Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048426.01.T01 | XP_013452188.1 | 82.812 | 128 | 15 | 1 | 1 | 121 | 1 | 128 | 7.72E-68 | 211 |
| MsG0080048426.01.T02 | XP_013452188.1 | 79.439 | 107 | 15 | 1 | 1 | 100 | 22 | 128 | 5.87E-52 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048426.01.T01 | P62929 | 38.636 | 132 | 68 | 7 | 1 | 123 | 1 | 128 | 4.07E-15 | 69.7 |
| MsG0080048426.01.T02 | P62929 | 43.75 | 64 | 35 | 1 | 40 | 102 | 65 | 128 | 2.67E-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048426.01.T01 | A0A072U9W9 | 82.812 | 128 | 15 | 1 | 1 | 121 | 1 | 128 | 3.69e-68 | 211 |
| MsG0080048426.01.T02 | A0A072U9W9 | 79.439 | 107 | 15 | 1 | 1 | 100 | 22 | 128 | 2.80e-52 | 169 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048425.01 | MsG0080048426.01 | 0.957461 | 2.567060e-115 | 8.894792e-110 |
| MsG0080048426.01 | MsG0680033014.01 | 0.858826 | 6.308226e-63 | 1.631361e-59 |
| MsG0080048426.01 | MsG0880045851.01 | 0.819045 | 1.426974e-52 | 1.086269e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048426.01.T01 | MTR_6g047880 | 82.812 | 128 | 15 | 1 | 1 | 121 | 1 | 128 | 9.35e-72 | 211 |
| MsG0080048426.01.T01 | MTR_6g047900 | 78.400 | 125 | 23 | 3 | 1 | 121 | 1 | 125 | 2.18e-63 | 189 |
| MsG0080048426.01.T01 | MTR_7g029540 | 62.810 | 121 | 38 | 3 | 1 | 114 | 1 | 121 | 8.01e-47 | 147 |
| MsG0080048426.01.T01 | MTR_7g056817 | 44.275 | 131 | 62 | 4 | 1 | 121 | 1 | 130 | 7.77e-30 | 104 |
| MsG0080048426.01.T01 | MTR_3g463570 | 48.438 | 128 | 58 | 4 | 1 | 121 | 1 | 127 | 3.99e-29 | 102 |
| MsG0080048426.01.T01 | MTR_3g067270 | 43.651 | 126 | 65 | 2 | 1 | 121 | 1 | 125 | 4.28e-28 | 100 |
| MsG0080048426.01.T01 | MTR_3g467750 | 43.651 | 126 | 65 | 2 | 1 | 121 | 1 | 125 | 4.28e-28 | 100 |
| MsG0080048426.01.T01 | MTR_3g067540 | 45.238 | 126 | 57 | 3 | 1 | 115 | 1 | 125 | 3.42e-27 | 98.2 |
| MsG0080048426.01.T01 | MTR_3g067555 | 45.238 | 126 | 57 | 3 | 1 | 115 | 1 | 125 | 3.42e-27 | 98.2 |
| MsG0080048426.01.T01 | MTR_3g067280 | 42.063 | 126 | 67 | 2 | 1 | 121 | 1 | 125 | 5.82e-27 | 97.4 |
| MsG0080048426.01.T01 | MTR_6g036620 | 42.623 | 122 | 62 | 2 | 1 | 116 | 1 | 120 | 1.02e-26 | 96.7 |
| MsG0080048426.01.T01 | MTR_1g019650 | 47.458 | 118 | 54 | 3 | 1 | 117 | 1 | 111 | 2.55e-26 | 95.1 |
| MsG0080048426.01.T01 | MTR_7g044980 | 47.059 | 119 | 52 | 5 | 1 | 113 | 1 | 114 | 2.67e-26 | 95.9 |
| MsG0080048426.01.T01 | MTR_3g067535 | 45.968 | 124 | 55 | 4 | 1 | 115 | 1 | 121 | 3.90e-26 | 95.5 |
| MsG0080048426.01.T01 | MTR_3g067437 | 42.276 | 123 | 65 | 2 | 1 | 117 | 1 | 123 | 4.57e-26 | 95.1 |
| MsG0080048426.01.T01 | MTR_3g467760 | 40.496 | 121 | 52 | 1 | 1 | 121 | 1 | 101 | 6.40e-26 | 94.0 |
| MsG0080048426.01.T01 | MTR_7g056803 | 44.615 | 130 | 62 | 4 | 1 | 121 | 1 | 129 | 8.16e-25 | 92.0 |
| MsG0080048426.01.T01 | MTR_6g017170 | 41.935 | 124 | 63 | 4 | 1 | 116 | 1 | 123 | 2.17e-24 | 90.5 |
| MsG0080048426.01.T01 | MTR_3g436100 | 40.000 | 130 | 67 | 5 | 1 | 119 | 1 | 130 | 1.19e-23 | 89.4 |
| MsG0080048426.01.T01 | MTR_3g463570 | 48.182 | 110 | 50 | 3 | 18 | 121 | 39 | 147 | 3.89e-23 | 88.2 |
| MsG0080048426.01.T01 | MTR_8g022400 | 41.600 | 125 | 62 | 6 | 1 | 116 | 1 | 123 | 2.31e-22 | 85.9 |
| MsG0080048426.01.T01 | MTR_8g022420 | 41.129 | 124 | 63 | 4 | 1 | 116 | 1 | 122 | 4.03e-22 | 85.1 |
| MsG0080048426.01.T01 | MTR_3g067510 | 41.880 | 117 | 59 | 4 | 1 | 109 | 1 | 116 | 1.39e-21 | 83.6 |
| MsG0080048426.01.T01 | MTR_3g067580 | 40.000 | 130 | 69 | 5 | 1 | 123 | 9 | 136 | 3.74e-21 | 82.8 |
