AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99407

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99407.t1 MTR_5g087550 98.230 565 10 0 1 565 1 565 0.0 1149
MS.gene99407.t1 MTR_5g024880 70.934 578 144 3 1 565 1 567 0.0 838
MS.gene99407.t1 MTR_5g026450 76.000 525 117 2 43 565 25 542 0.0 827
MS.gene99407.t1 MTR_5g026460 76.000 525 117 2 43 565 25 542 0.0 827
MS.gene99407.t1 MTR_5g026480 76.000 525 117 2 43 565 25 542 0.0 827
MS.gene99407.t1 MTR_5g091050 75.908 523 118 2 43 565 31 545 0.0 825
MS.gene99407.t1 MTR_5g026430 75.810 525 118 2 43 565 25 542 0.0 825
MS.gene99407.t1 MTR_5g026500 75.475 526 121 2 43 565 30 550 0.0 823
MS.gene99407.t1 MTR_8g072640 70.256 585 152 4 1 565 1 583 0.0 819
MS.gene99407.t1 MTR_5g024880 68.938 499 131 5 1 486 1 488 0.0 701
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99407.t1 AT1G76490 74.914 582 125 4 1 561 51 632 0.0 888
MS.gene99407.t1 AT2G17370 67.376 564 167 6 2 560 3 554 0.0 772

Find 175 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCGTTTATCTACCTTCT+AGG 0.162002 5.1:+69004818 MS.gene99407:CDS
CTGATGTCTGCCATTGCTTC+AGG 0.210943 5.1:+69008183 MS.gene99407:CDS
AGAAACCTGCCGCAGTTAAT+TGG 0.233252 5.1:+69007610 MS.gene99407:CDS
TTCCCTGACATGGATGTTAT+TGG 0.284863 5.1:+69006829 MS.gene99407:CDS
CTTGCTGGTTCTGCTGTTGC+TGG 0.297128 5.1:+69007747 MS.gene99407:CDS
CTCTTGGCAACCATTGTTGC+TGG 0.337492 5.1:+69008135 MS.gene99407:CDS
GGGAGAGCATCAGAGGCTTT+TGG 0.339690 5.1:-69004644 None:intergenic
TTGGAAGGTTTACCATTAGA+AGG 0.342151 5.1:+69005127 MS.gene99407:CDS
ATGGATGTTATTGGCATATC+AGG 0.348723 5.1:+69006838 MS.gene99407:CDS
CGGTGGTGGTTTGCGGCGGC+CGG 0.353787 5.1:-69004562 None:intergenic
TCTGCTGTTGCTGGCACTCT+TGG 0.363031 5.1:+69007756 MS.gene99407:CDS
GTTGGATGGATTTGAATATA+CGG 0.364431 5.1:+69005237 MS.gene99407:CDS
AATGGCAGAAACAATGTTAC+TGG 0.364718 5.1:-69007796 None:intergenic
ATCTACCTTCTAGGTTTCTT+CGG 0.369751 5.1:+69004827 MS.gene99407:CDS
ACGAACATCAGGAAGATCTT+TGG 0.383156 5.1:+69005108 MS.gene99407:CDS
AAGGTCTCTCCCATCATTTA+CGG 0.387616 5.1:-69007886 None:intergenic
GGAAACAATGGCGGCGAGTT+CGG 0.393903 5.1:-69004789 None:intergenic
TGTAAAGCTATATATGCTTC+TGG 0.397261 5.1:+69005310 MS.gene99407:CDS
TGGTTTGCGGCGGCCGGCGA+TGG 0.401498 5.1:-69004556 None:intergenic
TCGTAATCAAATCCTTCTAA+TGG 0.402585 5.1:-69005139 None:intergenic
CCTCTCAGGTGGGTACAGTA+GGG 0.407125 5.1:+69008022 MS.gene99407:intron
CGGCCGCCGCAAACCACCAC+CGG 0.407539 5.1:+69004563 MS.gene99407:CDS
GGCGACTACAGAAGGGTGTT+TGG 0.411168 5.1:+69005267 MS.gene99407:CDS
TCCGTTGAATTCTGATACAT+TGG 0.412182 5.1:+69005435 MS.gene99407:CDS
TCTGAACATAATGAAGGTTC+AGG 0.418209 5.1:-69004971 None:intergenic
TTCCATCATTGTTATGCAAT+GGG 0.418759 5.1:-69007862 None:intergenic
TGATGTCTGCCATTGCTTCA+GGG 0.419185 5.1:+69008184 MS.gene99407:CDS
GGTAGGGTATATTCAAATTC+CGG 0.423676 5.1:+69005192 MS.gene99407:CDS
GGTATTCAGTGTGCTATGGC+TGG 0.436039 5.1:+69006703 MS.gene99407:CDS
ACCTCTCAGGTGGGTACAGT+AGG 0.436705 5.1:+69008021 MS.gene99407:intron
ATGGTGTTGGTGAGGTAGAG+AGG 0.442236 5.1:-69004671 None:intergenic
ACGGCGCCGGTGGTGGTTTG+CGG 0.442491 5.1:-69004569 None:intergenic
TTCTTTAGGAAATTATTGTT+CGG 0.442685 5.1:+69007584 MS.gene99407:intron
ATGCCAATAACATCCATGTC+AGG 0.447589 5.1:-69006832 None:intergenic
GGTCGCGACGGCGCCGGTGG+TGG 0.447682 5.1:-69004576 None:intergenic
CTTGAACATGCTTGGTGTGA+AGG 0.450968 5.1:+69008077 MS.gene99407:CDS
CAAATTCCGGTGGGTGTGGC+GGG 0.452042 5.1:+69005205 MS.gene99407:CDS
CAAAGAAGATGTGGTGAAGA+AGG 0.453751 5.1:+69007674 MS.gene99407:CDS
GGCCGGCGATGGAGGTCCAT+TGG 0.456069 5.1:-69004545 None:intergenic
GCAGTAGAAAATCTAACAAC+AGG 0.456803 5.1:-69005376 None:intergenic
TGTGGCGGGACCATTGTTGT+TGG 0.464340 5.1:+69005219 MS.gene99407:CDS
AAGAACGTTCTGCACCCCTT+TGG 0.466291 5.1:-69006788 None:intergenic
TCAATCCAATTAACTGCGGC+AGG 0.468892 5.1:-69007615 None:intergenic
GCTGTTGCTGGCACTCTTGG+CGG 0.470685 5.1:+69007759 MS.gene99407:CDS
TTGGTGAGGTAGAGAGGGAG+AGG 0.473154 5.1:-69004665 None:intergenic
ACGCGCTTCTCATGATGGTT+GGG 0.476220 5.1:+69004877 MS.gene99407:CDS
AAGAGTCTCGAGTTTGATCC+TGG 0.476503 5.1:-69008117 None:intergenic
CACCCTTCTGTAGTCGCCAT+TGG 0.478661 5.1:-69005262 None:intergenic
TTCCCATTGCATAACAATGA+TGG 0.478827 5.1:+69007860 MS.gene99407:CDS
CTTCCATCATTGTTATGCAA+TGG 0.481383 5.1:-69007863 None:intergenic
GCCGCAGTTAATTGGATTGA+GGG 0.485552 5.1:+69007618 MS.gene99407:CDS
ATGATGGAAGCCGTAAATGA+TGG 0.485702 5.1:+69007876 MS.gene99407:CDS
TCTGCTTGCTTGAACATGCT+TGG 0.486251 5.1:+69008069 MS.gene99407:CDS
GGAGACCATGTTCATTCCCA+TGG 0.487629 5.1:-69006767 None:intergenic
TATGAGATTTACATGTAGTA+CGG 0.488443 5.1:+69006738 MS.gene99407:CDS
CTCTCAGGTGGGTACAGTAG+GGG 0.490807 5.1:+69008023 MS.gene99407:intron
CTCCACTAGGGAAGCCACCT+TGG 0.492216 5.1:-69007706 None:intergenic
GCAACACGCGCTTCTCATGA+TGG 0.493338 5.1:+69004872 MS.gene99407:CDS
AGGGTTGGTCGCGACGGCGC+CGG 0.495727 5.1:-69004582 None:intergenic
CGTATTATCTCCTCCACAGA+TGG 0.496364 5.1:+69004720 MS.gene99407:CDS
TGGTGTTGGTGAGGTAGAGA+GGG 0.497806 5.1:-69004670 None:intergenic
TCTTCCTCTGAACATAATGA+AGG 0.498046 5.1:-69004977 None:intergenic
ATGTAGTACGGGTGATGCCA+TGG 0.499191 5.1:+69006750 MS.gene99407:CDS
