AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99938

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99938.t1 MTR_5g058470 86.266 233 18 3 1 231 78 298 7.92e-113 325
MS.gene99938.t1 MTR_3g072610 59.735 226 60 10 12 230 18 219 1.06e-54 175
MS.gene99938.t1 MTR_5g008790 55.056 89 39 1 17 104 16 104 1.00e-26 101
MS.gene99938.t1 MTR_3g105510 53.684 95 38 3 13 104 31 122 1.15e-26 103
MS.gene99938.t1 MTR_1g014780 50.505 99 40 3 16 108 35 130 1.78e-25 100
MS.gene99938.t1 MTR_1g014800 53.763 93 36 3 17 104 29 119 4.00e-25 98.6
MS.gene99938.t1 MTR_1g014860 46.789 109 49 3 5 107 8 113 4.54e-25 98.6
MS.gene99938.t1 MTR_6g088405 63.291 79 25 2 19 97 44 118 1.42e-24 97.4
MS.gene99938.t1 MTR_1g014820 52.083 96 36 3 17 107 25 115 1.47e-24 98.2
MS.gene99938.t1 MTR_2g101340 52.577 97 35 4 8 97 23 115 1.56e-24 96.7
MS.gene99938.t1 MTR_4g035430 53.608 97 41 3 8 104 21 113 7.73e-24 95.5
MS.gene99938.t1 MTR_1g019110 49.038 104 47 3 17 115 42 144 2.42e-23 93.2
MS.gene99938.t1 MTR_2g043050 38.462 182 83 8 19 187 19 184 3.05e-23 93.6
MS.gene99938.t1 MTR_5g012910 56.322 87 34 2 11 97 20 102 5.19e-23 92.0
MS.gene99938.t1 MTR_5g016750 65.574 61 20 1 16 76 22 81 6.92e-23 92.0
MS.gene99938.t1 MTR_3g110205 46.154 104 52 3 15 118 39 138 8.12e-23 91.7
MS.gene99938.t1 MTR_7g046260 54.255 94 36 4 7 97 46 135 9.52e-23 92.8
MS.gene99938.t1 MTR_2g043030 34.574 188 98 5 1 174 1 177 1.37e-22 91.7
MS.gene99938.t1 MTR_2g043040 34.112 214 115 7 1 196 1 206 1.65e-22 92.0
MS.gene99938.t1 MTR_8g102800 55.696 79 31 2 19 97 37 111 2.51e-22 91.7
MS.gene99938.t1 MTR_3g105480 52.874 87 35 3 21 104 33 116 3.31e-22 91.3
MS.gene99938.t1 MTR_7g117690 49.383 81 40 1 5 85 14 93 2.37e-21 87.4
MS.gene99938.t1 MTR_4g100650 54.023 87 34 4 13 97 66 148 7.26e-21 88.2
MS.gene99938.t1 MTR_3g102100 60.656 61 23 1 16 76 42 101 8.97e-21 85.9
MS.gene99938.t1 MTR_1g028560 28.780 205 131 5 16 218 112 303 1.54e-20 89.0
MS.gene99938.t1 MTR_8g013860 51.807 83 36 3 15 97 43 121 1.55e-20 86.3
MS.gene99938.t1 MTR_8g006410 53.333 75 34 1 2 76 35 108 1.68e-20 86.3
MS.gene99938.t1 MTR_2g043020 32.979 188 102 5 1 174 1 178 1.81e-20 85.9
MS.gene99938.t1 MTR_4g114570 44.330 97 48 2 17 108 5 100 5.85e-20 85.1
MS.gene99938.t1 MTR_6g088425 58.065 93 33 3 15 107 45 131 1.46e-19 84.3
MS.gene99938.t1 MTR_8g027465 48.864 88 36 3 4 85 18 102 1.94e-19 82.8
MS.gene99938.t1 MTR_4g010640 58.730 63 25 1 15 77 3 64 2.36e-19 83.2
MS.gene99938.t1 MTR_3g106290 60.656 61 23 1 16 76 5 64 5.47e-19 81.6
MS.gene99938.t1 MTR_4g086165 55.556 63 27 1 15 77 78 139 7.51e-19 82.0
MS.gene99938.t1 MTR_5g082950 56.452 62 27 0 9 70 56 117 1.06e-18 83.6
MS.gene99938.t1 MTR_2g103700 57.377 61 25 1 17 77 5 64 1.46e-18 80.1
MS.gene99938.t1 MTR_2g078680 53.623 69 31 1 11 78 23 91 1.51e-18 80.9
MS.gene99938.t1 MTR_4g008860 60.656 61 23 1 16 76 5 64 1.83e-18 80.5
MS.gene99938.t1 MTR_6g465850 51.136 88 39 2 19 106 63 146 1.86e-18 82.0
MS.gene99938.t1 MTR_1g006660 56.962 79 30 2 19 97 47 121 2.20e-18 81.6
MS.gene99938.t1 MTR_7g020980 55.556 63 27 1 14 76 46 107 2.22e-18 79.7
MS.gene99938.t1 MTR_6g466130 48.864 88 41 2 19 106 66 149 2.56e-18 80.9
MS.gene99938.t1 MTR_7g028925 61.667 60 19 2 17 76 27 82 2.90e-18 77.0
MS.gene99938.t1 MTR_8g092460 54.688 64 28 1 13 76 139 201 3.42e-18 82.0
