AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049411


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049411.t1 MTR_3g093800 99.729 369 1 0 1 369 1 369 0.0 757
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049411.t1 AT2G38560 53.368 386 149 11 6 369 2 378 3.12e-118 347
MS.gene049411.t1 AT2G42725 48.031 127 65 1 189 314 104 230 7.35e-32 120
MS.gene049411.t1 AT4G18720 51.724 116 55 1 184 298 100 215 1.10e-29 115
MS.gene049411.t1 AT5G42325 40.625 128 58 3 189 314 104 215 2.76e-19 86.3

Find 88 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGAGTTTGCATTTGGTAAT+AGG 0.248412 3.1:+75050336 None:intergenic
GTCCTTAATGTTTAATCTTA+AGG 0.250681 3.1:-75050575 MS.gene049411:CDS
ATTCAGCGCGAGACAAAATA+AGG 0.257557 3.1:-75050759 MS.gene049411:CDS
ATCCTTAAGATTAAACATTA+AGG 0.282366 3.1:+75050573 None:intergenic
ATCAGAAGAACCCTGATTTC+CGG 0.285749 3.1:-75050552 MS.gene049411:CDS
AGGACCTATACTTGACCTTT+TGG 0.308451 3.1:+75050593 None:intergenic
AGTCCGTATTATTTGAAAAC+TGG 0.312826 3.1:-75050633 MS.gene049411:CDS
CTGTTGACTTAATTGCGATA+TGG 0.314443 3.1:-75051125 MS.gene049411:CDS
GCCAAGGTGGAGAAAGTTAA+TGG 0.315639 3.1:-75050964 MS.gene049411:CDS
AATTGATCAGTAGTAGCTTT+TGG 0.339749 3.1:+75050391 None:intergenic
GAGGCAACGGGTTTCTTCGC+TGG 0.347716 3.1:+75052835 None:intergenic
ACTGTCACTGCCACACGAAT+AGG 0.349730 3.1:+75050658 None:intergenic
CAGCACTGCGAGTTTGCATT+TGG 0.373188 3.1:+75050329 None:intergenic
AGCATCCCAGGGAGAACATT+CGG 0.381324 3.1:-75051155 MS.gene049411:CDS
CTCCTTCGCTTTGATGTTCG+AGG 0.381420 3.1:+75050864 None:intergenic
CGTCATGAGCTCAGCAGAAA+TGG 0.387279 3.1:-75050488 MS.gene049411:CDS
GAACGGGGCCTCTGATTCTA+AGG 0.389336 3.1:-75051067 MS.gene049411:CDS
ATCATAGTCTTCAGCTTTGG+TGG 0.390447 3.1:+75050793 None:intergenic
CTTTGGTGGAGCAGCAGCGC+TGG 0.398518 3.1:+75050807 None:intergenic
GAAAACTGGGGTCCTTCAAA+TGG 0.424609 3.1:-75050619 MS.gene049411:CDS
TTGATCATAGTCTTCAGCTT+TGG 0.429713 3.1:+75050790 None:intergenic
TACTGTTGAGCCACAGCGGC+TGG 0.438165 3.1:-75050512 MS.gene049411:CDS
TTCAAGCGCATCGAGGCAAC+GGG 0.440343 3.1:+75052823 None:intergenic
GCATCCCAGGGAGAACATTC+GGG 0.444394 3.1:-75051154 MS.gene049411:CDS
CTCATGACGGCCAGCCGCTG+TGG 0.450612 3.1:+75050502 None:intergenic
CTGTCACTGCCACACGAATA+GGG 0.453244 3.1:+75050659 None:intergenic
AGGCAACGGGTTTCTTCGCT+GGG 0.460026 3.1:+75052836 None:intergenic
TCCTTCAAATGGAGCCCAAA+AGG 0.467781 3.1:-75050608 MS.gene049411:CDS
AAACTCTCACCAAGCATCCC+AGG 0.468100 3.1:-75051167 MS.gene049411:CDS
GTGGTTGGGTTCGATGGAGA+AGG 0.470982 3.1:-75052936 None:intergenic
GGTTCATCAAAGCTGAGCTC+TGG 0.479292 3.1:-75050937 MS.gene049411:CDS
TTCTTCGCTGGGACTATCAT+CGG 0.481323 3.1:+75052847 None:intergenic
AATGTTCTCCCTGGGATGCT+TGG 0.486291 3.1:+75051158 None:intergenic
CAAGTGACATAGGTTGTCAT+AGG 0.486857 3.1:+75050301 None:intergenic
CCCATTAACTTTCTCCACCT+TGG 0.490756 3.1:+75050963 None:intergenic
CCTTTCTCAACCTTCACTGA+AGG 0.497037 3.1:+75050994 None:intergenic
ATGGAAAGACGTAATTATCA+AGG 0.497212 3.1:-75051106 MS.gene049411:CDS
GTCCGTATTATTTGAAAACT+GGG 0.498242 3.1:-75050632 MS.gene049411:CDS
GTTCAAGCGCATCGAGGCAA+CGG 0.502578 3.1:+75052822 None:intergenic
CCAAGGTGGAGAAAGTTAAT+GGG 0.509185 3.1:-75050963 MS.gene049411:CDS
GGGACTATCATCGGTGGAGG+TGG 0.510748 3.1:+75052856 None:intergenic
