AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99397


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99397.t1 MTR_5g087710 82.262 389 19 3 1 339 3 391 0.0 622
MS.gene99397.t1 MTR_3g079180 75.321 312 77 0 28 339 75 386 1.24e-179 502
MS.gene99397.t1 MTR_3g079170 76.015 271 51 1 59 329 26 282 1.56e-153 432
MS.gene99397.t1 MTR_3g099460 60.714 308 119 2 32 338 21 327 2.97e-127 367
MS.gene99397.t1 MTR_3g099460 60.714 308 119 2 32 338 77 383 1.54e-125 365
MS.gene99397.t1 MTR_3g099460 60.714 308 119 2 32 338 84 390 2.61e-125 365
MS.gene99397.t1 MTR_1g069430 50.654 306 149 2 32 337 74 377 4.54e-105 313
MS.gene99397.t1 MTR_6g068930 49.026 308 154 3 32 339 73 377 3.60e-101 303
MS.gene99397.t1 MTR_7g099040 49.013 304 153 2 32 335 76 377 1.59e-98 296
MS.gene99397.t1 MTR_3g089940 44.337 309 168 4 32 339 75 380 9.74e-92 279
MS.gene99397.t1 MTR_3g089977 43.161 329 179 6 10 337 57 378 1.01e-91 279
MS.gene99397.t1 MTR_3g089940 44.337 309 168 4 32 339 75 380 1.13e-91 279
MS.gene99397.t1 MTR_3g089970 42.900 331 181 6 10 339 58 381 5.62e-91 277
MS.gene99397.t1 MTR_7g068330 47.078 308 159 3 32 337 80 385 5.31e-90 275
MS.gene99397.t1 MTR_7g068320 45.260 327 172 5 14 337 71 393 4.61e-87 267
MS.gene99397.t1 MTR_5g045710 43.648 307 167 5 32 337 73 374 2.87e-81 252
MS.gene99397.t1 MTR_3g099460 61.111 216 83 1 32 246 77 292 2.07e-79 245
MS.gene99397.t1 MTR_0001s0660 43.279 305 166 4 32 335 73 371 2.11e-79 250
MS.gene99397.t1 MTR_3g099460 61.111 216 83 1 32 246 84 299 2.62e-79 245
MS.gene99397.t1 MTR_5g045710 42.857 294 162 5 45 337 3 291 1.29e-76 237
MS.gene99397.t1 MTR_3g089940 42.268 291 160 6 10 299 57 340 6.01e-75 235
MS.gene99397.t1 MTR_3g089940 42.268 291 160 6 10 299 57 340 6.21e-75 235
MS.gene99397.t1 MTR_8g095220 30.508 295 192 10 46 335 136 422 2.42e-26 108
MS.gene99397.t1 MTR_8g095220 34.783 161 100 4 46 203 136 294 1.98e-16 79.3
MS.gene99397.t1 MTR_6g465010 24.503 302 192 10 32 328 66 336 2.71e-13 70.5
MS.gene99397.t1 MTR_6g466320 24.503 302 192 10 32 328 82 352 3.73e-13 70.1
MS.gene99397.t1 MTR_6g465010 24.503 302 192 10 32 328 82 352 3.73e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99397.t1 AT5G42250 67.485 326 103 2 13 337 66 389 5.03e-162 458
MS.gene99397.t1 AT1G22430 59.547 309 123 2 32 339 81 388 6.34e-132 382
MS.gene99397.t1 AT1G22430 59.547 309 123 2 32 339 81 388 6.34e-132 382
MS.gene99397.t1 AT4G22110 59.871 309 122 2 32 339 82 389 1.64e-131 380
MS.gene99397.t1 AT4G22110 59.871 309 122 2 32 339 82 389 1.64e-131 380
MS.gene99397.t1 AT1G22440 59.223 309 124 2 32 339 79 386 3.66e-129 374
MS.gene99397.t1 AT5G43940 50.658 304 148 2 32 335 74 375 3.46e-106 316
MS.gene99397.t1 AT5G43940 50.658 304 148 2 32 335 86 387 6.88e-106 315
MS.gene99397.t1 AT5G24760 49.675 308 152 3 32 339 48 352 9.15e-102 303
MS.gene99397.t1 AT5G24760 49.675 308 152 3 32 339 48 352 9.15e-102 303
MS.gene99397.t1 AT5G24760 49.675 308 152 3 32 339 77 381 1.54e-101 304
MS.gene99397.t1 AT1G64710 47.573 309 158 4 31 337 5 311 5.38e-100 298
MS.gene99397.t1 AT1G64710 47.403 308 158 4 32 337 52 357 2.49e-98 295
MS.gene99397.t1 AT1G64710 47.403 308 158 4 32 337 75 380 7.68e-98 295
MS.gene99397.t1 AT1G32780 47.634 317 155 5 32 339 76 390 1.52e-92 281
MS.gene99397.t1 AT1G77120 43.293 328 180 4 10 337 56 377 2.05e-91 278
MS.gene99397.t1 AT1G22430 59.072 237 90 3 32 266 81 312 3.99e-90 272
MS.gene99397.t1 AT5G24760 49.259 270 134 3 70 339 1 267 1.59e-87 264
MS.gene99397.t1 AT1G22430 59.474 190 76 1 32 220 81 270 1.33e-74 232
MS.gene99397.t1 AT1G22430 59.474 190 76 1 32 220 81 270 1.33e-74 232