MS.gene99938.t1 MTR_4g086160 51.316 76 34 2 19 92 96 170 3.93e-18 80.5
MS.gene99938.t1 MTR_1g090170 42.857 98 53 2 15 112 148 242 4.03e-18 81.6
MS.gene99938.t1 MTR_0939s0010 49.367 79 39 1 19 97 65 142 4.16e-18 79.7
MS.gene99938.t1 MTR_2g014340 42.500 80 45 1 1 79 1 80 4.19e-18 79.7
MS.gene99938.t1 MTR_7g021010 53.968 63 28 1 14 76 46 107 4.65e-18 79.0
MS.gene99938.t1 MTR_3g053690 43.000 100 54 2 15 114 23 119 4.97e-18 80.1
MS.gene99938.t1 MTR_1g090170 56.452 62 26 1 15 76 235 295 5.95e-18 82.0
MS.gene99938.t1 MTR_4g086220 57.627 59 24 1 19 77 96 153 7.90e-18 79.7
MS.gene99938.t1 MTR_7g021010 53.968 63 28 1 14 76 7 68 8.67e-18 77.4
MS.gene99938.t1 MTR_2g435590 54.839 62 27 1 15 76 92 152 9.83e-18 79.7
MS.gene99938.t1 MTR_2g089170 55.385 65 28 1 19 83 65 128 1.06e-17 78.2
MS.gene99938.t1 MTR_1g101600 49.351 77 33 2 4 75 21 96 1.11e-17 78.6
MS.gene99938.t1 MTR_6g465530 48.864 88 41 2 19 106 33 116 1.57e-17 78.2
MS.gene99938.t1 MTR_8g022820 45.205 73 39 1 7 79 112 183 1.67e-17 80.9
MS.gene99938.t1 MTR_8g022820 45.205 73 39 1 7 79 112 183 1.67e-17 80.9
MS.gene99938.t1 MTR_8g022820 45.205 73 39 1 7 79 111 182 1.68e-17 80.5
MS.gene99938.t1 MTR_2g105380 46.479 71 37 1 9 79 107 176 2.69e-17 80.1
MS.gene99938.t1 MTR_7g096700 47.674 86 38 4 3 85 2 83 2.92e-17 75.9
MS.gene99938.t1 MTR_2g085015 32.870 216 104 11 19 229 47 226 2.98e-17 77.8
MS.gene99938.t1 MTR_3g074130 58.333 60 24 1 17 76 148 206 5.39e-17 79.0
MS.gene99938.t1 MTR_5g062700 58.333 60 24 1 17 76 171 229 5.86e-17 79.0
MS.gene99938.t1 MTR_1g048610 45.238 84 42 3 1 81 69 151 6.46e-17 77.0
MS.gene99938.t1 MTR_1g087920 43.421 76 42 1 9 84 67 141 6.46e-17 78.2
MS.gene99938.t1 MTR_2g090235 56.667 60 25 1 17 76 216 274 6.59e-17 79.3
MS.gene99938.t1 MTR_4g086190 54.237 59 26 1 19 77 96 153 7.45e-17 77.0
MS.gene99938.t1 MTR_8g090350 56.667 60 25 1 17 76 111 169 8.23e-17 77.8
MS.gene99938.t1 MTR_5g083340 55.738 61 26 1 16 76 82 141 9.98e-17 78.6
MS.gene99938.t1 MTR_6g465460 40.152 132 47 5 10 122 33 151 1.05e-16 77.4
MS.gene99938.t1 MTR_7g092190 57.627 59 24 1 18 76 29 86 1.35e-16 77.0
MS.gene99938.t1 MTR_4g100420 51.471 68 31 2 15 81 153 219 1.77e-16 77.0
MS.gene99938.t1 MTR_4g082345 42.857 91 51 1 16 106 45 134 2.72e-16 76.6
MS.gene99938.t1 MTR_1g074310 45.679 81 42 2 2 81 4 83 4.80e-16 72.8
MS.gene99938.t1 MTR_7g096750 52.857 70 28 3 15 83 16 81 5.04e-16 72.4
MS.gene99938.t1 MTR_4g102670 46.429 84 40 3 14 97 10 88 5.80e-16 73.2
MS.gene99938.t1 MTR_1g074230 58.065 62 24 2 18 78 18 78 5.95e-16 72.4
MS.gene99938.t1 MTR_6g465510 57.895 57 23 1 19 75 33 88 6.26e-16 73.9
MS.gene99938.t1 MTR_6g466000 46.591 88 43 3 19 106 57 140 7.01e-16 74.3
MS.gene99938.t1 MTR_6g465450 48.718 78 27 2 10 75 33 109 9.20e-16 74.3
MS.gene99938.t1 MTR_2g015050 46.914 81 38 3 3 79 115 194 1.13e-15 74.3
MS.gene99938.t1 MTR_6g465690 48.684 76 33 2 5 75 44 118 1.31e-15 73.9
MS.gene99938.t1 MTR_3g090760 39.583 96 57 1 17 112 111 205 1.68e-15 74.7
MS.gene99938.t1 MTR_5g010930 43.137 102 48 3 19 114 49 146 2.03e-15 72.8
MS.gene99938.t1 MTR_4g078710 45.122 82 32 2 7 76 4 84 2.15e-15 72.8
MS.gene99938.t1 MTR_4g088005 50.725 69 32 2 15 82 53 120 2.15e-15 70.5
MS.gene99938.t1 MTR_1g070070 50.746 67 31 2 15 80 17 82 2.34e-15 70.9
MS.gene99938.t1 MTR_5g083330 53.226 62 28 1 15 76 31 91 2.41e-15 73.9