CACGCGCTTCTCATGATGGT+TGG 0.499824 5.1:+69004876 MS.gene99407:CDS
AGTAGATTTGCCAGGTTGCT+AGG 0.499869 5.1:+69006682 MS.gene99407:CDS
GAGCCGCGATTCGAGTGAAT+AGG 0.500776 5.1:-69005041 None:intergenic
ATTGTAAACTCCGTTGTTGA+AGG 0.505781 5.1:+69005007 MS.gene99407:CDS
GAAGAAGAGCGTGAAGAAGA+TGG 0.505810 5.1:-69004690 None:intergenic
TCAGGTCGAGTAGATTTGCC+AGG 0.506358 5.1:+69006674 MS.gene99407:intron
TGCCGCAGTTAATTGGATTG+AGG 0.507886 5.1:+69007617 MS.gene99407:CDS
GCGGGACCATTGTTGTTGGA+TGG 0.508898 5.1:+69005223 MS.gene99407:CDS
TATTCAAATTCCGGTGGGTG+TGG 0.510401 5.1:+69005201 MS.gene99407:CDS
TGCAAAATCACCTCAATGGA+TGG 0.510987 5.1:-69007927 None:intergenic
AGAAACAATGTTACTGGCAT+GGG 0.514530 5.1:-69007790 None:intergenic
CAATACCGAAGAAACCTAGA+AGG 0.514959 5.1:-69004832 None:intergenic
GAAGCTTTACAACGAACATC+AGG 0.515590 5.1:+69005097 MS.gene99407:CDS
AGGATCAAACTCGAGACTCT+TGG 0.517457 5.1:+69008119 MS.gene99407:CDS
TAACGAAAATGTCATCTTGA+GGG 0.518189 5.1:+69008253 MS.gene99407:CDS
GTTCAGGTGAGGTGAGTTTG+CGG 0.519525 5.1:-69004955 None:intergenic
TCAAATTCCGGTGGGTGTGG+CGG 0.520146 5.1:+69005204 MS.gene99407:CDS
GATTTGAGACGGTGGGAATG+AGG 0.521781 5.1:-69004602 None:intergenic
AGGCTGATTGACGGTGGTGT+TGG 0.524670 5.1:-69004930 None:intergenic
ATGAGATTTACATGTAGTAC+GGG 0.530951 5.1:+69006739 MS.gene99407:CDS
CACGACGAATTGCGGCGGCT+CGG 0.531017 5.1:-69005075 None:intergenic
TCGAAATGATTTCCCTGACA+TGG 0.532844 5.1:+69006819 MS.gene99407:CDS
TCTCAGGTGGGTACAGTAGG+GGG 0.534627 5.1:+69008024 MS.gene99407:intron
GCTAGGTATTCAGTGTGCTA+TGG 0.535257 5.1:+69006699 MS.gene99407:CDS
GTTGGTCGCGACGGCGCCGG+TGG 0.538330 5.1:-69004579 None:intergenic
AACCAATGGACCTCCATCGC+CGG 0.539913 5.1:+69004543 None:intergenic
AGTGACAATGCCATCCATTG+AGG 0.542652 5.1:+69007917 MS.gene99407:CDS
CAGAAACAATGTTACTGGCA+TGG 0.544013 5.1:-69007791 None:intergenic
GAATGAACATGGTCTCCAAA+GGG 0.546757 5.1:+69006773 MS.gene99407:CDS
GGGATGCAAAATCACCTCAA+TGG 0.547483 5.1:-69007931 None:intergenic
TTGAACATGCTTGGTGTGAA+GGG 0.547739 5.1:+69008078 MS.gene99407:CDS
AATGGTCCCGCCACACCCAC+CGG 0.552343 5.1:-69005211 None:intergenic
GTTCCAATGGCGACTACAGA+AGG 0.553048 5.1:+69005259 MS.gene99407:CDS
TAAAGCTTCACGACGAATTG+CGG 0.556780 5.1:-69005083 None:intergenic
TTTGCGGCGGCCGGCGATGG+AGG 0.557103 5.1:-69004553 None:intergenic
AGGGCAGTGTTGTGAAATGC+CGG 0.557390 5.1:+69005171 MS.gene99407:CDS
ATTGACGGTGGTGTTGGTCG+TGG 0.558270 5.1:-69004924 None:intergenic
GTATTCAGTGTGCTATGGCT+GGG 0.560186 5.1:+69006704 MS.gene99407:CDS
GGATCTTGTCACGCCATCTG+TGG 0.561301 5.1:-69004733 None:intergenic
GCGCCGGTGGTGGTTTGCGG+CGG 0.561395 5.1:-69004566 None:intergenic
GGAATGAGGGTTGGTCGCGA+CGG 0.562280 5.1:-69004588 None:intergenic
CATGAAGAGGAGTGGAGCTA+CGG 0.562649 5.1:-69004754 None:intergenic
TTGGTTGCTAGTACAAATAG+AGG 0.563083 5.1:+69005286 MS.gene99407:CDS
GCATTGTCACTGAAATATGA+AGG 0.565156 5.1:-69007905 None:intergenic
AGGGAGAGGGAGAGCATCAG+AGG 0.566983 5.1:-69004651 None:intergenic
TGATGGAAGCCGTAAATGAT+GGG 0.568019 5.1:+69007877 MS.gene99407:CDS
GTTGGTCGTGGTGGTGATGA+CGG 0.568459 5.1:-69004912 None:intergenic
GTGAAATTGACGACATGAAG+AGG 0.568568 5.1:-69004767 None:intergenic
GGAATGAACATGGTCTCCAA+AGG 0.570126 5.1:+69006772 MS.gene99407:CDS
AGGTATGCTACCTTCAACAA+CGG 0.575442 5.1:-69005017 None:intergenic
AGCAATTATCAAAGAAGATG+TGG 0.576726 5.1:+69007665 MS.gene99407:CDS
GAGACGGTGGGAATGAGGGT+TGG 0.577164 5.1:-69004597 None:intergenic
GTAACGAAAATGTCATCTTG+AGG 0.581506 5.1:+69008252 MS.gene99407:CDS
CTTCCTATTCACTCGAATCG+CGG 0.581947 5.1:+69005038 MS.gene99407:CDS
GGTGCAAGCAAGGAGGAACC+AGG 0.582386 5.1:+69008099 MS.gene99407:CDS
TAAAACAGCTCCAGCAACAA+TGG 0.583428 5.1:-69008145 None:intergenic
GTAGATAAACGAAGCGATGA+GGG 0.584394 5.1:-69004810 None:intergenic
TGGTGAGGTAGAGAGGGAGA+GGG 0.584669 5.1:-69004664 None:intergenic
TATTCACTCGAATCGCGGCT+CGG 0.587031 5.1:+69005043 MS.gene99407:CDS
GAGCGTGAAGAAGATGGTGT+TGG 0.589470 5.1:-69004684 None:intergenic
TGTAGTACGGGTGATGCCAT+GGG 0.591353 5.1:+69006751 MS.gene99407:CDS
AGTGTTGTGAAATGCCGGTA+GGG 0.592083 5.1:+69005176 MS.gene99407:CDS
TGCCAATAACATCCATGTCA+GGG 0.592633 5.1:-69006831 None:intergenic
TTGAGCTGGATCTTGACCTG+TGG 0.594253 5.1:-69007826 None:intergenic
TTTGCGGAGAGGCTGATTGA+CGG 0.595092 5.1:-69004939 None:intergenic
CAGTGTTGTGAAATGCCGGT+AGG 0.595497 5.1:+69005175 MS.gene99407:CDS
GACTAGTTGCCCTGAAGCAA+TGG 0.597061 5.1:-69008193 None:intergenic
ATGATCTGTTGTATTTCATG+TGG 0.597760 5.1:-69008221 None:intergenic
TGGTGTGAAGGGTGCAAGCA+AGG 0.600451 5.1:+69008089 MS.gene99407:CDS
TGAACCTTCATTATGTTCAG+AGG 0.601220 5.1:+69004973 MS.gene99407:CDS
ATTTGAATATACGGTTCCAA+TGG 0.603145 5.1:+69005246 MS.gene99407:CDS
TTAATTGGATTGAGGGACGC+GGG 0.604701 5.1:+69007625 MS.gene99407:CDS
TCTTGTCACGCCATCTGTGG+AGG 0.605289 5.1:-69004730 None:intergenic
AGGGTATATTCAAATTCCGG+TGG 0.606973 5.1:+69005195 MS.gene99407:CDS
ATTTGAGACGGTGGGAATGA+GGG 0.610172 5.1:-69004601 None:intergenic
GAGCATGTTTAGCTCCACTA+GGG 0.610687 5.1:-69007718 None:intergenic
TGTCAGGGAAATCATTTCGA+AGG 0.610857 5.1:-69006816 None:intergenic
ACATCAGGAAGATCTTTGGA+AGG 0.611811 5.1:+69005112 MS.gene99407:CDS
CGAAGCGATGAGGGAAACAA+TGG 0.612271 5.1:-69004801 None:intergenic