MS.gene99397.t1 AT4G22110 62.162 185 69 1 32 215 82 266 2.38e-74 231
MS.gene99397.t1 AT5G63620 27.273 286 200 6 46 329 138 417 7.21e-26 107
MS.gene99397.t1 AT5G63620 27.273 286 200 6 46 329 138 417 8.28e-26 107
MS.gene99397.t1 AT5G63620 28.302 159 113 1 46 203 138 296 2.16e-15 76.3
MS.gene99397.t1 AT5G51970 23.779 307 188 10 32 328 84 354 5.43e-11 63.5
MS.gene99397.t1 AT5G51970 23.779 307 188 10 32 328 84 354 5.43e-11 63.5

Find 63 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACACACCTTTACATCTTA+TGG 0.127584 5.1:+69078530 None:intergenic
ACTCTTATGGGGTCTATATT+TGG 0.181223 5.1:-69075731 MS.gene99397:CDS
TTATTATCAGGAACTCAATT+TGG 0.208168 5.1:-69075501 MS.gene99397:intron
TGTGGAGCAACTAGGATTAT+AGG 0.276027 5.1:-69076545 MS.gene99397:CDS
CTTTACATCTTATGGGTTGC+TGG 0.294417 5.1:+69078538 None:intergenic
ACTAGATTCACTGATCTAAA+TGG 0.304247 5.1:-69077252 MS.gene99397:CDS
CTTTGTAAATCCTGGAGAAT+TGG 0.307283 5.1:-69076333 MS.gene99397:CDS
ATTTATTCAGCAAAGAAGTT+TGG 0.322022 5.1:-69076365 MS.gene99397:intron
AACACACCTTTACATCTTAT+GGG 0.322640 5.1:+69078531 None:intergenic
GCCCTGTTGGGAGGAATTGC+TGG 0.324195 5.1:+69077147 None:intergenic
TTTCAAGGGAAAACTCTTAT+GGG 0.339520 5.1:-69075743 MS.gene99397:CDS
CATAGTTATCCCAATCTTCA+TGG 0.380845 5.1:-69077373 MS.gene99397:CDS
AATGTCTTCGGTGTGTGATT+TGG 0.385429 5.1:-69075409 MS.gene99397:CDS
ATCCAGCAATTCCTCCCAAC+AGG 0.388742 5.1:-69077149 MS.gene99397:CDS
CTCACATTGCCAAAGTTCTT+AGG 0.391797 5.1:-69077705 MS.gene99397:intron
TCACAATCAGCCATGAAGAT+TGG 0.401526 5.1:+69077363 None:intergenic
CTCAGTTGTGGTGTATCAAC+AGG 0.405866 5.1:-69077117 MS.gene99397:intron
GAAAACAGCAAATGTTGAAC+CGG 0.406203 5.1:-69076989 MS.gene99397:CDS
CACAATCAGCCATGAAGATT+GGG 0.418681 5.1:+69077364 None:intergenic
CCTTCACTTGTTGCTACAGC+AGG 0.419923 5.1:+69078561 None:intergenic
GCTGAAGGAGCTAGACTTTG+TGG 0.441563 5.1:-69076563 MS.gene99397:CDS
TGGATCAATCTTGAGTAGAT+TGG 0.449026 5.1:+69077167 None:intergenic
GTCACAGACTTTGTAAATCC+TGG 0.452717 5.1:-69076341 MS.gene99397:CDS
GGAAAACAAATCTGTGAGTC+AGG 0.454117 5.1:-69076312 MS.gene99397:CDS
ATCCAAGGTTTAATATCAAA+AGG 0.456805 5.1:+69077291 None:intergenic
AACTAGAGACAAATATGAAA+TGG 0.460302 5.1:+69077217 None:intergenic
CTGAGTAGGCATGCCCTGTT+GGG 0.463431 5.1:+69077135 None:intergenic
TGACTAAAGGAGAATGTCTT+CGG 0.469794 5.1:-69075421 MS.gene99397:CDS
CGTTGCAGACCTAAGAACTT+TGG 0.470530 5.1:+69077696 None:intergenic
TACAGCAGGTTTATCTTCCA+TGG 0.480785 5.1:+69078575 None:intergenic
ATGTGTTGGTATGGCATCAT+TGG 0.482347 5.1:-69076246 MS.gene99397:CDS
CTAGACTTTGTGGAGCAACT+AGG 0.495288 5.1:-69076553 MS.gene99397:CDS
TTGATACTCAACTTAGATCC+TGG 0.495669 5.1:+69075782 None:intergenic
TTGCTTTGAATGTGTTGGTA+TGG 0.503086 5.1:-69076255 MS.gene99397:CDS
ACTGAGTAGGCATGCCCTGT+TGG 0.518598 5.1:+69077134 None:intergenic
CTTATGGGGTCTATATTTGG+AGG 0.522177 5.1:-69075728 MS.gene99397:CDS
AGCATATGCTTCATGTAGAA+AGG 0.522535 5.1:-69076216 MS.gene99397:intron
GAAGTAACAGAAGTTACAAA+GGG 0.527117 5.1:-69077399 MS.gene99397:CDS
CAGCAACCCATAAGATGTAA+AGG 0.539746 5.1:-69078537 MS.gene99397:intron
GATTATTGCTTTGAATGTGT+TGG 0.539967 5.1:-69076260 MS.gene99397:CDS
GGAAGTAACAGAAGTTACAA+AGG 0.541099 5.1:-69077400 MS.gene99397:CDS
ATGTTAGGAGTGGACAAGCC+AGG 0.552820 5.1:-69075800 MS.gene99397:CDS
ATGGTTTCCTAGGTGGCTGA+AGG 0.560673 5.1:-69076578 MS.gene99397:intron
AAGAACGGGTACATCAGACT+TGG 0.560726 5.1:+69075697 None:intergenic
TTCAAGGGAAAACTCTTATG+GGG 0.567369 5.1:-69075742 MS.gene99397:CDS
GTTATCATAGAGATGACTGA+TGG 0.568363 5.1:-69076290 MS.gene99397:CDS
TTGATACACCACAACTGAGT+AGG 0.578447 5.1:+69077121 None:intergenic