MS.gene99938.t1 MTR_6g465430 46.591 88 43 2 19 106 54 137 2.55e-15 73.2
MS.gene99938.t1 MTR_5g085070 49.275 69 34 1 9 77 41 108 2.83e-15 73.6
MS.gene99938.t1 MTR_2g015040 50.769 65 30 2 16 79 60 123 3.71e-15 70.9
MS.gene99938.t1 MTR_5g009620 38.655 119 65 3 8 120 101 217 4.28e-15 73.2
MS.gene99938.t1 MTR_8g099215 55.556 54 24 0 17 70 105 158 5.60e-15 72.8
MS.gene99938.t1 MTR_5g010940 46.739 92 39 3 19 104 54 141 1.05e-14 71.2
MS.gene99938.t1 MTR_6g465420 42.105 95 37 3 19 106 54 137 1.07e-14 71.6
MS.gene99938.t1 MTR_8g006815 54.098 61 26 2 17 76 94 153 1.09e-14 70.5
MS.gene99938.t1 MTR_8g069360 53.333 60 27 1 18 76 43 102 1.10e-14 72.8
MS.gene99938.t1 MTR_6g466020 54.386 57 25 1 19 75 43 98 1.20e-14 70.1
MS.gene99938.t1 MTR_2g019750 39.815 108 53 4 1 99 28 132 1.60e-14 71.6
MS.gene99938.t1 MTR_7g081805 50.000 72 33 3 17 86 59 129 1.66e-14 70.1
MS.gene99938.t1 MTR_5g010910 46.739 92 39 3 19 104 49 136 1.67e-14 70.5
MS.gene99938.t1 MTR_5g085100 49.206 63 31 1 15 77 42 103 1.92e-14 71.2
MS.gene99938.t1 MTR_2g014300 47.143 70 36 1 7 76 3 71 1.98e-14 69.3
MS.gene99938.t1 MTR_8g006840 52.381 63 28 2 15 76 121 182 2.87e-14 69.3
MS.gene99938.t1 MTR_5g075570 49.153 59 29 1 19 77 124 181 2.88e-14 70.5
MS.gene99938.t1 MTR_4g100380 50.000 72 34 2 11 81 137 207 3.82e-14 70.1
MS.gene99938.t1 MTR_7g081815 52.459 61 27 2 17 76 59 118 4.94e-14 68.9
MS.gene99938.t1 MTR_5g008590 47.872 94 45 2 19 112 11 100 5.43e-14 68.2
MS.gene99938.t1 MTR_1g090290 46.875 64 32 2 17 79 111 173 6.41e-14 68.2
MS.gene99938.t1 MTR_7g011630 53.333 60 27 1 16 75 39 97 7.82e-14 70.5
MS.gene99938.t1 MTR_8g085960 45.833 72 35 2 14 85 20 87 9.31e-14 68.6
MS.gene99938.t1 MTR_6g012970 51.667 60 28 1 16 75 35 93 1.11e-13 69.7
MS.gene99938.t1 MTR_7g085810 55.172 58 25 1 18 75 29 85 1.26e-13 68.6
MS.gene99938.t1 MTR_3g107380 59.375 64 25 1 14 77 3 65 1.38e-13 67.8
MS.gene99938.t1 MTR_1g012470 57.143 63 26 1 15 77 3 64 1.47e-13 67.4
MS.gene99938.t1 MTR_8g006825 49.180 61 29 2 17 76 94 153 1.62e-13 67.4
MS.gene99938.t1 MTR_8g023680 56.522 46 20 0 18 63 115 160 3.44e-13 68.2
MS.gene99938.t1 MTR_4g111915 45.588 68 36 1 9 76 43 109 3.76e-13 65.1
MS.gene99938.t1 MTR_5g032820 50.000 60 29 1 18 76 45 104 3.86e-13 68.2
MS.gene99938.t1 MTR_5g008470 55.357 56 24 1 21 76 77 131 4.22e-13 65.9
MS.gene99938.t1 MTR_2g016730 43.056 72 40 1 6 76 10 81 4.53e-13 67.8
MS.gene99938.t1 MTR_7g081795 49.180 61 29 2 17 76 58 117 6.28e-13 65.9
MS.gene99938.t1 MTR_4g112490 45.588 68 36 1 9 76 43 109 1.01e-12 65.1
MS.gene99938.t1 MTR_3g098580 52.055 73 32 2 13 83 70 141 1.28e-12 65.9
MS.gene99938.t1 MTR_3g095190 49.438 89 38 2 14 96 165 252 2.56e-12 65.5
MS.gene99938.t1 MTR_8g032610 47.692 65 33 1 17 81 25 88 2.71e-12 65.1
MS.gene99938.t1 MTR_6g033255 60.000 65 25 1 12 76 13 76 2.76e-12 63.9
MS.gene99938.t1 MTR_1g105400 44.068 59 33 0 5 63 101 159 3.11e-12 65.5
MS.gene99938.t1 MTR_6g029180 50.000 62 30 1 14 75 28 88 3.84e-12 65.1
MS.gene99938.t1 MTR_4g119270 38.372 86 49 2 18 103 52 133 5.72e-12 64.7
MS.gene99938.t1 MTR_5g008550 60.345 58 22 1 19 76 21 77 6.96e-12 62.8
MS.gene99938.t1 MTR_1g097190 41.429 70 39 1 12 79 16 85 9.49e-12 61.2
MS.gene99938.t1 MTR_7g084370 50.847 59 28 1 18 75 41 99 1.09e-11 63.2
MS.gene99938.t1 MTR_1g110970 43.548 62 35 0 5 66 83 144 1.17e-11 63.5