GGAATTTGAATATACCCTAC+CGG 0.615358 5.1:-69005190 None:intergenic
GGTAGATAAACGAAGCGATG+AGG 0.616427 5.1:-69004811 None:intergenic
GGAACGTGATTTGAGACGGT+GGG 0.616597 5.1:-69004609 None:intergenic
GAGGGGAACGTGATTTGAGA+CGG 0.616715 5.1:-69004613 None:intergenic
GACGGTGGTGTTGGTCGTGG+TGG 0.618664 5.1:-69004921 None:intergenic
TGAGCATGTTTAGCTCCACT+AGG 0.619112 5.1:-69007719 None:intergenic
GTTAATTGGATTGAGGGACG+CGG 0.624111 5.1:+69007624 MS.gene99407:CDS
TGGTTGCTAGTACAAATAGA+GGG 0.629909 5.1:+69005287 MS.gene99407:CDS
GACCAAGGTGGCTTCCCTAG+TGG 0.630319 5.1:+69007704 MS.gene99407:CDS
CAGCAACAGCAGAACCAGCA+AGG 0.636800 5.1:-69007746 None:intergenic
TGAAGAAGATGGTGTTGGTG+AGG 0.637139 5.1:-69004679 None:intergenic
ATTGACGACATGAAGAGGAG+TGG 0.638509 5.1:-69004762 None:intergenic
GCCAATGTATCAGAATTCAA+CGG 0.639699 5.1:-69005436 None:intergenic
TCAAATCCATCCAACAACAA+TGG 0.643648 5.1:-69005229 None:intergenic
ACACTGAATACCTAGCAACC+TGG 0.648317 5.1:-69006692 None:intergenic
GGGAACGTGATTTGAGACGG+TGG 0.654216 5.1:-69004610 None:intergenic
TGATGCCATGGGAATGAACA+TGG 0.657785 5.1:+69006762 MS.gene99407:CDS
TTCCAATGGCGACTACAGAA+GGG 0.659674 5.1:+69005260 MS.gene99407:CDS
GGGTATATTCAAATTCCGGT+GGG 0.660198 5.1:+69005196 MS.gene99407:CDS
AGCGATGAGGGAAACAATGG+CGG 0.660738 5.1:-69004798 None:intergenic
CGCGATTCGAGTGAATAGGA+AGG 0.675620 5.1:-69005037 None:intergenic
AATGAACATGGTCTCCAAAG+GGG 0.677136 5.1:+69006774 MS.gene99407:CDS
GCGGAGAGGCTGATTGACGG+TGG 0.679539 5.1:-69004936 None:intergenic
AGCTTCACGACGAATTGCGG+CGG 0.679653 5.1:-69005080 None:intergenic
ACATAATGAAGGTTCAGGTG+AGG 0.680214 5.1:-69004966 None:intergenic
GGTGAGGTGAGTTTGCGGAG+AGG 0.683699 5.1:-69004950 None:intergenic
GTGGAGGAGATAATACGCGA+CGG 0.700195 5.1:-69004714 None:intergenic
AAAGCTATATATGCTTCTGG+TGG 0.701455 5.1:+69005313 MS.gene99407:CDS
TCCCTCAATCCAATTAACTG+CGG 0.724361 5.1:-69007619 None:intergenic
TGTGAAGGGTGCAAGCAAGG+AGG 0.729907 5.1:+69008092 MS.gene99407:CDS
GAAGAAGGTATTGAAGACCA+AGG 0.742555 5.1:+69007689 MS.gene99407:CDS
TGGTGATGACGGTGTCATCG+AGG 0.750800 5.1:-69004901 None:intergenic
GAAGGTATTGAAGACCAAGG+TGG 0.753924 5.1:+69007692 MS.gene99407:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAGAAATATAAATAAAT+TGG - chr5.1:69007292-69007311 None:intergenic 10.0%
!!! TTTTTCAATGTTTAAATTTA+GGG + chr5.1:69006346-69006365 MS.gene99407:intron 10.0%
!! TAAGATTAAAATAAACTGTA+GGG - chr5.1:69007954-69007973 None:intergenic 15.0%
!! TAGAAATATAAATAAATTGG+TGG - chr5.1:69007289-69007308 None:intergenic 15.0%
!! TTAAGATTAAAATAAACTGT+AGG - chr5.1:69007955-69007974 None:intergenic 15.0%
!!! GAAATTAATTTAGTTTTGTT+TGG + chr5.1:69005522-69005541 MS.gene99407:intron 15.0%
!!! GTTTTTCAATGTTTAAATTT+AGG + chr5.1:69006345-69006364 MS.gene99407:intron 15.0%
!!! TATCCATATTTTATTGTTAT+AGG + chr5.1:69007068-69007087 MS.gene99407:intron 15.0%
!!! TTTTGAATTTTGATTTTGAA+AGG + chr5.1:69005486-69005505 MS.gene99407:intron 15.0%
!! AAAATCCTATTGACAATAAT+AGG + chr5.1:69006214-69006233 MS.gene99407:intron 20.0%
!! AATTTAAGGAAAATGTTAAC+CGG - chr5.1:69006528-69006547 None:intergenic 20.0%
!! AATTTGAGTAAAGAAAATAG+AGG + chr5.1:69006565-69006584 MS.gene99407:intron 20.0%
!! ACAAGTGTAAATAATGTAAT+TGG - chr5.1:69006984-69007003 None:intergenic 20.0%
!! ACACCTATAACAATAAAATA+TGG - chr5.1:69007074-69007093 None:intergenic 20.0%
!! ATTCCATAAATTCAATACAT+TGG + chr5.1:69007117-69007136 MS.gene99407:intron 20.0%
!! CTTATTATTGGTATATGAAA+GGG + chr5.1:69005752-69005771 MS.gene99407:intron 20.0%
!! GAAATTGAATATGGTTTATT+GGG + chr5.1:69006595-69006614 MS.gene99407:intron 20.0%
!! TAATAGTGAAGTGAAATTAT+TGG + chr5.1:69005859-69005878 MS.gene99407:intron 20.0%
!! TCTTATTATTGGTATATGAA+AGG + chr5.1:69005751-69005770 MS.gene99407:intron 20.0%
!! TGAAATTATTGGTATTTGAA+AGG + chr5.1:69005870-69005889 MS.gene99407:intron 20.0%
!! TGAAATTGAATATGGTTTAT+TGG + chr5.1:69006594-69006613 MS.gene99407:intron 20.0%
!!! AATATTTTTAATGGGAACAT+TGG + chr5.1:69007527-69007546 MS.gene99407:intron 20.0%
!!! CATGCCAAAATATTTTTAAT+GGG + chr5.1:69007519-69007538 MS.gene99407:intron 20.0%
!!! TAATAATTTATGGTGAGTTT+TGG + chr5.1:69006633-69006652 MS.gene99407:intron 20.0%
!!! TGTTCCCATTAAAAATATTT+TGG - chr5.1:69007526-69007545 None:intergenic 20.0%
!!! TTCTTTAGGAAATTATTGTT+CGG + chr5.1:69007584-69007603 MS.gene99407:intron 20.0%
! AATAAATGCTAGAACACATT+AGG - chr5.1:69007325-69007344 None:intergenic 25.0%
! AATTATGAAAATCTTGCATG+TGG + chr5.1:69005819-69005838 MS.gene99407:intron 25.0%
! ACACCAATGTATTGAATTTA+TGG - chr5.1:69007123-69007142 None:intergenic 25.0%
! ACTATCTTAATCTCCTTATT+TGG + chr5.1:69007473-69007492 MS.gene99407:intron 25.0%
! AGGAATCAAATAACCAAATA+AGG - chr5.1:69007489-69007508 None:intergenic 25.0%
! ATGGTGTGAAAATTAAACTT+TGG + chr5.1:69007246-69007265 MS.gene99407:intron 25.0%
! ATTATGAAAATCTTGCATGT+GGG + chr5.1:69005820-69005839 MS.gene99407:intron 25.0%
! ATTCAAAAATGCAAGTTAAC+TGG - chr5.1:69007386-69007405 None:intergenic 25.0%
! CAATGCATTAAAAGCTTAAA+AGG + chr5.1:69006444-69006463 MS.gene99407:intron 25.0%
! CTTTAAATATCTTCACATTG+TGG - chr5.1:69006003-69006022 None:intergenic 25.0%
! GATAAAATCAATGATGACAA+TGG - chr5.1:69007052-69007071 None:intergenic 25.0%