AAAACAGCAAATGTTGAACC+GGG 0.583487 5.1:-69076988 MS.gene99397:CDS
CAAAAGGAAACTTTGAACAA+AGG 0.590036 5.1:+69077307 None:intergenic
TCTTCGGTGTGTGATTTGGA+TGG 0.597231 5.1:-69075405 MS.gene99397:CDS
AGCAACTAGGATTATAGGTG+TGG 0.598387 5.1:-69076540 MS.gene99397:CDS
TCCAGGGTTGTGGAAAGTGT+TGG 0.599735 5.1:-69077426 MS.gene99397:intron
AGTAGGCATGCCCTGTTGGG+AGG 0.607700 5.1:+69077138 None:intergenic
AGAACGGGTACATCAGACTT+GGG 0.607717 5.1:+69075698 None:intergenic
CCTGCTGTAGCAACAAGTGA+AGG 0.614035 5.1:-69078561 MS.gene99397:CDS
GGTTGTGGAAAGTGTTGGAG+AGG 0.628245 5.1:-69077421 MS.gene99397:CDS
TCCAGCAATTCCTCCCAACA+GGG 0.631418 5.1:-69077148 MS.gene99397:CDS
AGGGCATGCCTACTCAGTTG+TGG 0.636767 5.1:-69077129 MS.gene99397:CDS
AAAATAGCTACTGTCGACCC+CGG 0.636859 5.1:+69076970 None:intergenic
ATCATAGAGATGACTGATGG+AGG 0.637658 5.1:-69076287 MS.gene99397:CDS
ATTTAGATCAGTGAATCTAG+TGG 0.650022 5.1:+69077254 None:intergenic
GTATCATATCTAAGCATCCA+AGG 0.653021 5.1:+69077276 None:intergenic
AAACAGCAAATGTTGAACCG+GGG 0.725303 5.1:-69076987 MS.gene99397:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATCAAATTAAATTGAA+TGG + chr5.1:69075572-69075591 None:intergenic 10.0%
!!! CTAATTTTTTAACTTTTTTT+TGG - chr5.1:69076219-69076238 MS.gene99397:CDS 10.0%
!!! TTTTTTTTTTTTACTTTTGA+AGG - chr5.1:69075926-69075945 MS.gene99397:intron 10.0%
!! AACAAAAGATACAATATAAT+TGG + chr5.1:69077251-69077270 None:intergenic 15.0%
!! AATCAAAAAAAGAAATTACA+TGG + chr5.1:69078323-69078342 None:intergenic 15.0%
!! ATACAAATTAATAAAATGCA+TGG + chr5.1:69076008-69076027 None:intergenic 15.0%
!!! AATAGTTTTTTTTTTTGTGA+AGG - chr5.1:69075524-69075543 MS.gene99397:intron 15.0%
!!! TAGTAATGTAAACAAATTTT+TGG - chr5.1:69078418-69078437 MS.gene99397:intron 15.0%
!!! TGATCAAACATTAATTTTTA+GGG - chr5.1:69076944-69076963 MS.gene99397:intron 15.0%
!!! TTGATCAAACATTAATTTTT+AGG - chr5.1:69076943-69076962 MS.gene99397:intron 15.0%
!! AAATGCTTATTGTAATTGAA+TGG - chr5.1:69077373-69077392 MS.gene99397:CDS 20.0%
!! CAAAAGAAAAACATAAACTA+AGG + chr5.1:69077062-69077081 None:intergenic 20.0%
!! TGTAATGTTTATAATGTACT+TGG - chr5.1:69076374-69076393 MS.gene99397:intron 20.0%
!!! AATTAATTTTTATGTGATCC+AGG - chr5.1:69076527-69076546 MS.gene99397:CDS 20.0%
!!! ATTAATTTTTATGTGATCCA+GGG - chr5.1:69076528-69076547 MS.gene99397:CDS 20.0%
!!! CAAATTTTTGGACTTTTTAT+TGG - chr5.1:69078430-69078449 MS.gene99397:intron 20.0%
!!! CTTTGTTTTAACAATGTTAT+TGG - chr5.1:69077830-69077849 MS.gene99397:intron 20.0%
!!! GATCAAACATTAATTTTTAG+GGG - chr5.1:69076945-69076964 MS.gene99397:CDS 20.0%
!!! TTACCAATTTCAAATTTTTC+TGG + chr5.1:69077464-69077483 None:intergenic 20.0%
!!! TTTTTTCTCCAATTATTATC+AGG - chr5.1:69078457-69078476 MS.gene99397:intron 20.0%
! AAAAACAATTATGTTAGGAG+TGG - chr5.1:69078160-69078179 MS.gene99397:intron 25.0%
! AAACTTCTTTGCTGAATAAA+TGG + chr5.1:69077606-69077625 None:intergenic 25.0%
! AAATGAACACAACCTAATTA+GGG + chr5.1:69076063-69076082 None:intergenic 25.0%
! AACTAGAGACAAATATGAAA+TGG + chr5.1:69076756-69076775 None:intergenic 25.0%
! AACTTCTTTGCTGAATAAAT+GGG + chr5.1:69077605-69077624 None:intergenic 25.0%
! AAGTTATAAGTTGTTCTCAT+AGG + chr5.1:69077215-69077234 None:intergenic 25.0%
! ATAAAATGTTACCAAAAGAG+AGG + chr5.1:69078366-69078385 None:intergenic 25.0%
! ATATTTCTCATTCCCTAATT+AGG - chr5.1:69076048-69076067 MS.gene99397:intron 25.0%
! ATCCAAGGTTTAATATCAAA+AGG + chr5.1:69076682-69076701 None:intergenic 25.0%
! ATTGAGTTCCTGATAATAAT+TGG + chr5.1:69078468-69078487 None:intergenic 25.0%
! ATTGTGGATGAAAAAAAATG+TGG + chr5.1:69077946-69077965 None:intergenic 25.0%