AAAAGCCCGAATGTTCTCCC+TGG 0.523075 3.1:+75051149 None:intergenic
GCAGTTAACACAAGTGACAT+AGG 0.530050 3.1:+75050291 None:intergenic
CTAAGGTTGAGTCAACGAAT+GGG 0.530166 3.1:-75051050 MS.gene049411:CDS
CCTTCAGTGAAGGTTGAGAA+AGG 0.536034 3.1:-75050994 MS.gene049411:CDS
GAAGGAGAAAGAGAAAGAGT+TGG 0.537798 3.1:-75052918 MS.gene049411:CDS
AGCATCCGCCGCTTTCTTCG+CGG 0.541475 3.1:+75052880 None:intergenic
AGAGGCAGATGAAGATATGA+TGG 0.547455 3.1:-75050701 MS.gene049411:CDS
GTGGAGAAAGTTAATGGGAA+TGG 0.557971 3.1:-75050958 MS.gene049411:CDS
TCTCCGAGATGCTTTAGCTA+AGG 0.559780 3.1:-75050731 MS.gene049411:CDS
TTCAGCGCGAGACAAAATAA+GGG 0.562584 3.1:-75050758 MS.gene049411:CDS
GCTGAGCTCTGGAAATGTAA+AGG 0.564072 3.1:-75050926 MS.gene049411:CDS
GCAAAAGAGTCCTTCAGTGA+AGG 0.568044 3.1:-75051004 MS.gene049411:CDS
TCTAAGGTTGAGTCAACGAA+TGG 0.570762 3.1:-75051051 MS.gene049411:CDS
AGTTTGCATTTGGTAATAGG+TGG 0.578245 3.1:+75050339 None:intergenic
AAAGCCCGAATGTTCTCCCT+GGG 0.578463 3.1:+75051150 None:intergenic
CTGATCAATTTAAGTGTGGT+CGG 0.587454 3.1:-75050378 MS.gene049411:CDS
TATTCGTGTGGCAGTGACAG+TGG 0.587816 3.1:-75050656 MS.gene049411:CDS
GCTTTGTTCGACTGTGAGCG+TGG 0.588912 3.1:-75050421 MS.gene049411:CDS
CAGAAATGGCTAGTGAGCAA+AGG 0.590372 3.1:-75050474 MS.gene049411:CDS
AGACCTTAGCTAAAGCATCT+CGG 0.591289 3.1:+75050728 None:intergenic
AATGGGGAGAGAGCTAAAGC+TGG 0.591506 3.1:-75051033 MS.gene049411:CDS
GTGTTAACTGCAACAACCGT+TGG 0.591905 3.1:-75050279 MS.gene049411:CDS
AAATGTAAAGGCACAAAATG+TGG 0.596450 3.1:-75050914 MS.gene049411:CDS
TTCGCTGGGACTATCATCGG+TGG 0.598548 3.1:+75052850 None:intergenic
GAGCCCAAAAGGTCAAGTAT+AGG 0.599758 3.1:-75050597 MS.gene049411:CDS
AACTCTCACCAAGCATCCCA+GGG 0.605206 3.1:-75051166 MS.gene049411:CDS
CAAAATTCTCGTCAATACCC+AGG 0.608507 3.1:-75052774 MS.gene049411:intron
GAAAGGAGAAAGTGCCAAGG+TGG 0.613295 3.1:-75050977 MS.gene049411:CDS
GCTGGGACTATCATCGGTGG+AGG 0.613512 3.1:+75052853 None:intergenic
ATGGGGAGAGAGCTAAAGCT+GGG 0.620446 3.1:-75051032 MS.gene049411:CDS
AGTGTGGTCGGTGTGGACAA+AGG 0.621667 3.1:-75050366 MS.gene049411:CDS
TTTAGCTAAGGTCTTTGAAG+AGG 0.626494 3.1:-75050719 MS.gene049411:CDS
TGACTCAACCTTAGAATCAG+AGG 0.626857 3.1:+75051059 None:intergenic
CAATTTAAGTGTGGTCGGTG+TGG 0.627337 3.1:-75050373 MS.gene049411:CDS
TACCTCGAACATCAAAGCGA+AGG 0.634021 3.1:-75050866 MS.gene049411:CDS
CTCGAACATCAAAGCGAAGG+AGG 0.641252 3.1:-75050863 MS.gene049411:CDS
ACTACTGATCAATTTAAGTG+TGG 0.648979 3.1:-75050382 MS.gene049411:CDS
GTACGAAGCCGCGAAGAAAG+CGG 0.650598 3.1:-75052888 MS.gene049411:CDS
TGAGAAAGGAGAAAGTGCCA+AGG 0.657225 3.1:-75050980 MS.gene049411:CDS
AGTACTAACAAAACTTCCAA+CGG 0.659265 3.1:+75050263 None:intergenic
TAAGGTTGAGTCAACGAATG+GGG 0.661593 3.1:-75051049 MS.gene049411:CDS
CATTTCTGCTGAGCTCATGA+CGG 0.685355 3.1:+75050489 None:intergenic
CGAAGCCGCGAAGAAAGCGG+CGG 0.685814 3.1:-75052885 MS.gene049411:CDS
TCCGTATTATTTGAAAACTG+GGG 0.694223 3.1:-75050631 MS.gene049411:CDS
TGCATGTGACCCTATTCGTG+TGG 0.704457 3.1:-75050668 MS.gene049411:CDS
TGAGCTGTTCAAGCGCATCG+AGG 0.741948 3.1:+75052816 None:intergenic
TTGGTACTGTTGAGCCACAG+CGG 0.773544 3.1:-75050516 MS.gene049411:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAATACAAGATTT+CGG + chr3.1:75051046-75051065 None:intergenic 10.0%