! GTCAAGAAAACATAAAACTT+AGG - chr5.1:69008003-69008022 None:intergenic 25.0%
! TATGAGATTTACATGTAGTA+CGG + chr5.1:69006738-69006757 MS.gene99407:CDS 25.0%
! TCAAATGAGGTAATTCAAAT+TGG + chr5.1:69005727-69005746 MS.gene99407:intron 25.0%
! TTATTTGATTCCTGTAATCA+CGG + chr5.1:69007496-69007515 MS.gene99407:intron 25.0%
!! ACAAACAACCATTACATTTT+TGG - chr5.1:69007554-69007573 None:intergenic 25.0%
!! GGATTGTTTGAAATTGAATA+TGG + chr5.1:69006586-69006605 MS.gene99407:intron 25.0%
!! TATTGGTATTTGAAAGGTAT+TGG + chr5.1:69005876-69005895 MS.gene99407:intron 25.0%
!! TTCAAATTGGCTCTTATTAT+TGG + chr5.1:69005740-69005759 MS.gene99407:intron 25.0%
!! TTTTCCAATTTAATAGCTCT+AGG + chr5.1:69007977-69007996 MS.gene99407:intron 25.0%
!!! GCATGCCAAAATATTTTTAA+TGG + chr5.1:69007518-69007537 MS.gene99407:intron 25.0%
!!! GTTTTTTTTCTTCATGAAAG+TGG + chr5.1:69007002-69007021 MS.gene99407:intron 25.0%
!!! TTATCTGCTTTTTGAGAAAA+GGG + chr5.1:69007211-69007230 MS.gene99407:intron 25.0%
!!! TTTATCTGCTTTTTGAGAAA+AGG + chr5.1:69007210-69007229 MS.gene99407:intron 25.0%
ACATTGGACCAAAAATGTAA+TGG + chr5.1:69007543-69007562 MS.gene99407:intron 30.0%
AGCAATTATCAAAGAAGATG+TGG + chr5.1:69007665-69007684 MS.gene99407:CDS 30.0%
ATGAGATTTACATGTAGTAC+GGG + chr5.1:69006739-69006758 MS.gene99407:CDS 30.0%
ATGATCTGTTGTATTTCATG+TGG - chr5.1:69008224-69008243 None:intergenic 30.0%
ATTTGAATATACGGTTCCAA+TGG + chr5.1:69005246-69005265 MS.gene99407:CDS 30.0%
CTTCTAAACAGTGTTAATGT+CGG + chr5.1:69005695-69005714 MS.gene99407:intron 30.0%
TCACACCTATTATTGTCAAT+AGG - chr5.1:69006222-69006241 None:intergenic 30.0%
TCGTAATCAAATCCTTCTAA+TGG - chr5.1:69005142-69005161 None:intergenic 30.0%
TGGAAGACTAAATATCAAAC+AGG - chr5.1:69007366-69007385 None:intergenic 30.0%
TGTAAAGCTATATATGCTTC+TGG + chr5.1:69005310-69005329 MS.gene99407:CDS 30.0%
TTCCATCATTGTTATGCAAT+GGG - chr5.1:69007865-69007884 None:intergenic 30.0%
! AGGTGTTATATGATTTGAAC+TGG + chr5.1:69007088-69007107 MS.gene99407:intron 30.0%
! GTTGGATGGATTTGAATATA+CGG + chr5.1:69005237-69005256 MS.gene99407:CDS 30.0%
! TTCTCAGTTGAAGTTTTTCT+TGG + chr5.1:69005408-69005427 MS.gene99407:CDS 30.0%
! TTGATTACGAAGCGATTTTA+GGG + chr5.1:69005152-69005171 MS.gene99407:CDS 30.0%
! TTTGATTACGAAGCGATTTT+AGG + chr5.1:69005151-69005170 MS.gene99407:CDS 30.0%
!! TTGTACTGACTTGATTCTTT+AGG + chr5.1:69007570-69007589 MS.gene99407:intron 30.0%
!!! AAGCGTTGTTTTTAACTTGT+TGG + chr5.1:69006038-69006057 MS.gene99407:intron 30.0%
!!! GTTTTTAACTTGTTGGACTT+GGG + chr5.1:69006045-69006064 MS.gene99407:intron 30.0%
!!! TGTTTTTAACTTGTTGGACT+TGG + chr5.1:69006044-69006063 MS.gene99407:intron 30.0%
AAAAGGGTTATGCAAAAGCA+TGG + chr5.1:69007227-69007246 MS.gene99407:intron 35.0%
AAAGCTATATATGCTTCTGG+TGG + chr5.1:69005313-69005332 MS.gene99407:CDS 35.0%
AATGGCAGAAACAATGTTAC+TGG - chr5.1:69007799-69007818 None:intergenic 35.0%
AGAAACAATGTTACTGGCAT+GGG - chr5.1:69007793-69007812 None:intergenic 35.0%
ATCTACCTTCTAGGTTTCTT+CGG + chr5.1:69004827-69004846 MS.gene99407:CDS 35.0%
ATGGATGTTATTGGCATATC+AGG + chr5.1:69006838-69006857 MS.gene99407:CDS 35.0%
ATTCTTCACAATACATCGCT+AGG - chr5.1:69005954-69005973 None:intergenic 35.0%
ATTGTAAACTCCGTTGTTGA+AGG + chr5.1:69005007-69005026 MS.gene99407:CDS 35.0%
CAGTAAAAACTTTGATGTCG+TGG + chr5.1:69006163-69006182 MS.gene99407:intron 35.0%
CGATGTATTGTGAAGAATTG+TGG + chr5.1:69005956-69005975 MS.gene99407:intron 35.0%
CTTCCATCATTGTTATGCAA+TGG - chr5.1:69007866-69007885 None:intergenic 35.0%
CTTGGGATTTGAATTCCATA+AGG + chr5.1:69006062-69006081 MS.gene99407:intron 35.0%
GACAATAATAGGTGTGAATG+TGG + chr5.1:69006225-69006244 MS.gene99407:intron 35.0%
GCAGTAGAAAATCTAACAAC+AGG - chr5.1:69005379-69005398 None:intergenic 35.0%
GCATTGTCACTGAAATATGA+AGG - chr5.1:69007908-69007927 None:intergenic 35.0%
GCCAATGTATCAGAATTCAA+CGG - chr5.1:69005439-69005458 None:intergenic 35.0%
GCTTAACTAGAGAAGAAACA+AGG - chr5.1:69006893-69006912 None:intergenic 35.0%
GGAATTTGAATATACCCTAC+CGG - chr5.1:69005193-69005212 None:intergenic 35.0%
GGTAGGGTATATTCAAATTC+CGG + chr5.1:69005192-69005211 MS.gene99407:CDS 35.0%
TAGGCCTAGAGCTATTAAAT+TGG - chr5.1:69007984-69008003 None:intergenic 35.0%
TCAAATCCATCCAACAACAA+TGG - chr5.1:69005232-69005251 None:intergenic 35.0%
TCCGTTGAATTCTGATACAT+TGG + chr5.1:69005435-69005454 MS.gene99407:CDS 35.0%
TCTGAACATAATGAAGGTTC+AGG - chr5.1:69004974-69004993 None:intergenic 35.0%
TCTTCCTCTGAACATAATGA+AGG - chr5.1:69004980-69004999 None:intergenic 35.0%
TGAACCTTCATTATGTTCAG+AGG + chr5.1:69004973-69004992 MS.gene99407:CDS 35.0%
TGAAGCACAAGCAAAACAAA+TGG - chr5.1:69006935-69006954 None:intergenic 35.0%
TGGTTGCTAGTACAAATAGA+GGG + chr5.1:69005287-69005306 MS.gene99407:CDS 35.0%
TTCCCATTGCATAACAATGA+TGG + chr5.1:69007860-69007879 MS.gene99407:CDS 35.0%
TTGACCTGTGGCTATAAAAA+TGG - chr5.1:69007817-69007836 None:intergenic 35.0%
TTGGAAGGTTTACCATTAGA+AGG + chr5.1:69005127-69005146 MS.gene99407:CDS 35.0%
TTGGTTGCTAGTACAAATAG+AGG + chr5.1:69005286-69005305 MS.gene99407:CDS 35.0%
! GAACTTTCAACATTTTGAGC+TGG - chr5.1:69007843-69007862 None:intergenic 35.0%
! TCAGTTGAAGTTTTTCTTGG+AGG + chr5.1:69005411-69005430 MS.gene99407:CDS 35.0%
! TTATGTTTTCTTGACCTCTC+AGG + chr5.1:69008008-69008027 MS.gene99407:intron 35.0%
