AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99807

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99807.t1 MTR_2g082640 98.696 230 2 1 1 229 1 230 4.39e-168 462
MS.gene99807.t1 MTR_4g081370 78.571 238 41 4 1 229 1 237 2.69e-125 354
MS.gene99807.t1 MTR_4g081370 87.634 186 22 1 45 229 8 193 3.65e-114 325
MS.gene99807.t1 MTR_2g089000 50.195 257 84 8 9 229 12 260 1.26e-72 222
MS.gene99807.t1 MTR_1g043430 52.273 176 80 1 54 229 75 246 6.18e-58 184
MS.gene99807.t1 MTR_4g075480 51.515 99 47 1 69 167 6 103 4.94e-23 94.4
MS.gene99807.t1 MTR_4g075480 51.515 99 47 1 69 167 34 131 1.28e-22 94.0
MS.gene99807.t1 MTR_1g032600 36.806 144 78 3 32 167 36 174 1.99e-19 85.9
MS.gene99807.t1 MTR_4g108360 33.898 118 74 2 51 168 35 148 4.39e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99807.t1 AT5G54680 69.787 235 64 5 1 229 1 234 2.18e-108 311
MS.gene99807.t1 AT1G51070 62.343 239 67 6 1 229 1 226 5.99e-95 277
MS.gene99807.t1 AT1G51070 65.829 199 57 4 36 229 100 292 3.08e-84 252
MS.gene99807.t1 AT4G14410 52.041 196 77 6 37 229 96 277 2.77e-55 178
MS.gene99807.t1 AT4G14410 52.041 196 77 6 37 229 96 277 2.77e-55 178
MS.gene99807.t1 AT4G14410 52.041 196 77 6 37 229 102 283 3.14e-55 178
MS.gene99807.t1 AT3G23210 52.261 199 87 5 35 229 97 291 4.98e-55 178
MS.gene99807.t1 AT3G23210 52.261 199 87 5 35 229 126 320 1.37e-54 177
MS.gene99807.t1 AT3G19860 45.299 117 59 2 66 178 2 117 1.24e-22 93.6
MS.gene99807.t1 AT3G19860 45.299 117 59 2 66 178 33 148 2.25e-22 93.6
MS.gene99807.t1 AT3G19860 45.299 117 59 2 66 178 55 170 2.39e-22 93.6
MS.gene99807.t1 AT4G36060 38.971 136 72 5 69 199 26 155 1.31e-18 82.4
MS.gene99807.t1 AT4G36060 39.706 136 71 5 69 199 26 155 2.32e-18 81.6
MS.gene99807.t1 AT4G36060 38.971 136 72 5 69 199 44 173 4.41e-18 81.3
MS.gene99807.t1 AT4G36060 39.706 136 71 5 69 199 44 173 4.76e-18 81.3
MS.gene99807.t1 AT3G47640 30.128 156 93 4 73 216 31 182 4.93e-12 63.9
MS.gene99807.t1 AT3G47640 30.128 156 93 4 73 216 31 182 4.93e-12 63.9
MS.gene99807.t1 AT3G47640 30.128 156 93 4 73 216 31 182 4.93e-12 63.9

Find 77 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAAGATTAAAGAGTTAA+AGG 0.125284 2.3:-14819547 MS.gene99807:intron
AATTTGAGTCTTTCAACTTT+TGG 0.132451 2.3:+14819580 None:intergenic
TGAAAGGCATTAACTTGTTT+GGG 0.247330 2.3:+14819200 None:intergenic
ATGAAAGGCATTAACTTGTT+TGG 0.257284 2.3:+14819199 None:intergenic
ATTGATAGGTTTGTTGAATT+AGG 0.284956 2.3:-14819696 MS.gene99807:intron
AGGAGGGTGTGTCAAGAAAC+TGG 0.351738 2.3:+14819258 None:intergenic
ATGTGCTCCTTCCAGCTCTA+AGG 0.373277 2.3:-14819853 MS.gene99807:CDS
GCATTAACTTGTTTGGGGCT+TGG 0.383016 2.3:+14819206 None:intergenic
CTCTGCTCCTAGTATTGAAA+TGG 0.383024 2.3:-14820236 MS.gene99807:intron
GCAAATGCAGCAGGGATTGC+AGG 0.388118 2.3:+14819238 None:intergenic
AAGGAGCCATCGACAGAAAC+AGG 0.397378 2.3:+14821071 None:intergenic
CGGTTGCCAATTTAGGCAAC+TGG 0.406655 2.3:+14819097 None:intergenic