!! AAAAATATTGCTATGAAATA+TGG + chr3.1:75051432-75051451 None:intergenic 15.0%
!! AAAAGAAATAGAGATAGTTA+AGG - chr3.1:75051883-75051902 MS.gene049411:intron 20.0%
!! AAACAAGTAAAAATAAGAAC+GGG - chr3.1:75052107-75052126 MS.gene049411:intron 20.0%
!! AAAGAAATAGAGATAGTTAA+GGG - chr3.1:75051884-75051903 MS.gene049411:intron 20.0%
!! AAATCAGAAAAAACTATAAC+GGG + chr3.1:75051278-75051297 None:intergenic 20.0%
!! AACAAACTATTTATTAAGCA+AGG + chr3.1:75051653-75051672 None:intergenic 20.0%
!! AATACTAGTTCATAGTTTAT+TGG - chr3.1:75051482-75051501 MS.gene049411:intron 20.0%
!! ATAGAAAAAACTGTAGTATT+TGG - chr3.1:75051851-75051870 MS.gene049411:intron 20.0%
!! ATCCTTAAGATTAAACATTA+AGG + chr3.1:75052620-75052639 None:intergenic 20.0%
!! ATTTGTTTAGAAATATCTGT+AGG + chr3.1:75051394-75051413 None:intergenic 20.0%
!! CAAATCAGAAAAAACTATAA+CGG + chr3.1:75051279-75051298 None:intergenic 20.0%
!! GAAACAAGTAAAAATAAGAA+CGG - chr3.1:75052106-75052125 MS.gene049411:intron 20.0%
!! GAATAGAAAAATAATAACCT+GGG + chr3.1:75050436-75050455 None:intergenic 20.0%
!! GAGTTATAGATTTGTAAATT+TGG - chr3.1:75050667-75050686 MS.gene049411:CDS 20.0%
!! TGAATAGAAAAATAATAACC+TGG + chr3.1:75050437-75050456 None:intergenic 20.0%
!! TTTGTTTAGAAATATCTGTA+GGG + chr3.1:75051393-75051412 None:intergenic 20.0%
!!! GTTTTGTTTTTGGTTAAATT+GGG - chr3.1:75050714-75050733 MS.gene049411:CDS 20.0%
!!! TCAAATCTTTACTTTTTTCA+TGG - chr3.1:75051922-75051941 MS.gene049411:intron 20.0%
!!! TCAATTTTAGGTTTTGTTTT+TGG - chr3.1:75050704-75050723 MS.gene049411:CDS 20.0%
!!! TTTCTGATTTGAATAGATTT+TGG - chr3.1:75051288-75051307 MS.gene049411:intron 20.0%
! AACAAGTAAAAATAAGAACG+GGG - chr3.1:75052108-75052127 MS.gene049411:intron 25.0%
! AACTATGAACTAGTATTTCA+CGG + chr3.1:75051479-75051498 None:intergenic 25.0%
! CAACTGGCTAATTTAAATTA+CGG + chr3.1:75050863-75050882 None:intergenic 25.0%
! GTCCTTAATGTTTAATCTTA+AGG - chr3.1:75052615-75052634 MS.gene049411:intron 25.0%
! TTTGCATGTTATAGTTGTTA+GGG - chr3.1:75050546-75050565 MS.gene049411:CDS 25.0%
!! ATTTTCTGATGTAATCTTTC+AGG - chr3.1:75051985-75052004 MS.gene049411:intron 25.0%
!! GTAAAGATTTGAGATCAATT+TGG + chr3.1:75051914-75051933 None:intergenic 25.0%
!! TCTATTCACATTGCAAATTT+TGG - chr3.1:75050449-75050468 MS.gene049411:CDS 25.0%
!! TTTTGCATGTTATAGTTGTT+AGG - chr3.1:75050545-75050564 MS.gene049411:CDS 25.0%
!!! ACAGTTTTTTCTATCTAGTT+TGG + chr3.1:75051845-75051864 None:intergenic 25.0%
!!! GGTTTTGTTTTTGGTTAAAT+TGG - chr3.1:75050713-75050732 MS.gene049411:CDS 25.0%
!!! TTTTTAATTCTTTGATGACG+TGG - chr3.1:75051060-75051079 MS.gene049411:CDS 25.0%
AATGAAACCAATCCTAACTT+TGG + chr3.1:75051213-75051232 None:intergenic 30.0%
AATTAAATTAGCACATTGCG+TGG - chr3.1:75050760-75050779 MS.gene049411:CDS 30.0%
ACCACAAATAACAATATCCT+TGG + chr3.1:75051162-75051181 None:intergenic 30.0%
ACTACTGATCAATTTAAGTG+TGG - chr3.1:75052808-75052827 MS.gene049411:CDS 30.0%
ACTATGAACTAGTATTTCAC+GGG + chr3.1:75051478-75051497 None:intergenic 30.0%
AGTCCGTATTATTTGAAAAC+TGG - chr3.1:75052557-75052576 MS.gene049411:intron 30.0%
ATGAAAATCGTAACAAGTAC+AGG + chr3.1:75051953-75051972 None:intergenic 30.0%
ATGGAAAGACGTAATTATCA+AGG - chr3.1:75052084-75052103 MS.gene049411:intron 30.0%
ATTTAAATTAGCCAGTTGCA+TGG - chr3.1:75050865-75050884 MS.gene049411:CDS 30.0%