| MsG0080048426.01.T01 | MTR_6g017150 | 40.000 | 130 | 67 | 4 | 1 | 121 | 1 | 128 | 9.32e-21 | 81.6 |
| MsG0080048426.01.T01 | MTR_3g067430 | 38.400 | 125 | 67 | 3 | 1 | 115 | 1 | 125 | 1.12e-20 | 81.6 |
| MsG0080048426.01.T01 | MTR_7g044920 | 38.462 | 130 | 66 | 3 | 1 | 119 | 1 | 127 | 9.32e-20 | 79.3 |
| MsG0080048426.01.T01 | MTR_3g067510 | 40.164 | 122 | 59 | 5 | 1 | 109 | 1 | 121 | 2.18e-19 | 78.2 |
| MsG0080048426.01.T01 | MTR_3g067555 | 40.708 | 113 | 55 | 3 | 14 | 115 | 1 | 112 | 8.87e-19 | 76.3 |
| MsG0080048426.01.T01 | MTR_8g022430 | 34.884 | 129 | 75 | 3 | 1 | 121 | 1 | 128 | 3.47e-18 | 75.1 |
| MsG0080048426.01.T01 | MTR_3g067445 | 38.136 | 118 | 61 | 3 | 1 | 107 | 1 | 117 | 1.89e-17 | 72.8 |
| MsG0080048426.01.T01 | MTR_3g067500 | 39.423 | 104 | 56 | 3 | 22 | 119 | 1 | 103 | 1.25e-16 | 70.5 |
| MsG0080048426.01.T01 | MTR_4g026590 | 37.500 | 136 | 72 | 3 | 1 | 123 | 1 | 136 | 1.83e-16 | 70.9 |
| MsG0080048426.01.T01 | MTR_3g067570 | 44.211 | 95 | 42 | 5 | 22 | 109 | 1 | 91 | 9.47e-16 | 67.4 |
| MsG0080048426.01.T01 | MTR_3g067550 | 40.952 | 105 | 50 | 3 | 22 | 115 | 1 | 104 | 1.06e-15 | 68.2 |
| MsG0080048426.01.T01 | MTR_3g067555 | 40.952 | 105 | 50 | 3 | 22 | 115 | 1 | 104 | 1.06e-15 | 68.2 |
| MsG0080048426.01.T01 | MTR_6g082060 | 34.848 | 132 | 75 | 2 | 1 | 121 | 1 | 132 | 6.84e-15 | 66.6 |
| MsG0080048426.01.T01 | MTR_8g461020 | 37.391 | 115 | 58 | 5 | 3 | 108 | 4 | 113 | 3.82e-14 | 64.7 |
| MsG0080048426.01.T02 | MTR_6g047880 | 79.439 | 107 | 15 | 1 | 1 | 100 | 22 | 128 | 7.11e-56 | 169 |
| MsG0080048426.01.T02 | MTR_6g047900 | 77.885 | 104 | 19 | 3 | 1 | 100 | 22 | 125 | 9.65e-51 | 156 |
| MsG0080048426.01.T02 | MTR_7g029540 | 62.245 | 98 | 32 | 2 | 1 | 93 | 24 | 121 | 2.85e-36 | 119 |
| MsG0080048426.01.T02 | MTR_3g463570 | 49.057 | 106 | 47 | 3 | 1 | 100 | 23 | 127 | 3.43e-21 | 82.0 |
| MsG0080048426.01.T02 | MTR_3g463570 | 49.057 | 106 | 47 | 3 | 1 | 100 | 43 | 147 | 7.03e-21 | 81.6 |
| MsG0080048426.01.T02 | MTR_3g067270 | 42.857 | 105 | 54 | 2 | 1 | 100 | 22 | 125 | 6.37e-19 | 76.3 |
| MsG0080048426.01.T02 | MTR_3g467750 | 42.857 | 105 | 54 | 2 | 1 | 100 | 22 | 125 | 6.37e-19 | 76.3 |
| MsG0080048426.01.T02 | MTR_7g044980 | 44.898 | 98 | 44 | 4 | 1 | 92 | 21 | 114 | 1.26e-18 | 75.5 |
| MsG0080048426.01.T02 | MTR_7g056817 | 41.818 | 110 | 53 | 4 | 1 | 100 | 22 | 130 | 1.79e-18 | 75.1 |
| MsG0080048426.01.T02 | MTR_3g067280 | 40.952 | 105 | 56 | 2 | 1 | 100 | 22 | 125 | 8.64e-18 | 73.2 |
| MsG0080048426.01.T02 | MTR_3g467760 | 46.667 | 75 | 37 | 1 | 29 | 100 | 27 | 101 | 4.30e-17 | 70.9 |
| MsG0080048426.01.T02 | MTR_3g067437 | 41.176 | 102 | 54 | 2 | 1 | 96 | 22 | 123 | 7.25e-17 | 70.5 |
| MsG0080048426.01.T02 | MTR_3g067500 | 39.423 | 104 | 56 | 3 | 1 | 98 | 1 | 103 | 1.38e-16 | 69.7 |
| MsG0080048426.01.T02 | MTR_7g056803 | 44.954 | 109 | 50 | 5 | 1 | 100 | 22 | 129 | 2.93e-16 | 69.3 |
| MsG0080048426.01.T02 | MTR_3g067570 | 44.211 | 95 | 42 | 5 | 1 | 88 | 1 | 91 | 5.51e-16 | 67.4 |
| MsG0080048426.01.T02 | MTR_6g036620 | 40.000 | 100 | 52 | 2 | 2 | 95 | 23 | 120 | 6.91e-16 | 68.2 |
| MsG0080048426.01.T02 | MTR_3g436100 | 43.056 | 72 | 40 | 1 | 28 | 98 | 59 | 130 | 7.28e-16 | 68.6 |
| MsG0080048426.01.T02 | MTR_8g022400 | 41.892 | 74 | 42 | 1 | 23 | 95 | 50 | 123 | 9.03e-16 | 68.2 |
| MsG0080048426.01.T02 | MTR_3g067550 | 40.952 | 105 | 50 | 3 | 1 | 94 | 1 | 104 | 1.03e-15 | 67.4 |
| MsG0080048426.01.T02 | MTR_3g067555 | 40.952 | 105 | 50 | 3 | 1 | 94 | 1 | 104 | 1.03e-15 | 67.4 |
