Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99724.t1 | AES98872.1 | 89.1 | 357 | 25 | 1 | 1 | 357 | 1 | 343 | 1.40E-177 | 632.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99724.t1 | Q9FGH9 | 43.3 | 411 | 199 | 11 | 1 | 385 | 214 | 616 | 1.5e-71 | 271.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99724.t1 | G7K5P7 | 89.1 | 357 | 25 | 1 | 1 | 357 | 1 | 343 | 9.8e-178 | 632.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053298 | MS.gene99724 | 0.823257 | 1.53E-53 | -1.69E-46 |
MS.gene053340 | MS.gene99724 | 0.829032 | 6.46E-55 | -1.69E-46 |
MS.gene053963 | MS.gene99724 | 0.810467 | 1.14E-50 | -1.69E-46 |
MS.gene054222 | MS.gene99724 | 0.806502 | 7.97E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99724.t1 | MTR_5g073900 | 89.076 | 357 | 25 | 1 | 1 | 357 | 1 | 343 | 0.0 | 640 |
MS.gene99724.t1 | MTR_5g074190 | 55.477 | 283 | 71 | 4 | 111 | 391 | 184 | 413 | 4.64e-93 | 288 |
MS.gene99724.t1 | MTR_5g073450 | 45.433 | 416 | 193 | 10 | 1 | 385 | 219 | 631 | 5.07e-90 | 285 |
MS.gene99724.t1 | MTR_5g073460 | 42.344 | 418 | 205 | 10 | 1 | 385 | 276 | 690 | 9.18e-86 | 275 |
MS.gene99724.t1 | MTR_5g074130 | 40.389 | 411 | 221 | 8 | 1 | 389 | 269 | 677 | 1.99e-84 | 273 |
MS.gene99724.t1 | MTR_5g073920 | 37.530 | 421 | 235 | 8 | 1 | 402 | 263 | 674 | 8.80e-79 | 257 |
MS.gene99724.t1 | MTR_3g031130 | 41.627 | 418 | 202 | 12 | 1 | 385 | 209 | 617 | 5.00e-75 | 245 |
MS.gene99724.t1 | MTR_3g464010 | 37.470 | 411 | 233 | 7 | 1 | 391 | 266 | 672 | 4.71e-73 | 241 |
MS.gene99724.t1 | MTR_5g073960 | 71.622 | 148 | 42 | 0 | 1 | 148 | 268 | 415 | 4.14e-67 | 219 |
MS.gene99724.t1 | MTR_5g093530 | 38.701 | 354 | 183 | 7 | 47 | 389 | 244 | 574 | 1.07e-65 | 219 |
MS.gene99724.t1 | MTR_5g073480 | 37.438 | 406 | 172 | 15 | 1 | 381 | 277 | 625 | 2.89e-52 | 184 |
MS.gene99724.t1 | MTR_5g073620 | 38.047 | 297 | 149 | 8 | 5 | 284 | 309 | 587 | 1.01e-42 | 160 |
MS.gene99724.t1 | MTR_5g073620 | 34.959 | 246 | 139 | 5 | 150 | 386 | 834 | 1067 | 8.56e-32 | 128 |
MS.gene99724.t1 | MTR_8g021330 | 27.483 | 433 | 258 | 14 | 1 | 385 | 179 | 603 | 1.04e-41 | 155 |
MS.gene99724.t1 | MTR_4g103540 | 28.302 | 424 | 254 | 14 | 1 | 385 | 266 | 678 | 1.07e-41 | 156 |
MS.gene99724.t1 | MTR_7g026630 | 28.904 | 429 | 253 | 13 | 1 | 385 | 228 | 648 | 2.09e-40 | 152 |
MS.gene99724.t1 | MTR_6g033310 | 27.674 | 430 | 252 | 13 | 5 | 385 | 304 | 723 | 5.63e-37 | 143 |
MS.gene99724.t1 | MTR_5g073780 | 36.709 | 237 | 130 | 5 | 164 | 391 | 2 | 227 | 2.45e-36 | 132 |
MS.gene99724.t1 | MTR_1g090620 | 26.107 | 429 | 261 | 12 | 1 | 385 | 223 | 639 | 6.09e-35 | 136 |