CCGAATGGTGACACAGTTGC+GGG 0.410732 2.3:-14819610 MS.gene99807:CDS
AAGTTGAAAGACTCAAATTC+AGG 0.412450 2.3:-14819576 MS.gene99807:CDS
TGTTGAATTAGGCTCCATCT+TGG 0.436518 2.3:-14819685 MS.gene99807:CDS
TAAGGCTGAGAAGGAGAAGT+TGG 0.437128 2.3:-14819311 MS.gene99807:CDS
GAAGGAGAAGTTGGAGCAGC+AGG 0.442475 2.3:-14819302 MS.gene99807:CDS
ATGCCTTTCATGAGTTATCC+AGG 0.449494 2.3:-14819187 MS.gene99807:CDS
AATTGCCACATGGCAACTCC+TGG 0.456430 2.3:+14819169 None:intergenic
CCCGCAACTGTGTCACCATT+CGG 0.471915 2.3:+14819610 None:intergenic
TGATGAGAAGCAGAGGCTTA+AGG 0.477872 2.3:-14819329 MS.gene99807:CDS
TTTCCCCGGAAAACACCAAT+TGG 0.488899 2.3:-14821124 MS.gene99807:CDS
GAGAGAAGTTGCGGAGGGAT+AGG 0.490114 2.3:-14819824 MS.gene99807:CDS
CCTTGATGAGCAAATGCAGC+AGG 0.490383 2.3:+14819229 None:intergenic
AGTTACCTCTTCTTCGAACC+AGG 0.496718 2.3:+14820175 None:intergenic
TTCTTGTTGCAGAGGTAGAT+CGG 0.503971 2.3:-14819880 MS.gene99807:intron
TCCGAATGGTGACACAGTTG+CGG 0.503977 2.3:-14819611 MS.gene99807:CDS
TTAGGCTCCATCTTGGAGCC+TGG 0.505934 2.3:-14819678 MS.gene99807:CDS
TGTGAGGTATCCACGGCGGC+TGG 0.507559 2.3:+14819139 None:intergenic
GAAATTCCTGTTTCTGTCGA+TGG 0.514909 2.3:-14821077 MS.gene99807:CDS
CAGGAATTTCATCAATCAAA+GGG 0.518186 2.3:+14821090 None:intergenic
GCCATTGGAGAGTTGAGGTG+GGG 0.518653 2.3:+14821034 None:intergenic
AGGGTAATCGAAAAGCCAAT+TGG 0.523695 2.3:+14821109 None:intergenic
CGCCATTGGAGAGTTGAGGT+GGG 0.524275 2.3:+14821033 None:intergenic
ACAGGAATTTCATCAATCAA+AGG 0.524589 2.3:+14821089 None:intergenic
CTCTCGACATGCCTTAGAGC+TGG 0.527575 2.3:+14819842 None:intergenic
CAACCCAACTATGGTTTCCC+CGG 0.528497 2.3:-14821138 None:intergenic
GCAGAGGCTTAAGGCTGAGA+AGG 0.531438 2.3:-14819320 MS.gene99807:CDS
CCTGCTGCATTTGCTCATCA+AGG 0.536277 2.3:-14819229 MS.gene99807:CDS
CACCTCAACTCTCCAATGGC+GGG 0.541239 2.3:-14821031 MS.gene99807:intron
GAGGTATCCACGGCGGCTGG+TGG 0.543817 2.3:+14819142 None:intergenic
CAAAATCAGATACCCGCCAT+TGG 0.547933 2.3:+14821019 None:intergenic
GTGTGTCAAGAAACTGGGTT+GGG 0.557971 2.3:+14819264 None:intergenic
GCTCCATCTTGGAGCCTGGA+AGG 0.560039 2.3:-14819674 MS.gene99807:CDS
AAGAACCTGGTTCGAAGAAG+AGG 0.561194 2.3:-14820180 MS.gene99807:intron
CCGCCATTGGAGAGTTGAGG+TGG 0.568621 2.3:+14821032 None:intergenic
GAAAGGCATTAACTTGTTTG+GGG 0.569345 2.3:+14819201 None:intergenic
CCATTGGAGAGTTGAGGTGG+GGG 0.574009 2.3:+14821035 None:intergenic
TGGCCTTCCAGGCTCCAAGA+TGG 0.580720 2.3:+14819671 None:intergenic
AATGGATGATAGCTCTCTAG+TGG 0.589069 2.3:-14820218 MS.gene99807:CDS
CGACATGCCTTAGAGCTGGA+AGG 0.592843 2.3:+14819846 None:intergenic
CAATTTAGGCAACTGGTGGA+CGG 0.594311 2.3:+14819104 None:intergenic
CCACCTCAACTCTCCAATGG+CGG 0.595417 2.3:-14821032 MS.gene99807:CDS
ATTCATGCCACCAGCCGCCG+TGG 0.596384 2.3:-14819149 MS.gene99807:CDS
AGGCATGTCGAGAGAAGTTG+CGG 0.604709 2.3:-14819833 MS.gene99807:CDS
ATGATCTTGTGAGGTATCCA+CGG 0.609314 2.3:+14819132 None:intergenic