| MsG0080048426.01.T02 | MTR_3g067555 | 40.952 | 105 | 50 | 3 | 1 | 94 | 9 | 112 | 1.17e-15 | 67.4 |
| MsG0080048426.01.T02 | MTR_3g067540 | 40.952 | 105 | 50 | 3 | 1 | 94 | 22 | 125 | 1.63e-15 | 67.4 |
| MsG0080048426.01.T02 | MTR_3g067555 | 40.952 | 105 | 50 | 3 | 1 | 94 | 22 | 125 | 1.63e-15 | 67.4 |
| MsG0080048426.01.T02 | MTR_6g017150 | 47.945 | 73 | 35 | 2 | 29 | 100 | 58 | 128 | 1.83e-15 | 67.4 |
| MsG0080048426.01.T02 | MTR_8g022420 | 45.205 | 73 | 39 | 1 | 23 | 94 | 49 | 121 | 1.91e-15 | 67.4 |
| MsG0080048426.01.T02 | MTR_3g067535 | 42.718 | 103 | 47 | 4 | 1 | 94 | 22 | 121 | 5.48e-15 | 65.9 |
| MsG0080048426.01.T02 | MTR_1g019650 | 43.299 | 97 | 47 | 3 | 1 | 96 | 22 | 111 | 6.56e-15 | 65.1 |
| MsG0080048426.01.T02 | MTR_6g017170 | 40.196 | 102 | 52 | 4 | 1 | 94 | 22 | 122 | 6.67e-15 | 65.5 |
| MsG0080048426.01.T02 | MTR_4g026590 | 35.965 | 114 | 61 | 2 | 1 | 102 | 23 | 136 | 9.03e-14 | 63.2 |
| MsG0080048426.01.T02 | MTR_3g067580 | 40.367 | 109 | 56 | 5 | 1 | 102 | 30 | 136 | 1.16e-13 | 62.8 |
| MsG0080048426.01.T02 | MTR_3g067510 | 41.667 | 96 | 47 | 4 | 1 | 88 | 22 | 116 | 4.27e-13 | 60.8 |
| MsG0080048426.01.T02 | MTR_3g067510 | 41.667 | 96 | 47 | 4 | 1 | 88 | 27 | 121 | 4.50e-13 | 61.2 |
| MsG0080048426.01.T02 | MTR_7g044920 | 44.262 | 61 | 34 | 0 | 38 | 98 | 67 | 127 | 7.82e-13 | 60.8 |
| MsG0080048426.01.T02 | MTR_8g022430 | 41.096 | 73 | 41 | 2 | 29 | 100 | 57 | 128 | 6.56e-12 | 58.2 |
| MsG0080048426.01.T02 | MTR_3g067430 | 36.538 | 104 | 56 | 3 | 1 | 94 | 22 | 125 | 2.29e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAGTCCTAATGTTGATTA+TGG | 0.176691 | contig313end:+80942 | MsG0080048426.01.T03:CDS |
| GCCTTGTATTTATGCTGTTT+TGG | 0.257858 | contig313end:+81376 | MsG0080048426.01.T01:three_prime_UTR |
| TGTTACATTCCTAGTAATAT+TGG | 0.278750 | contig313end:+81204 | MsG0080048426.01.T01:three_prime_UTR |
| CACAACCTACACCGCATGTT+TGG | 0.290947 | contig313end:-80788 | MsG0080048426.01.T01:intergenic |
| CTTTGGGACTGTAGATTTAG+AGG | 0.298362 | contig313end:-81012 | MsG0080048426.01.T01:intergenic |
| ATATAACTGATGCATGTAAA+TGG | 0.299952 | contig313end:+81160 | MsG0080048426.01.T01:three_prime_UTR |
| TATTAGCTTCTTGTTGCATT+AGG | 0.311703 | contig313end:-79614 | MsG0080048426.01.T01:intergenic |
| TAAGATAAGTCATTGCTTGA+TGG | 0.333220 | contig313end:-79678 | MsG0080048426.01.T01:intergenic |
| TTAAGAATTTAGATTGCATA+TGG | 0.344377 | contig313end:+81339 | MsG0080048426.01.T01:three_prime_UTR |
| AAGCATGGTCAAGAAGTCTT+TGG | 0.353291 | contig313end:-81029 | MsG0080048426.01.T01:intergenic |
| TAAATATTGAGCAGCTTGAT+TGG | 0.365290 | contig313end:-81303 | MsG0080048426.01.T01:intergenic |
| ATTATATAGTAGCAATATAT+TGG | 0.371002 | contig313end:+79546 | MsG0080048426.01.T01:five_prime_UTR |
| AGAAGCAAACCGTTGTTATC+TGG | 0.377036 | contig313end:+80746 | MsG0080048426.01.T01:CDS |
| ACAACCTACACCGCATGTTT+GGG | 0.389533 | contig313end:-80787 | MsG0080048426.01.T01:intergenic |
| AGCATGGTCAAGAAGTCTTT+GGG | 0.422192 | contig313end:-81028 | MsG0080048426.01.T01:intergenic |
| TACATGCATCAGTTATATCT+AGG | 0.427485 | contig313end:-81155 | MsG0080048426.01.T01:intergenic |
| TTGCTTCTACTTTCTTCATC+GGG | 0.430575 | contig313end:-80731 | MsG0080048426.01.T01:intergenic |
| TTTATTTCCAATCGATGAGT+TGG | 0.447311 | contig313end:+81128 | MsG0080048426.01.T01:three_prime_UTR |
| ACAAGATCTTTATATGATGC+AGG | 0.450360 | contig313end:-80834 | MsG0080048426.01.T01:intergenic |