MS.gene99724.t1 | MTR_7g013770 | 26.995 | 426 | 255 | 13 | 6 | 385 | 249 | 664 | 8.93e-34 | 133 |
MS.gene99724.t1 | MTR_1g057560 | 25.359 | 418 | 268 | 12 | 1 | 385 | 217 | 623 | 1.61e-31 | 126 |
MS.gene99724.t1 | MTR_1g117090 | 25.268 | 467 | 253 | 14 | 1 | 386 | 216 | 667 | 6.14e-29 | 119 |
MS.gene99724.t1 | MTR_5g073770 | 41.667 | 156 | 76 | 3 | 6 | 147 | 223 | 377 | 6.01e-24 | 102 |
MS.gene99724.t1 | MTR_2g096230 | 23.953 | 430 | 265 | 12 | 1 | 389 | 175 | 583 | 2.85e-23 | 102 |
MS.gene99724.t1 | MTR_3g025900 | 24.764 | 424 | 265 | 15 | 1 | 388 | 199 | 604 | 4.65e-21 | 95.9 |
MS.gene99724.t1 | MTR_1g067480 | 24.306 | 432 | 265 | 15 | 1 | 385 | 184 | 600 | 3.82e-20 | 92.8 |
MS.gene99724.t1 | MTR_5g073490 | 36.970 | 165 | 78 | 4 | 232 | 385 | 3 | 152 | 7.15e-20 | 86.3 |
MS.gene99724.t1 | MTR_4g024790 | 53.659 | 82 | 21 | 1 | 154 | 235 | 1 | 65 | 1.47e-16 | 73.9 |
MS.gene99724.t1 | MTR_4g062330 | 29.688 | 192 | 121 | 6 | 1 | 180 | 188 | 377 | 3.86e-15 | 77.8 |
MS.gene99724.t1 | MTR_7g017300 | 52.874 | 87 | 39 | 2 | 50 | 135 | 57 | 142 | 4.81e-15 | 72.4 |
MS.gene99724.t1 | MTR_5g073820 | 37.500 | 168 | 67 | 6 | 88 | 246 | 294 | 432 | 1.90e-14 | 75.1 |
MS.gene99724.t1 | MTR_4g008260 | 22.727 | 374 | 242 | 13 | 42 | 385 | 283 | 639 | 2.74e-12 | 68.9 |
MS.gene99724.t1 | MTR_7g017290 | 54.000 | 50 | 23 | 0 | 295 | 344 | 40 | 89 | 1.62e-11 | 60.5 |
MS.gene99724.t1 | MTR_4g023660 | 66.667 | 45 | 15 | 0 | 1 | 45 | 51 | 95 | 2.76e-11 | 60.1 |
MS.gene99724.t1 | MTR_5g073650 | 32.500 | 160 | 70 | 3 | 1 | 156 | 190 | 315 | 6.04e-11 | 63.5 |
MS.gene99724.t1 | MTR_5g073810 | 33.333 | 159 | 68 | 3 | 1 | 155 | 292 | 416 | 7.18e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99724.t1 | AT5G58430 | 43.066 | 411 | 200 | 11 | 1 | 385 | 214 | 616 | 1.68e-87 | 278 |
MS.gene99724.t1 | AT1G07000 | 34.951 | 412 | 228 | 10 | 1 | 385 | 196 | 594 | 1.08e-62 | 212 |
MS.gene99724.t1 | AT3G14090 | 26.730 | 419 | 259 | 11 | 1 | 377 | 191 | 603 | 4.98e-42 | 156 |
MS.gene99724.t1 | AT5G50380 | 26.777 | 422 | 267 | 10 | 1 | 385 | 253 | 669 | 1.38e-41 | 155 |
MS.gene99724.t1 | AT1G54090 | 27.187 | 423 | 253 | 12 | 1 | 377 | 188 | 601 | 3.32e-41 | 154 |
MS.gene99724.t1 | AT1G72470 | 27.778 | 432 | 257 | 14 | 1 | 385 | 196 | 619 | 2.24e-39 | 149 |
MS.gene99724.t1 | AT5G13990 | 29.762 | 420 | 241 | 14 | 5 | 385 | 275 | 679 | 7.92e-38 | 145 |
MS.gene99724.t1 | AT5G03540 | 26.651 | 424 | 260 | 12 | 1 | 385 | 102 | 513 | 1.04e-35 | 137 |
MS.gene99724.t1 | AT5G13150 | 27.714 | 433 | 253 | 13 | 1 | 385 | 222 | 642 | 1.81e-35 | 138 |