GAAAATCCAAAACATATACC+CGG + chr3.1:75050923-75050942 None:intergenic 30.0%
GAACTTATTGAAACTGGAAT+GGG - chr3.1:75051331-75051350 MS.gene049411:intron 30.0%
GGAAATCAACTCTTAATGTT+TGG - chr3.1:75051309-75051328 MS.gene049411:intron 30.0%
GTCCGTATTATTTGAAAACT+GGG - chr3.1:75052558-75052577 MS.gene049411:intron 30.0%
GTGAGTATGATTGTAAGAAA+AGG + chr3.1:75051596-75051615 None:intergenic 30.0%
TATCATTGTTGTCGTTATCT+TGG - chr3.1:75051127-75051146 MS.gene049411:CDS 30.0%
TATCTTGGAATTTATGACCA+AGG - chr3.1:75051142-75051161 MS.gene049411:CDS 30.0%
TATTGCTATGAAATATGGAG+AGG + chr3.1:75051427-75051446 None:intergenic 30.0%
TATTGTATCGTAATTGAGTC+CGG - chr3.1:75050901-75050920 MS.gene049411:CDS 30.0%
TCCGTATTATTTGAAAACTG+GGG - chr3.1:75052559-75052578 MS.gene049411:intron 30.0%
TTAACATCAACAGAAACTCA+GGG + chr3.1:75050741-75050760 None:intergenic 30.0%
TTTAACATCAACAGAAACTC+AGG + chr3.1:75050742-75050761 None:intergenic 30.0%
! AAATGTAAAGGCACAAAATG+TGG - chr3.1:75052276-75052295 MS.gene049411:intron 30.0%
! AACTGTAGTATTTGGAATTC+AGG - chr3.1:75051859-75051878 MS.gene049411:intron 30.0%
! AATTGATCAGTAGTAGCTTT+TGG + chr3.1:75052802-75052821 None:intergenic 30.0%
! ACCCCAGTTTTCAAATAATA+CGG + chr3.1:75052563-75052582 None:intergenic 30.0%
! ACGAGAATTTTGTAATTGAC+CGG + chr3.1:75050408-75050427 None:intergenic 30.0%
! ACTGTAGTATTTGGAATTCA+GGG - chr3.1:75051860-75051879 MS.gene049411:intron 30.0%
! ATAGTTTATTGGTCTGATTG+TGG - chr3.1:75051493-75051512 MS.gene049411:intron 30.0%
! ATTTTCCAAAAGATGGATAC+GGG - chr3.1:75050937-75050956 MS.gene049411:CDS 30.0%
! GATTTTCCAAAAGATGGATA+CGG - chr3.1:75050936-75050955 MS.gene049411:CDS 30.0%
! TGTTTGGAACTTATTGAAAC+TGG - chr3.1:75051325-75051344 MS.gene049411:intron 30.0%
!! ACCAAGGATATTGTTATTTG+TGG - chr3.1:75051158-75051177 MS.gene049411:CDS 30.0%
!! GTTTTGGATTTTCCAAAAGA+TGG - chr3.1:75050930-75050949 MS.gene049411:CDS 30.0%
!! TACCAATTTATCTCTGAAAC+TGG + chr3.1:75051785-75051804 None:intergenic 30.0%
!!! ATAGGTTTTGGATTTTGCAA+AGG - chr3.1:75050819-75050838 MS.gene049411:CDS 30.0%
AAATATGGAGAGGATACGTT+AGG + chr3.1:75051417-75051436 None:intergenic 35.0%
AAATGACAGCTAGTTGTGTT+TGG - chr3.1:75051182-75051201 MS.gene049411:CDS 35.0%
AGCCACAAAAACCAAAAAAG+CGG + chr3.1:75051541-75051560 None:intergenic 35.0%
ATTGTATCGTAATTGAGTCC+GGG - chr3.1:75050902-75050921 MS.gene049411:CDS 35.0%
CACATTGCGTGGATATATAT+GGG - chr3.1:75050771-75050790 MS.gene049411:CDS 35.0%
CCATAAGCAAGGTTCATAAA+TGG + chr3.1:75051570-75051589 None:intergenic 35.0%
CCATTTATGAACCTTGCTTA+TGG - chr3.1:75051567-75051586 MS.gene049411:intron 35.0%
CTGATCAATTTAAGTGTGGT+CGG - chr3.1:75052812-75052831 MS.gene049411:CDS 35.0%
GATTCAGCAACAAGAAATTG+TGG + chr3.1:75051623-75051642 None:intergenic 35.0%
GGAACTTATTGAAACTGGAA+TGG - chr3.1:75051330-75051349 MS.gene049411:intron 35.0%
GTTGTTAGGGTTCAATTCAA+AGG - chr3.1:75050559-75050578 MS.gene049411:CDS 35.0%
TAGGGTTCAATTCAAAGGAA+GGG - chr3.1:75050564-75050583 MS.gene049411:CDS 35.0%
TGCCAGTTTCAGAGATAAAT+TGG - chr3.1:75051780-75051799 MS.gene049411:intron 35.0%
TGTTTGGATTCACCAAAGTT+AGG - chr3.1:75051198-75051217 MS.gene049411:intron 35.0%
TTAGGGTTCAATTCAAAGGA+AGG - chr3.1:75050563-75050582 MS.gene049411:CDS 35.0%
TTCTGATGTAATCTTTCAGG+TGG - chr3.1:75051988-75052007 MS.gene049411:intron 35.0%