ACTCCTGGATAACTCATGAA+AGG 0.613176 2.3:+14819184 None:intergenic
TCTGATGGTATCAAAGAACC+TGG 0.613566 2.3:-14820193 MS.gene99807:CDS
TTGCCAATTTAGGCAACTGG+TGG 0.613733 2.3:+14819100 None:intergenic
TACCCGCCATTGGAGAGTTG+AGG 0.621755 2.3:+14821029 None:intergenic
AACTTCGTGATGAGAAGCAG+AGG 0.627738 2.3:-14819336 MS.gene99807:CDS
GGTGTGTCAAGAAACTGGGT+TGG 0.631646 2.3:+14819263 None:intergenic
AGCTCTCTAGTGGATTCTGA+TGG 0.634077 2.3:-14820208 MS.gene99807:CDS
ATGGCTCCTTCGCCTTCACG+TGG 0.638692 2.3:-14821058 MS.gene99807:CDS
CTTGATGAGCAAATGCAGCA+GGG 0.642514 2.3:+14819230 None:intergenic
AATGCAGCAGGGATTGCAGG+AGG 0.644570 2.3:+14819241 None:intergenic
ATGCAGCAGGGATTGCAGGA+GGG 0.653807 2.3:+14819242 None:intergenic
CATGTCGAGAGAAGTTGCGG+AGG 0.656044 2.3:-14819830 MS.gene99807:CDS
ATGTCGAGAGAAGTTGCGGA+GGG 0.659997 2.3:-14819829 MS.gene99807:CDS
TCTGATTGATGCTGTCCGAA+TGG 0.662212 2.3:-14819625 MS.gene99807:CDS
TGGTGGCATGAATTGCCACA+TGG 0.684045 2.3:+14819159 None:intergenic
GGAGGGTGTGTCAAGAAACT+GGG 0.689856 2.3:+14819259 None:intergenic
ACGGAGTACATGATCTTGTG+AGG 0.697745 2.3:+14819123 None:intergenic
AAGGCCACCTAAAACAGACA+AGG 0.714338 2.3:-14819655 MS.gene99807:CDS
CGAATGGTGACACAGTTGCG+GGG 0.732614 2.3:-14819609 MS.gene99807:CDS
GTTATCCAGGAGTTGCCATG+TGG 0.743485 2.3:-14819174 MS.gene99807:CDS
ATCTTGTGAGGTATCCACGG+CGG 0.745646 2.3:+14819135 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAAATACAAAAATAT+GGG + chr2.3:14820341-14820360 None:intergenic 10.0%
!! AACTTAGTAAATTAATACTA+TGG + chr2.3:14819963-14819982 None:intergenic 15.0%
!! ACTTAGTAAATTAATACTAT+GGG + chr2.3:14819962-14819981 None:intergenic 15.0%
!! CAAGAAAAAATACAAAAATA+TGG + chr2.3:14820342-14820361 None:intergenic 15.0%
!!! AAAGTTTGAATTTTTAAACT+TGG - chr2.3:14819314-14819333 MS.gene99807:CDS 15.0%
!!! AAATGAAATGATTTAGAATA+TGG + chr2.3:14820762-14820781 None:intergenic 15.0%
!!! AAGTTTGAATTTTTAAACTT+GGG - chr2.3:14819315-14819334 MS.gene99807:CDS 15.0%
!!! AGTTAAAAGTATAAAAATGA+AGG + chr2.3:14820786-14820805 None:intergenic 15.0%
!!! GTTAAAAGTATAAAAATGAA+GGG + chr2.3:14820785-14820804 None:intergenic 15.0%
!! GTAATATAATTGAGTCAAAT+TGG - chr2.3:14820198-14820217 MS.gene99807:CDS 20.0%
!! TATCCACAAATTTGAAAAAA+GGG + chr2.3:14819277-14819296 None:intergenic 20.0%
!! TCAATATTCAGTGTTATATA+AGG + chr2.3:14820849-14820868 None:intergenic 20.0%
!! TTATCCACAAATTTGAAAAA+AGG + chr2.3:14819278-14819297 None:intergenic 20.0%
!!! GTAGTTTTTATAAATTGTTG+TGG - chr2.3:14819362-14819381 MS.gene99807:intron 20.0%
! AAACCCTAAATTAAGAAAAG+GGG + chr2.3:14819243-14819262 None:intergenic 25.0%
! AATAATAAAAGGCAAGATAG+TGG + chr2.3:14820456-14820475 None:intergenic 25.0%
! AATTGATATGTGTTAAACAC+TGG - chr2.3:14819689-14819708 MS.gene99807:CDS 25.0%
! AGAGAAGATTAAAGAGTTAA+AGG - chr2.3:14820689-14820708 MS.gene99807:intron 25.0%
! AGATTAAAGAGTTAAAGGTA+AGG - chr2.3:14820694-14820713 MS.gene99807:intron 25.0%
! AGTAAATTAATACTATGGGA+TGG + chr2.3:14819958-14819977 None:intergenic 25.0%