MS.gene99938.t1 MTR_5g057810 49.206 63 24 1 4 58 65 127 1.24e-11 63.2
MS.gene99938.t1 MTR_5g057647 49.206 63 24 1 4 58 65 127 1.24e-11 63.2
MS.gene99938.t1 MTR_8g023700 53.333 45 21 0 19 63 117 161 1.86e-11 63.2
MS.gene99938.t1 MTR_1g043350 42.424 99 48 3 2 92 58 155 2.00e-11 62.0
MS.gene99938.t1 MTR_1g101550 58.824 68 26 2 18 85 56 121 3.37e-11 61.2
MS.gene99938.t1 MTR_4g102660 63.830 47 15 2 30 75 57 102 3.82e-11 61.2
MS.gene99938.t1 MTR_1g069960 58.065 62 24 2 18 78 26 86 4.68e-11 59.3
MS.gene99938.t1 MTR_1g023170 46.667 75 39 1 2 76 23 96 7.42e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99938.t1 AT1G21910 47.111 225 61 8 19 230 50 229 8.69e-46 152
MS.gene99938.t1 AT1G44830 49.545 220 67 6 15 230 31 210 1.03e-33 120
MS.gene99938.t1 AT1G77640 46.320 231 83 10 15 230 39 243 7.85e-33 119
MS.gene99938.t1 AT4G06746 54.167 96 39 3 12 105 31 123 2.78e-25 97.4
MS.gene99938.t1 AT1G74930 38.953 172 83 5 6 160 1 167 2.94e-25 98.6
MS.gene99938.t1 AT4G32800 51.087 92 41 3 13 104 13 100 7.27e-25 98.2
MS.gene99938.t1 AT2G35700 51.200 125 52 6 15 139 41 156 7.60e-25 97.4
MS.gene99938.t1 AT4G36900 65.152 66 22 1 11 76 22 86 8.06e-25 97.4
MS.gene99938.t1 AT2G44940 51.852 108 47 3 9 116 90 192 1.77e-24 98.6
MS.gene99938.t1 AT5G67190 44.545 110 48 4 11 113 13 116 3.50e-24 95.5
MS.gene99938.t1 AT3G50260 59.701 67 26 1 10 76 12 77 4.95e-24 94.0
MS.gene99938.t1 AT5G11590 48.598 107 41 3 8 104 30 132 7.14e-24 95.9
MS.gene99938.t1 AT1G19210 61.765 68 25 1 9 76 2 68 1.35e-23 94.0
MS.gene99938.t1 AT3G60490 56.471 85 33 3 13 97 65 145 2.49e-23 94.7
MS.gene99938.t1 AT2G23340 68.333 60 18 1 17 76 26 84 3.98e-23 92.4
MS.gene99938.t1 AT1G22810 47.000 100 46 3 9 106 4 98 4.60e-23 91.3
MS.gene99938.t1 AT1G46768 43.590 117 59 3 16 126 28 143 6.89e-23 91.3
MS.gene99938.t1 AT1G46768 43.590 117 59 3 16 126 28 143 6.89e-23 91.3
MS.gene99938.t1 AT1G46768 44.737 114 56 3 16 123 28 140 7.64e-23 90.5
MS.gene99938.t1 AT3G16280 70.690 58 16 1 19 76 61 117 1.41e-22 92.4
MS.gene99938.t1 AT3G16280 70.690 58 16 1 19 76 79 135 1.56e-22 92.8
MS.gene99938.t1 AT4G31060 48.958 96 45 4 7 100 14 107 2.06e-22 90.9
MS.gene99938.t1 AT4G16750 54.217 83 34 3 15 97 36 114 2.50e-22 90.5
MS.gene99938.t1 AT5G21960 52.273 88 38 3 18 105 6 89 2.69e-22 91.3
MS.gene99938.t1 AT2G25820 56.962 79 30 3 19 97 26 100 3.31e-22 91.3
MS.gene99938.t1 AT1G71520 48.387 93 39 3 18 106 13 100 1.74e-21 87.0
MS.gene99938.t1 AT5G25810 45.370 108 45 3 7 104 14 117 5.68e-21 87.8
MS.gene99938.t1 AT1G01250 48.864 88 41 3 10 97 36 119 2.14e-20 85.5
MS.gene99938.t1 AT4G25470 52.326 86 37 2 19 104 51 132 2.16e-20 86.3
MS.gene99938.t1 AT5G47230 56.944 72 29 2 8 78 145 215 5.87e-20 86.7
MS.gene99938.t1 AT5G51990 50.000 88 40 2 19 106 54 137 1.01e-19 84.7
MS.gene99938.t1 AT5G25390 50.000 88 41 2 17 102 5 91 1.42e-19 83.6
MS.gene99938.t1 AT1G15360 60.656 61 23 1 17 77 5 64 2.68e-19 82.8
MS.gene99938.t1 AT1G15360 60.656 61 23 1 17 77 5 64 2.68e-19 82.8
MS.gene99938.t1 AT2G33710 48.000 75 38 1 2 76 53 126 2.94e-19 83.6
MS.gene99938.t1 AT4G25490 53.750 80 33 2 19 98 48 123 3.48e-19 82.8
MS.gene99938.t1 AT2G33710 48.000 75 38 1 2 76 53 126 3.72e-19 82.8
MS.gene99938.t1 AT5G61890 48.276 87 39 3 15 96 86 171 8.19e-19 82.8
MS.gene99938.t1 AT4G25480 52.500 80 34 2 19 98 51 126 9.47e-19 81.6