! ATTTATTCAGCAAAGAAGTT+TGG - chr5.1:69077605-69077624 MS.gene99397:intron 25.0%
! TAAATGAACACAACCTAATT+AGG + chr5.1:69076064-69076083 None:intergenic 25.0%
! TTATTATCAGGAACTCAATT+TGG - chr5.1:69078469-69078488 MS.gene99397:intron 25.0%
! TTTAGCATACAAAACTACAA+AGG + chr5.1:69077355-69077374 None:intergenic 25.0%
!! AAGCCAGAAAAATTTGAAAT+TGG - chr5.1:69077458-69077477 MS.gene99397:intron 25.0%
!! ATTTAGTTCGGATTGTTAAA+CGG + chr5.1:69076439-69076458 None:intergenic 25.0%
!! TTCCTTTTGATATTAAACCT+TGG - chr5.1:69076677-69076696 MS.gene99397:intron 25.0%
!!! AAAATTGGTGTTTTGATTTC+AGG - chr5.1:69078130-69078149 MS.gene99397:intron 25.0%
!!! AAACATTAATTTTTAGGGGT+AGG - chr5.1:69076949-69076968 MS.gene99397:CDS 25.0%
!!! AAATTGGTGTTTTGATTTCA+GGG - chr5.1:69078131-69078150 MS.gene99397:intron 25.0%
!!! AGTTATGTTTTAATGAGTCA+TGG + chr5.1:69075475-69075494 None:intergenic 25.0%
!!! GCTTTTGATTTATTGACTAA+AGG - chr5.1:69078536-69078555 MS.gene99397:intron 25.0%
!!! GTTATGTTTTAATGAGTCAT+GGG + chr5.1:69075474-69075493 None:intergenic 25.0%
!!! TATCATTTTTTGGAAAATGC+AGG - chr5.1:69075786-69075805 MS.gene99397:CDS 25.0%
!!! TTAAAAATTGGTAACGATGA+AGG + chr5.1:69076403-69076422 None:intergenic 25.0%
!!! TTTTTTTCATCCACAATGTT+TGG - chr5.1:69077949-69077968 MS.gene99397:intron 25.0%
AAACACACCTTTACATCTTA+TGG + chr5.1:69075443-69075462 None:intergenic 30.0%
AACACACCTTTACATCTTAT+GGG + chr5.1:69075442-69075461 None:intergenic 30.0%
AAGATCTCCTAAATAATCAG+TGG + chr5.1:69075700-69075719 None:intergenic 30.0%
AATATCGCGTTAAACAGAAT+TGG + chr5.1:69076352-69076371 None:intergenic 30.0%
ACAATCCGAACTAAATATGT+TGG - chr5.1:69076443-69076462 MS.gene99397:intron 30.0%
ACTAGATTCACTGATCTAAA+TGG - chr5.1:69076718-69076737 MS.gene99397:intron 30.0%
ATGTAGCGTTTAAAAAGAAC+GGG + chr5.1:69078290-69078309 None:intergenic 30.0%
ATTTAGATCAGTGAATCTAG+TGG + chr5.1:69076719-69076738 None:intergenic 30.0%
CAAAAGGAAACTTTGAACAA+AGG + chr5.1:69076666-69076685 None:intergenic 30.0%
CATGTAGCGTTTAAAAAGAA+CGG + chr5.1:69078291-69078310 None:intergenic 30.0%
GAAGTAACAGAAGTTACAAA+GGG - chr5.1:69076571-69076590 MS.gene99397:intron 30.0%
GATTATTTAGGAGATCTTTG+TGG - chr5.1:69075702-69075721 MS.gene99397:CDS 30.0%
GTTAGCTCAAATAATGAAAG+TGG + chr5.1:69076314-69076333 None:intergenic 30.0%
TGAAAAAAAATGTGGTTGGA+AGG + chr5.1:69077938-69077957 None:intergenic 30.0%
TGAGACCAACATATTTAGTT+CGG + chr5.1:69076451-69076470 None:intergenic 30.0%
TGGATGAAAAAAAATGTGGT+TGG + chr5.1:69077942-69077961 None:intergenic 30.0%
TGGGGAAAAACAATTATGTT+AGG - chr5.1:69078155-69078174 MS.gene99397:intron 30.0%
TTCCTTCCTTTACCTAATTA+GGG + chr5.1:69076105-69076124 None:intergenic 30.0%
TTGTAATTGAATGGTTTCCT+AGG - chr5.1:69077382-69077401 MS.gene99397:CDS 30.0%
TTTCAAGGGAAAACTCTTAT+GGG - chr5.1:69078227-69078246 MS.gene99397:intron 30.0%
! AAAACTACAAAGGTTTTGCT+TGG + chr5.1:69077345-69077364 None:intergenic 30.0%
! ATTTGCAAATTTTGTAGCTG+CGG - chr5.1:69075654-69075673 MS.gene99397:intron 30.0%
! GATTATTGCTTTGAATGTGT+TGG - chr5.1:69077710-69077729 MS.gene99397:CDS 30.0%
! TAAGAGTTTTCCCTTGAAAA+AGG + chr5.1:69078226-69078245 None:intergenic 30.0%
! TACTTGTTGAAAGAATGGAT+TGG - chr5.1:69078107-69078126 MS.gene99397:intron 30.0%
!! AGTTGGTAGAGATTAGTAAT+CGG + chr5.1:69077878-69077897 None:intergenic 30.0%
!! GAAAGAATGGATTGGAAAAT+TGG - chr5.1:69078115-69078134 MS.gene99397:intron 30.0%
!! TTTTCAAGGGAAAACTCTTA+TGG - chr5.1:69078226-69078245 MS.gene99397:intron 30.0%
!!! GTCACAGTGATATCATTTTT+TGG - chr5.1:69075776-69075795 MS.gene99397:CDS 30.0%
!!! TAGTTTTAGTGAGTATACTG+TGG - chr5.1:69076771-69076790 MS.gene99397:intron 30.0%