! ATAATAAAAGGCAAGATAGT+GGG + chr2.3:14820455-14820474 None:intergenic 25.0%
! ATCCACAAATTTGAAAAAAG+GGG + chr2.3:14819276-14819295 None:intergenic 25.0%
! CTAATATGATTGACATTGAT+AGG - chr2.3:14820526-14820545 MS.gene99807:intron 25.0%
! CTTGTTTAATGAGAAATGAA+AGG + chr2.3:14820098-14820117 None:intergenic 25.0%
! GAAACCCTAAATTAAGAAAA+GGG + chr2.3:14819244-14819263 None:intergenic 25.0%
! GTAAATTAATACTATGGGAT+GGG + chr2.3:14819957-14819976 None:intergenic 25.0%
! TCTTATAGTATACAAGCAAT+AGG + chr2.3:14820309-14820328 None:intergenic 25.0%
! TGAAACCCTAAATTAAGAAA+AGG + chr2.3:14819245-14819264 None:intergenic 25.0%
!! AAATTGCTCTAAATCAATTG+AGG + chr2.3:14820720-14820739 None:intergenic 25.0%
!! AAATTGTTGTGGTTTTCATT+TGG - chr2.3:14819373-14819392 MS.gene99807:intron 25.0%
!! AATTTGAGTCTTTCAACTTT+TGG + chr2.3:14820659-14820678 None:intergenic 25.0%
!! ATTTGAGTCTTTCAACTTTT+GGG + chr2.3:14820658-14820677 None:intergenic 25.0%
!! GACAAGTGTAATTTTTGAAT+TGG - chr2.3:14819480-14819499 MS.gene99807:intron 25.0%
!! TGTTATGTTTTGTGTACTTA+TGG - chr2.3:14819408-14819427 MS.gene99807:intron 25.0%
!!! AATTTTCTTTGAGAGATAGA+AGG - chr2.3:14820735-14820754 MS.gene99807:intron 25.0%
!!! ATTGATAGGTTTGTTGAATT+AGG - chr2.3:14820540-14820559 MS.gene99807:intron 25.0%
AAACCAAAACCTAAAATCCA+AGG + chr2.3:14819897-14819916 None:intergenic 30.0%
AAACCTAAAATCCAAGGTAA+AGG + chr2.3:14819891-14819910 None:intergenic 30.0%
AAAGGAATTGCAACAGTAAT+TGG + chr2.3:14819873-14819892 None:intergenic 30.0%
AAGAGGAGAGGAATAATAAA+AGG + chr2.3:14820467-14820486 None:intergenic 30.0%
AAGGAATTGCAACAGTAATT+GGG + chr2.3:14819872-14819891 None:intergenic 30.0%
AAGTTGAAAGACTCAAATTC+AGG - chr2.3:14820660-14820679 MS.gene99807:intron 30.0%
ACAGGAATTTCATCAATCAA+AGG + chr2.3:14819150-14819169 None:intergenic 30.0%
CAGGAATTTCATCAATCAAA+GGG + chr2.3:14819149-14819168 None:intergenic 30.0%
CTATCATCCATTTCAATACT+AGG + chr2.3:14820010-14820029 None:intergenic 30.0%
GTCAAATTGGCAATTTAACA+TGG - chr2.3:14820211-14820230 MS.gene99807:CDS 30.0%
TAATAAAAGGCAAGATAGTG+GGG + chr2.3:14820454-14820473 None:intergenic 30.0%
TTGAATTCTATCTACTATGC+AGG - chr2.3:14820865-14820884 MS.gene99807:intron 30.0%
TTTGTAGTAGAACTTGAACT+AGG - chr2.3:14819441-14819460 MS.gene99807:intron 30.0%
! ATTCCTTTACCTTGGATTTT+AGG - chr2.3:14819885-14819904 MS.gene99807:intron 30.0%
! GTTTTGTGTACTTATGGTTA+TGG - chr2.3:14819414-14819433 MS.gene99807:intron 30.0%
! TTGCCCCTTTTCTTAATTTA+GGG - chr2.3:14819237-14819256 MS.gene99807:CDS 30.0%
! TTTGCCCCTTTTCTTAATTT+AGG - chr2.3:14819236-14819255 MS.gene99807:CDS 30.0%
! TTTTTATTGATGCCACTGAA+CGG + chr2.3:14820271-14820290 None:intergenic 30.0%
!! ATGAAAGGCATTAACTTGTT+TGG + chr2.3:14821040-14821059 None:intergenic 30.0%
!! CCTAGTTTTCCATAATACAA+GGG + chr2.3:14819787-14819806 None:intergenic 30.0%
!! TCCTAGTTTTCCATAATACA+AGG + chr2.3:14819788-14819807 None:intergenic 30.0%