MS.gene99724.t1 | AT5G03540 | 26.761 | 426 | 257 | 11 | 1 | 385 | 217 | 628 | 1.98e-35 | 138 |
MS.gene99724.t1 | AT5G03540 | 26.761 | 426 | 257 | 11 | 1 | 385 | 243 | 654 | 2.58e-35 | 138 |
MS.gene99724.t1 | AT5G52340 | 25.481 | 416 | 268 | 12 | 1 | 385 | 217 | 621 | 5.77e-30 | 122 |
MS.gene99724.t1 | AT1G07725 | 27.949 | 390 | 231 | 13 | 1 | 354 | 187 | 562 | 1.39e-27 | 115 |
MS.gene99724.t1 | AT3G29400 | 24.494 | 445 | 262 | 14 | 1 | 385 | 215 | 645 | 1.94e-26 | 112 |
MS.gene99724.t1 | AT2G39380 | 25.000 | 428 | 266 | 11 | 1 | 385 | 193 | 608 | 3.63e-24 | 105 |
MS.gene99724.t1 | AT5G52350 | 25.352 | 426 | 268 | 16 | 1 | 391 | 171 | 581 | 1.25e-23 | 103 |
MS.gene99724.t1 | AT5G59730 | 26.667 | 435 | 254 | 18 | 1 | 385 | 177 | 596 | 3.58e-23 | 102 |
MS.gene99724.t1 | AT5G59730 | 26.667 | 435 | 254 | 18 | 1 | 385 | 177 | 596 | 3.66e-23 | 102 |
MS.gene99724.t1 | AT3G09530 | 25.000 | 432 | 269 | 15 | 1 | 385 | 177 | 600 | 2.19e-22 | 99.8 |
MS.gene99724.t1 | AT3G09520 | 24.775 | 444 | 254 | 17 | 1 | 385 | 182 | 604 | 4.38e-21 | 95.9 |
MS.gene99724.t1 | AT2G28640 | 27.146 | 431 | 263 | 15 | 1 | 393 | 167 | 584 | 1.29e-20 | 94.4 |
MS.gene99724.t1 | AT3G55150 | 23.502 | 434 | 264 | 12 | 1 | 385 | 194 | 608 | 3.59e-20 | 93.2 |
MS.gene99724.t1 | AT5G61010 | 22.494 | 409 | 265 | 11 | 12 | 385 | 233 | 624 | 6.71e-18 | 86.3 |
MS.gene99724.t1 | AT5G61010 | 22.494 | 409 | 265 | 11 | 12 | 385 | 233 | 624 | 6.71e-18 | 86.3 |
MS.gene99724.t1 | AT2G28650 | 24.804 | 383 | 245 | 10 | 1 | 354 | 159 | 527 | 1.18e-16 | 82.4 |
MS.gene99724.t1 | AT4G31540 | 20.652 | 368 | 263 | 9 | 43 | 386 | 293 | 655 | 5.46e-11 | 65.1 |
Find 55 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTTGTTCAATCATAAATTT+AGG | 0.141823 | 5.2:+62081264 | MS.gene99724:CDS |
GTGAAATTGATGGTGGATTT+TGG | 0.146469 | 5.2:+62080321 | None:intergenic |
AGGGAAGATTGGAAACATTT+TGG | 0.160041 | 5.2:+62081096 | MS.gene99724:CDS |
ATTGAGAAAGATGGAATTTC+AGG | 0.216696 | 5.2:+62080425 | MS.gene99724:CDS |
GAACAATCTATGTCACATTA+AGG | 0.232665 | 5.2:+62081076 | MS.gene99724:CDS |
GGAGCAGTTTGAGAGAAAAT+TGG | 0.245428 | 5.2:+62081001 | MS.gene99724:CDS |
TGCACAAATGGTGCTTATAA+TGG | 0.262322 | 5.2:+62080980 | MS.gene99724:CDS |
CATTGAATTTGCTTTAGAAT+TGG | 0.275073 | 5.2:-62081228 | None:intergenic |
GATGATGTTGATTGTGTTAG+AGG | 0.281773 | 5.2:+62081491 | MS.gene99724:CDS |
ATTGAAATCAGTTTGTTTCC+TGG | 0.319243 | 5.2:+62081356 | MS.gene99724:CDS |
ATTGAATTTGCTTTAGAATT+GGG | 0.341132 | 5.2:-62081227 | None:intergenic |
ATCATATAGTTGACGTTCAC+TGG | 0.350532 | 5.2:-62080505 | None:intergenic |