AAAACAGCAAATGTTGAACC+GGG - chr5.1:69076982-69077001 MS.gene99397:CDS 35.0%
ACTCTTATGGGGTCTATATT+TGG - chr5.1:69078239-69078258 MS.gene99397:intron 35.0%
AGATTAGTAATCGGCAAAGT+CGG + chr5.1:69077869-69077888 None:intergenic 35.0%
AGCATATGCTTCATGTAGAA+AGG - chr5.1:69077754-69077773 MS.gene99397:intron 35.0%
AGTATCCTTGGAAAAATTGC+AGG + chr5.1:69075957-69075976 None:intergenic 35.0%
CATAGTTATCCCAATCTTCA+TGG - chr5.1:69076597-69076616 MS.gene99397:intron 35.0%
CTCATTCCCTAATTAGGTAA+AGG - chr5.1:69076096-69076115 MS.gene99397:intron 35.0%
CTTCCTTCCTTTACCTAATT+AGG + chr5.1:69076106-69076125 None:intergenic 35.0%
CTTCGCTCACTCTTAAAAAT+TGG + chr5.1:69076415-69076434 None:intergenic 35.0%
CTTTGTAAATCCTGGAGAAT+TGG - chr5.1:69077637-69077656 MS.gene99397:intron 35.0%
GAAAACAGCAAATGTTGAAC+CGG - chr5.1:69076981-69077000 MS.gene99397:CDS 35.0%
GGAAGTAACAGAAGTTACAA+AGG - chr5.1:69076570-69076589 MS.gene99397:intron 35.0%
GTATCATATCTAAGCATCCA+AGG + chr5.1:69076697-69076716 None:intergenic 35.0%
GTTATCATAGAGATGACTGA+TGG - chr5.1:69077680-69077699 MS.gene99397:intron 35.0%
TAATTGAATGGTTTCCTAGG+TGG - chr5.1:69077385-69077404 MS.gene99397:CDS 35.0%
TCAACAGGTATGCAAATTCA+AGG - chr5.1:69076868-69076887 MS.gene99397:intron 35.0%
TGACTAAAGGAGAATGTCTT+CGG - chr5.1:69078549-69078568 MS.gene99397:CDS 35.0%
TGGATCAATCTTGAGTAGAT+TGG + chr5.1:69076806-69076825 None:intergenic 35.0%
TTCAAGGGAAAACTCTTATG+GGG - chr5.1:69078228-69078247 MS.gene99397:intron 35.0%
TTCCCTAATTAGGTAAAGGA+AGG - chr5.1:69076100-69076119 MS.gene99397:intron 35.0%
TTGATACTCAACTTAGATCC+TGG + chr5.1:69078191-69078210 None:intergenic 35.0%
TTGCACACAACTGAAGAATA+TGG + chr5.1:69078058-69078077 None:intergenic 35.0%
TTTATTCTACCCTGTTTGTG+TGG - chr5.1:69076132-69076151 MS.gene99397:intron 35.0%
! CGTTCTTTTTAAACGCTACA+TGG - chr5.1:69078289-69078308 MS.gene99397:intron 35.0%
! CTGCATACTTGTTGAAAGAA+TGG - chr5.1:69078102-69078121 MS.gene99397:intron 35.0%
! GCAATTTTTCCAAGGATACT+GGG - chr5.1:69075957-69075976 MS.gene99397:intron 35.0%
! GGATGATTTTGTTACACATG+AGG - chr5.1:69078490-69078509 MS.gene99397:intron 35.0%
! TATGATCTCTTCCTCTCTTT+TGG - chr5.1:69078352-69078371 MS.gene99397:intron 35.0%
! TGATTTTGTTACACATGAGG+TGG - chr5.1:69078493-69078512 MS.gene99397:intron 35.0%
! TGCAATTTTTCCAAGGATAC+TGG - chr5.1:69075956-69075975 MS.gene99397:intron 35.0%
! TTGCTTTGAATGTGTTGGTA+TGG - chr5.1:69077715-69077734 MS.gene99397:CDS 35.0%
! TTTTAAACGCTACATGGACA+AGG - chr5.1:69078295-69078314 MS.gene99397:intron 35.0%
!! ATTTTTGGACTCGGATGTAT+TGG - chr5.1:69077018-69077037 MS.gene99397:intron 35.0%
!! GATGTATTGGATTAGCAGTA+TGG - chr5.1:69077031-69077050 MS.gene99397:intron 35.0%
!! GATTTGTTTTCCAATTCTCC+AGG + chr5.1:69077650-69077669 None:intergenic 35.0%
!! TTTTGTAGTTTGTGCCTGTT+TGG - chr5.1:69077077-69077096 MS.gene99397:intron 35.0%
!!! ACAGTAGCTATTTTTGGACT+CGG - chr5.1:69077009-69077028 MS.gene99397:intron 35.0%
!!! AGTACTGATGTCCTTTTTCA+AGG - chr5.1:69078212-69078231 MS.gene99397:intron 35.0%
!!! GTACTGATGTCCTTTTTCAA+GGG - chr5.1:69078213-69078232 MS.gene99397:intron 35.0%
AAACAGCAAATGTTGAACCG+GGG - chr5.1:69076983-69077002 MS.gene99397:CDS 40.0%
AGCAACTAGGATTATAGGTG+TGG - chr5.1:69077430-69077449 MS.gene99397:intron 40.0%
AGTGTATGACCACACAAACA+GGG + chr5.1:69076144-69076163 None:intergenic 40.0%
ATACGAATCCTAGCTTCATG+TGG + chr5.1:69075739-69075758 None:intergenic 40.0%
ATCATAGAGATGACTGATGG+AGG - chr5.1:69077683-69077702 MS.gene99397:intron 40.0%
ATCCTTGGAAAAATTGCAGG+AGG + chr5.1:69075954-69075973 None:intergenic 40.0%
CACAATCAGCCATGAAGATT+GGG + chr5.1:69076609-69076628 None:intergenic 40.0%