!! TGAAAGGCATTAACTTGTTT+GGG + chr2.3:14821039-14821058 None:intergenic 30.0%
!!! TGTATTTTTTCTTGTTGCAG+AGG - chr2.3:14820348-14820367 MS.gene99807:intron 30.0%
!!! TTACCTTGGATTTTAGGTTT+TGG - chr2.3:14819891-14819910 MS.gene99807:intron 30.0%
ACAAGCAATAGGATTTGACA+GGG + chr2.3:14820298-14820317 None:intergenic 35.0%
AGGAATTGCAACAGTAATTG+GGG + chr2.3:14819871-14819890 None:intergenic 35.0%
CCCTTGTATTATGGAAAACT+AGG - chr2.3:14819784-14819803 MS.gene99807:intron 35.0%
TACAAGCAATAGGATTTGAC+AGG + chr2.3:14820299-14820318 None:intergenic 35.0%
TAGTAGAACTTGAACTAGGA+TGG - chr2.3:14819445-14819464 MS.gene99807:intron 35.0%
TCAACTAAGTTACAGCTTTG+AGG - chr2.3:14820176-14820195 MS.gene99807:intron 35.0%
TGAAGATAATTAGCGATAGC+AGG - chr2.3:14820243-14820262 MS.gene99807:intron 35.0%
TGTTCTTGAATCTTCTGTTC+TGG - chr2.3:14819513-14819532 MS.gene99807:intron 35.0%
TTGTGTACTTATGGTTATGG+TGG - chr2.3:14819417-14819436 MS.gene99807:intron 35.0%
! ATCTTCTGTTCTGGATATGT+TGG - chr2.3:14819522-14819541 MS.gene99807:intron 35.0%
! TATTCCTCTCCTCTTTTACT+CGG - chr2.3:14820472-14820491 MS.gene99807:intron 35.0%
!! AAAAGCCAATTGGTGTTTTC+CGG + chr2.3:14819120-14819139 None:intergenic 35.0%
!! GAAAGGCATTAACTTGTTTG+GGG + chr2.3:14821038-14821057 None:intergenic 35.0%
!!! TGCCCCTTTTTTCAAATTTG+TGG - chr2.3:14819271-14819290 MS.gene99807:CDS 35.0%
AACCTGCATCCCTTGTATTA+TGG - chr2.3:14819775-14819794 MS.gene99807:intron 40.0%
AATGGATGATAGCTCTCTAG+TGG - chr2.3:14820018-14820037 MS.gene99807:intron 40.0%
ACATACACGAACACAAGACA+CGG - chr2.3:14819599-14819618 MS.gene99807:CDS 40.0%
ACTCCTGGATAACTCATGAA+AGG + chr2.3:14821055-14821074 None:intergenic 40.0%
AGGGTAATCGAAAAGCCAAT+TGG + chr2.3:14819130-14819149 None:intergenic 40.0%
ATGCCTTTCATGAGTTATCC+AGG - chr2.3:14821049-14821068 MS.gene99807:CDS 40.0%
CTGTTGCAATTCCTTTACCT+TGG - chr2.3:14819877-14819896 MS.gene99807:intron 40.0%
TCTGATGGTATCAAAGAACC+TGG - chr2.3:14820043-14820062 MS.gene99807:intron 40.0%
TGGGTGTAGACTGTGTATTT+GGG - chr2.3:14820495-14820514 MS.gene99807:intron 40.0%
TGTTGAATTAGGCTCCATCT+TGG - chr2.3:14820551-14820570 MS.gene99807:intron 40.0%
TTCCATAATACAAGGGATGC+AGG + chr2.3:14819780-14819799 None:intergenic 40.0%
TTCTTGTTGCAGAGGTAGAT+CGG - chr2.3:14820356-14820375 MS.gene99807:intron 40.0%
! ATGATCTTGTGAGGTATCCA+CGG + chr2.3:14821107-14821126 None:intergenic 40.0%
! ATTGCTGCCTTGTCTGTTTT+AGG + chr2.3:14820591-14820610 None:intergenic 40.0%
! CTCTGCTCCTAGTATTGAAA+TGG - chr2.3:14820000-14820019 MS.gene99807:intron 40.0%
! TCTGTTCTGGATATGTTGGT+GGG - chr2.3:14819526-14819545 MS.gene99807:intron 40.0%
! TTCTGTTCTGGATATGTTGG+TGG - chr2.3:14819525-14819544 MS.gene99807:intron 40.0%
!! AAAGCCAATTGGTGTTTTCC+GGG + chr2.3:14819119-14819138 None:intergenic 40.0%
!! GAAATTCCTGTTTCTGTCGA+TGG - chr2.3:14819159-14819178 MS.gene99807:CDS 40.0%
AACTTCGTGATGAGAAGCAG+AGG - chr2.3:14820900-14820919 MS.gene99807:intron 45.0%