TTGATCATAGTCTTCAGCTT+TGG + chr3.1:75052403-75052422 None:intergenic 35.0%
! AAAACTTTTCTCCGGAAATC+AGG + chr3.1:75052652-75052671 None:intergenic 35.0%
! AAACTTTTCTCCGGAAATCA+GGG + chr3.1:75052651-75052670 None:intergenic 35.0%
! AGTTTGCATTTGGTAATAGG+TGG + chr3.1:75052854-75052873 None:intergenic 35.0%
! ATTGAACCGTAATTGACTCT+GGG - chr3.1:75050795-75050814 MS.gene049411:CDS 35.0%
! ATTTTGCAAAGGATGGATAC+GGG - chr3.1:75050830-75050849 MS.gene049411:CDS 35.0%
! GAAAAAACTATAACGGGATC+TGG + chr3.1:75051272-75051291 None:intergenic 35.0%
! GATTTTGCAAAGGATGGATA+CGG - chr3.1:75050829-75050848 MS.gene049411:CDS 35.0%
! TACCAAGCAAAACTTTTCTC+CGG + chr3.1:75052660-75052679 None:intergenic 35.0%
! TATTGAACCGTAATTGACTC+TGG - chr3.1:75050794-75050813 MS.gene049411:CDS 35.0%
! TCTGATGTAATCTTTCAGGT+GGG - chr3.1:75051989-75052008 MS.gene049411:intron 35.0%
! TGAACAGCTCAAGAATTTTC+CGG - chr3.1:75050386-75050405 MS.gene049411:CDS 35.0%
! TTTAGCTAAGGTCTTTGAAG+AGG - chr3.1:75052471-75052490 MS.gene049411:intron 35.0%
!! CTGTTGACTTAATTGCGATA+TGG - chr3.1:75052065-75052084 MS.gene049411:intron 35.0%
!! GAGCTGTGTTGTTCAATTTT+AGG - chr3.1:75050692-75050711 MS.gene049411:CDS 35.0%
!! GTTTTGGATTTTGCAAAGGA+TGG - chr3.1:75050823-75050842 MS.gene049411:CDS 35.0%
!!! AGTTCACTTTTTCTTTGTCG+GGG - chr3.1:75051095-75051114 MS.gene049411:CDS 35.0%
!!! CAGTTCACTTTTTCTTTGTC+GGG - chr3.1:75051094-75051113 MS.gene049411:CDS 35.0%
!!! GCAGTTCACTTTTTCTTTGT+CGG - chr3.1:75051093-75051112 MS.gene049411:CDS 35.0%
!!! TACCGCTTTTTTGGTTTTTG+TGG - chr3.1:75051536-75051555 MS.gene049411:intron 35.0%
ACCAAAAAAGCGGTATAGTG+TGG + chr3.1:75051531-75051550 None:intergenic 40.0%
AGAAAAGGAAGCCATAAGCA+AGG + chr3.1:75051581-75051600 None:intergenic 40.0%
AGAGGCAGATGAAGATATGA+TGG - chr3.1:75052489-75052508 MS.gene049411:intron 40.0%
ATCAGAAGAACCCTGATTTC+CGG - chr3.1:75052638-75052657 MS.gene049411:intron 40.0%
ATTCAGCGCGAGACAAAATA+AGG - chr3.1:75052431-75052450 MS.gene049411:intron 40.0%
CAAAATTCTCGTCAATACCC+AGG - chr3.1:75050416-75050435 MS.gene049411:CDS 40.0%
CAAGTGACATAGGTTGTCAT+AGG + chr3.1:75052892-75052911 None:intergenic 40.0%
CCAAGGTGGAGAAAGTTAAT+GGG - chr3.1:75052227-75052246 MS.gene049411:intron 40.0%
CCTATACCCAGAGTCAATTA+CGG + chr3.1:75050804-75050823 None:intergenic 40.0%
CTAAGGTTGAGTCAACGAAT+GGG - chr3.1:75052140-75052159 MS.gene049411:intron 40.0%
GAAGGAGAAAGAGAAAGAGT+TGG - chr3.1:75050272-75050291 MS.gene049411:CDS 40.0%
GCACATTGCGTGGATATATA+TGG - chr3.1:75050770-75050789 MS.gene049411:CDS 40.0%
GCAGTTAACACAAGTGACAT+AGG + chr3.1:75052902-75052921 None:intergenic 40.0%
GGATTCACCAAAGTTAGGAT+TGG - chr3.1:75051203-75051222 MS.gene049411:intron 40.0%
GTGGAGAAAGTTAATGGGAA+TGG - chr3.1:75052232-75052251 MS.gene049411:intron 40.0%
TAAGGTTGAGTCAACGAATG+GGG - chr3.1:75052141-75052160 MS.gene049411:intron 40.0%
TATCCTGATATCCATGCAAC+TGG + chr3.1:75050879-75050898 None:intergenic 40.0%
TGACTCAACCTTAGAATCAG+AGG + chr3.1:75052134-75052153 None:intergenic 40.0%
TTCAGCGCGAGACAAAATAA+GGG - chr3.1:75052432-75052451 MS.gene049411:intron 40.0%
! AGACCTTAGCTAAAGCATCT+CGG + chr3.1:75052465-75052484 None:intergenic 40.0%
! AGGACCTATACTTGACCTTT+TGG + chr3.1:75052600-75052619 None:intergenic 40.0%