!! ATGAAAGGGATAGCTTTGTT+GGG + chr5.1:69005766-69005785 MS.gene99407:intron 35.0%
!! TATGAAAGGGATAGCTTTGT+TGG + chr5.1:69005765-69005784 MS.gene99407:intron 35.0%
AAATCCCATCCAAAAGGCAA+CGG - chr5.1:69006870-69006889 None:intergenic 40.0%
AACATGCTCAAAAACCTTGC+TGG + chr5.1:69007732-69007751 MS.gene99407:CDS 40.0%
AAGGTCTCTCCCATCATTTA+CGG - chr5.1:69007889-69007908 None:intergenic 40.0%
AATGAACATGGTCTCCAAAG+GGG + chr5.1:69006774-69006793 MS.gene99407:CDS 40.0%
AATTGGACCACTTCCATGAA+AGG - chr5.1:69006967-69006986 None:intergenic 40.0%
ACAAGGAAATCCCATCCAAA+AGG - chr5.1:69006876-69006895 None:intergenic 40.0%
ACATAATGAAGGTTCAGGTG+AGG - chr5.1:69004969-69004988 None:intergenic 40.0%
ACATCAGGAAGATCTTTGGA+AGG + chr5.1:69005112-69005131 MS.gene99407:CDS 40.0%
ACGAACATCAGGAAGATCTT+TGG + chr5.1:69005108-69005127 MS.gene99407:CDS 40.0%
AGGGTATATTCAAATTCCGG+TGG + chr5.1:69005195-69005214 MS.gene99407:CDS 40.0%
AGGTATGCTACCTTCAACAA+CGG - chr5.1:69005020-69005039 None:intergenic 40.0%
ATGCCAATAACATCCATGTC+AGG - chr5.1:69006835-69006854 None:intergenic 40.0%
ATTGGACCACTTCCATGAAA+GGG - chr5.1:69006966-69006985 None:intergenic 40.0%
CAAAGAAGATGTGGTGAAGA+AGG + chr5.1:69007674-69007693 MS.gene99407:CDS 40.0%
CAATACCGAAGAAACCTAGA+AGG - chr5.1:69004835-69004854 None:intergenic 40.0%
CAGAAACAATGTTACTGGCA+TGG - chr5.1:69007794-69007813 None:intergenic 40.0%
CCATGTTGTAGTTGTAACTG+AGG - chr5.1:69006140-69006159 None:intergenic 40.0%
CCTCAGTTACAACTACAACA+TGG + chr5.1:69006137-69006156 MS.gene99407:intron 40.0%
GAAGCTTTACAACGAACATC+AGG + chr5.1:69005097-69005116 MS.gene99407:CDS 40.0%
GAATGAACATGGTCTCCAAA+GGG + chr5.1:69006773-69006792 MS.gene99407:CDS 40.0%
GCTTCGTTTATCTACCTTCT+AGG + chr5.1:69004818-69004837 MS.gene99407:CDS 40.0%
GGGTATATTCAAATTCCGGT+GGG + chr5.1:69005196-69005215 MS.gene99407:CDS 40.0%
GTAGATAAACGAAGCGATGA+GGG - chr5.1:69004813-69004832 None:intergenic 40.0%
GTGAAATTGACGACATGAAG+AGG - chr5.1:69004770-69004789 None:intergenic 40.0%
TAAAACAGCTCCAGCAACAA+TGG - chr5.1:69008148-69008167 None:intergenic 40.0%
TAAAGCTTCACGACGAATTG+CGG - chr5.1:69005086-69005105 None:intergenic 40.0%
TCCCTCAATCCAATTAACTG+CGG - chr5.1:69007622-69007641 None:intergenic 40.0%
TCGAAATGATTTCCCTGACA+TGG + chr5.1:69006819-69006838 MS.gene99407:CDS 40.0%
TGATGGAAGCCGTAAATGAT+GGG + chr5.1:69007877-69007896 MS.gene99407:CDS 40.0%
TGCAAAATCACCTCAATGGA+TGG - chr5.1:69007930-69007949 None:intergenic 40.0%
TGCCAATAACATCCATGTCA+GGG - chr5.1:69006834-69006853 None:intergenic 40.0%
TGGTATTCATGACATCATGC+AGG - chr5.1:69006915-69006934 None:intergenic 40.0%
TGTCAGGGAAATCATTTCGA+AGG - chr5.1:69006819-69006838 None:intergenic 40.0%
TTCACACATTGTCCCTTTCA+TGG + chr5.1:69006951-69006970 MS.gene99407:intron 40.0%
TTCCCTGACATGGATGTTAT+TGG + chr5.1:69006829-69006848 MS.gene99407:CDS 40.0%
! AATTTCCGTTGCCTTTTGGA+TGG + chr5.1:69006862-69006881 MS.gene99407:intron 40.0%
! AGGTAATTTCCGTTGCCTTT+TGG + chr5.1:69006858-69006877 MS.gene99407:intron 40.0%
! ATGATGGAAGCCGTAAATGA+TGG + chr5.1:69007876-69007895 MS.gene99407:CDS 40.0%
! ATTTCCGTTGCCTTTTGGAT+GGG + chr5.1:69006863-69006882 MS.gene99407:intron 40.0%
! TCGGTTGATTAGCTCAAATG+AGG + chr5.1:69005714-69005733 MS.gene99407:intron 40.0%
!! GAAGAAGGTATTGAAGACCA+AGG + chr5.1:69007689-69007708 MS.gene99407:CDS 40.0%
!! TGTTTGTTTGCTGTCGTTTC+AGG + chr5.1:69006656-69006675 MS.gene99407:intron 40.0%
!! TTGAACATGCTTGGTGTGAA+GGG + chr5.1:69008078-69008097 MS.gene99407:CDS 40.0%
!!! CATTGGCTGTTGTTTTCAAC+AGG + chr5.1:69005452-69005471 MS.gene99407:CDS 40.0%
!!! TCTGCCATTTTTATAGCCAC+AGG + chr5.1:69007810-69007829 MS.gene99407:CDS 40.0%
AAGAGTCTCGAGTTTGATCC+TGG - chr5.1:69008120-69008139 None:intergenic 45.0%
ACACTGAATACCTAGCAACC+TGG - chr5.1:69006695-69006714 None:intergenic 45.0%
ACGCGGGAAATGAATCCTTA+TGG - chr5.1:69006080-69006099 None:intergenic 45.0%
AGAAACCTGCCGCAGTTAAT+TGG + chr5.1:69007610-69007629 MS.gene99407:CDS 45.0%
AGGATCAAACTCGAGACTCT+TGG + chr5.1:69008119-69008138 MS.gene99407:CDS 45.0%
AGTAGATTTGCCAGGTTGCT+AGG + chr5.1:69006682-69006701 MS.gene99407:CDS 45.0%
AGTGACAATGCCATCCATTG+AGG + chr5.1:69007917-69007936 MS.gene99407:CDS 45.0%
AGTGTTGTGAAATGCCGGTA+GGG + chr5.1:69005176-69005195 MS.gene99407:CDS 45.0%
ATTGACGACATGAAGAGGAG+TGG - chr5.1:69004765-69004784 None:intergenic 45.0%
CATTGTCCCTTTCATGGAAG+TGG + chr5.1:69006957-69006976 MS.gene99407:intron 45.0%
CGTATTATCTCCTCCACAGA+TGG + chr5.1:69004720-69004739 MS.gene99407:CDS 45.0%
CTTCCTATTCACTCGAATCG+CGG + chr5.1:69005038-69005057 MS.gene99407:CDS 45.0%
CTTCGCAATATACCAGAACG+CGG - chr5.1:69006097-69006116 None:intergenic 45.0%
GCCGCAGTTAATTGGATTGA+GGG + chr5.1:69007618-69007637 MS.gene99407:CDS 45.0%
GCTAGGTATTCAGTGTGCTA+TGG + chr5.1:69006699-69006718 MS.gene99407:CDS 45.0%
GGAATGAACATGGTCTCCAA+AGG + chr5.1:69006772-69006791 MS.gene99407:CDS 45.0%
GGGATGCAAAATCACCTCAA+TGG - chr5.1:69007934-69007953 None:intergenic 45.0%
GGTAGATAAACGAAGCGATG+AGG - chr5.1:69004814-69004833 None:intergenic 45.0%
GTATTCAGTGTGCTATGGCT+GGG + chr5.1:69006704-69006723 MS.gene99407:CDS 45.0%
GTTAATTGGATTGAGGGACG+CGG + chr5.1:69007624-69007643 MS.gene99407:CDS 45.0%