GAATTTCAGGATTACATGAT+TGG | 0.384710 | 5.2:+62080438 | MS.gene99724:CDS |
TTTGTTCAATCATAAATTTA+GGG | 0.390921 | 5.2:+62081265 | MS.gene99724:CDS |
ATTATTAGCATTGAGAAAGA+TGG | 0.400442 | 5.2:+62080416 | MS.gene99724:CDS |
GGGTACCCCTTAGTTGTTGA+TGG | 0.405637 | 5.2:+62080936 | MS.gene99724:CDS |
ATTGTGTTAGAGGATTAATT+AGG | 0.416010 | 5.2:+62081501 | MS.gene99724:CDS |
ATTCAGTCAATGAGCTTGTA+AGG | 0.418057 | 5.2:+62081524 | MS.gene99724:CDS |
TATTTCTCTGATGTTTGTCA+TGG | 0.418816 | 5.2:+62080567 | MS.gene99724:CDS |
ACAATGTTTCACAGTGTTGT+TGG | 0.429340 | 5.2:+62081395 | MS.gene99724:CDS |
AGGAAACAAACTGATTTCAA+TGG | 0.454537 | 5.2:-62081354 | None:intergenic |
TCCTGCTCCATCAACAACTA+AGG | 0.458253 | 5.2:-62080943 | None:intergenic |
AACAATCTATGTCACATTAA+GGG | 0.463303 | 5.2:+62081077 | MS.gene99724:CDS |
GATCTTTCTTACACCATATG+TGG | 0.463527 | 5.2:+62080806 | MS.gene99724:CDS |
ATGTCACATTAAGGGAAGAT+TGG | 0.464870 | 5.2:+62081085 | MS.gene99724:CDS |
CAACAATCTAACTCCACATA+TGG | 0.465562 | 5.2:-62080819 | None:intergenic |
CCCTTAGTTGTTGATGGAGC+AGG | 0.468854 | 5.2:+62080942 | MS.gene99724:CDS |
AGGATTACATGATTGGAAGA+TGG | 0.476310 | 5.2:+62080445 | MS.gene99724:CDS |
ATATGTGGAGTTAGATTGTT+GGG | 0.479056 | 5.2:+62080821 | MS.gene99724:CDS |
ATCATTGTTTCTTGATTCGT+TGG | 0.479186 | 5.2:+62080710 | MS.gene99724:CDS |
AGCCAAGTCAAAATATTATG+AGG | 0.483234 | 5.2:+62081025 | MS.gene99724:CDS |
GAGTTAGATTGTTGGGCTGA+TGG | 0.487239 | 5.2:+62080828 | MS.gene99724:CDS |
CTAGTGGCCTCACATGTCAT+TGG | 0.490339 | 5.2:-62080861 | None:intergenic |
TTAGATTGTTGGGCTGATGG+TGG | 0.508918 | 5.2:+62080831 | MS.gene99724:CDS |
TCAAACATACGCCATGTTGA+AGG | 0.515319 | 5.2:-62080639 | None:intergenic |
CATCATCTAGCAGAAACAAC+TGG | 0.516317 | 5.2:-62081475 | None:intergenic |
CATATGTGGAGTTAGATTGT+TGG | 0.518738 | 5.2:+62080820 | MS.gene99724:CDS |
CCTGCTCCATCAACAACTAA+GGG | 0.522317 | 5.2:-62080942 | None:intergenic |
CTTGTGGAATTCAGTCTACA+TGG | 0.534953 | 5.2:+62081291 | MS.gene99724:CDS |
TAGTATTCTAAGAGCAACCT+TGG | 0.539367 | 5.2:-62080478 | None:intergenic |
CAAACATACGCCATGTTGAA+GGG | 0.540085 | 5.2:-62080638 | None:intergenic |
CATAAATTTAGGGAGACTTG+TGG | 0.540938 | 5.2:+62081275 | MS.gene99724:CDS |
CAGTTACCGTAAGGAATGGT+TGG | 0.549924 | 5.2:+62080374 | MS.gene99724:CDS |
ACAACAGTTACCGTAAGGAA+TGG | 0.555501 | 5.2:+62080370 | MS.gene99724:CDS |
AGTCTTCCAACCATTCCTTA+CGG | 0.566989 | 5.2:-62080380 | None:intergenic |
AGCCGCGACGATGGAGCTAG+TGG | 0.583218 | 5.2:-62080877 | None:intergenic |
TCATATAGTTGACGTTCACT+GGG | 0.589257 | 5.2:-62080504 | None:intergenic |