! ATCATAGTCTTCAGCTTTGG+TGG + chr3.1:75052400-75052419 None:intergenic 40.0%
! ATTTTCTTTGCCGCAGATAC+TGG + chr3.1:75052358-75052377 None:intergenic 40.0%
! GCGAGTTTGCATTTGGTAAT+AGG + chr3.1:75052857-75052876 None:intergenic 40.0%
! GGACCTATACTTGACCTTTT+GGG + chr3.1:75052599-75052618 None:intergenic 40.0%
! TCTAAGGTTGAGTCAACGAA+TGG - chr3.1:75052139-75052158 MS.gene049411:intron 40.0%
! TTCCGGAGAAAAGTTTTGCT+TGG - chr3.1:75052655-75052674 MS.gene049411:intron 40.0%
! TTGACTCTGGGTATAGGTTT+TGG - chr3.1:75050807-75050826 MS.gene049411:CDS 40.0%
! TTGAGTCCGGGTATATGTTT+TGG - chr3.1:75050914-75050933 MS.gene049411:CDS 40.0%
!!! GTTCACTTTTTCTTTGTCGG+GGG - chr3.1:75051096-75051115 MS.gene049411:CDS 40.0%
!!! TTCACTTTTTCTTTGTCGGG+GGG - chr3.1:75051097-75051116 MS.gene049411:CDS 40.0%
CAATTTAAGTGTGGTCGGTG+TGG - chr3.1:75052817-75052836 MS.gene049411:CDS 45.0%
CAGAAATGGCTAGTGAGCAA+AGG - chr3.1:75052716-75052735 MS.gene049411:intron 45.0%
CATTTCTGCTGAGCTCATGA+CGG + chr3.1:75052704-75052723 None:intergenic 45.0%
CCAAAAGATGGATACGGGTA+TGG - chr3.1:75050942-75050961 MS.gene049411:CDS 45.0%
CCCATTAACTTTCTCCACCT+TGG + chr3.1:75052230-75052249 None:intergenic 45.0%
CCTACACTAACCCTCAGTAA+CGG + chr3.1:75050970-75050989 None:intergenic 45.0%
CCTTCAGTGAAGGTTGAGAA+AGG - chr3.1:75052196-75052215 MS.gene049411:intron 45.0%
CCTTTCTCAACCTTCACTGA+AGG + chr3.1:75052199-75052218 None:intergenic 45.0%
GAAAACTGGGGTCCTTCAAA+TGG - chr3.1:75052571-75052590 MS.gene049411:intron 45.0%
GAGCCCAAAAGGTCAAGTAT+AGG - chr3.1:75052593-75052612 MS.gene049411:intron 45.0%
GCAAAAGAGTCCTTCAGTGA+AGG - chr3.1:75052186-75052205 MS.gene049411:intron 45.0%
GCCAAGGTGGAGAAAGTTAA+TGG - chr3.1:75052226-75052245 MS.gene049411:intron 45.0%
GGAGGAAAAACCAGTATCTG+CGG - chr3.1:75052345-75052364 MS.gene049411:intron 45.0%
GTGTTAACTGCAACAACCGT+TGG - chr3.1:75052911-75052930 MS.gene049411:CDS 45.0%
TACCTCGAACATCAAAGCGA+AGG - chr3.1:75052324-75052343 MS.gene049411:intron 45.0%
TAGCCAGTTGCATGGATATC+AGG - chr3.1:75050873-75050892 MS.gene049411:CDS 45.0%
TCCTTCAAATGGAGCCCAAA+AGG - chr3.1:75052582-75052601 MS.gene049411:intron 45.0%
TCTCCGAGATGCTTTAGCTA+AGG - chr3.1:75052459-75052478 MS.gene049411:intron 45.0%
TTCTTCGCTGGGACTATCAT+CGG + chr3.1:75050346-75050365 None:intergenic 45.0%
! ACCTTTTGGGCTCCATTTGA+AGG + chr3.1:75052586-75052605 None:intergenic 45.0%
! CCATACCCGTATCCATCTTT+TGG + chr3.1:75050945-75050964 None:intergenic 45.0%
! CCGTAATTGACTCTGGGTAT+AGG - chr3.1:75050801-75050820 MS.gene049411:CDS 45.0%
!! GCTGAGCTCTGGAAATGTAA+AGG - chr3.1:75052264-75052283 MS.gene049411:intron 45.0%
!! TGAGAAAGGAGAAAGTGCCA+AGG - chr3.1:75052210-75052229 MS.gene049411:intron 45.0%
!!! GCCACACTATACCGCTTTTT+TGG - chr3.1:75051527-75051546 MS.gene049411:intron 45.0%
AAAAGCCCGAATGTTCTCCC+TGG + chr3.1:75052044-75052063 None:intergenic 50.0%
AAACTCTCACCAAGCATCCC+AGG - chr3.1:75052023-75052042 MS.gene049411:intron 50.0%
AAAGCCCGAATGTTCTCCCT+GGG + chr3.1:75052043-75052062 None:intergenic 50.0%
AACTCTCACCAAGCATCCCA+GGG - chr3.1:75052024-75052043 MS.gene049411:intron 50.0%
AATGGGGAGAGAGCTAAAGC+TGG - chr3.1:75052157-75052176 MS.gene049411:intron 50.0%
AATGTTCTCCCTGGGATGCT+TGG + chr3.1:75052035-75052054 None:intergenic 50.0%
ACTGTCACTGCCACACGAAT+AGG + chr3.1:75052535-75052554 None:intergenic 50.0%