AAGGCCACCTAAAACAGACA+AGG - chr2.3:14820581-14820600 MS.gene99807:intron 45.0%
ACACAGCATGTGTCAGTGTT+GGG - chr2.3:14819666-14819685 MS.gene99807:CDS 45.0%
ACGGAGTACATGATCTTGTG+AGG + chr2.3:14821116-14821135 None:intergenic 45.0%
AGTTACCTCTTCTTCGAACC+AGG + chr2.3:14820064-14820083 None:intergenic 45.0%
CAAAATCAGATACCCGCCAT+TGG + chr2.3:14819220-14819239 None:intergenic 45.0%
CAATTTGCACGAGCAGCTTA+AGG + chr2.3:14819753-14819772 None:intergenic 45.0%
CTTGATGAGCAAATGCAGCA+GGG + chr2.3:14821009-14821028 None:intergenic 45.0%
GGGTGTAGACTGTGTATTTG+GGG - chr2.3:14820496-14820515 MS.gene99807:intron 45.0%
GTGGGTGTAGACTGTGTATT+TGG - chr2.3:14820494-14820513 MS.gene99807:intron 45.0%
GTGTGTCAAGAAACTGGGTT+GGG + chr2.3:14820975-14820994 None:intergenic 45.0%
TAAGGCTGAGAAGGAGAAGT+TGG - chr2.3:14820925-14820944 MS.gene99807:intron 45.0%
TCTGATTGATGCTGTCCGAA+TGG - chr2.3:14820611-14820630 MS.gene99807:intron 45.0%
TGATGAGAAGCAGAGGCTTA+AGG - chr2.3:14820907-14820926 MS.gene99807:intron 45.0%
TTTCCCCGGAAAACACCAAT+TGG - chr2.3:14819112-14819131 MS.gene99807:CDS 45.0%
! AAGAACCTGGTTCGAAGAAG+AGG - chr2.3:14820056-14820075 MS.gene99807:intron 45.0%
! CTGAAGTGTCAGTGCTACAT+AGG - chr2.3:14819725-14819744 MS.gene99807:intron 45.0%
!! AAGCCAATTGGTGTTTTCCG+GGG + chr2.3:14819118-14819137 None:intergenic 45.0%
!! AGCTCTCTAGTGGATTCTGA+TGG - chr2.3:14820028-14820047 MS.gene99807:intron 45.0%
!! GCATTAACTTGTTTGGGGCT+TGG + chr2.3:14821033-14821052 None:intergenic 45.0%
AAGGAGCCATCGACAGAAAC+AGG + chr2.3:14819168-14819187 None:intergenic 50.0%
AATTGCCACATGGCAACTCC+TGG + chr2.3:14821070-14821089 None:intergenic 50.0%
AGGCATGTCGAGAGAAGTTG+CGG - chr2.3:14820403-14820422 MS.gene99807:intron 50.0%
ATGTCGAGAGAAGTTGCGGA+GGG - chr2.3:14820407-14820426 MS.gene99807:intron 50.0%
ATGTGCTCCTTCCAGCTCTA+AGG - chr2.3:14820383-14820402 MS.gene99807:intron 50.0%
CCTGCTGCATTTGCTCATCA+AGG - chr2.3:14821007-14821026 MS.gene99807:intron 50.0%
CCTTGATGAGCAAATGCAGC+AGG + chr2.3:14821010-14821029 None:intergenic 50.0%
CTACACCCACCGAGTAAAAG+AGG + chr2.3:14820484-14820503 None:intergenic 50.0%
GACACAGCATGTGTCAGTGT+TGG - chr2.3:14819665-14819684 MS.gene99807:CDS 50.0%
GGTGTGTCAAGAAACTGGGT+TGG + chr2.3:14820976-14820995 None:intergenic 50.0%
GTTATCCAGGAGTTGCCATG+TGG - chr2.3:14821062-14821081 MS.gene99807:CDS 50.0%
TCCGAATGGTGACACAGTTG+CGG - chr2.3:14820625-14820644 MS.gene99807:intron 50.0%
TGGTGGCATGAATTGCCACA+TGG + chr2.3:14821080-14821099 None:intergenic 50.0%
! AGGAGGGTGTGTCAAGAAAC+TGG + chr2.3:14820981-14821000 None:intergenic 50.0%
! ATCTTGTGAGGTATCCACGG+CGG + chr2.3:14821104-14821123 None:intergenic 50.0%
! CCTCTCCTCTTTTACTCGGT+GGG - chr2.3:14820476-14820495 MS.gene99807:intron 50.0%
! GGAGGGTGTGTCAAGAAACT+GGG + chr2.3:14820980-14820999 None:intergenic 50.0%
! TCCTCTCCTCTTTTACTCGG+TGG - chr2.3:14820475-14820494 MS.gene99807:intron 50.0%
!! GCTGCCTTGTCTGTTTTAGG+TGG + chr2.3:14820588-14820607 None:intergenic 50.0%