AGTGAACGTCAACTATATGA+TGG | 0.592809 | 5.2:+62080507 | MS.gene99724:CDS |
CAAATCGAAGCCCTTCAACA+TGG | 0.595119 | 5.2:+62080628 | MS.gene99724:CDS |
GATTTACAACAGTTACCGTA+AGG | 0.610968 | 5.2:+62080365 | MS.gene99724:CDS |
TGCATACACGATATACTCAT+CGG | 0.615312 | 5.2:-62081426 | None:intergenic |
ACAGTGTCTCGAACAAGTTG+AGG | 0.663933 | 5.2:-62080665 | None:intergenic |
CTGCTCCATCAACAACTAAG+GGG | 0.676711 | 5.2:-62080941 | None:intergenic |
AGTACATCCAATGACATGTG+AGG | 0.717935 | 5.2:+62080854 | MS.gene99724:CDS |
GGCCACTAGCTCCATCGTCG+CGG | 0.724791 | 5.2:+62080875 | MS.gene99724:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTGTTCAATCATAAATTTA+GGG | + | chr5.2:62081265-62081284 | MS.gene99724:CDS | 15.0% |
!! | GTTTGTTCAATCATAAATTT+AGG | + | chr5.2:62081264-62081283 | MS.gene99724:CDS | 20.0% |
!!! | ATCTTTATTTTATGCACAAA+TGG | + | chr5.2:62080968-62080987 | MS.gene99724:CDS | 20.0% |
!!! | ATTGAATTTGCTTTAGAATT+GGG | - | chr5.2:62081230-62081249 | None:intergenic | 20.0% |
! | AACAATCTATGTCACATTAA+GGG | + | chr5.2:62081077-62081096 | MS.gene99724:CDS | 25.0% |
! | AGTAAAAATCAAGAATCGAT+TGG | + | chr5.2:62080743-62080762 | MS.gene99724:CDS | 25.0% |
! | ATTGTGTTAGAGGATTAATT+AGG | + | chr5.2:62081501-62081520 | MS.gene99724:CDS | 25.0% |
! | GTAAAAATCAAGAATCGATT+GGG | + | chr5.2:62080744-62080763 | MS.gene99724:CDS | 25.0% |
!! | AATAAGTAGAGACATTTTCA+TGG | + | chr5.2:62080770-62080789 | MS.gene99724:CDS | 25.0% |
!! | AATCTGGAGAAAATTTTACA+AGG | + | chr5.2:62080915-62080934 | MS.gene99724:CDS | 25.0% |
!! | ATCTGGAGAAAATTTTACAA+GGG | + | chr5.2:62080916-62080935 | MS.gene99724:CDS | 25.0% |
!! | ATTATTAGCATTGAGAAAGA+TGG | + | chr5.2:62080416-62080435 | MS.gene99724:CDS | 25.0% |
!!! | CATTGAATTTGCTTTAGAAT+TGG | - | chr5.2:62081231-62081250 | None:intergenic | 25.0% |
AAGATGGATAAAAACTTCCA+AGG | + | chr5.2:62080461-62080480 | MS.gene99724:CDS | 30.0% | |
AGAAAAAATAGCGCAAAGTA+CGG | - | chr5.2:62081052-62081071 | None:intergenic | 30.0% | |
AGCCAAGTCAAAATATTATG+AGG | + | chr5.2:62081025-62081044 | MS.gene99724:CDS | 30.0% | |
ATATGTGGAGTTAGATTGTT+GGG | + | chr5.2:62080821-62080840 | MS.gene99724:CDS | 30.0% | |
ATTGAGAAAGATGGAATTTC+AGG | + | chr5.2:62080425-62080444 | MS.gene99724:CDS | 30.0% | |
GAACAATCTATGTCACATTA+AGG | + | chr5.2:62081076-62081095 | MS.gene99724:CDS | 30.0% | |
GAATTTCAGGATTACATGAT+TGG | + | chr5.2:62080438-62080457 | MS.gene99724:CDS | 30.0% | |
TATTTCTCTGATGTTTGTCA+TGG | + | chr5.2:62080567-62080586 | MS.gene99724:CDS | 30.0% | |