CAGCAACCCATAAGATGTAA+AGG - chr5.1:69075433-69075452 MS.gene99397:CDS 40.0%
CTAATCTCTACCAACTGTCA+TGG - chr5.1:69077882-69077901 MS.gene99397:intron 40.0%
CTCACATTGCCAAAGTTCTT+AGG - chr5.1:69076265-69076284 MS.gene99397:CDS 40.0%
CTTATGGGGTCTATATTTGG+AGG - chr5.1:69078242-69078261 MS.gene99397:intron 40.0%
GATATCACTGTGACAAAGAG+AGG + chr5.1:69075770-69075789 None:intergenic 40.0%
GGAAAACAAATCTGTGAGTC+AGG - chr5.1:69077658-69077677 MS.gene99397:intron 40.0%
GTCACAGACTTTGTAAATCC+TGG - chr5.1:69077629-69077648 MS.gene99397:intron 40.0%
TAAATAATCAGTGGCTCACC+TGG + chr5.1:69075691-69075710 None:intergenic 40.0%
TCAAATAAGTCCGTCCAAAC+AGG + chr5.1:69077094-69077113 None:intergenic 40.0%
TCACAATCAGCCATGAAGAT+TGG + chr5.1:69076610-69076629 None:intergenic 40.0%
TGGAAGGATAGACTCCATAA+GGG + chr5.1:69077922-69077941 None:intergenic 40.0%
TGTGGAGCAACTAGGATTAT+AGG - chr5.1:69077425-69077444 MS.gene99397:intron 40.0%
TTGATACACCACAACTGAGT+AGG + chr5.1:69076852-69076871 None:intergenic 40.0%
TTGGAAGGATAGACTCCATA+AGG + chr5.1:69077923-69077942 None:intergenic 40.0%
! AATGTCTTCGGTGTGTGATT+TGG - chr5.1:69078561-69078580 MS.gene99397:CDS 40.0%
! AGGTGAGCCACTGATTATTT+AGG - chr5.1:69075690-69075709 MS.gene99397:CDS 40.0%
! ATGTGTTGGTATGGCATCAT+TGG - chr5.1:69077724-69077743 MS.gene99397:intron 40.0%
! CTTTACATCTTATGGGTTGC+TGG + chr5.1:69075435-69075454 None:intergenic 40.0%
! TTTTATGTGATCCAGGGTTG+TGG - chr5.1:69076534-69076553 MS.gene99397:CDS 40.0%
!!! GGTGTTTTGATTTCAGGGTT+GGG - chr5.1:69078136-69078155 MS.gene99397:intron 40.0%
!!! GTGTTTTGATTTCAGGGTTG+GGG - chr5.1:69078137-69078156 MS.gene99397:intron 40.0%
!!! TGGTGTTTTGATTTCAGGGT+TGG - chr5.1:69078135-69078154 MS.gene99397:intron 40.0%
AAAATAGCTACTGTCGACCC+CGG + chr5.1:69077003-69077022 None:intergenic 45.0%
AAGAACGGGTACATCAGACT+TGG + chr5.1:69078276-69078295 None:intergenic 45.0%
AAGGATAGACTCCATAAGGG+TGG + chr5.1:69077919-69077938 None:intergenic 45.0%
AGAACGGGTACATCAGACTT+GGG + chr5.1:69078275-69078294 None:intergenic 45.0%
ATACTGGGTCATGAGGCAAT+TGG - chr5.1:69075972-69075991 MS.gene99397:intron 45.0%
ATCCTAGCTTCATGTGGCAT+TGG + chr5.1:69075733-69075752 None:intergenic 45.0%
CAAAGTTGCATTAGTCCGAG+TGG + chr5.1:69078010-69078029 None:intergenic 45.0%
CAACTAGACACCATGACAGT+TGG + chr5.1:69077895-69077914 None:intergenic 45.0%
CAACTGTCATGGTGTCTAGT+TGG - chr5.1:69077893-69077912 MS.gene99397:intron 45.0%
CACTCGGACTAATGCAACTT+TGG - chr5.1:69078008-69078027 MS.gene99397:intron 45.0%
CGTTGCAGACCTAAGAACTT+TGG + chr5.1:69076277-69076296 None:intergenic 45.0%
CTAGACTTTGTGGAGCAACT+AGG - chr5.1:69077417-69077436 MS.gene99397:CDS 45.0%
CTCAGTTGTGGTGTATCAAC+AGG - chr5.1:69076853-69076872 MS.gene99397:intron 45.0%
GAGTGTATGACCACACAAAC+AGG + chr5.1:69076145-69076164 None:intergenic 45.0%
GATCTCTCAAGCAAGGTTTC+GGG + chr5.1:69077976-69077995 None:intergenic 45.0%
GGATCTCTCAAGCAAGGTTT+CGG + chr5.1:69077977-69077996 None:intergenic 45.0%
TACTGGGTCATGAGGCAATT+GGG - chr5.1:69075973-69075992 MS.gene99397:intron 45.0%
TTGTTAACTACGTGCATGCG+TGG + chr5.1:69076167-69076186 None:intergenic 45.0%
! AGCCTCCTGCAATTTTTCCA+AGG - chr5.1:69075949-69075968 MS.gene99397:intron 45.0%
! GTAGTTTGTGCCTGTTTGGA+CGG - chr5.1:69077081-69077100 MS.gene99397:intron 45.0%
! TCTTCGGTGTGTGATTTGGA+TGG - chr5.1:69078565-69078584 MS.gene99397:CDS 45.0%
!! GGGTCGACAGTAGCTATTTT+TGG - chr5.1:69077003-69077022 MS.gene99397:CDS 45.0%
ATCCAGCAATTCCTCCCAAC+AGG - chr5.1:69076821-69076840 MS.gene99397:intron 50.0%
ATGGTTTCCTAGGTGGCTGA+AGG - chr5.1:69077392-69077411 MS.gene99397:CDS 50.0%