| CACAAACCATAATCAACATT+AGG | 0.450638 | contig313end:-80948 | MsG0080048426.01.T01:intergenic |
| AAAGATCTTGTGAAGATACC+TGG | 0.482787 | contig313end:+80846 | MsG0080048426.01.T01:CDS |
| TTTGCTTCTACTTTCTTCAT+CGG | 0.487039 | contig313end:-80732 | MsG0080048426.01.T01:intergenic |
| ATCTTCTGCCTCAGATAAAG+AGG | 0.487203 | contig313end:-80976 | MsG0080048426.01.T01:intergenic |
| AGACCTTCTACTAGTGATAG+TGG | 0.494731 | contig313end:+79489 | MsG0080048426.01.T01:five_prime_UTR |
| AGGAAATCCAACTCATCGAT+TGG | 0.500191 | contig313end:-81135 | MsG0080048426.01.T01:intergenic |
| ATATTTCTGTATAATTGCTA+TGG | 0.503728 | contig313end:-79515 | MsG0080048426.01.T01:intergenic |
| TCATAACAAACAATTGTAGC+TGG | 0.509913 | contig313end:+79645 | MsG0080048426.01.T01:five_prime_UTR |
| GGTGTAGGTTGTGTTTGTTT+CGG | 0.512311 | contig313end:+80798 | MsG0080048426.01.T01:CDS |
| GCGAGAAAGAACACTGCTAA+AGG | 0.516027 | contig313end:-79709 | MsG0080048426.01.T01:intergenic |
| CAACCACTATCACTAGTAGA+AGG | 0.522858 | contig313end:-79492 | MsG0080048426.01.T01:intergenic |
| AGAGTCACACCAATATTACT+AGG | 0.531952 | contig313end:-81213 | MsG0080048426.01.T01:intergenic |
| GATTGGCTTCACGCCTAACA+TGG | 0.538221 | contig313end:-81286 | MsG0080048426.01.T01:intergenic |
| TATAACTGATGCATGTAAAT+GGG | 0.539250 | contig313end:+81161 | MsG0080048426.01.T01:three_prime_UTR |
| GTAGATGATGCATCATATCA+AGG | 0.541331 | contig313end:-81090 | MsG0080048426.01.T03:intergenic |
| GATCTTTATATGATGCAGGT+TGG | 0.554280 | contig313end:-80830 | MsG0080048426.01.T03:intergenic |
| GAATGCAAAGAGAAGGGACG+TGG | 0.558645 | contig313end:+80900 | MsG0080048426.01.T03:CDS |
| CTGATGCATGTAAATGGGTG+TGG | 0.568282 | contig313end:+81166 | MsG0080048426.01.T01:three_prime_UTR |
| TCATGTGGAATGCAAAGAGA+AGG | 0.568615 | contig313end:+80893 | MsG0080048426.01.T01:CDS |
| TGCTATTTCGTCTTATAGCG+TGG | 0.568642 | contig313end:-79467 | MsG0080048426.01.T03:intergenic |
| GTGTGTTGCCTCTTTATCTG+AGG | 0.572934 | contig313end:+80968 | MsG0080048426.01.T03:CDS |
| ACATCCCAAACATGCGGTGT+AGG | 0.582167 | contig313end:+80783 | MsG0080048426.01.T01:CDS |
| CCATAATCAACATTAGGACT+AGG | 0.583229 | contig313end:-80942 | MsG0080048426.01.T01:intergenic |
| GCCAAAACAGCATAAATACA+AGG | 0.588306 | contig313end:-81377 | MsG0080048426.01.T01:intergenic |
| AAGATCTTGTGAAGATACCT+GGG | 0.596931 | contig313end:+80847 | MsG0080048426.01.T01:CDS |
| ATATCAAGCTATCTCAAGCA+TGG | 0.614801 | contig313end:-81044 | MsG0080048426.01.T01:intergenic |
| CATGTGGAATGCAAAGAGAA+GGG | 0.628774 | contig313end:+80894 | MsG0080048426.01.T01:CDS |
| AATATATTGGCGCTAGTACG+AGG | 0.637321 | contig313end:+79559 | MsG0080048426.01.T01:five_prime_UTR |
| AATGCAAAGAGAAGGGACGT+GGG | 0.703464 | contig313end:+80901 | MsG0080048426.01.T03:CDS |
| TCAGAGACATCCCAAACATG+CGG | 0.712944 | contig313end:+80777 | MsG0080048426.01.T01:CDS |
| AACAAACAGCCAGATAACAA+CGG | 0.721899 | contig313end:-80755 | MsG0080048426.01.T03:intergenic |
| AAAACAGCATAAATACAAGG+CGG | 0.766479 | contig313end:-81374 | MsG0080048426.01.T03:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAACATATAAAAG+AGG | + | contig313end:79901-79920 | MsG0080048426.01.T01:intron | 10.0% |
| !! | AAAATAAAACATATAAAAGA+GGG | + | contig313end:79902-79921 | MsG0080048426.01.T01:intron | 10.0% |
| !! | TACTTGATAAAAAATTATTA+AGG | + | contig313end:80303-80322 | MsG0080048426.01.T01:intron | 10.0% |
| !! | ATTATATAGTAGCAATATAT+TGG | + | contig313end:79546-79565 | MsG0080048426.01.T01:five_prime_UTR | 15.0% |
