | |
| TTAAGGGTGGTGAACAAGGA+TGG | + | chr5.4:34723381-34723400 | MS.gene99263:CDS | 45.0% | |
| TTCCGCTGCCATGGATAATA+TGG | + | chr5.4:34723301-34723320 | MS.gene99263:CDS | 45.0% | |
| TTCTGAGTTGCTTGGTCAAG+CGG | - | chr5.4:34723236-34723255 | None:intergenic | 45.0% | |
| TTTCTCTCCTTCTCGCTCTT+CGG | - | chr5.4:34725400-34725419 | None:intergenic | 45.0% | |
| ! | ATGCGGATACTTGGTTTGAG+CGG | + | chr5.4:34725286-34725305 | MS.gene99263:CDS | 45.0% |
| ! | ATGGATGGTGCTGAACTCTA+TGG | + | chr5.4:34723320-34723339 | MS.gene99263:CDS | 45.0% |
| ! | ATTTTCAGTTTGGGCGGATG+CGG | + | chr5.4:34725269-34725288 | MS.gene99263:intron | 45.0% |
| ! | CACAGAGTATCCTTCCACTT+AGG | - | chr5.4:34723940-34723959 | None:intergenic | 45.0% |
| ! | CAGAGTATCCTTCCACTTAG+GGG | - | chr5.4:34723938-34723957 | None:intergenic | 45.0% |
| ! | GTCAATGGATTTGGCTTCTC+TGG | + | chr5.4:34725095-34725114 | MS.gene99263:intron | 45.0% |
| !! | AAGTGTGGCCTTTGAAACGA+GGG | - | chr5.4:34725122-34725141 | None:intergenic | 45.0% |
| !! | GATGGTTTGTTTCCCCTAAG+TGG | + | chr5.4:34723923-34723942 | MS.gene99263:intron | 45.0% |
| !! | TAAGTGTGGCCTTTGAAACG+AGG | - | chr5.4:34725123-34725142 | None:intergenic | 45.0% |
| !!! | GATGTGCGGAGGCATTTTAA+GGG | - | chr5.4:34724541-34724560 | None:intergenic | 45.0% |
| !!! | TGATGTGCGGAGGCATTTTA+AGG | - | chr5.4:34724542-34724561 | None:intergenic | 45.0% |
| AAGAACACTCTCTACGTCGG+TGG | + | chr5.4:34723134-34723153 | MS.gene99263:CDS | 50.0% | |
| CACGTCTTTGATGTCTCCGA+AGG | - | chr5.4:34723207-34723226 | None:intergenic | 50.0% | |
| CCATCATCAATGATGTGCGG+AGG | - | chr5.4:34724552-34724571 | None:intergenic | 50.0% | |
| CCTCCGCACATCATTGATGA+TGG | + | chr5.4:34724549-34724568 | MS.gene99263:intron | 50.0% | |
| GCCTTCTGATGTTAGGGGAT+GGG | + | chr5.4:34724111-34724130 | MS.gene99263:intron | 50.0% | |
| TCCCATCCCCTAACATCAGA+AGG | - | chr5.4:34724115-34724134 | None:intergenic | 50.0% | |
| TCTCTACGTCGGTGGTTTAG+CGG | + | chr5.4:34723142-34723161 | MS.gene99263:CDS | 50.0% | |
| TCTCTGGACCCTCGTTTCAA+AGG | + | chr5.4:34725111-34725130 | MS.gene99263:intron | 50.0% | |
| TGCCTTCTGATGTTAGGGGA+TGG | + | chr5.4:34724110-34724129 | MS.gene99263:intron | 50.0% | |
| TTCTGATGTTAGGGGATGGG+AGG | + | chr5.4:34724114-34724133 | MS.gene99263:intron | 50.0% | |
| AGGGCTGAAGCAGAGGTTGT+TGG | + | chr5.4:34725453-34725472 | MS.gene99263:CDS | 55.0% | |
| CAAGTAGCCGAAGAGCGAGA+AGG | + | chr5.4:34725390-34725409 | MS.gene99263:CDS | 55.0% | |
| GTTTGAGCGGCAGCAACAAG+AGG | + | chr5.4:34725299-34725318 | MS.gene99263:CDS | 55.0% | |
| TAGCTGCTGCGATTGAACCC+TGG | + | chr5.4:34724145-34724164 | MS.gene99263:intron | 55.0% | |
| TATGGCAAGGGCTGAAGCAG+AGG | + | chr5.4:34725446-34725465 | MS.gene99263:CDS | 55.0% | |
| TCTGCTTCAGCCCTTGCCAT+AGG | - | chr5.4:34725447-34725466 | None:intergenic | 55.0% | |
| TGGCTGCTGAAGAACTGCAC+AGG | + | chr5.4:34725364-34725383 | MS.gene99263:CDS | 55.0% | |
| TTTGGGCGGATGCGGATACT+TGG | + | chr5.4:34725277-34725296 | MS.gene99263:CDS | 55.0% | |
| AGGGTATGAACGCCGCGTGA+AGG | - | chr5.4:34723187-34723206 | None:intergenic | 60.0% | |
| CACGCGGCGTTCATACCCTT+CGG | + | chr5.4:34723188-34723207 | MS.gene99263:CDS | 60.0% | |
| CGTCGGTGGTTTAGCGGAAG+AGG | + | chr5.4:34723148-34723167 | MS.gene99263:CDS | 60.0% | |
| GGAAGATGCTTCCGCTGCCA+TGG | + | chr5.4:34723292-34723311 | MS.gene99263:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 34723110 | 34725482 | 34723110 | ID=MS.gene99263 |
| chr5.4 | mRNA | 34723110 | 34725482 | 34723110 | ID=MS.gene99263.t1;Parent=MS.gene99263 |
| chr5.4 | exon | 34723110 | 34723416 | 34723110 | ID=MS.gene99263.t1.exon1;Parent=MS.gene99263.t1 |
| chr5.4 | CDS | 34723110 | 34723416 | 34723110 | ID=cds.MS.gene99263.t1;Parent=MS.gene99263.t1 |
| chr5.4 | exon | 34725277 | 34725482 | 34725277 | ID=MS.gene99263.t1.exon2;Parent=MS.gene99263.t1 |
| chr5.4 | CDS | 34725277 | 34725482 | 34725277 | ID=cds.MS.gene99263.t1;Parent=MS.gene99263.t1 |
| Gene Sequence |
| Protein sequence |