!! TCTGTTTTAGGTGGCCTTCC+AGG + chr2.3:14820579-14820598 None:intergenic 50.0%
AATGCAGCAGGGATTGCAGG+AGG + chr2.3:14820998-14821017 None:intergenic 55.0%
ATGCAGCAGGGATTGCAGGA+GGG + chr2.3:14820997-14821016 None:intergenic 55.0%
CACCTCAACTCTCCAATGGC+GGG - chr2.3:14819205-14819224 MS.gene99807:CDS 55.0%
CATGTCGAGAGAAGTTGCGG+AGG - chr2.3:14820406-14820425 MS.gene99807:intron 55.0%
CCACCTCAACTCTCCAATGG+CGG - chr2.3:14819204-14819223 MS.gene99807:CDS 55.0%
CCATTGGAGAGTTGAGGTGG+GGG + chr2.3:14819204-14819223 None:intergenic 55.0%
CCCACCGAGTAAAAGAGGAG+AGG + chr2.3:14820479-14820498 None:intergenic 55.0%
CCCGCAACTGTGTCACCATT+CGG + chr2.3:14820629-14820648 None:intergenic 55.0%
CCGAATGGTGACACAGTTGC+GGG - chr2.3:14820626-14820645 MS.gene99807:intron 55.0%
CGAATGGTGACACAGTTGCG+GGG - chr2.3:14820627-14820646 MS.gene99807:intron 55.0%
CGACATGCCTTAGAGCTGGA+AGG + chr2.3:14820393-14820412 None:intergenic 55.0%
CGCCATTGGAGAGTTGAGGT+GGG + chr2.3:14819206-14819225 None:intergenic 55.0%
CTCTCGACATGCCTTAGAGC+TGG + chr2.3:14820397-14820416 None:intergenic 55.0%
GAAGGAGAAGTTGGAGCAGC+AGG - chr2.3:14820934-14820953 MS.gene99807:intron 55.0%
GAGAGAAGTTGCGGAGGGAT+AGG - chr2.3:14820412-14820431 MS.gene99807:intron 55.0%
GCAAATGCAGCAGGGATTGC+AGG + chr2.3:14821001-14821020 None:intergenic 55.0%
GCAGAGGCTTAAGGCTGAGA+AGG - chr2.3:14820916-14820935 MS.gene99807:intron 55.0%
GCCATTGGAGAGTTGAGGTG+GGG + chr2.3:14819205-14819224 None:intergenic 55.0%
TACCCGCCATTGGAGAGTTG+AGG + chr2.3:14819210-14819229 None:intergenic 55.0%
TTAGGCTCCATCTTGGAGCC+TGG - chr2.3:14820558-14820577 MS.gene99807:intron 55.0%
ATGGCTCCTTCGCCTTCACG+TGG - chr2.3:14819178-14819197 MS.gene99807:CDS 60.0%
CCCCCACCTCAACTCTCCAA+TGG - chr2.3:14819201-14819220 MS.gene99807:CDS 60.0%
CCGCCATTGGAGAGTTGAGG+TGG + chr2.3:14819207-14819226 None:intergenic 60.0%
CGATAGCAGGCTCCGTTCAG+TGG - chr2.3:14820256-14820275 MS.gene99807:intron 60.0%
GCTCCATCTTGGAGCCTGGA+AGG - chr2.3:14820562-14820581 MS.gene99807:intron 60.0%
TGGCCTTCCAGGCTCCAAGA+TGG + chr2.3:14820568-14820587 None:intergenic 60.0%
ATTCATGCCACCAGCCGCCG+TGG - chr2.3:14821087-14821106 MS.gene99807:CDS 65.0%
TTGAGGTGGGGGCCACGTGA+AGG + chr2.3:14819193-14819212 None:intergenic 65.0%
! TGTGAGGTATCCACGGCGGC+TGG + chr2.3:14821100-14821119 None:intergenic 65.0%
TGGGGGCCACGTGAAGGCGA+AGG + chr2.3:14819187-14819206 None:intergenic 70.0%
! GAGGTATCCACGGCGGCTGG+TGG + chr2.3:14821097-14821116 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 14819108 14821150 14819108 ID=MS.gene99807
chr2.3 mRNA 14819108 14821150 14819108 ID=MS.gene99807.t1;Parent=MS.gene99807
chr2.3 exon 14821032 14821150 14821032 ID=MS.gene99807.t1.exon1;Parent=MS.gene99807.t1
chr2.3 CDS 14821032 14821150 14821032 ID=cds.MS.gene99807.t1;Parent=MS.gene99807.t1
chr2.3 exon 14820181 14820246 14820181 ID=MS.gene99807.t1.exon2;Parent=MS.gene99807.t1