! | AGAGACATTTTCATGGAATT+TGG | + | chr5.2:62080777-62080796 | MS.gene99724:CDS | 30.0% |
! | AGGAAACAAACTGATTTCAA+TGG | - | chr5.2:62081357-62081376 | None:intergenic | 30.0% |
! | ATCATTGTTTCTTGATTCGT+TGG | + | chr5.2:62080710-62080729 | MS.gene99724:CDS | 30.0% |
! | ATTGAAATCAGTTTGTTTCC+TGG | + | chr5.2:62081356-62081375 | MS.gene99724:CDS | 30.0% |
! | GAGACATTTTCATGGAATTT+GGG | + | chr5.2:62080778-62080797 | MS.gene99724:CDS | 30.0% |
! | GTAATGAACTTTTCATATCC+AGG | - | chr5.2:62081377-62081396 | None:intergenic | 30.0% |
!! | AATAGGTTTTGTACAAACAC+AGG | + | chr5.2:62081122-62081141 | MS.gene99724:CDS | 30.0% |
!! | ATAGGTTTTGTACAAACACA+GGG | + | chr5.2:62081123-62081142 | MS.gene99724:CDS | 30.0% |
!! | TTTTTGGTCAAGACAAAATC+TGG | + | chr5.2:62080899-62080918 | MS.gene99724:CDS | 30.0% |
!!! | GTCCTCATAATATTTTGACT+TGG | - | chr5.2:62081030-62081049 | None:intergenic | 30.0% |
!!! | TGGAAACATTTTGGGATAAT+AGG | + | chr5.2:62081105-62081124 | MS.gene99724:CDS | 30.0% |
ACAATGTTTCACAGTGTTGT+TGG | + | chr5.2:62081395-62081414 | MS.gene99724:CDS | 35.0% | |
AGGATTACATGATTGGAAGA+TGG | + | chr5.2:62080445-62080464 | MS.gene99724:CDS | 35.0% | |
AGTGAACGTCAACTATATGA+TGG | + | chr5.2:62080507-62080526 | MS.gene99724:CDS | 35.0% | |
ATCATATAGTTGACGTTCAC+TGG | - | chr5.2:62080508-62080527 | None:intergenic | 35.0% | |
ATGTCACATTAAGGGAAGAT+TGG | + | chr5.2:62081085-62081104 | MS.gene99724:CDS | 35.0% | |
CAACAATCTAACTCCACATA+TGG | - | chr5.2:62080822-62080841 | None:intergenic | 35.0% | |
CATAAATTTAGGGAGACTTG+TGG | + | chr5.2:62081275-62081294 | MS.gene99724:CDS | 35.0% | |
CATATGTGGAGTTAGATTGT+TGG | + | chr5.2:62080820-62080839 | MS.gene99724:CDS | 35.0% | |
GATCTTTCTTACACCATATG+TGG | + | chr5.2:62080806-62080825 | MS.gene99724:CDS | 35.0% | |
GATTTACAACAGTTACCGTA+AGG | + | chr5.2:62080365-62080384 | MS.gene99724:CDS | 35.0% | |
TCATATAGTTGACGTTCACT+GGG | - | chr5.2:62080507-62080526 | None:intergenic | 35.0% | |
TGCACAAATGGTGCTTATAA+TGG | + | chr5.2:62080980-62080999 | MS.gene99724:CDS | 35.0% | |
TGCATACACGATATACTCAT+CGG | - | chr5.2:62081429-62081448 | None:intergenic | 35.0% | |
! | AGGGAAGATTGGAAACATTT+TGG | + | chr5.2:62081096-62081115 | MS.gene99724:CDS | 35.0% |
! | GATGATGTTGATTGTGTTAG+AGG | + | chr5.2:62081491-62081510 | MS.gene99724:CDS | 35.0% |
! | GGGAAGATTGGAAACATTTT+GGG | + | chr5.2:62081097-62081116 | MS.gene99724:CDS | 35.0% |
! | TAGTATTCTAAGAGCAACCT+TGG | - | chr5.2:62080481-62080500 | None:intergenic | 35.0% |
!! | AACTCTATTTTAGAAGCTCG+TGG | + | chr5.2:62081156-62081175 | MS.gene99724:CDS | 35.0% |