ATGTTAGGAGTGGACAAGCC+AGG - chr5.1:69078170-69078189 MS.gene99397:intron 50.0%
CACCAATGCCACATGAAGCT+AGG - chr5.1:69075728-69075747 MS.gene99397:CDS 50.0%
CCTGCTGTAGCAACAAGTGA+AGG - chr5.1:69075409-69075428 MS.gene99397:CDS 50.0%
GCTGAAGGAGCTAGACTTTG+TGG - chr5.1:69077407-69077426 MS.gene99397:CDS 50.0%
TCCAACACTTTCCACAACCC+TGG + chr5.1:69076548-69076567 None:intergenic 50.0%
TCCAAGGATACTGGGTCATG+AGG - chr5.1:69075965-69075984 MS.gene99397:intron 50.0%
TCCAGCAATTCCTCCCAACA+GGG - chr5.1:69076822-69076841 MS.gene99397:intron 50.0%
TGCATTAGTCCGAGTGGAAC+TGG + chr5.1:69078004-69078023 None:intergenic 50.0%
TGTCTAGTTGGCCACCCTTA+TGG - chr5.1:69077905-69077924 MS.gene99397:intron 50.0%
! CCTTCACTTGTTGCTACAGC+AGG + chr5.1:69075412-69075431 None:intergenic 50.0%
! CTAGCTTCATGTGGCATTGG+TGG + chr5.1:69075730-69075749 None:intergenic 50.0%
! GGTTTCGGGTCCAAACATTG+TGG + chr5.1:69077962-69077981 None:intergenic 50.0%
! TCCAGGGTTGTGGAAAGTGT+TGG - chr5.1:69076544-69076563 MS.gene99397:CDS 50.0%
!! GGTTGTGGAAAGTGTTGGAG+AGG - chr5.1:69076549-69076568 MS.gene99397:CDS 50.0%
!! TTTTAGGGGTAGGTGCTGCA+TGG - chr5.1:69076959-69076978 MS.gene99397:CDS 50.0%
ACTGAGTAGGCATGCCCTGT+TGG + chr5.1:69076839-69076858 None:intergenic 55.0%
AGGGCATGCCTACTCAGTTG+TGG - chr5.1:69076841-69076860 MS.gene99397:intron 55.0%
AGTCCGAGTGGAACTGGACT+CGG + chr5.1:69077998-69078017 None:intergenic 55.0%
CTGAGTAGGCATGCCCTGTT+GGG + chr5.1:69076838-69076857 None:intergenic 55.0%
GATCCGAGTCCAGTTCCACT+CGG - chr5.1:69077992-69078011 MS.gene99397:intron 55.0%
GCCTCATGACCCAGTATCCT+TGG + chr5.1:69075969-69075988 None:intergenic 55.0%
GGACTCGGATCTCTCAAGCA+AGG + chr5.1:69077983-69078002 None:intergenic 55.0%
! TCTAGCTCCTTCAGCCACCT+AGG + chr5.1:69077402-69077421 None:intergenic 55.0%
AGTAGGCATGCCCTGTTGGG+AGG + chr5.1:69076835-69076854 None:intergenic 60.0%
GCCCTGTTGGGAGGAATTGC+TGG + chr5.1:69076826-69076845 None:intergenic 60.0%
GCTGCGGTTTGTCGCAAACC+AGG - chr5.1:69075670-69075689 MS.gene99397:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 69075397 69078595 69075397 ID=MS.gene99397
chr5.1 mRNA 69075397 69078595 69075397 ID=MS.gene99397.t1;Parent=MS.gene99397
chr5.1 exon 69078538 69078595 69078538 ID=MS.gene99397.t1.exon1;Parent=MS.gene99397.t1
chr5.1 CDS 69078538 69078595 69078538 ID=cds.MS.gene99397.t1;Parent=MS.gene99397.t1
chr5.1 exon 69077706 69077739 69077706 ID=MS.gene99397.t1.exon2;Parent=MS.gene99397.t1
chr5.1 CDS 69077706 69077739 69077706 ID=cds.MS.gene99397.t1;Parent=MS.gene99397.t1
chr5.1 exon 69077118 69077443 69077118 ID=MS.gene99397.t1.exon3;Parent=MS.gene99397.t1
chr5.1 CDS 69077118 69077443 69077118 ID=cds.MS.gene99397.t1;Parent=MS.gene99397.t1
chr5.1 exon 69076945 69077027 69076945 ID=MS.gene99397.t1.exon4;Parent=MS.gene99397.t1
chr5.1 CDS 69076945 69077027 69076945 ID=cds.MS.gene99397.t1;Parent=MS.gene99397.t1
chr5.1 exon 69076513 69076588 69076513 ID=MS.gene99397.t1.exon5;Parent=MS.gene99397.t1
chr5.1 CDS 69076513 69076588 69076513 ID=cds.MS.gene99397.t1;Parent=MS.gene99397.t1
chr5.1 exon 69076217 69076377 69076217 ID=MS.gene99397.t1.exon6;Parent=MS.gene99397.t1
chr5.1 CDS 69076217 69076377 69076217 ID=cds.MS.gene99397.t1;Parent=MS.gene99397.t1
chr5.1 exon 69075676 69075840 69075676 ID=MS.gene99397.t1.exon7;Parent=MS.gene99397.t1
chr5.1 CDS 69075676 69075840 69075676 ID=cds.MS.gene99397.t1;Parent=MS.gene99397.t1
chr5.1 exon 69075397 69075513 69075397 ID=MS.gene99397.t1.exon8;Parent=MS.gene99397.t1
chr5.1 CDS 69075397 69075513 69075397 ID=cds.MS.gene99397.t1;Parent=MS.gene99397.t1
Gene Sequence

>MS.gene99397