MS.gene99938.t1 AT4G28140 53.521 71 28 2 17 87 141 206 1.49e-18 82.8
MS.gene99938.t1 AT4G17490 51.351 74 34 2 6 78 124 196 1.73e-18 82.4
MS.gene99938.t1 AT1G03800 55.556 63 27 1 15 77 49 110 2.75e-18 81.3
MS.gene99938.t1 AT4G13620 58.333 60 24 1 17 76 230 288 2.85e-18 82.8
MS.gene99938.t1 AT5G51190 47.561 82 37 3 16 96 69 145 2.89e-18 80.5
MS.gene99938.t1 AT3G15210 48.810 84 39 3 12 93 18 99 3.10e-18 80.5
MS.gene99938.t1 AT1G36060 60.000 60 23 1 17 76 141 199 4.52e-18 81.6
MS.gene99938.t1 AT2G47520 47.059 68 35 1 9 76 40 106 4.55e-18 79.0
MS.gene99938.t1 AT2G22200 57.377 61 25 1 16 76 68 127 4.79e-18 80.9
MS.gene99938.t1 AT1G12610 47.674 86 41 2 19 104 30 111 5.45e-18 79.7
MS.gene99938.t1 AT5G25190 59.016 61 24 1 16 76 5 64 6.15e-18 79.0
MS.gene99938.t1 AT4G27950 50.000 66 33 0 5 70 104 169 6.77e-18 81.3
MS.gene99938.t1 AT4G39780 57.377 61 25 1 16 76 90 149 6.80e-18 80.5
MS.gene99938.t1 AT1G72360 52.000 75 32 2 10 81 13 86 7.33e-18 79.3
MS.gene99938.t1 AT5G13330 53.226 62 28 1 15 76 35 95 7.47e-18 79.3
MS.gene99938.t1 AT1G71450 58.730 63 25 1 19 81 24 85 7.49e-18 78.6
MS.gene99938.t1 AT1G72360 52.000 75 32 2 10 81 64 137 1.25e-17 79.7
MS.gene99938.t1 AT1G72360 52.703 74 31 2 10 80 62 134 1.28e-17 79.7
MS.gene99938.t1 AT1G22190 58.333 60 24 1 17 76 81 139 1.64e-17 79.3
MS.gene99938.t1 AT2G20880 56.667 60 25 1 17 76 185 243 3.34e-17 79.3
MS.gene99938.t1 AT5G44210 51.471 68 32 1 14 81 28 94 4.28e-17 77.0
MS.gene99938.t1 AT1G78080 58.333 60 24 1 17 76 150 208 4.88e-17 79.0
MS.gene99938.t1 AT5G65130 55.000 60 26 1 17 76 109 167 8.38e-17 77.8
MS.gene99938.t1 AT1G77200 61.429 70 21 2 12 76 31 99 8.56e-17 77.0
MS.gene99938.t1 AT5G65130 55.000 60 26 1 17 76 111 169 8.94e-17 77.8
MS.gene99938.t1 AT5G61600 52.632 76 34 2 4 78 73 147 1.19e-16 76.6
MS.gene99938.t1 AT5G25390 47.727 88 40 3 17 102 5 88 1.37e-16 75.5
MS.gene99938.t1 AT4G11140 51.667 60 28 1 17 76 85 143 1.40e-16 77.0
MS.gene99938.t1 AT3G57600 57.627 59 24 1 18 76 27 84 1.44e-16 77.0
MS.gene99938.t1 AT5G11190 49.474 95 43 2 17 107 5 98 4.07e-16 74.3
MS.gene99938.t1 AT3G61630 57.143 63 26 1 15 76 101 163 4.07e-16 76.3
MS.gene99938.t1 AT5G53290 47.059 68 36 0 3 70 109 176 5.56e-16 76.3
MS.gene99938.t1 AT3G16770 40.789 76 44 1 1 76 61 135 6.77e-16 74.7
MS.gene99938.t1 AT1G63030 45.349 86 43 2 19 104 30 111 7.09e-16 73.2
MS.gene99938.t1 AT1G63030 45.349 86 43 2 19 104 30 111 7.09e-16 73.2
MS.gene99938.t1 AT3G20310 45.333 75 40 1 6 80 14 87 7.52e-16 74.7
MS.gene99938.t1 AT5G19790 47.674 86 37 3 1 83 1 81 8.36e-16 74.7
MS.gene99938.t1 AT1G33760 70.690 58 16 1 19 76 20 76 1.00e-15 73.2
MS.gene99938.t1 AT3G11020 53.846 65 29 1 19 83 78 141 2.33e-15 74.3
MS.gene99938.t1 AT3G23230 49.254 67 32 2 13 78 14 79 4.51e-15 70.1
MS.gene99938.t1 AT1G75490 44.000 75 41 1 2 76 25 98 4.70e-15 71.6
MS.gene99938.t1 AT4G23750 52.727 55 26 0 16 70 119 173 6.61e-15 73.2
MS.gene99938.t1 AT4G23750 52.727 55 26 0 16 70 119 173 6.61e-15 73.2
MS.gene99938.t1 AT1G50640 48.438 64 32 1 15 78 24 86 6.66e-15 71.6
MS.gene99938.t1 AT1G43160 55.128 78 27 2 14 84 56 132 7.66e-15 70.9
MS.gene99938.t1 AT2G36450 55.263 76 29 3 19 93 15 86 8.27e-15 70.5
MS.gene99938.t1 AT2G46310 34.677 124 63 4 18 127 98 217 9.63e-15 72.0
MS.gene99938.t1 AT1G28370 49.153 59 29 1 18 76 19 76 1.32e-14 69.7
MS.gene99938.t1 AT1G12890 49.367 79 36 1 7 81 5 83 1.33e-14 70.9