AGCATCCCAGGGAGAACATT+CGG - chr3.1:75052035-75052054 MS.gene049411:intron 50.0%
ATGGGGAGAGAGCTAAAGCT+GGG - chr3.1:75052158-75052177 MS.gene049411:intron 50.0%
CAGCACTGCGAGTTTGCATT+TGG + chr3.1:75052864-75052883 None:intergenic 50.0%
CGTCATGAGCTCAGCAGAAA+TGG - chr3.1:75052702-75052721 MS.gene049411:intron 50.0%
CTCCTTCGCTTTGATGTTCG+AGG + chr3.1:75052329-75052348 None:intergenic 50.0%
CTCGAACATCAAAGCGAAGG+AGG - chr3.1:75052327-75052346 MS.gene049411:intron 50.0%
CTGTCACTGCCACACGAATA+GGG + chr3.1:75052534-75052553 None:intergenic 50.0%
GCAAAGGATGGATACGGGTA+AGG - chr3.1:75050835-75050854 MS.gene049411:CDS 50.0%
GGTTCATCAAAGCTGAGCTC+TGG - chr3.1:75052253-75052272 MS.gene049411:intron 50.0%
TATTCGTGTGGCAGTGACAG+TGG - chr3.1:75052534-75052553 MS.gene049411:intron 50.0%
TGCATGTGACCCTATTCGTG+TGG - chr3.1:75052522-75052541 MS.gene049411:intron 50.0%
TTGGTACTGTTGAGCCACAG+CGG - chr3.1:75052674-75052693 MS.gene049411:intron 50.0%
! CCGTTACTGAGGGTTAGTGT+AGG - chr3.1:75050967-75050986 MS.gene049411:CDS 50.0%
!! GAAAGGAGAAAGTGCCAAGG+TGG - chr3.1:75052213-75052232 MS.gene049411:intron 50.0%
AGTGTGGTCGGTGTGGACAA+AGG - chr3.1:75052824-75052843 MS.gene049411:CDS 55.0%
GAACGGGGCCTCTGATTCTA+AGG - chr3.1:75052123-75052142 MS.gene049411:intron 55.0%
GCATCCCAGGGAGAACATTC+GGG - chr3.1:75052036-75052055 MS.gene049411:intron 55.0%
GGGTATGGCACCGTTACTGA+GGG - chr3.1:75050957-75050976 MS.gene049411:CDS 55.0%
GTACGAAGCCGCGAAGAAAG+CGG - chr3.1:75050302-75050321 MS.gene049411:CDS 55.0%
GTTCAAGCGCATCGAGGCAA+CGG + chr3.1:75050371-75050390 None:intergenic 55.0%
TGAGCTGTTCAAGCGCATCG+AGG + chr3.1:75050377-75050396 None:intergenic 55.0%
TTCAAGCGCATCGAGGCAAC+GGG + chr3.1:75050370-75050389 None:intergenic 55.0%
TTCGCTGGGACTATCATCGG+TGG + chr3.1:75050343-75050362 None:intergenic 55.0%
TTTCTTTGTCGGGGGGCAGA+AGG - chr3.1:75051104-75051123 MS.gene049411:CDS 55.0%
! AGGCAACGGGTTTCTTCGCT+GGG + chr3.1:75050357-75050376 None:intergenic 55.0%
! CTGAGGGTTAGTGTAGGCGT+TGG - chr3.1:75050973-75050992 MS.gene049411:CDS 55.0%
! GCTTTGTTCGACTGTGAGCG+TGG - chr3.1:75052769-75052788 MS.gene049411:intron 55.0%
CGGGTATGGCACCGTTACTG+AGG - chr3.1:75050956-75050975 MS.gene049411:CDS 60.0%
GCTGGGACTATCATCGGTGG+AGG + chr3.1:75050340-75050359 None:intergenic 60.0%
GGGACTATCATCGGTGGAGG+TGG + chr3.1:75050337-75050356 None:intergenic 60.0%
TACTGTTGAGCCACAGCGGC+TGG - chr3.1:75052678-75052697 MS.gene049411:intron 60.0%
! AGCATCCGCCGCTTTCTTCG+CGG + chr3.1:75050313-75050332 None:intergenic 60.0%
! GAGGCAACGGGTTTCTTCGC+TGG + chr3.1:75050358-75050377 None:intergenic 60.0%
CGAAGCCGCGAAGAAAGCGG+CGG - chr3.1:75050305-75050324 MS.gene049411:CDS 65.0%
CTTTGGTGGAGCAGCAGCGC+TGG + chr3.1:75052386-75052405 None:intergenic 65.0%
CTCATGACGGCCAGCCGCTG+TGG + chr3.1:75052691-75052710 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 75050267 75052945 75050267 ID=MS.gene049411
chr3.1 mRNA 75050267 75052945 75050267 ID=MS.gene049411.t1;Parent=MS.gene049411
chr3.1 exon 75052775 75052945 75052775 ID=MS.gene049411.t1.exon1;Parent=MS.gene049411.t1
chr3.1 CDS 75052775 75052945 75052775 ID=cds.MS.gene049411.t1;Parent=MS.gene049411.t1
chr3.1 exon 75050267 75051205 75050267 ID=MS.gene049411.t1.exon2;Parent=MS.gene049411.t1