TATTCAAATTCCGGTGGGTG+TGG + chr5.1:69005201-69005220 MS.gene99407:CDS 45.0%
TCAATCCAATTAACTGCGGC+AGG - chr5.1:69007618-69007637 None:intergenic 45.0%
TCACATTGTGGTCACAACTG+AGG - chr5.1:69005991-69006010 None:intergenic 45.0%
TCTGCTTGCTTGAACATGCT+TGG + chr5.1:69008069-69008088 MS.gene99407:CDS 45.0%
TGATGCCATGGGAATGAACA+TGG + chr5.1:69006762-69006781 MS.gene99407:CDS 45.0%
TGATGTCTGCCATTGCTTCA+GGG + chr5.1:69008184-69008203 MS.gene99407:CDS 45.0%
TGCCGCAGTTAATTGGATTG+AGG + chr5.1:69007617-69007636 MS.gene99407:CDS 45.0%
TTAATTGGATTGAGGGACGC+GGG + chr5.1:69007625-69007644 MS.gene99407:CDS 45.0%
TTCCAATGGCGACTACAGAA+GGG + chr5.1:69005260-69005279 MS.gene99407:CDS 45.0%
TTCGCAATATACCAGAACGC+GGG - chr5.1:69006096-69006115 None:intergenic 45.0%
! ATTTGAGACGGTGGGAATGA+GGG - chr5.1:69004604-69004623 None:intergenic 45.0%
! GAAGAAGAGCGTGAAGAAGA+TGG - chr5.1:69004693-69004712 None:intergenic 45.0%
! GAGCATGTTTAGCTCCACTA+GGG - chr5.1:69007721-69007740 None:intergenic 45.0%
! GTTTTCTTGACCTCTCAGGT+GGG + chr5.1:69008012-69008031 MS.gene99407:intron 45.0%
! TGAGCATGTTTAGCTCCACT+AGG - chr5.1:69007722-69007741 None:intergenic 45.0%
! TGTTTTCTTGACCTCTCAGG+TGG + chr5.1:69008011-69008030 MS.gene99407:intron 45.0%
! TTTTGGCATGCCGTGATTAC+AGG - chr5.1:69007509-69007528 None:intergenic 45.0%
!! AAGGGATAGCTTTGTTGGGT+TGG + chr5.1:69005770-69005789 MS.gene99407:intron 45.0%
!! AGGGATAGCTTTGTTGGGTT+GGG + chr5.1:69005771-69005790 MS.gene99407:intron 45.0%
!! CTTGAACATGCTTGGTGTGA+AGG + chr5.1:69008077-69008096 MS.gene99407:CDS 45.0%
!! GAAGGTATTGAAGACCAAGG+TGG + chr5.1:69007692-69007711 MS.gene99407:CDS 45.0%
!! TGAAGAAGATGGTGTTGGTG+AGG - chr5.1:69004682-69004701 None:intergenic 45.0%
!! AAAAACAAATAATAAATTTA+AGG - chr5.1:69006542-69006561 None:intergenic 5.0%
!! ATACAAAAAATAATAATTTA+TGG + chr5.1:69006623-69006642 MS.gene99407:intron 5.0%
AAAATGTTAACCGGTGCCCC+CGG - chr5.1:69006519-69006538 None:intergenic 50.0%
AAGAACGTTCTGCACCCCTT+TGG - chr5.1:69006791-69006810 None:intergenic 50.0%
ACGCGCTTCTCATGATGGTT+GGG + chr5.1:69004877-69004896 MS.gene99407:CDS 50.0%
AGCGATGAGGGAAACAATGG+CGG - chr5.1:69004801-69004820 None:intergenic 50.0%
AGGATTCATTTCCCGCGTTC+TGG + chr5.1:69006082-69006101 MS.gene99407:intron 50.0%
AGGGCAGTGTTGTGAAATGC+CGG + chr5.1:69005171-69005190 MS.gene99407:CDS 50.0%
ATGTAGTACGGGTGATGCCA+TGG + chr5.1:69006750-69006769 MS.gene99407:CDS 50.0%
CAGTGTTGTGAAATGCCGGT+AGG + chr5.1:69005175-69005194 MS.gene99407:CDS 50.0%
CATGAAGAGGAGTGGAGCTA+CGG - chr5.1:69004757-69004776 None:intergenic 50.0%
CGAAGCGATGAGGGAAACAA+TGG - chr5.1:69004804-69004823 None:intergenic 50.0%
CGCGATTCGAGTGAATAGGA+AGG - chr5.1:69005040-69005059 None:intergenic 50.0%
CTCTTGGCAACCATTGTTGC+TGG + chr5.1:69008135-69008154 MS.gene99407:CDS 50.0%
CTGATGTCTGCCATTGCTTC+AGG + chr5.1:69008183-69008202 MS.gene99407:CDS 50.0%
GAGCGTGAAGAAGATGGTGT+TGG - chr5.1:69004687-69004706 None:intergenic 50.0%
GAGGGGAACGTGATTTGAGA+CGG - chr5.1:69004616-69004635 None:intergenic 50.0%
GGAGACCATGTTCATTCCCA+TGG - chr5.1:69006770-69006789 None:intergenic 50.0%
GGTATTCAGTGTGCTATGGC+TGG + chr5.1:69006703-69006722 MS.gene99407:CDS 50.0%
GTGGAGGAGATAATACGCGA+CGG - chr5.1:69004717-69004736 None:intergenic 50.0%
GTTCAGGTGAGGTGAGTTTG+CGG - chr5.1:69004958-69004977 None:intergenic 50.0%
GTTCCAATGGCGACTACAGA+AGG + chr5.1:69005259-69005278 MS.gene99407:CDS 50.0%
TATTCACTCGAATCGCGGCT+CGG + chr5.1:69005043-69005062 MS.gene99407:CDS 50.0%
TCAGGTCGAGTAGATTTGCC+AGG + chr5.1:69006674-69006693 MS.gene99407:intron 50.0%
TGTAGTACGGGTGATGCCAT+GGG + chr5.1:69006751-69006770 MS.gene99407:CDS 50.0%
TGTTTCCTTAACCAGTGCCC+CGG - chr5.1:69006390-69006409 None:intergenic 50.0%
TTGAGCTGGATCTTGACCTG+TGG - chr5.1:69007829-69007848 None:intergenic 50.0%
TTTGCGGAGAGGCTGATTGA+CGG - chr5.1:69004942-69004961 None:intergenic 50.0%
! GACTAGTTGCCCTGAAGCAA+TGG - chr5.1:69008196-69008215 None:intergenic 50.0%
! GATTTGAGACGGTGGGAATG+AGG - chr5.1:69004605-69004624 None:intergenic 50.0%
! GCATCAGAGGCTTTTGGTGA+TGG - chr5.1:69004641-69004660 None:intergenic 50.0%
! GGAACGTGATTTGAGACGGT+GGG - chr5.1:69004612-69004631 None:intergenic 50.0%
!! ATGGTGTTGGTGAGGTAGAG+AGG - chr5.1:69004674-69004693 None:intergenic 50.0%
!! TGGTGTTGGTGAGGTAGAGA+GGG - chr5.1:69004673-69004692 None:intergenic 50.0%
!!! AGGCTTTTGGTGATGGTGGA+GGG - chr5.1:69004634-69004653 None:intergenic 50.0%
!!! GTTGCTGGAGCTGTTTTAGC+TGG + chr5.1:69008150-69008169 MS.gene99407:CDS 50.0%
!!! TCAGAGGCTTTTGGTGATGG+TGG - chr5.1:69004638-69004657 None:intergenic 50.0%
AAATGTTAACCGGTGCCCCC+GGG - chr5.1:69006518-69006537 None:intergenic 55.0%
ACCTCTCAGGTGGGTACAGT+AGG + chr5.1:69008021-69008040 MS.gene99407:intron 55.0%
AGCATCCTTAACCAGTGCCC+CGG + chr5.1:69006497-69006516 MS.gene99407:intron 55.0%
AGCTTCACGACGAATTGCGG+CGG - chr5.1:69005083-69005102 None:intergenic 55.0%
AGGCTGATTGACGGTGGTGT+TGG - chr5.1:69004933-69004952 None:intergenic 55.0%
CACCCTTCTGTAGTCGCCAT+TGG - chr5.1:69005265-69005284 None:intergenic 55.0%
CACGCGCTTCTCATGATGGT+TGG + chr5.1:69004876-69004895 MS.gene99407:CDS 55.0%
CAGCAACAGCAGAACCAGCA+AGG - chr5.1:69007749-69007768 None:intergenic 55.0%