MS.gene99938.t1 AT1G28370 49.153 59 29 1 18 76 57 114 1.53e-14 70.1
MS.gene99938.t1 AT5G43410 51.613 62 28 2 18 78 14 74 1.72e-14 68.2
MS.gene99938.t1 AT5G47220 51.471 68 31 2 15 81 113 179 1.87e-14 70.9
MS.gene99938.t1 AT4G17500 49.315 73 35 2 10 81 139 210 1.92e-14 70.9
MS.gene99938.t1 AT5G05410 50.000 64 31 1 19 82 79 141 2.10e-14 71.2
MS.gene99938.t1 AT5G05410 50.000 64 31 1 19 82 79 141 2.32e-14 71.6
MS.gene99938.t1 AT2G44840 50.746 67 31 2 11 76 84 149 2.52e-14 70.1
MS.gene99938.t1 AT5G07310 40.909 110 50 2 15 124 88 182 2.60e-14 70.5
MS.gene99938.t1 AT1G28360 50.000 62 30 1 15 76 8 68 4.71e-14 68.6
MS.gene99938.t1 AT1G71130 48.571 70 30 2 16 79 76 145 5.93e-14 67.8
MS.gene99938.t1 AT4G18450 45.455 66 35 1 15 79 106 171 1.13e-13 69.3
MS.gene99938.t1 AT1G12980 38.710 93 53 2 3 94 41 130 1.16e-13 69.3
MS.gene99938.t1 AT1G68550 51.724 58 28 0 16 73 110 167 1.65e-13 68.9
MS.gene99938.t1 AT1G68550 51.724 58 28 0 16 73 110 167 1.65e-13 68.9
MS.gene99938.t1 AT2G40220 52.941 68 32 0 3 70 39 106 2.74e-13 68.2
MS.gene99938.t1 AT3G23240 46.753 77 38 3 4 78 66 141 2.90e-13 67.0
MS.gene99938.t1 AT5G18450 52.542 59 27 1 19 76 34 92 3.15e-13 68.2
MS.gene99938.t1 AT5G50080 56.923 65 27 1 12 76 79 142 3.18e-13 67.0
MS.gene99938.t1 AT2G40340 51.724 58 27 1 19 76 14 70 3.47e-13 67.8
MS.gene99938.t1 AT2G40340 51.724 58 27 1 19 76 14 70 3.47e-13 67.8
MS.gene99938.t1 AT2G40340 51.724 58 27 1 19 76 14 70 3.47e-13 67.8
MS.gene99938.t1 AT1G24590 49.206 63 31 1 18 79 57 119 3.49e-13 67.8
MS.gene99938.t1 AT5G50080 56.923 65 27 1 12 76 70 133 3.72e-13 66.6
MS.gene99938.t1 AT1G22985 52.308 65 27 2 16 76 72 136 4.39e-13 65.5
MS.gene99938.t1 AT1G12630 48.837 86 42 2 1 86 1 84 5.09e-13 65.9
MS.gene99938.t1 AT2G40340 51.724 58 27 1 19 76 72 128 6.39e-13 67.0
MS.gene99938.t1 AT2G40340 51.724 58 27 1 19 76 72 128 6.65e-13 67.4
MS.gene99938.t1 AT2G40340 51.724 58 27 1 19 76 79 135 7.77e-13 67.0
MS.gene99938.t1 AT2G31230 48.485 66 32 2 14 78 81 145 8.52e-13 66.2
MS.gene99938.t1 AT2G40350 50.847 59 28 1 19 77 74 131 9.32e-13 64.7
MS.gene99938.t1 AT2G40350 50.847 59 28 1 19 77 67 124 1.01e-12 64.3
MS.gene99938.t1 AT5G13910 42.857 70 39 1 7 75 8 77 4.06e-12 63.5
MS.gene99938.t1 AT5G64750 39.216 102 48 4 26 124 192 282 4.96e-12 65.1
MS.gene99938.t1 AT1G28160 52.632 57 26 1 18 73 38 94 5.66e-12 63.9
MS.gene99938.t1 AT5G18560 49.057 53 27 0 18 70 54 106 8.13e-12 64.3
MS.gene99938.t1 AT1G53910 50.685 73 35 1 7 79 113 184 2.55e-11 62.8
MS.gene99938.t1 AT1G53910 50.685 73 35 1 7 79 113 184 2.55e-11 62.8
MS.gene99938.t1 AT1G53910 50.685 73 35 1 7 79 111 182 2.68e-11 62.8
MS.gene99938.t1 AT1G64380 41.549 142 55 5 14 143 131 256 5.66e-11 61.6
MS.gene99938.t1 AT5G52020 41.509 106 57 3 15 120 61 161 8.47e-11 60.5

Find 36 sgRNAs with CRISPR-Local

Find 43 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAACTCTTTGGATTGATTT+AGG 0.203673 5.3:-46496112 None:intergenic
TTGTTGCAGATGAACCTTTA+AGG 0.210942 5.3:-46496027 None:intergenic
GAATGAGGAGTTGGGGTTCT+TGG 0.220389 5.3:+46495903 MS.gene99938:CDS
ATAGCCATTGATTGATCATT+TGG 0.297466 5.3:-46496355 None:intergenic
AGCATTTGATCAACATGTTT+TGG 0.305858 5.3:-46496418 None:intergenic
CTCAAGTTCTTCTTGATGAT+TGG 0.318140 5.3:+46496470 MS.gene99938:CDS
GATTCTTGGTATGGATTTGA+TGG 0.332617 5.3:+46496382 MS.gene99938:CDS