| !! | GATTACTAAATTGTTAAATT+TGG | - | contig313end:80444-80463 | MsG0080048426.01.T01:intergenic | 15.0% |
| !!! | AAAAGTTTTTTCAAAATAGT+TGG | + | contig313end:80082-80101 | MsG0080048426.01.T01:intron | 15.0% |
| !!! | AACTATTTTGAAAAAACTTT+TGG | - | contig313end:80083-80102 | MsG0080048426.01.T01:intergenic | 15.0% |
| !!! | AATATTGCATATTTTATGTA+GGG | + | contig313end:80213-80232 | MsG0080048426.01.T01:intron | 15.0% |
| !!! | ACTATTTTGAAAAAACTTTT+GGG | - | contig313end:80082-80101 | MsG0080048426.01.T01:intergenic | 15.0% |
| !!! | TCTAAAATATCAACTTTAAT+TGG | + | contig313end:80686-80705 | MsG0080048426.01.T01:intron | 15.0% |
| !!! | TTTAATTTTTTTTCCATGTT+AGG | + | contig313end:81273-81292 | MsG0080048426.01.T01:three_prime_UTR | 15.0% |
| !! | TCGTTACTCTTAAATTATTT+AGG | + | contig313end:80112-80131 | MsG0080048426.01.T01:intron | 20.0% |
| !! | TTAAGAATTTAGATTGCATA+TGG | + | contig313end:81339-81358 | MsG0080048426.01.T01:three_prime_UTR | 20.0% |
| !!! | ATATTGCATATTTTATGTAG+GGG | + | contig313end:80214-80233 | MsG0080048426.01.T01:intron | 20.0% |
| !!! | ATATTTCTGTATAATTGCTA+TGG | - | contig313end:79518-79537 | MsG0080048426.01.T01:intergenic | 20.0% |
| !!! | ATGAAACTCTTTCATTTTAT+AGG | - | contig313end:80666-80685 | MsG0080048426.01.T01:intergenic | 20.0% |
| !!! | ATTTTAAATATGGAGAAATG+AGG | - | contig313end:80261-80280 | MsG0080048426.01.T01:intergenic | 20.0% |
| !!! | GAATATTGCATATTTTATGT+AGG | + | contig313end:80212-80231 | MsG0080048426.01.T01:intron | 20.0% |
| !!! | TAGAAAGGAATATTAAGTTT+TGG | + | contig313end:80348-80367 | MsG0080048426.01.T01:intron | 20.0% |
| !!! | TATTCGAGATTTAGTTTTAA+GGG | + | contig313end:81238-81257 | MsG0080048426.01.T01:three_prime_UTR | 20.0% |
| !!! | TGAAACTCTTTCATTTTATA+GGG | - | contig313end:80665-80684 | MsG0080048426.01.T01:intergenic | 20.0% |
| !!! | TTATTCGAGATTTAGTTTTA+AGG | + | contig313end:81237-81256 | MsG0080048426.01.T01:three_prime_UTR | 20.0% |
| ! | AAAATTGGAAGAAGAAAGTA+AGG | - | contig313end:80378-80397 | MsG0080048426.01.T01:intergenic | 25.0% |
| ! | AATCATAAATAATCTCTCTC+GGG | + | contig313end:79812-79831 | MsG0080048426.01.T01:intron | 25.0% |
| ! | ATATAACTGATGCATGTAAA+TGG | + | contig313end:81160-81179 | MsG0080048426.01.T01:three_prime_UTR | 25.0% |
| ! | CAATCATAAATAATCTCTCT+CGG | + | contig313end:79811-79830 | MsG0080048426.01.T01:intron | 25.0% |
| ! | CACGTTAATGGTAATAAAAA+CGG | - | contig313end:79756-79775 | MsG0080048426.01.T01:intergenic | 25.0% |
| ! | CTAACATAAGGAAACAAATT+TGG | + | contig313end:80534-80553 | MsG0080048426.01.T01:intron | 25.0% |
| ! | TATAACTGATGCATGTAAAT+GGG | + | contig313end:81161-81180 | MsG0080048426.01.T01:three_prime_UTR | 25.0% |
| ! | TGTTACATTCCTAGTAATAT+TGG | + | contig313end:81204-81223 | MsG0080048426.01.T01:three_prime_UTR | 25.0% |
| ! | TTCCTTTCTATCATAGATTT+AGG | - | contig313end:80338-80357 | MsG0080048426.01.T01:intergenic | 25.0% |
| ! | TTTCTATCATAGATTTAGGA+GGG | - | contig313end:80334-80353 | MsG0080048426.01.T01:intergenic | 25.0% |
| !! | AATTTGTTTCCTTATGTTAG+AGG | - | contig313end:80534-80553 | MsG0080048426.01.T01:intergenic | 25.0% |
| !! | TATCAAGGATGTAGATTTTA+TGG | - | contig313end:81078-81097 | MsG0080048426.01.T01:intergenic | 25.0% |
| !! | TCTTCCAATTTTTCTTTTCA+CGG | + | contig313end:80386-80405 | MsG0080048426.01.T01:intron | 25.0% |
| AAAACAGCATAAATACAAGG+CGG | - | contig313end:81377-81396 | MsG0080048426.01.T03:intergenic | 30.0% | |
| ACAAGATCTTTATATGATGC+AGG | - | contig313end:80837-80856 | MsG0080048426.01.T03:intergenic | 30.0% | |