CCTCTCAGGTGGGTACAGTA+GGG + chr5.1:69008022-69008041 MS.gene99407:intron 55.0%
CTCTCAGGTGGGTACAGTAG+GGG + chr5.1:69008023-69008042 MS.gene99407:intron 55.0%
GAGCCGCGATTCGAGTGAAT+AGG - chr5.1:69005044-69005063 None:intergenic 55.0%
GCAACACGCGCTTCTCATGA+TGG + chr5.1:69004872-69004891 MS.gene99407:CDS 55.0%
GGAAACAATGGCGGCGAGTT+CGG - chr5.1:69004792-69004811 None:intergenic 55.0%
GGATCTTGTCACGCCATCTG+TGG - chr5.1:69004736-69004755 None:intergenic 55.0%
GTTTCCTTAACCAGTGCCCC+GGG - chr5.1:69006389-69006408 None:intergenic 55.0%
TCAAATTCCGGTGGGTGTGG+CGG + chr5.1:69005204-69005223 MS.gene99407:CDS 55.0%
TCTCAGGTGGGTACAGTAGG+GGG + chr5.1:69008024-69008043 MS.gene99407:intron 55.0%
TCTGCTGTTGCTGGCACTCT+TGG + chr5.1:69007756-69007775 MS.gene99407:CDS 55.0%
TCTTGTCACGCCATCTGTGG+AGG - chr5.1:69004733-69004752 None:intergenic 55.0%
TGGTGAGGTAGAGAGGGAGA+GGG - chr5.1:69004667-69004686 None:intergenic 55.0%
TTGGTGAGGTAGAGAGGGAG+AGG - chr5.1:69004668-69004687 None:intergenic 55.0%
TTTCCTTAACCAGTGCCCCG+GGG - chr5.1:69006388-69006407 None:intergenic 55.0%
! GCGGGACCATTGTTGTTGGA+TGG + chr5.1:69005223-69005242 MS.gene99407:CDS 55.0%
! GGGAACGTGATTTGAGACGG+TGG - chr5.1:69004613-69004632 None:intergenic 55.0%
! GTTGGTCGTGGTGGTGATGA+CGG - chr5.1:69004915-69004934 None:intergenic 55.0%
! TGGTGTGAAGGGTGCAAGCA+AGG + chr5.1:69008089-69008108 MS.gene99407:CDS 55.0%
! TGTGAAGGGTGCAAGCAAGG+AGG + chr5.1:69008092-69008111 MS.gene99407:CDS 55.0%
! TGTGGCGGGACCATTGTTGT+TGG + chr5.1:69005219-69005238 MS.gene99407:CDS 55.0%
!! ATTGACGGTGGTGTTGGTCG+TGG - chr5.1:69004927-69004946 None:intergenic 55.0%
!! CTTGCTGGTTCTGCTGTTGC+TGG + chr5.1:69007747-69007766 MS.gene99407:CDS 55.0%
!! GGCGACTACAGAAGGGTGTT+TGG + chr5.1:69005267-69005286 MS.gene99407:CDS 55.0%
!! TGGTGATGACGGTGTCATCG+AGG - chr5.1:69004904-69004923 None:intergenic 55.0%
!!! GAGGCTTTTGGTGATGGTGG+AGG - chr5.1:69004635-69004654 None:intergenic 55.0%
!!! GGCTTTTGGTGATGGTGGAG+GGG - chr5.1:69004633-69004652 None:intergenic 55.0%
!!! GGGAGAGCATCAGAGGCTTT+TGG - chr5.1:69004647-69004666 None:intergenic 55.0%
AATGTTAACCGGTGCCCCCG+GGG - chr5.1:69006517-69006536 None:intergenic 60.0%
AGGTGGGTACAGTAGGGGGT+GGG + chr5.1:69008028-69008047 MS.gene99407:intron 60.0%
ATCCTTAACCAGTGCCCCGG+GGG + chr5.1:69006500-69006519 MS.gene99407:intron 60.0%
CAAATTCCGGTGGGTGTGGC+GGG + chr5.1:69005205-69005224 MS.gene99407:CDS 60.0%
CATCCTTAACCAGTGCCCCG+GGG + chr5.1:69006499-69006518 MS.gene99407:intron 60.0%
CCCTACTGTACCCACCTGAG+AGG - chr5.1:69008025-69008044 None:intergenic 60.0%
CTCCACTAGGGAAGCCACCT+TGG - chr5.1:69007709-69007728 None:intergenic 60.0%
GACCAAGGTGGCTTCCCTAG+TGG + chr5.1:69007704-69007723 MS.gene99407:CDS 60.0%
GAGACGGTGGGAATGAGGGT+TGG - chr5.1:69004600-69004619 None:intergenic 60.0%
GCATCCTTAACCAGTGCCCC+GGG + chr5.1:69006498-69006517 MS.gene99407:intron 60.0%
GCTGTTGCTGGCACTCTTGG+CGG + chr5.1:69007759-69007778 MS.gene99407:CDS 60.0%
GGTGAGGTGAGTTTGCGGAG+AGG - chr5.1:69004953-69004972 None:intergenic 60.0%
GGTGCAAGCAAGGAGGAACC+AGG + chr5.1:69008099-69008118 MS.gene99407:CDS 60.0%
GTCGTGTTAACCAGTGCCCC+CGG + chr5.1:69006368-69006387 MS.gene99407:intron 60.0%
TCGTGTTAACCAGTGCCCCC+GGG + chr5.1:69006369-69006388 MS.gene99407:intron 60.0%
TTCCTTAACCAGTGCCCCGG+GGG - chr5.1:69006387-69006406 None:intergenic 60.0%
!! AGGGAGAGGGAGAGCATCAG+AGG - chr5.1:69004654-69004673 None:intergenic 60.0%
!! GGAATGAGGGTTGGTCGCGA+CGG - chr5.1:69004591-69004610 None:intergenic 60.0%
AATGGTCCCGCCACACCCAC+CGG - chr5.1:69005214-69005233 None:intergenic 65.0%
CACGACGAATTGCGGCGGCT+CGG - chr5.1:69005078-69005097 None:intergenic 65.0%
CAGGTGGGTACAGTAGGGGG+TGG + chr5.1:69008027-69008046 MS.gene99407:intron 65.0%
CGTGTTAACCAGTGCCCCCG+GGG + chr5.1:69006370-69006389 MS.gene99407:intron 65.0%
GCGGAGAGGCTGATTGACGG+TGG - chr5.1:69004939-69004958 None:intergenic 65.0%
!! GACGGTGGTGTTGGTCGTGG+TGG - chr5.1:69004924-69004943 None:intergenic 65.0%
!! ACGGCGCCGGTGGTGGTTTG+CGG - chr5.1:69004572-69004591 None:intergenic 70.0%
!! TGCCCCCGGGGCACTGGTTA+AGG + chr5.1:69006382-69006401 MS.gene99407:intron 70.0%
!! TGCCCCCGGGGCACTGGTTA+AGG - chr5.1:69006401-69006382 None:intergenic 70.0%
AACCAGTGCCCCCGGGGCAC+TGG + chr5.1:69006376-69006395 MS.gene99407:intron 75.0%
CGGCCGCCGCAAACCACCAC+CGG + chr5.1:69004563-69004582 MS.gene99407:CDS 75.0%
TTTGCGGCGGCCGGCGATGG+AGG - chr5.1:69004556-69004575 None:intergenic 75.0%
! AACCAGTGCCCCGGGGGCAC+CGG + chr5.1:69006506-69006525 MS.gene99407:intron 75.0%
! AACCAGTGCCCCGGGGGCAC+TGG - chr5.1:69006525-69006506 None:intergenic 75.0%
! CGGTGGTGGTTTGCGGCGGC+CGG - chr5.1:69004565-69004584 None:intergenic 75.0%
! GCGCCGGTGGTGGTTTGCGG+CGG - chr5.1:69004569-69004588 None:intergenic 75.0%
! TGGTTTGCGGCGGCCGGCGA+TGG - chr5.1:69004559-69004578 None:intergenic 75.0%
!! AGGGTTGGTCGCGACGGCGC+CGG - chr5.1:69004585-69004604 None:intergenic 75.0%
! AACCGGTGCCCCCGGGGCAC+TGG - chr5.1:69006511-69006530 None:intergenic 80.0%
!! GTTGGTCGCGACGGCGCCGG+TGG - chr5.1:69004582-69004601 None:intergenic 80.0%
!!! GGTCGCGACGGCGCCGGTGG+TGG - chr5.1:69004579-69004598 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 69004548 69008272 69004548 ID=MS.gene99407