AATGAGGAGTTGGGGTTCTT+GGG 0.332877 5.3:+46495904 MS.gene99938:CDS
GCATAAAAGTGCAGCATCAT+AGG 0.359571 5.3:-46496005 None:intergenic
CAATGGCTATGATGGATTCT+TGG 0.368933 5.3:+46496368 MS.gene99938:CDS
GTTATAGTTGAAGTAGGGTT+AGG 0.372480 5.3:-46496208 None:intergenic
CAGCAGCAGCAGCAACTCTT+TGG 0.382224 5.3:-46496123 None:intergenic
AGGAGTAAGAATGAGGAGTT+GGG 0.383877 5.3:+46495895 MS.gene99938:CDS
TGATCAATCAATGGCTATGA+TGG 0.388387 5.3:+46496360 MS.gene99938:CDS
GATGTTGTTATAGTTGAAGT+AGG 0.424213 5.3:-46496214 None:intergenic
ATCATCACAGCTAGTATTGT+AGG 0.433041 5.3:-46496323 None:intergenic
GTAGGGTTAGGTGGAGAAGT+TGG 0.456974 5.3:-46496196 None:intergenic
AAGGAGTAAGAATGAGGAGT+TGG 0.457971 5.3:+46495894 MS.gene99938:CDS
AATGTGAAGAACTTTCTAAA+GGG 0.459527 5.3:-46496060 None:intergenic
GATAAAGTTTGTTGTTGCAT+TGG 0.460502 5.3:-46495833 None:intergenic
GAAGGAGAAGATGACATTGA+TGG 0.466590 5.3:-46496256 None:intergenic
GGTTAGGTGGAGAAGTTGGT+GGG 0.466850 5.3:-46496192 None:intergenic
GGGTTAGGTGGAGAAGTTGG+TGG 0.496244 5.3:-46496193 None:intergenic
AAATGTGAAGAACTTTCTAA+AGG 0.498008 5.3:-46496061 None:intergenic
ATGTTGTTATAGTTGAAGTA+GGG 0.507293 5.3:-46496213 None:intergenic
GCTATGATGGATTCTTGGTA+TGG 0.509914 5.3:+46496373 MS.gene99938:CDS
ATAGTTGAAGTAGGGTTAGG+TGG 0.518721 5.3:-46496205 None:intergenic
TCAACCAAATGATCAATCAA+TGG 0.527133 5.3:+46496351 MS.gene99938:CDS
AATACAAAGGAGTAAGAATG+AGG 0.539198 5.3:+46495888 MS.gene99938:CDS
AAGAAGGTGACATTAGTTTG+TGG 0.539900 5.3:+46496497 MS.gene99938:CDS
CTTGATGATTGGTATGAAGA+AGG 0.541043 5.3:+46496481 MS.gene99938:CDS
TCATCATCAATTTGATCAGA+AGG 0.541320 5.3:-46496274 None:intergenic
CATGTTGATCAAATGCTAAG+TGG 0.548030 5.3:+46496424 MS.gene99938:CDS
GTTAGGTGGAGAAGTTGGTG+GGG 0.595703 5.3:-46496191 None:intergenic
GACATAGCAATATTCTCTTG+AGG 0.615301 5.3:-46496088 None:intergenic
GGAGTAAGAATGAGGAGTTG+GGG 0.708849 5.3:+46495896 MS.gene99938:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATCAAAAAACAAGAATA+TGG + chr5.3:46495945-46495964 MS.gene99938:CDS 20.0%
!!! CATATTCTTGTTTTTTGATT+TGG - chr5.3:46495947-46495966 None:intergenic 20.0%
! AAATGTGAAGAACTTTCTAA+AGG - chr5.3:46496064-46496083 None:intergenic 25.0%
! AATGTGAAGAACTTTCTAAA+GGG - chr5.3:46496063-46496082 None:intergenic 25.0%
! ATGTTGTTATAGTTGAAGTA+GGG - chr5.3:46496216-46496235 None:intergenic 25.0%
! CAAAAAACAAGAATATGGTT+AGG + chr5.3:46495950-46495969 MS.gene99938:CDS 25.0%
! GAGAAGAAGAAAAAATACAA+AGG + chr5.3:46495875-46495894 MS.gene99938:CDS 25.0%
!!! TTTCACTTTTTTCATCTCTT+GGG + chr5.3:46496299-46496318 MS.gene99938:CDS 25.0%
AATACAAAGGAGTAAGAATG+AGG + chr5.3:46495888-46495907 MS.gene99938:CDS 30.0%
GATGTTGTTATAGTTGAAGT+AGG - chr5.3:46496217-46496236 None:intergenic 30.0%
TCAACCAAATGATCAATCAA+TGG + chr5.3:46496351-46496370 MS.gene99938:CDS 30.0%
TCATCATCAATTTGATCAGA+AGG - chr5.3:46496277-46496296 None:intergenic 30.0%
! AGCATTTGATCAACATGTTT+TGG - chr5.3:46496421-46496440 None:intergenic 30.0%
! ATAGCCATTGATTGATCATT+TGG - chr5.3:46496358-46496377 None:intergenic 30.0%
!!! GTTTCACTTTTTTCATCTCT+TGG + chr5.3:46496298-46496317 MS.gene99938:CDS 30.0%
!!! TTCACTTTTTTCATCTCTTG+GGG + chr5.3:46496300-46496319 MS.gene99938:CDS 30.0%
ATCATCACAGCTAGTATTGT+AGG - chr5.3:46496326-46496345 None:intergenic 35.0%