| AGCTGCTTCAATTAAAGAAT+AGG | + | contig313end:79945-79964 | MsG0080048426.01.T01:intron | 30.0% | |
| CACAAACCATAATCAACATT+AGG | - | contig313end:80951-80970 | MsG0080048426.01.T01:intergenic | 30.0% | |
| CTCCTAAATCTATGATAGAA+AGG | + | contig313end:80333-80352 | MsG0080048426.01.T01:intron | 30.0% | |
| CTCTTCTTCTCTATTCTTAT+TGG | - | contig313end:80057-80076 | MsG0080048426.01.T01:intergenic | 30.0% | |
| CTTTCTATCATAGATTTAGG+AGG | - | contig313end:80335-80354 | MsG0080048426.01.T01:intergenic | 30.0% | |
| GTTTCCGTGAAAAGAAAAAT+TGG | - | contig313end:80393-80412 | MsG0080048426.01.T03:intergenic | 30.0% | |
| TAAATATTGAGCAGCTTGAT+TGG | - | contig313end:81306-81325 | MsG0080048426.01.T03:intergenic | 30.0% | |
| TAAGATAAGTCATTGCTTGA+TGG | - | contig313end:79681-79700 | MsG0080048426.01.T01:intergenic | 30.0% | |
| TACATGCATCAGTTATATCT+AGG | - | contig313end:81158-81177 | MsG0080048426.01.T01:intergenic | 30.0% | |
| TCAAGAAACAAAATCTACAG+TGG | + | contig313end:79872-79891 | MsG0080048426.01.T01:intron | 30.0% | |
| TCATAACAAACAATTGTAGC+TGG | + | contig313end:79645-79664 | MsG0080048426.01.T01:five_prime_UTR | 30.0% | |
| TCTTCTCTATTCTTATTGGA+GGG | - | contig313end:80053-80072 | MsG0080048426.01.T01:intergenic | 30.0% | |
| TTCTTCTCTATTCTTATTGG+AGG | - | contig313end:80054-80073 | MsG0080048426.01.T01:intergenic | 30.0% | |
| TTTATTTCCAATCGATGAGT+TGG | + | contig313end:81128-81147 | MsG0080048426.01.T01:three_prime_UTR | 30.0% | |
| TTTGCTTCTACTTTCTTCAT+CGG | - | contig313end:80735-80754 | MsG0080048426.01.T01:intergenic | 30.0% | |
| ! | CAAAAGTTAGTATTTTTCCC+AGG | - | contig313end:80867-80886 | MsG0080048426.01.T01:intergenic | 30.0% |
| ! | GAGCTCACACATTTTAAATA+TGG | - | contig313end:80271-80290 | MsG0080048426.01.T01:intergenic | 30.0% |
| ! | TATTAGCTTCTTGTTGCATT+AGG | - | contig313end:79617-79636 | MsG0080048426.01.T01:intergenic | 30.0% |
| ! | TTCTTGAAATAGTTTTTCGC+TGG | + | contig313end:79979-79998 | MsG0080048426.01.T01:intron | 30.0% |
| !! | GCTTCGTTCTAAAATATGAT+TGG | - | contig313end:79784-79803 | MsG0080048426.01.T01:intergenic | 30.0% |
| !!! | TTTTTTATCAAGTAGTCGAG+TGG | - | contig313end:80297-80316 | MsG0080048426.01.T01:intergenic | 30.0% |
| AAAGATCTTGTGAAGATACC+TGG | + | contig313end:80846-80865 | MsG0080048426.01.T01:CDS | 35.0% | |
| AACAAACAGCCAGATAACAA+CGG | - | contig313end:80758-80777 | MsG0080048426.01.T01:intergenic | 35.0% | |
| AAGATCTTGTGAAGATACCT+GGG | + | contig313end:80847-80866 | MsG0080048426.01.T01:CDS | 35.0% | |
| AGAGTCACACCAATATTACT+AGG | - | contig313end:81216-81235 | MsG0080048426.01.T01:intergenic | 35.0% | |
| ATATCAAGCTATCTCAAGCA+TGG | - | contig313end:81047-81066 | MsG0080048426.01.T01:intergenic | 35.0% | |
| CCATAATCAACATTAGGACT+AGG | - | contig313end:80945-80964 | MsG0080048426.01.T01:intergenic | 35.0% | |
| GATCTTTATATGATGCAGGT+TGG | - | contig313end:80833-80852 | MsG0080048426.01.T03:intergenic | 35.0% | |
| GCCAAAACAGCATAAATACA+AGG | - | contig313end:81380-81399 | MsG0080048426.01.T03:intergenic | 35.0% | |
| GTAGATGATGCATCATATCA+AGG | - | contig313end:81093-81112 | MsG0080048426.01.T01:intergenic | 35.0% | |
| TGATTGGAAATGCACGTTAA+TGG | - | contig313end:79768-79787 | MsG0080048426.01.T01:intergenic | 35.0% | |
| TTGCTTCTACTTTCTTCATC+GGG | - | contig313end:80734-80753 | MsG0080048426.01.T01:intergenic | 35.0% | |
| ! | CCTAGTCCTAATGTTGATTA+TGG | + | contig313end:80942-80961 | MsG0080048426.01.T03:CDS | 35.0% |