chr5.1 mRNA 69004548 69008272 69004548 ID=MS.gene99407.t1;Parent=MS.gene99407
chr5.1 exon 69004548 69005473 69004548 ID=MS.gene99407.t1.exon1;Parent=MS.gene99407.t1
chr5.1 CDS 69004548 69005473 69004548 ID=cds.MS.gene99407.t1;Parent=MS.gene99407.t1
chr5.1 exon 69006678 69006859 69006678 ID=MS.gene99407.t1.exon2;Parent=MS.gene99407.t1
chr5.1 CDS 69006678 69006859 69006678 ID=cds.MS.gene99407.t1;Parent=MS.gene99407.t1
chr5.1 exon 69007592 69007938 69007592 ID=MS.gene99407.t1.exon3;Parent=MS.gene99407.t1
chr5.1 CDS 69007592 69007938 69007592 ID=cds.MS.gene99407.t1;Parent=MS.gene99407.t1
chr5.1 exon 69008030 69008272 69008030 ID=MS.gene99407.t1.exon4;Parent=MS.gene99407.t1
chr5.1 CDS 69008030 69008272 69008030 ID=cds.MS.gene99407.t1;Parent=MS.gene99407.t1
Gene Sequence

>MS.gene99407

ATGGACCTCCATCGCCGGCCGCCGCAAACCACCACCGGCGCCGTCGCGACCAACCCTCATTCCCACCGTCTCAAATCACGTTCCCCTCCACCATCACCAAAAGCCTCTGATGCTCTCCCTCTCCCTCTCTACCTCACCAACACCATCTTCTTCACGCTCTTCTTCTCCGTCGCGTATTATCTCCTCCACAGATGGCGTGACAAGATCCGTAGCTCCACTCCTCTTCATGTCGTCAATTTCACCGAACTCGCCGCCATTGTTTCCCTCATCGCTTCGTTTATCTACCTTCTAGGTTTCTTCGGTATTGATTTCGTTCAATCGTTTGCAACACGCGCTTCTCATGATGGTTGGGACCTCGATGACACCGTCATCACCACCACGACCAACACCACCGTCAATCAGCCTCTCCGCAAACTCACCTCACCTGAACCTTCATTATGTTCAGAGGAAGATAATTCAATTGTAAACTCCGTTGTTGAAGGTAGCATACCTTCCTATTCACTCGAATCGCGGCTCGGAGATTGTTTCCGAGCCGCCGCAATTCGTCGTGAAGCTTTACAACGAACATCAGGAAGATCTTTGGAAGGTTTACCATTAGAAGGATTTGATTACGAAGCGATTTTAGGGCAGTGTTGTGAAATGCCGGTAGGGTATATTCAAATTCCGGTGGGTGTGGCGGGACCATTGTTGTTGGATGGATTTGAATATACGGTTCCAATGGCGACTACAGAAGGGTGTTTGGTTGCTAGTACAAATAGAGGGTGTAAAGCTATATATGCTTCTGGTGGTGCTGAGAGTGTTGTTTTGAGAGATGCTATGTCTAGAGCACCTGTTGTTAGATTTTCTACTGCTAAAAGAGCTTCTCAGTTGAAGTTTTTCTTGGAGGATCCGTTGAATTCTGATACATTGGCTGTTGTTTTCAACAGGTTTGCTTCTTTTTTTGAATTTTGATTTTGAAAGGTTTTGCATTTAGTGAAATTAATTTAGTTTTGTTTGGATAATCAACTTAATTAAGTGTTTATGTATGAATTATTGATATAACTATTTTCATATACGCTATAAGCTGTTTTCGTAAGTTATATCAGAGCATTTGTCGAGAGAATTTGTCAGTTGTTTTCATAATTGTCATAAGTTGTTTTCATAAGTTCTTCTAAACAGTGTTAATGTCGGTTGATTAGCTCAAATGAGGTAATTCAAATTGGCTCTTATTATTGGTATATGAAAGGGATAGCTTTGTTGGGTTGGGTTGTACTGTCATGTCATTTTCATTGAATTATGAAAATCTTGCATGTGGGAAGATAACAATGTTTCTAATAGTGAAGTGAAATTATTGGTATTTGAAAGGTATTGGTTAGTTTCTAAAAATACATGTACTGACAATCAATGTTTTAAATTTTTTGTCGCCTAGCGATGTATTGTGAAGAATTGTGGTATATGCAGCCTCAGTTGTGACCACAATGTGAAGATATTTAAAGCATTTGAAAAAGTAAAAGCGTTGTTTTTAACTTGTTGGACTTGGGATTTGAATTCCATAAGGATTCATTTCCCGCGTTCTGGTATATTGCGAAGAATCATAGTCAAATATGAAACCTCAGTTACAACTACAACATGGAGACAGTAAAAACTTTGATGTCGTGGCATAAATTTGCAGAGATTTTCTTTTACGAAAATCCTATTGACAATAATAGGTGTGAATGTGGTTAATTTGATCATTTACTCTCTTAATTTACGTCATTTATTTTGTTTGTTGATTTGTGTTTTTTTCTTTTTTCATTCTACAAAGTTTGACATCAATGTGTTTTTCAATGTTTAAATTTAGGGTCGTGTTAACCAGTGCCCCCGGGGCACTGGTTAAGGAAACAAATATAGTAATATTTGCATTGATAGTTGTGTAATCAATGCATTAAAAGCTTAAAAGGTATCTTTTTTGACTTAAAATTTCTTCTTTTAGCATCCTTAACCAGTGCCCCGGGGGCACCGGTTAACATTTTCCTTAAATTTATTATTTGTTTTTGTAAATTTGAGTAAAGAAAATAGAGGATTGTTTGAAATTGAATATGGTTTATTGGGTTTTTATACAAAAAATAATAATTTATGGTGAGTTTTGGTGTTTGTTTGCTGTCGTTTCAGGTCGAGTAGATTTGCCAGGTTGCTAGGTATTCAGTGTGCTATGGCTGGGAAGAATCTTTATATGAGATTTACATGTAGTACGGGTGATGCCATGGGAATGAACATGGTCTCCAAAGGGGTGCAGAACGTTCTTGATTTCCTTCGAAATGATTTCCCTGACATGGATGTTATTGGCATATCAGGTAATTTCCGTTGCCTTTTGGATGGGATTTCCTTGTTTCTTCTCTAGTTAAGCCTGCATGATGTCATGAATACCATTTGTTTTGCTTGTGCTTCACACATTGTCCCTTTCATGGAAGTGGTCCAATTACATTATTTACACTTGTTTTTTTTCTTCATGAAAGTGGTTCAATTGCATTTTCTTATCTTTTCCATTGTCATCATTGATTTTATCCATATTTTATTGTTATAGGTGTTATATGATTTGAACTGGTAATTTATTCCATAAATTCAATACATTGGTGTTATTGTAGTTTCACTTATGAATATGAAATTGTCAAATTGAATTCTCATACAAGCTTGATTTATTTGTTTTATCTGCTTTTTGAGAAAAGGGTTATGCAAAAGCATGGTGTGAAAATTAAACTTTGGCACTGCTCTCGATGTCACCACCAATTTATTTATATTTCTAGTTTGATTAGATTCCTAATGTGTTCTAGCATTTATTTCTTTTGTCGTGTCAAATCCTGTTTGATATTTAGTCTTCCAGTTAACTTGCATTTTTGAATGTGTTACTATCTTTTGAATCCTGTTTGATATTTAGTCTTCCAGTTAACTTGCATTTTTGAATGTGTTACTATCTTAATCTCCTTATTTGGTTATTTGATTCCTGTAATCACGGCATGCCAAAATATTTTTAATGGGAACATTGGACCAAAAATGTAATGGTTGTTTGTACTGACTTGATTCTTTAGGAAATTATTGTTCGGATAAGAAACCTGCCGCAGTTAATTGGATTGAGGGACGCGGGAAATCAGTTGTTTGTGAAGCAATTATCAAAGAAGATGTGGTGAAGAAGGTATTGAAGACCAAGGTGGCTTCCCTAGTGGAGCTAAACATGCTCAAAAACCTTGCTGGTTCTGCTGTTGCTGGCACTCTTGGCGGATTCAATGCCCATGCCAGTAACATTGTTTCTGCCATTTTTATAGCCACAGGTCAAGATCCAGCTCAAAATGTTGAAAGTTCCCATTGCATAACAATGATGGAAGCCGTAAATGATGGGAGAGACCTTCATATTTCAGTGACAATGCCATCCATTGAGGTGATTTTGCATCCCTACAGTTTATTTTAATCTTAAATTTTTCCAATTTAATAGCTCTAGGCCTAAGTTTTATGTTTTCTTGACCTCTCAGGTGGGTACAGTAGGGGGTGGGACGCAACTTGCATCTCAATCTGCTTGCTTGAACATGCTTGGTGTGAAGGGTGCAAGCAAGGAGGAACCAGGATCAAACTCGAGACTCTTGGCAACCATTGTTGCTGGAGCTGTTTTAGCTGGCGAGCTGTCTCTGATGTCTGCCATTGCTTCAGGGCAACTAGTCAACAGCCACATGAAATACAACAGATCATGCAAAGATGTAACGAAAATGTCATCTTGA
Protein sequence

>MS.gene99407.t1

MDLHRRPPQTTTGAVATNPHSHRLKSRSPPPSPKASDALPLPLYLTNTIFFTLFFSVAYYLLHRWRDKIRSSTPLHVVNFTELAAIVSLIASFIYLLGFFGIDFVQSFATRASHDGWDLDDTVITTTTNTTVNQPLRKLTSPEPSLCSEEDNSIVNSVVEGSIPSYSLESRLGDCFRAAAIRREALQRTSGRSLEGLPLEGFDYEAILGQCCEMPVGYIQIPVGVAGPLLLDGFEYTVPMATTEGCLVASTNRGCKAIYASGGAESVVLRDAMSRAPVVRFSTAKRASQLKFFLEDPLNSDTLAVVFNRSSRFARLLGIQCAMAGKNLYMRFTCSTGDAMGMNMVSKGVQNVLDFLRNDFPDMDVIGISGNYCSDKKPAAVNWIEGRGKSVVCEAIIKEDVVKKVLKTKVASLVELNMLKNLAGSAVAGTLGGFNAHASNIVSAIFIATGQDPAQNVESSHCITMMEAVNDGRDLHISVTMPSIEVGTVGGGTQLASQSACLNMLGVKGASKEEPGSNSRLLATIVAGAVLAGELSLMSAIASGQLVNSHMKYNRSCKDVTKMSS