CATGTTGATCAAATGCTAAG+TGG + chr5.3:46496424-46496443 MS.gene99938:CDS 35.0%
GACATAGCAATATTCTCTTG+AGG - chr5.3:46496091-46496110 None:intergenic 35.0%
GATTCTTGGTATGGATTTGA+TGG + chr5.3:46496382-46496401 MS.gene99938:CDS 35.0%
GTTATAGTTGAAGTAGGGTT+AGG - chr5.3:46496211-46496230 None:intergenic 35.0%
TGATCAATCAATGGCTATGA+TGG + chr5.3:46496360-46496379 MS.gene99938:CDS 35.0%
TTGTTGCAGATGAACCTTTA+AGG - chr5.3:46496030-46496049 None:intergenic 35.0%
! AAGAAGGTGACATTAGTTTG+TGG + chr5.3:46496497-46496516 MS.gene99938:CDS 35.0%
! CTCAAGTTCTTCTTGATGAT+TGG + chr5.3:46496470-46496489 MS.gene99938:CDS 35.0%
! CTTGATGATTGGTATGAAGA+AGG + chr5.3:46496481-46496500 MS.gene99938:CDS 35.0%
! GCAACTCTTTGGATTGATTT+AGG - chr5.3:46496115-46496134 None:intergenic 35.0%
AAGGAGTAAGAATGAGGAGT+TGG + chr5.3:46495894-46495913 MS.gene99938:CDS 40.0%
AGGAGTAAGAATGAGGAGTT+GGG + chr5.3:46495895-46495914 MS.gene99938:CDS 40.0%
ATAGTTGAAGTAGGGTTAGG+TGG - chr5.3:46496208-46496227 None:intergenic 40.0%
GAAGGAGAAGATGACATTGA+TGG - chr5.3:46496259-46496278 None:intergenic 40.0%
! GCATAAAAGTGCAGCATCAT+AGG - chr5.3:46496008-46496027 None:intergenic 40.0%
! GCTGCACTTTTATGCCTTAA+AGG + chr5.3:46496013-46496032 MS.gene99938:CDS 40.0%
!! CAATGGCTATGATGGATTCT+TGG + chr5.3:46496368-46496387 MS.gene99938:CDS 40.0%
!! GCTATGATGGATTCTTGGTA+TGG + chr5.3:46496373-46496392 MS.gene99938:CDS 40.0%
AATGAGGAGTTGGGGTTCTT+GGG + chr5.3:46495904-46495923 MS.gene99938:CDS 45.0%
GGAGTAAGAATGAGGAGTTG+GGG + chr5.3:46495896-46495915 MS.gene99938:CDS 45.0%
GAATGAGGAGTTGGGGTTCT+TGG + chr5.3:46495903-46495922 MS.gene99938:CDS 50.0%
GTAGGGTTAGGTGGAGAAGT+TGG - chr5.3:46496199-46496218 None:intergenic 50.0%
! GGTTAGGTGGAGAAGTTGGT+GGG - chr5.3:46496195-46496214 None:intergenic 50.0%
!! GTTAGGTGGAGAAGTTGGTG+GGG - chr5.3:46496194-46496213 None:intergenic 50.0%
CAGCAGCAGCAGCAACTCTT+TGG - chr5.3:46496126-46496145 None:intergenic 55.0%
GGGTTAGGTGGAGAAGTTGG+TGG - chr5.3:46496196-46496215 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 46495836 46496531 46495836 ID=MS.gene99938
chr5.3 mRNA 46495836 46496531 46495836 ID=MS.gene99938.t1;Parent=MS.gene99938
chr5.3 exon 46495836 46496531 46495836 ID=MS.gene99938.t1.exon1;Parent=MS.gene99938.t1
chr5.3 CDS 46495836 46496531 46495836 ID=cds.MS.gene99938.t1;Parent=MS.gene99938.t1
Gene Sequence

>MS.gene99938

ATGCAACAACAAACTTTATCAACAAAAGCAGCATCAAATGAGAAGAAGAAAAAATACAAAGGAGTAAGAATGAGGAGTTGGGGTTCTTGGGTTTCTGAAATAAGAGCACCAAATCAAAAAACAAGAATATGGTTAGGTTCTTATTCAACTGCAGAAGCTGCAGCAAGAGCCTATGATGCTGCACTTTTATGCCTTAAAGGTTCATCTGCAACAAATCTTAACTTCCCTTTAGAAAGTTCTTCACATTTCATTCCTCAAGAGAATATTGCTATGTCACCTAAATCAATCCAAAGAGTTGCTGCTGCTGCTGCTGCTGCTTCTTCTTCTTCTAGTAACAATGATATTACTATTAGCACCCCACCAACTTCTCCACCTAACCCTACTTCAACTATAACAACATCATCTTCATTAGTCTCATCTCCATCAATGTCATCTTCTCCTTCTGATCAAATTGATGATGATGTTTCACTTTTTTCATCTCTTGGGGCCTACAATACTAGCTGTGATGATCATTATCAACCAAATGATCAATCAATGGCTATGATGGATTCTTGGTATGGATTTGATGGTTTATTACAATCACCAAAACATGTTGATCAAATGCTAAGTGGTTCTTTGTTTGATATTGATTCAACTCAAGTTCTTCTTGATGATTGGTATGAAGAAGGTGACATTAGTTTGTGGAGCTTCTACTAA
Protein sequence

>MS.gene99938.t1

MQQQTLSTKAASNEKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSATNLNFPLESSSHFIPQENIAMSPKSIQRVAAAAAAASSSSSNNDITISTPPTSPPNPTSTITTSSSLVSSPSMSSSPSDQIDDDVSLFSSLGAYNTSCDDHYQPNDQSMAMMDSWYGFDGLLQSPKHVDQMLSGSLFDIDSTQVLLDDWYEEGDISLWSFY