| ! | TAACTTTTGTCAGTCTCATG+TGG | + | contig313end:80878-80897 | MsG0080048426.01.T01:CDS | 35.0% |
| ! | TGCATATTTTATGTAGGGGT+TGG | + | contig313end:80218-80237 | MsG0080048426.01.T01:intron | 35.0% |
| !! | GCCTTGTATTTATGCTGTTT+TGG | + | contig313end:81376-81395 | MsG0080048426.01.T01:three_prime_UTR | 35.0% |
| AAGCATGGTCAAGAAGTCTT+TGG | - | contig313end:81032-81051 | MsG0080048426.01.T01:intergenic | 40.0% | |
| AATATATTGGCGCTAGTACG+AGG | + | contig313end:79559-79578 | MsG0080048426.01.T01:five_prime_UTR | 40.0% | |
| AGAAGCAAACCGTTGTTATC+TGG | + | contig313end:80746-80765 | MsG0080048426.01.T01:CDS | 40.0% | |
| AGACCTTCTACTAGTGATAG+TGG | + | contig313end:79489-79508 | MsG0080048426.01.T01:five_prime_UTR | 40.0% | |
| AGCATGGTCAAGAAGTCTTT+GGG | - | contig313end:81031-81050 | MsG0080048426.01.T01:intergenic | 40.0% | |
| AGCTACCATGTATGGTAAGT+GGG | - | contig313end:79929-79948 | MsG0080048426.01.T01:intergenic | 40.0% | |
| AGGAAATCCAACTCATCGAT+TGG | - | contig313end:81138-81157 | MsG0080048426.01.T01:intergenic | 40.0% | |
| ATCTTCTGCCTCAGATAAAG+AGG | - | contig313end:80979-80998 | MsG0080048426.01.T01:intergenic | 40.0% | |
| ATTGAAGCAGCTACCATGTA+TGG | - | contig313end:79937-79956 | MsG0080048426.01.T01:intergenic | 40.0% | |
| CAACCACTATCACTAGTAGA+AGG | - | contig313end:79495-79514 | MsG0080048426.01.T01:intergenic | 40.0% | |
| CATGTGGAATGCAAAGAGAA+GGG | + | contig313end:80894-80913 | MsG0080048426.01.T01:CDS | 40.0% | |
| CTATCATAGATTTAGGAGGG+TGG | - | contig313end:80331-80350 | MsG0080048426.01.T01:intergenic | 40.0% | |
| CTCTATTCTTATTGGAGGGA+GGG | - | contig313end:80049-80068 | MsG0080048426.01.T01:intergenic | 40.0% | |
| GGTGTAGGTTGTGTTTGTTT+CGG | + | contig313end:80798-80817 | MsG0080048426.01.T01:CDS | 40.0% | |
| TAACTAGCGCCTCTAACATA+AGG | + | contig313end:80522-80541 | MsG0080048426.01.T01:intron | 40.0% | |
| TCATGTGGAATGCAAAGAGA+AGG | + | contig313end:80893-80912 | MsG0080048426.01.T01:CDS | 40.0% | |
| TCTCTATTCTTATTGGAGGG+AGG | - | contig313end:80050-80069 | MsG0080048426.01.T01:intergenic | 40.0% | |
| ! | TATGGAGAAATGAGGTGTCT+CGG | - | contig313end:80253-80272 | MsG0080048426.01.T01:intergenic | 40.0% |
| !! | CTTTGGGACTGTAGATTTAG+AGG | - | contig313end:81015-81034 | MsG0080048426.01.T01:intergenic | 40.0% |
| AATGCAAAGAGAAGGGACGT+GGG | + | contig313end:80901-80920 | MsG0080048426.01.T03:CDS | 45.0% | |
| ACAACCTACACCGCATGTTT+GGG | - | contig313end:80790-80809 | MsG0080048426.01.T03:intergenic | 45.0% | |
| ATTCTTATTGGAGGGAGGGA+GGG | - | contig313end:80045-80064 | MsG0080048426.01.T01:intergenic | 45.0% | |
| CAGCTACCATGTATGGTAAG+TGG | - | contig313end:79930-79949 | MsG0080048426.01.T01:intergenic | 45.0% | |
| CTGATGCATGTAAATGGGTG+TGG | + | contig313end:81166-81185 | MsG0080048426.01.T01:three_prime_UTR | 45.0% | |
| GCGAGAAAGAACACTGCTAA+AGG | - | contig313end:79712-79731 | MsG0080048426.01.T03:intergenic | 45.0% | |
| GTGTGTTGCCTCTTTATCTG+AGG | + | contig313end:80968-80987 | MsG0080048426.01.T03:CDS | 45.0% | |
| TATTCTTATTGGAGGGAGGG+AGG | - | contig313end:80046-80065 | MsG0080048426.01.T01:intergenic | 45.0% | |
| TCAGAGACATCCCAAACATG+CGG | + | contig313end:80777-80796 | MsG0080048426.01.T01:CDS | 45.0% | |
| ! | ATGGAGAAATGAGGTGTCTC+GGG | - | contig313end:80252-80271 | MsG0080048426.01.T01:intergenic | 45.0% |
| ! | TACCGACTGAGTTAAGCTCA+CGG | - | contig313end:80191-80210 | MsG0080048426.01.T01:intergenic | 45.0% |