!! | GTGTTTTTGATGAGCAACTA+AGG | + | chr5.2:62081315-62081334 | MS.gene99724:CDS | 35.0% |
!! | TTTTAGAAGCTCGTGGAATA+AGG | + | chr5.2:62081163-62081182 | MS.gene99724:CDS | 35.0% |
ACAACAGTTACCGTAAGGAA+TGG | + | chr5.2:62080370-62080389 | MS.gene99724:CDS | 40.0% | |
AGTACATCCAATGACATGTG+AGG | + | chr5.2:62080854-62080873 | MS.gene99724:CDS | 40.0% | |
AGTCTTCCAACCATTCCTTA+CGG | - | chr5.2:62080383-62080402 | None:intergenic | 40.0% | |
CAAACATACGCCATGTTGAA+GGG | - | chr5.2:62080641-62080660 | None:intergenic | 40.0% | |
CATCATCTAGCAGAAACAAC+TGG | - | chr5.2:62081478-62081497 | None:intergenic | 40.0% | |
CTTGTGGAATTCAGTCTACA+TGG | + | chr5.2:62081291-62081310 | MS.gene99724:CDS | 40.0% | |
GGAGCAGTTTGAGAGAAAAT+TGG | + | chr5.2:62081001-62081020 | MS.gene99724:CDS | 40.0% | |
TCAAACATACGCCATGTTGA+AGG | - | chr5.2:62080642-62080661 | None:intergenic | 40.0% | |
ACAGTGTCTCGAACAAGTTG+AGG | - | chr5.2:62080668-62080687 | None:intergenic | 45.0% | |
CAAATCGAAGCCCTTCAACA+TGG | + | chr5.2:62080628-62080647 | MS.gene99724:CDS | 45.0% | |
CAGTTACCGTAAGGAATGGT+TGG | + | chr5.2:62080374-62080393 | MS.gene99724:CDS | 45.0% | |
CCTGCTCCATCAACAACTAA+GGG | - | chr5.2:62080945-62080964 | None:intergenic | 45.0% | |
CTGCTCCATCAACAACTAAG+GGG | - | chr5.2:62080944-62080963 | None:intergenic | 45.0% | |
GAGTTAGATTGTTGGGCTGA+TGG | + | chr5.2:62080828-62080847 | MS.gene99724:CDS | 45.0% | |
TCCTGCTCCATCAACAACTA+AGG | - | chr5.2:62080946-62080965 | None:intergenic | 45.0% | |
TTAGATTGTTGGGCTGATGG+TGG | + | chr5.2:62080831-62080850 | MS.gene99724:CDS | 45.0% | |
CTAGTGGCCTCACATGTCAT+TGG | - | chr5.2:62080864-62080883 | None:intergenic | 50.0% | |
GGGTACCCCTTAGTTGTTGA+TGG | + | chr5.2:62080936-62080955 | MS.gene99724:CDS | 50.0% | |
! | CCCTTAGTTGTTGATGGAGC+AGG | + | chr5.2:62080942-62080961 | MS.gene99724:CDS | 50.0% |
TGACCAAAAAGCCGCGACGA+TGG | - | chr5.2:62080889-62080908 | None:intergenic | 55.0% | |
! | GCTCCATCGTCGCGGCTTTT+TGG | + | chr5.2:62080883-62080902 | MS.gene99724:CDS | 60.0% |
AGCCGCGACGATGGAGCTAG+TGG | - | chr5.2:62080880-62080899 | None:intergenic | 65.0% | |
GGCCACTAGCTCCATCGTCG+CGG | + | chr5.2:62080875-62080894 | MS.gene99724:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 62080330 | 62081544 | 62080330 | ID=MS.gene99724 |
chr5.2 | mRNA | 62080330 | 62081544 | 62080330 | ID=MS.gene99724.t1;Parent=MS.gene99724 |
chr5.2 | exon | 62080330 | 62081544 | 62080330 | ID=MS.gene99724.t1.exon1;Parent=MS.gene99724.t1 |
chr5.2 | CDS | 62080330 | 62081544 | 62080330 | ID=cds.MS.gene99724.t1;Parent=MS.gene99724.t1 |
Gene Sequence |
Protein sequence |