chr2.3 CDS 14820181 14820246 14820181 ID=cds.MS.gene99807.t1;Parent=MS.gene99807.t1
chr2.3 exon 14819813 14819890 14819813 ID=MS.gene99807.t1.exon3;Parent=MS.gene99807.t1
chr2.3 CDS 14819813 14819890 14819813 ID=cds.MS.gene99807.t1;Parent=MS.gene99807.t1
chr2.3 exon 14819548 14819710 14819548 ID=MS.gene99807.t1.exon4;Parent=MS.gene99807.t1
chr2.3 CDS 14819548 14819710 14819548 ID=cds.MS.gene99807.t1;Parent=MS.gene99807.t1
chr2.3 exon 14819108 14819371 14819108 ID=MS.gene99807.t1.exon5;Parent=MS.gene99807.t1
chr2.3 CDS 14819108 14819371 14819108 ID=cds.MS.gene99807.t1;Parent=MS.gene99807.t1
Gene Sequence

>MS.gene99807

ATGGTTTCCCCGGAAAACACCAATTGGCTTTTCGATTACCCTTTGATTGATGAAATTCCTGTTTCTGTCGATGGCTCCTTCGCCTTCACGTGGCCCCCACCTCAACTCTCCAATGGCGGGTATCTGATTTTGCCCCTTTTCTTAATTTAGGGTTTCAAGTTTTTGCCCCTTTTTTCAAATTTGTGGATAATTGTTGTGCTTTTTGTAAAGTTTGAATTTTTAAACTTGGGTTTGTAAAATTTTGTTGTAAAATTGTAGTTTTTATAAATTGTTGTGGTTTTCATTTGGTCTTCAGTTATTTGTTATGTTTTGTGTACTTATGGTTATGGTGGATTTGTAGTAGAACTTGAACTAGGATGGAAGTACAAGTGTGACAAGTGTAATTTTTGAATTGGTTAATGATGATGTTCTTGAATCTTCTGTTCTGGATATGTTGGTGGGTTTAATTGTCTGTGCTGTCTTGTTTCAATAGCTGTTGATGAAGCATCGACACATACACGAACACAAGACACGGCACTGACACTAGTAAACAATTTGAGAAAAATGAATAATTAAATGACACAGCATGTGTCAGTGTTGGGAATTGATATGTGTTAAACACTGGAAACACTTTCAATCTGAAGTGTCAGTGCTACATAGGTGCCTTAAGCTGCTCGTGCAAATTGACAACCTGCATCCCTTGTATTATGGAAAACTAGGAACTAATTGTGACTGATGCAATCGTAGTTTAATTACAACAGCGATGATGTAGTTGTAGAGACCCCAATTACTGTTGCAATTCCTTTACCTTGGATTTTAGGTTTTGGTTTGAGAATTAGAATTTTTTTCTTCTATAAATACATATCTCCCATCCCATAGTATTAATTTACTAAGTTATGCTTCTGTGTTATCTCTCTGCTCCTAGTATTGAAATGGATGATAGCTCTCTAGTGGATTCTGATGGTATCAAAGAACCTGGTTCGAAGAAGAGGTAACTATTTTGTTTTACCTTTCATTTCTCATTAAACAAGTTAGTCAATGTTAATAAAATCAACACATGATCGACATGAGTAGTGTAGCGACTTAGCGTCAACTAAGTTACAGCTTTGAGGTAATATAATTGAGTCAAATTGGCAATTTAACATGGTTTCTAAAGTGAAGATAATTAGCGATAGCAGGCTCCGTTCAGTGGCATCAATAAAAAAATTCCCTGTCAAATCCTATTGCTTGTATACTATAAGAAAAAGTTATCCCATATTTTTGTATTTTTTCTTGTTGCAGAGGTAGATCGGATTCATGTGCTCCTTCCAGCTCTAAGGCATGTCGAGAGAAGTTGCGGAGGGATAGGCTGAACGACAAGTAATCCCCACTATCTTGCCTTTTATTATTCCTCTCCTCTTTTACTCGGTGGGTGTAGACTGTGTATTTGGGGTATGCAACTAATATGATTGACATTGATAGGTTTGTTGAATTAGGCTCCATCTTGGAGCCTGGAAGGCCACCTAAAACAGACAAGGCAGCAATTCTGATTGATGCTGTCCGAATGGTGACACAGTTGCGGGGTGAAGCCCAAAAGTTGAAAGACTCAAATTCAGGTCTTCAAGAGAAGATTAAAGAGTTAAAGGTAAGGCCTCAATTGATTTAGAGCAATTTTCTTTGAGAGATAGAAGGTCCATATTCTAAATCATTTCATTTCCCTTCATTTTTATACTTTTAACTGTAGTACTTTGTCATATCAGTGACTTCAATATCTGATTGACCTTATATAACACTGAATATTGAATTCTATCTACTATGCAGGTTGAGAAGAATGAACTTCGTGATGAGAAGCAGAGGCTTAAGGCTGAGAAGGAGAAGTTGGAGCAGCAGGTGAAATCAATGAACACCCAACCCAGTTTCTTGACACACCCTCCTGCAATCCCTGCTGCATTTGCTCATCAAGGCCAAGCCCCAAACAAGTTAATGCCTTTCATGAGTTATCCAGGAGTTGCCATGTGGCAATTCATGCCACCAGCCGCCGTGGATACCTCACAAGATCATGTACTCCGTCCACCAGTTGCCTAA
Protein sequence

>MS.gene99807.t1

MVSPENTNWLFDYPLIDEIPVSVDGSFAFTWPPPQLSNGGIEMDDSSLVDSDGIKEPGSKKRGRSDSCAPSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQVKSMNTQPSFLTHPPAIPAAFAHQGQAPNKLMPFMSYPGVAMWQFMPPAAVDTSQDHVLRPPVA