ATGGAAGATAAACCTGCTGTAGCAACAAGTGAAGGCCAGCAACCCATAAGATGTAAAGGTGTGTTTACATGTCTCCCATGACTCATTAAAACATAACTTCAGTCTTTGCTGTTCATTTTTTTTATGTAATAGTTTTTTTTTTTGTGAAGGATTTATATAATAAATTTCTGTACCATTCAATTTAATTTGATAATATCGTAAGTTAATTTCATTTGTATGAAACTATGAAATAAAAAAACTATGAATGTAATAATACTATTTGCAAATTTTGTAGCTGCGGTTTGTCGCAAACCAGGTGAGCCACTGATTATTTAGGAGATCTTTGTGGCACCACCAATGCCACATGAAGCTAGGATTCGTATTATATGCACCTCTCTTTGTCACAGTGATATCATTTTTTGGAAAATGCAGGTTTTTATTTTTTTATGTTTTTTATTTGATTCTTTTTATTTAATATTTGTTTATTTGTCTTATTAACAATTCTGAATTAATTTTTAAATATGATTTTTGTGTTTTTGTGTTTTTTTTTTTTTTTTTTTTTACTTTTGAAGGAGCCTCCTGCAATTTTTCCAAGGATACTGGGTCATGAGGCAATTGGGTGAGTGAGTCCATGCATTTTATTAATTTGTATATTGTGTTCATTTATTGAAAATATTTCTCATTCCCTAATTAGGTTGTGTTCATTTATTGAAAATATTTCTCATTCCCTAATTAGGTAAAGGAAGGAAGTACATATTTATTCTACCCTGTTTGTGTGGTCATACACTCCACGCATGCACGTAGTTAACAATTTGAAGTCTTCAAATCAAGATTAAAAAAACTCTAATTTTTTAACTTTTTTTTGGTCAATTTGAAGTTGCATTTGTGTCTCACATTGCCAAAGTTCTTAGGTCTGCAACGATTATATGTGTTTACCACTTTCATTATTTGAGCTAACTTTTAAGAGTGAGATCCAATTCTGTTTAACGCGATATTAGTGTAATGTTTATAATGTACTTGGACACCTTCATCGTTACCAATTTTTAAGAGTGAGCGAAGTCCGTTTAACAATCCGAACTAAATATGTTGGTCTCATTTTTTCATACATTTAATTATTTAAATACTATAGAAGTTGATGATGTTCAAGTTTTAATTAATTTTTATGTGATCCAGGGTTGTGGAAAGTGTTGGAGAGGAAGTAACAGAAGTTACAAAGGGAGACATAGTTATCCCAATCTTCATGGCTGATTGTGAAGAGTGCATAGATTGCAAATCAACAAAGAGCAACCTTTGTTCAAAGTTTCCTTTTGATATTAAACCTTGGATGCTTAGATATGATACCACTAGATTCACTGATCTAAATGGAGAGATTATAAACCATTTCATATTTGTCTCTAGTTTTAGTGAGTATACTGTGGTTGACATTGCCAATCTACTCAAGATTGATCCAGCAATTCCTCCCAACAGGGCATGCCTACTCAGTTGTGGTGTATCAACAGGTATGCAAATTCAAGGTTGTTATTTTATTTTAGTTCACAACTAAACAAAATTGATCTAATTCAATATTTTGATCAAACATTAATTTTTAGGGGTAGGTGCTGCATGGAAAACAGCAAATGTTGAACCGGGGTCGACAGTAGCTATTTTTGGACTCGGATGTATTGGATTAGCAGTATGGATTCTCCTTAGTTTATGTTTTTCTTTTGTAGTTTGTGCCTGTTTGGACGGACTTATTTGAGCTTATCTACTAGATGAACACTTATGATACTATTTCAGAGAGCTTATGACAAGTCTATAAGCTGTTTTCAACTTATCTCTATAAGCTCTTCATAATAGCCTATGAGAACAACTTATAACTTATATGAACATAGTCCAATTATATTGTATCTTTTGTTATAAAAATAGTTTATCATAAACACTTAAAAGATAAGCGTTTATGCTATAAACGCTTAATTAAGTTGTTTATCCAAGCAAAACCTTTGTAGTTTTGTATGCTAAAATGCTTATTGTAATTGAATGGTTTCCTAGGTGGCTGAAGGAGCTAGACTTTGTGGAGCAACTAGGATTATAGGTGTGGATATCAAGCCAGAAAAATTTGAAATTGGTAATGCAATATTTGTTTATCATTATCATTATCACATTAAGTATAAAGTCAAATAATAATGTTTTAATAATTTAATTTAGAATTTATTATCATGTCTAAATAATGTATTTGATTTTGTTCATCCCATTTATTCAGCAAAGAAGTTTGGAGTCACAGACTTTGTAAATCCTGGAGAATTGGAAAACAAATCTGTGAGTCAGGTTATCATAGAGATGACTGATGGAGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCATGAAGCATATGCTTCATGTAGAAAGGTATATTTCTATCTCAAAGTGTGCATTGTTTTCATTTGTACTAACTAATTTTTGCTTTGTTTTAACAATGTTATTGGTGCAAAGTATCTACCGACTTTGCCGATTACTAATCTCTACCAACTGTCATGGTGTCTAGTTGGCCACCCTTATGGAGTCTATCCTTCCAACCACATTTTTTTTCATCCACAATGTTTGGACCCGAAACCTTGCTTGAGAGATCCGAGTCCAGTTCCACTCGGACTAATGCAACTTTGGTTTTGAACTAATTAATTTGAAATTCCATATTCTTCAGTTGTGTGCAATATTCAATATTATTTGATTAACTGCTGCATACTTGTTGAAAGAATGGATTGGAAAATTGGTGTTTTGATTTCAGGGTTGGGGAAAAACAATTATGTTAGGAGTGGACAAGCCAGGATCTAAGTTGAGTATCAATAGTACTGATGTCCTTTTTCAAGGGAAAACTCTTATGGGGTCTATATTTGGAGGACTCAAACCCAAGTCTGATGTACCCGTTCTTTTTAAACGCTACATGGACAAGGTACCATGTAATTTCTTTTTTTGATTTTTTAAGTTTATGATCTCTTCCTCTCTTTTGGTAACATTTTATAAAACAAAGTAGTAGTTTATTTAAGTAAACAATAGTAATGTAAACAAATTTTTGGACTTTTTATTGGTTAATTTTTTCTCCAATTATTATCAGGAACTCAATTTGGATGATTTTGTTACACATGAGGTGGAATTGAAAGACATCAACAAAGCTTTTGATTTATTGACTAAAGGAGAATGTCTTCGGTGTGTGATTTGGATGGACAAATGA

Protein sequence

>MS.gene99397.t1

MEDKPAVATSEGQQPIRCKVAFVSHIAKVLRVVESVGEEVTEVTKGDIVIPIFMADCEECIDCKSTKSNLCSKFPFDIKPWMLRYDTTRFTDLNGEIINHFIFVSSFSEYTVVDIANLLKIDPAIPPNRACLLSCGVSTGVGAAWKTANVEPGSTVAIFGLGCIGLAVAEGARLCGATRIIGVDIKPEKFEIAKKFGVTDFVNPGELENKSVSQVIIEMTDGGADYCFECVGMASLVHEAYASCRKGWGKTIMLGVDKPGSKLSINSTDVLFQGKTLMGSIFGGLKPKSDVPVLFKRYMDKELNLDDFVTHEVELKDINKAFDLLTKGECLRCVIWMDK