| ACATCCCAAACATGCGGTGT+AGG | + | contig313end:80783-80802 | MsG0080048426.01.T01:CDS | 50.0% | |
| ACCGACTGAGTTAAGCTCAC+GGG | - | contig313end:80190-80209 | MsG0080048426.01.T01:intergenic | 50.0% | |
| AGGGTCCCACTTACCATACA+TGG | + | contig313end:79921-79940 | MsG0080048426.01.T01:intron | 50.0% | |
| CAACTGAGCTAAGCTCACGA+GGG | - | contig313end:80143-80162 | MsG0080048426.01.T01:intergenic | 50.0% | |
| CACAACCTACACCGCATGTT+TGG | - | contig313end:80791-80810 | MsG0080048426.01.T01:intergenic | 50.0% | |
| GAATGCAAAGAGAAGGGACG+TGG | + | contig313end:80900-80919 | MsG0080048426.01.T03:CDS | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+TGG | - | contig313end:80017-80036 | MsG0080048426.01.T03:intergenic | 50.0% | |
| GTGAGCTTAACTCAGTCGGT+AGG | + | contig313end:80190-80209 | MsG0080048426.01.T01:intron | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+AGG | + | contig313end:80145-80164 | MsG0080048426.01.T01:intron | 50.0% | |
| TCCCGTGAGCTTAACTCAGT+CGG | + | contig313end:80186-80205 | MsG0080048426.01.T01:intron | 50.0% | |
| !! | GATTGGCTTCACGCCTAACA+TGG | - | contig313end:81289-81308 | MsG0080048426.01.T01:intergenic | 50.0% |
| CCAACTGAGCTAAGCTCACG+AGG | - | contig313end:80144-80163 | MsG0080048426.01.T01:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | contig313end:80141-80160 | MsG0080048426.01.T01:intron | 55.0% | |
| GACTGAGTTAAGCTCACGGG+AGG | - | contig313end:80187-80206 | MsG0080048426.01.T03:intergenic | 55.0% | |
| TTATTGGAGGGAGGGAGGGA+GGG | - | contig313end:80041-80060 | MsG0080048426.01.T01:intergenic | 55.0% | |
| CTTATTGGAGGGAGGGAGGG+AGG | - | contig313end:80042-80061 | MsG0080048426.01.T01:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig313end | gene | 79469 | 81472 | 79469 | ID=MsG0080048426.01;Name=MsG0080048426.01 |
| contig313end | mRNA | 79469 | 81472 | 79469 | ID=MsG0080048426.01.T01;Parent=MsG0080048426.01;Name=MsG0080048426.01.T01;_AED=0.25;_eAED=0.25;_QI=219|1|1|1|0|0|2|429|123 |
| contig313end | exon | 79469 | 79739 | 79469 | ID=MsG0080048426.01.T01:exon:15677;Parent=MsG0080048426.01.T01 |
| contig313end | exon | 80724 | 81472 | 80724 | ID=MsG0080048426.01.T01:exon:15678;Parent=MsG0080048426.01.T01 |
| contig313end | five_prime_UTR | 79469 | 79687 | 79469 | ID=MsG0080048426.01.T01:five_prime_utr;Parent=MsG0080048426.01.T01 |
| contig313end | CDS | 79688 | 79739 | 79688 | ID=MsG0080048426.01.T01:cds;Parent=MsG0080048426.01.T01 |
| contig313end | CDS | 80724 | 81043 | 80724 | ID=MsG0080048426.01.T01:cds;Parent=MsG0080048426.01.T01 |
| contig313end | three_prime_UTR | 81044 | 81472 | 81044 | ID=MsG0080048426.01.T01:three_prime_utr;Parent=MsG0080048426.01.T01 |
| contig313end | mRNA | 80735 | 81043 | 80735 | ID=MsG0080048426.01.T02;Parent=MsG0080048426.01;Name=MsG0080048426.01.T02;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|0|1|0|102 |
| contig313end | exon | 80735 | 81043 | 80735 | ID=MsG0080048426.01.T02:exon:15679;Parent=MsG0080048426.01.T02 |
| contig313end | CDS | 80735 | 81043 | 80735 | ID=MsG0080048426.01.T02:cds;Parent=MsG0080048426.01.T02 |
| contig313end | mRNA | 80895 | 81053 | 80895 | ID=MsG0080048426.01.T03;Parent=MsG0080048426.01;Name=MsG0080048426.01.T03;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|0|1|0|52 |
| contig313end | exon | 80895 | 81053 | 80895 | ID=MsG0080048426.01.T03:exon:15680;Parent=MsG0080048426.01.T03 |
| contig313end | CDS | 80895 | 81053 | 80895 | ID=MsG0080048426.01.T03:cds;Parent=MsG0080048426.01.T03 |
| Gene Sequence |
| Protein sequence |