chr3.1 CDS 75050267 75051205 75050267 ID=cds.MS.gene049411.t1;Parent=MS.gene049411.t1
Gene Sequence

>MS.gene049411

ATGGAGAAGGAGAAAGAGAAAGAGTTGGTCGAATTGTACGAAGCCGCGAAGAAAGCGGCGGATGCTTCCACCTCCACCGATGATAGTCCCAGCGAAGAAACCCGTTGCCTCGATGCGCTTGAACAGCTCAAGAATTTTCCGGTCAATTACAAAATTCTCGTCAATACCCAGGTTATTATTTTTCTATTCACATTGCAAATTTTGGTTTCTTTGATTTTCAATTATTTCTTATGTAAATTTTTGTATTATTTTTATTTTCACGTTGCATATTTGATATGTTTTGCATGTTATAGTTGTTAGGGTTCAATTCAAAGGAAGGGAAGATATAGATCAGACATGTTGAAAATTTATGACAGTTTTGAGTGATAATTTATTTGATTTAGTCTCTTTTCTGAACATTGAGTTATAGATTTGTAAATTTGGATGAGCTGTGTTGTTCAATTTTAGGTTTTGTTTTTGGTTAAATTGGGTCCCTGAGTTTCTGTTGATGTTAAATTAAATTAGCACATTGCGTGGATATATATGGGTATTGAACCGTAATTGACTCTGGGTATAGGTTTTGGATTTTGCAAAGGATGGATACGGGTAAGGAGCCGTAATTTAAATTAGCCAGTTGCATGGATATCAGGATATGTATTGTATCGTAATTGAGTCCGGGTATATGTTTTGGATTTTCCAAAAGATGGATACGGGTATGGCACCGTTACTGAGGGTTAGTGTAGGCGTTGGAGTTTTCAAAAGAATTTTACTGACATGCTGAATGCTGATAGTAATTTCCGAAATCTTGTATTTTTTTTTAATTCTTTGATGACGTGGATGTCGCATAGCAGTTCACTTTTTCTTTGTCGGGGGGCAGAAGGTATCATTGTTGTCGTTATCTTGGAATTTATGACCAAGGATATTGTTATTTGTGGTAAATGACAGCTAGTTGTGTTTGGATTCACCAAAGTTAGGATTGGTTTCATTTAACTTGAGTTTATTTCATTTAGAAGTCAGATATAGCCAGATCCCGTTATAGTTTTTTCTGATTTGAATAGATTTTGGAAATCAACTCTTAATGTTTGGAACTTATTGAAACTGGAATGGGTTTGATTTGATCTAATTTGATTATTGCACATTTTTTCCCTACAGATATTTCTAAACAAATCCTAACGTATCCTCTCCATATTTCATAGCAATATTTTTTCAACGCTAGACAAAGTATTTGACCCGTGAAATACTAGTTCATAGTTTATTGGTCTGATTGTGGTCTAATTGTGCGCCACACTATACCGCTTTTTTGGTTTTTGTGGCTGATGCTCCATTTATGAACCTTGCTTATGGCTTCCTTTTCTTACAATCATACTCACATTGCCACAATTTCTTGTTGCTGAATCTGTGTATCCTTGCTTAATAAATAGTTTGTTTGCTTTTAATAATCATAATAGAAGAACATTATCAACATTGAAAAGTATTTTGACGCTTTGCTTTTATTTTTGTACTTTTTAATCTAAGTTATTAATCTATCTGAGATTGCCAGTTTCAGAGATAAATTGGTAAATGAAAACAAAATTAAATGAAAAATTGAAGAGATGTCCAAACTAGATAGAAAAAACTGTAGTATTTGGAATTCAGGGAAAAGAAATAGAGATAGTTAAGGGTAGACCAAATTGATCTCAAATCTTTACTTTTTTCATGGCTTTTCCTGTACTTGTTACGATTTTCATTTTTTTTTTTTAATTTTCTGATGTAATCTTTCAGGTGGGAAAACATCTTAAAACTCTCACCAAGCATCCCAGGGAGAACATTCGGGCTTTTGCTGTTGACTTAATTGCGATATGGAAAGACGTAATTATCAAGGAAACAAGTAAAAATAAGAACGGGGCCTCTGATTCTAAGGTTGAGTCAACGAATGGGGAGAGAGCTAAAGCTGGGAAATTGCAAAAGAGTCCTTCAGTGAAGGTTGAGAAAGGAGAAAGTGCCAAGGTGGAGAAAGTTAATGGGAATGGTTCATCAAAGCTGAGCTCTGGAAATGTAAAGGCACAAAATGTGGATGTCAAAATTGAGAAAACTGATCGTACCTCGAACATCAAAGCGAAGGAGGAAAAACCAGTATCTGCGGCAAAGAAAATTTCATCCAGCGCTGCTGCTCCACCAAAGCTGAAGACTATGATCAAATCTAACGATTCAGCGCGAGACAAAATAAGGGAACTTCTCCGAGATGCTTTAGCTAAGGTCTTTGAAGAGGCAGATGAAGATATGATGGATGAAGTGAATGCATGTGACCCTATTCGTGTGGCAGTGACAGTGGAGTCCGTATTATTTGAAAACTGGGGTCCTTCAAATGGAGCCCAAAAGGTCAAGTATAGGTCCTTAATGTTTAATCTTAAGGATCAGAAGAACCCTGATTTCCGGAGAAAAGTTTTGCTTGGTACTGTTGAGCCACAGCGGCTGGCCGTCATGAGCTCAGCAGAAATGGCTAGTGAGCAAAGGAAGCAAGAGAATGAGAAAATCGAGCAGAAAGCTTTGTTCGACTGTGAGCGTGGACTTCAACCAAAAGCTACTACTGATCAATTTAAGTGTGGTCGGTGTGGACAAAGGAAAACCACCTATTACCAAATGCAAACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACTTGTGTTAACTGCAACAACCGTTGGAAGTTTTGTTAG

Protein sequence

>MS.gene049411.t1

MEKEKEKELVELYEAAKKAADASTSTDDSPSEETRCLDALEQLKNFPVNYKILVNTQVGKHLKTLTKHPRENIRAFAVDLIAIWKDVIIKETSKNKNGASDSKVESTNGERAKAGKLQKSPSVKVEKGESAKVEKVNGNGSSKLSSGNVKAQNVDVKIEKTDRTSNIKAKEEKPVSAAKKISSSAAAPPKLKTMIKSNDSARDKIRELLRDALAKVFEEADEDMMDEVNACDPIRVAVTVESVLFENWGPSNGAQKVKYRSLMFNLKDQKNPDFRRKVLLGTVEPQRLAVMSSAEMASEQRKQENEKIEQKALFDCERGLQPKATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCVNCNNRWKFC