Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680033014.01.T01 | XP_013452188.1 | 80.833 | 120 | 16 | 1 | 14 | 126 | 18 | 137 | 6.42E-62 | 196 |
MsG0680033014.01.T02 | XP_013452188.1 | 81.034 | 116 | 15 | 1 | 1 | 109 | 22 | 137 | 5.76E-59 | 187 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680033014.01.T01 | P62929 | 47.143 | 70 | 33 | 2 | 57 | 126 | 65 | 130 | 3.13E-14 | 67.4 |
MsG0680033014.01.T02 | P62929 | 47.143 | 70 | 33 | 2 | 40 | 109 | 65 | 130 | 2.67E-14 | 67 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680033014.01.T01 | A0A072U9W9 | 80.833 | 120 | 16 | 1 | 14 | 126 | 18 | 137 | 3.07e-62 | 196 |
MsG0680033014.01.T02 | A0A072U9W9 | 81.034 | 116 | 15 | 1 | 1 | 109 | 22 | 137 | 2.75e-59 | 187 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048425.01 | MsG0680033014.01 | 0.854741 | 1.005503e-61 | 2.268227e-58 |
MsG0080048426.01 | MsG0680033014.01 | 0.858826 | 6.308226e-63 | 1.631361e-59 |
MsG0180003320.01 | MsG0680033014.01 | 0.803478 | 3.420504e-49 | 1.720650e-46 |
MsG0180004232.01 | MsG0680033014.01 | 0.812051 | 5.149910e-51 | 3.240183e-48 |
MsG0180004359.01 | MsG0680033014.01 | 0.820209 | 7.740477e-53 | 6.085989e-50 |
MsG0380014344.01 | MsG0680033014.01 | 0.822454 | 2.348286e-53 | 1.966494e-50 |
MsG0680031200.01 | MsG0680033014.01 | 0.816097 | 6.589673e-52 | 4.626277e-49 |
MsG0680033014.01 | MsG0680034974.01 | 0.833679 | 4.642963e-56 | 5.385453e-53 |
MsG0680033014.01 | MsG0780036472.01 | 0.814935 | 1.195475e-51 | 8.129512e-49 |
MsG0680033014.01 | MsG0780036649.01 | 0.802958 | 4.382228e-49 | 2.175212e-46 |
MsG0680033014.01 | MsG0780038657.01 | 0.805051 | 1.608575e-49 | 8.426210e-47 |
MsG0680033014.01 | MsG0780040615.01 | 0.815484 | 9.027845e-52 | 6.232612e-49 |
MsG0680033014.01 | MsG0880043217.01 | 0.800088 | 1.698153e-48 | 7.837159e-46 |
MsG0680033014.01 | MsG0880044001.01 | 0.813839 | 2.089121e-51 | 1.379166e-48 |
MsG0680033014.01 | MsG0880045851.01 | 0.833736 | 4.493339e-56 | 5.220916e-53 |
MsG0680033014.01 | MsG0880047460.01 | 0.818321 | 2.083849e-52 | 1.554780e-49 |
MsG0480018617.01 | MsG0680033014.01 | 0.805885 | 1.075563e-49 | 5.756093e-47 |
MsG0480019301.01 | MsG0680033014.01 | 0.803315 | 3.695998e-49 | 1.851408e-46 |
MsG0480019348.01 | MsG0680033014.01 | 0.823180 | 1.591641e-53 | 1.360497e-50 |
MsG0480020285.01 | MsG0680033014.01 | 0.812589 | 3.929457e-51 | 2.508391e-48 |
MsG0480020904.01 | MsG0680033014.01 | 0.817772 | 2.772710e-52 | 2.037881e-49 |
MsG0480021133.01 | MsG0680033014.01 | 0.824193 | 9.215686e-54 | 8.105997e-51 |
MsG0480023432.01 | MsG0680033014.01 | 0.810692 | 1.015794e-50 | 6.164855e-48 |
MsG0580024932.01 | MsG0680033014.01 | 0.823898 | 1.080909e-53 | 9.429105e-51 |
MsG0580025961.01 | MsG0680033014.01 | 0.817519 | 3.162027e-52 | 2.307919e-49 |
MsG0380015659.01 | MsG0680033014.01 | 0.820672 | 6.061178e-53 | 4.826724e-50 |
MsG0580026521.01 | MsG0680033014.01 | 0.811386 | 7.185271e-51 | 4.441565e-48 |
MsG0580027751.01 | MsG0680033014.01 | 0.817044 | 4.044149e-52 | 2.913654e-49 |
MsG0580027753.01 | MsG0680033014.01 | 0.805072 | 1.592839e-49 | 8.348193e-47 |
MsG0580029937.01 | MsG0680033014.01 | 0.817400 | 3.362924e-52 | 2.446557e-49 |
MsG0280007602.01 | MsG0680033014.01 | 0.804730 | 1.877172e-49 | 9.752767e-47 |
MsG0280009253.01 | MsG0680033014.01 | 0.814522 | 1.476401e-51 | 9.929432e-49 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680033014.01.T01 | MTR_6g047880 | 80.833 | 120 | 16 | 1 | 14 | 126 | 18 | 137 | 7.77e-66 | 196 |
MsG0680033014.01.T01 | MTR_6g047900 | 76.923 | 117 | 23 | 3 | 14 | 126 | 18 | 134 | 2.17e-59 | 179 |
MsG0680033014.01.T01 | MTR_7g029540 | 60.784 | 102 | 35 | 2 | 14 | 110 | 20 | 121 | 3.27e-38 | 125 |
MsG0680033014.01.T01 | MTR_3g463570 | 49.558 | 113 | 50 | 3 | 14 | 120 | 19 | 130 | 2.49e-25 | 93.6 |
MsG0680033014.01.T01 | MTR_3g067270 | 43.860 | 114 | 58 | 2 | 14 | 122 | 18 | 130 | 2.60e-25 | 93.2 |
MsG0680033014.01.T01 | MTR_3g467750 | 43.860 | 114 | 58 | 2 | 14 | 122 | 18 | 130 | 2.60e-25 | 93.2 |
MsG0680033014.01.T01 | MTR_3g463570 | 50.442 | 113 | 49 | 3 | 14 | 120 | 39 | 150 | 3.01e-25 | 94.0 |
MsG0680033014.01.T01 | MTR_3g067280 | 42.105 | 114 | 60 | 2 | 14 | 122 | 18 | 130 | 4.06e-24 | 90.5 |
MsG0680033014.01.T01 | MTR_7g056817 | 42.017 | 119 | 58 | 4 | 14 | 122 | 18 | 135 | 5.08e-23 | 87.4 |
MsG0680033014.01.T01 | MTR_3g467760 | 40.367 | 109 | 45 | 1 | 14 | 122 | 18 | 106 | 9.76e-23 | 86.3 |
MsG0680033014.01.T01 | MTR_6g036620 | 40.000 | 115 | 61 | 2 | 14 | 122 | 18 | 130 | 1.21e-22 | 86.7 |
MsG0680033014.01.T01 | MTR_7g044980 | 46.535 | 101 | 44 | 4 | 15 | 109 | 18 | 114 | 7.95e-22 | 84.7 |
MsG0680033014.01.T01 | MTR_3g067555 | 43.333 | 120 | 56 | 3 | 14 | 122 | 5 | 123 | 2.55e-21 | 82.8 |
MsG0680033014.01.T01 | MTR_3g067540 | 42.500 | 120 | 57 | 3 | 14 | 122 | 18 | 136 | 5.53e-21 | 82.4 |
MsG0680033014.01.T01 | MTR_3g067555 | 42.500 | 120 | 57 | 3 | 14 | 122 | 18 | 136 | 5.53e-21 | 82.4 |
MsG0680033014.01.T01 | MTR_3g067535 | 43.220 | 118 | 55 | 3 | 14 | 122 | 18 | 132 | 9.47e-21 | 81.6 |
MsG0680033014.01.T01 | MTR_7g056803 | 43.220 | 118 | 57 | 4 | 14 | 122 | 18 | 134 | 9.85e-21 | 81.6 |
MsG0680033014.01.T01 | MTR_3g067437 | 39.474 | 114 | 59 | 3 | 14 | 119 | 18 | 129 | 2.47e-20 | 80.5 |
MsG0680033014.01.T01 | MTR_3g067500 | 40.179 | 112 | 60 | 3 | 18 | 123 | 1 | 111 | 3.46e-20 | 79.7 |
MsG0680033014.01.T01 | MTR_3g067550 | 42.241 | 116 | 55 | 3 | 18 | 122 | 1 | 115 | 6.88e-19 | 76.6 |
MsG0680033014.01.T01 | MTR_3g067555 | 42.241 | 116 | 55 | 3 | 18 | 122 | 1 | 115 | 6.88e-19 | 76.6 |
MsG0680033014.01.T01 | MTR_6g017150 | 53.731 | 67 | 30 | 1 | 57 | 122 | 67 | 133 | 9.10e-19 | 76.6 |
MsG0680033014.01.T01 | MTR_1g019650 | 44.554 | 101 | 48 | 3 | 14 | 113 | 18 | 111 | 1.77e-18 | 75.1 |
MsG0680033014.01.T01 | MTR_8g022400 | 38.462 | 117 | 62 | 5 | 11 | 119 | 16 | 130 | 1.98e-18 | 75.9 |
MsG0680033014.01.T01 | MTR_3g436100 | 41.053 | 95 | 43 | 3 | 45 | 126 | 59 | 153 | 3.96e-18 | 75.5 |
MsG0680033014.01.T01 | MTR_3g067510 | 39.200 | 125 | 60 | 5 | 6 | 122 | 15 | 131 | 5.51e-18 | 74.7 |
MsG0680033014.01.T01 | MTR_3g067430 | 41.322 | 121 | 57 | 4 | 14 | 122 | 18 | 136 | 9.76e-18 | 73.9 |
MsG0680033014.01.T01 | MTR_4g026590 | 37.097 | 124 | 66 | 3 | 11 | 122 | 16 | 139 | 1.42e-17 | 73.9 |
MsG0680033014.01.T01 | MTR_7g044920 | 35.537 | 121 | 65 | 2 | 14 | 123 | 17 | 135 | 1.59e-17 | 73.9 |
MsG0680033014.01.T01 | MTR_3g067580 | 38.793 | 116 | 63 | 4 | 14 | 122 | 26 | 140 | 1.85e-17 | 73.6 |
MsG0680033014.01.T01 | MTR_3g067570 | 44.211 | 95 | 42 | 4 | 18 | 105 | 1 | 91 | 4.21e-17 | 71.2 |
MsG0680033014.01.T01 | MTR_8g022430 | 36.441 | 118 | 68 | 3 | 15 | 125 | 19 | 136 | 1.96e-16 | 70.9 |
MsG0680033014.01.T01 | MTR_8g022420 | 44.000 | 75 | 41 | 1 | 46 | 119 | 55 | 129 | 1.19e-15 | 68.6 |
MsG0680033014.01.T01 | MTR_3g067510 | 38.462 | 117 | 56 | 5 | 14 | 122 | 18 | 126 | 1.25e-15 | 68.6 |
MsG0680033014.01.T01 | MTR_6g017170 | 37.736 | 106 | 59 | 3 | 14 | 112 | 18 | 123 | 1.70e-15 | 67.8 |
MsG0680033014.01.T01 | MTR_8g461020 | 37.374 | 99 | 54 | 3 | 12 | 104 | 17 | 113 | 7.65e-13 | 61.2 |
MsG0680033014.01.T02 | MTR_6g047880 | 81.034 | 116 | 15 | 1 | 1 | 109 | 22 | 137 | 6.97e-63 | 187 |
MsG0680033014.01.T02 | MTR_6g047900 | 77.876 | 113 | 21 | 3 | 1 | 109 | 22 | 134 | 5.99e-57 | 172 |
MsG0680033014.01.T02 | MTR_7g029540 | 62.245 | 98 | 32 | 2 | 1 | 93 | 24 | 121 | 1.97e-36 | 120 |
MsG0680033014.01.T02 | MTR_3g463570 | 50.459 | 109 | 47 | 3 | 1 | 103 | 23 | 130 | 1.09e-23 | 88.6 |
MsG0680033014.01.T02 | MTR_3g067270 | 44.545 | 110 | 55 | 2 | 1 | 105 | 22 | 130 | 1.67e-23 | 88.2 |
MsG0680033014.01.T02 | MTR_3g467750 | 44.545 | 110 | 55 | 2 | 1 | 105 | 22 | 130 | 1.67e-23 | 88.2 |
MsG0680033014.01.T02 | MTR_3g463570 | 50.459 | 109 | 47 | 3 | 1 | 103 | 43 | 150 | 2.55e-23 | 88.2 |
MsG0680033014.01.T02 | MTR_3g067280 | 42.727 | 110 | 57 | 2 | 1 | 105 | 22 | 130 | 2.52e-22 | 85.1 |
MsG0680033014.01.T02 | MTR_7g056817 | 42.609 | 115 | 55 | 4 | 1 | 105 | 22 | 135 | 2.65e-21 | 82.4 |
MsG0680033014.01.T02 | MTR_3g467760 | 51.351 | 74 | 34 | 1 | 32 | 105 | 35 | 106 | 3.05e-21 | 81.6 |
MsG0680033014.01.T02 | MTR_6g036620 | 40.909 | 110 | 57 | 2 | 2 | 105 | 23 | 130 | 7.30e-21 | 81.3 |
MsG0680033014.01.T02 | MTR_3g067500 | 40.179 | 112 | 60 | 3 | 1 | 106 | 1 | 111 | 2.09e-20 | 79.7 |
MsG0680033014.01.T02 | MTR_7g044980 | 45.918 | 98 | 43 | 4 | 1 | 92 | 21 | 114 | 2.63e-20 | 80.1 |
MsG0680033014.01.T02 | MTR_7g056803 | 44.737 | 114 | 53 | 4 | 1 | 105 | 22 | 134 | 4.47e-20 | 79.3 |
MsG0680033014.01.T02 | MTR_3g067550 | 42.241 | 116 | 55 | 3 | 1 | 105 | 1 | 115 | 4.75e-19 | 76.3 |
MsG0680033014.01.T02 | MTR_3g067555 | 42.241 | 116 | 55 | 3 | 1 | 105 | 1 | 115 | 4.75e-19 | 76.3 |
MsG0680033014.01.T02 | MTR_3g067555 | 42.241 | 116 | 55 | 3 | 1 | 105 | 9 | 123 | 6.00e-19 | 76.3 |
MsG0680033014.01.T02 | MTR_6g017150 | 53.731 | 67 | 30 | 1 | 40 | 105 | 67 | 133 | 6.21e-19 | 76.6 |
MsG0680033014.01.T02 | MTR_3g067540 | 42.241 | 116 | 55 | 3 | 1 | 105 | 22 | 136 | 6.43e-19 | 76.6 |
MsG0680033014.01.T02 | MTR_3g067555 | 42.241 | 116 | 55 | 3 | 1 | 105 | 22 | 136 | 6.43e-19 | 76.6 |
MsG0680033014.01.T02 | MTR_3g067437 | 40.000 | 110 | 56 | 3 | 1 | 102 | 22 | 129 | 9.62e-19 | 75.9 |
MsG0680033014.01.T02 | MTR_3g067535 | 42.982 | 114 | 53 | 3 | 1 | 105 | 22 | 132 | 1.27e-18 | 75.5 |
MsG0680033014.01.T02 | MTR_3g436100 | 41.053 | 95 | 43 | 3 | 28 | 109 | 59 | 153 | 3.58e-18 | 75.1 |
MsG0680033014.01.T02 | MTR_3g067570 | 44.211 | 95 | 42 | 4 | 1 | 88 | 1 | 91 | 2.93e-17 | 70.9 |
MsG0680033014.01.T02 | MTR_3g067580 | 40.179 | 112 | 59 | 4 | 1 | 105 | 30 | 140 | 5.06e-17 | 71.6 |
MsG0680033014.01.T02 | MTR_8g022400 | 40.000 | 90 | 52 | 2 | 14 | 102 | 42 | 130 | 1.35e-16 | 70.5 |
MsG0680033014.01.T02 | MTR_8g022430 | 41.772 | 79 | 45 | 1 | 32 | 109 | 59 | 137 | 1.70e-16 | 70.1 |
MsG0680033014.01.T02 | MTR_1g019650 | 44.330 | 97 | 46 | 3 | 1 | 96 | 22 | 111 | 2.49e-16 | 68.9 |
MsG0680033014.01.T02 | MTR_8g022420 | 44.000 | 75 | 41 | 1 | 29 | 102 | 55 | 129 | 8.84e-16 | 68.6 |
MsG0680033014.01.T02 | MTR_3g067430 | 51.667 | 60 | 29 | 0 | 46 | 105 | 77 | 136 | 9.43e-16 | 68.2 |
MsG0680033014.01.T02 | MTR_6g017170 | 39.216 | 102 | 55 | 3 | 1 | 95 | 22 | 123 | 1.87e-15 | 67.4 |
MsG0680033014.01.T02 | MTR_7g044920 | 35.043 | 117 | 63 | 2 | 1 | 106 | 21 | 135 | 2.23e-15 | 67.8 |
MsG0680033014.01.T02 | MTR_3g067510 | 39.823 | 113 | 52 | 5 | 1 | 105 | 27 | 131 | 4.19e-15 | 66.6 |
MsG0680033014.01.T02 | MTR_3g067510 | 39.823 | 113 | 52 | 5 | 1 | 105 | 22 | 126 | 4.59e-15 | 66.2 |
MsG0680033014.01.T02 | MTR_4g026590 | 37.607 | 117 | 61 | 3 | 1 | 105 | 23 | 139 | 4.68e-15 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 27 sgRNAs with CRISPR-Local
Find 30 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTAGTCCTAATGTTGATTA+TGG | 0.176691 | 6:+54784259 | MsG0680033014.01.T01:CDS |
AGCATGGTCAAGAAGTCTTT+TGG | 0.276295 | 6:-54784346 | None:intergenic |
CACAACCTACACCGCATGTT+TGG | 0.290947 | 6:-54784105 | None:intergenic |
ACATGAGATTGACAAAAGTT+AGG | 0.309257 | 6:-54784193 | None:intergenic |
AGAAGCAAACCGTTGTTATC+TGG | 0.377036 | 6:+54784063 | MsG0680033014.01.T01:CDS |
ACAACCTACACCGCATGTTT+GGG | 0.389533 | 6:-54784104 | None:intergenic |
CATGAGATTGACAAAAGTTA+GGG | 0.391241 | 6:-54784192 | None:intergenic |
TTGCTTCTACTTTCTTCATC+GGG | 0.430575 | 6:-54784048 | None:intergenic |
CACAAACCATAATCAACATT+AGG | 0.450638 | 6:-54784265 | None:intergenic |
ACGAGATCTTTATATGATGC+AGG | 0.464587 | 6:-54784151 | None:intergenic |
TTTGCTTCTACTTTCTTCAT+CGG | 0.487039 | 6:-54784049 | None:intergenic |
ATCTTCTGCCTCAGATAAAG+AGG | 0.487203 | 6:-54784293 | None:intergenic |
GGTGTAGGTTGTGTTTGTTT+CGG | 0.512311 | 6:+54784115 | MsG0680033014.01.T01:CDS |
AAAGATCTCGTAAAGATACC+TGG | 0.512553 | 6:+54784163 | MsG0680033014.01.T01:CDS |
GAATGCAAAGAGAAGGGACG+TGG | 0.558645 | 6:+54784217 | MsG0680033014.01.T01:CDS |
TCATGTGGAATGCAAAGAGA+AGG | 0.561795 | 6:+54784210 | MsG0680033014.01.T01:CDS |
GATCTTTATATGATGCAGGT+TGG | 0.567760 | 6:-54784147 | None:intergenic |
GTGTGTTGCCTCTTTATCTG+AGG | 0.572934 | 6:+54784285 | MsG0680033014.01.T01:CDS |
ACATCCCAAACATGCGGTGT+AGG | 0.582167 | 6:+54784100 | MsG0680033014.01.T01:CDS |
CCATAATCAACATTAGGACT+AGG | 0.583229 | 6:-54784259 | None:intergenic |
AAGATCTCGTAAAGATACCT+GGG | 0.611149 | 6:+54784164 | MsG0680033014.01.T01:CDS |
ATATCAAGCTATCTCAAGCA+TGG | 0.614801 | 6:-54784362 | None:intergenic |
CATGTGGAATGCAAAGAGAA+GGG | 0.618807 | 6:+54784211 | MsG0680033014.01.T01:CDS |
AGGTTGTGTTTGTTTCGGTG+AGG | 0.634590 | 6:+54784120 | MsG0680033014.01.T01:CDS |
AATGCAAAGAGAAGGGACGT+GGG | 0.703464 | 6:+54784218 | MsG0680033014.01.T01:CDS |
TCAGAGACATCCCAAACATG+CGG | 0.712944 | 6:+54784094 | MsG0680033014.01.T01:CDS |
AACAAACAGCCAGATAACAA+CGG | 0.721899 | 6:-54784072 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
ACATGAGATTGACAAAAGTT+AGG | - | Chr6:54784196-54784215 | None:intergenic | 30.0% | |
CACAAACCATAATCAACATT+AGG | - | Chr6:54784268-54784287 | None:intergenic | 30.0% | |
CATGAGATTGACAAAAGTTA+GGG | - | Chr6:54784195-54784214 | None:intergenic | 30.0% | |
TTTGCTTCTACTTTCTTCAT+CGG | - | Chr6:54784052-54784071 | None:intergenic | 30.0% | |
! | TAACTTTTGTCAATCTCATG+TGG | + | Chr6:54784195-54784214 | MsG0680033014.01.T01:CDS | 30.0% |
AAAGATCTCGTAAAGATACC+TGG | + | Chr6:54784163-54784182 | MsG0680033014.01.T01:CDS | 35.0% | |
AACAAACAGCCAGATAACAA+CGG | - | Chr6:54784075-54784094 | None:intergenic | 35.0% | |
AAGATCTCGTAAAGATACCT+GGG | + | Chr6:54784164-54784183 | MsG0680033014.01.T01:CDS | 35.0% | |
ACGAGATCTTTATATGATGC+AGG | - | Chr6:54784154-54784173 | None:intergenic | 35.0% | |
CCATAATCAACATTAGGACT+AGG | - | Chr6:54784262-54784281 | None:intergenic | 35.0% | |
GATCTTTATATGATGCAGGT+TGG | - | Chr6:54784150-54784169 | None:intergenic | 35.0% | |
TTGCTTCTACTTTCTTCATC+GGG | - | Chr6:54784051-54784070 | None:intergenic | 35.0% | |
! | CCTAGTCCTAATGTTGATTA+TGG | + | Chr6:54784259-54784278 | MsG0680033014.01.T01:CDS | 35.0% |
!!! | TTTTGGGACTGTAGATTTAG+AGG | - | Chr6:54784332-54784351 | None:intergenic | 35.0% |
AGAAGCAAACCGTTGTTATC+TGG | + | Chr6:54784063-54784082 | MsG0680033014.01.T01:CDS | 40.0% | |
ATCTTCTGCCTCAGATAAAG+AGG | - | Chr6:54784296-54784315 | None:intergenic | 40.0% | |
CATGTGGAATGCAAAGAGAA+GGG | + | Chr6:54784211-54784230 | MsG0680033014.01.T01:CDS | 40.0% | |
GGTGTAGGTTGTGTTTGTTT+CGG | + | Chr6:54784115-54784134 | MsG0680033014.01.T01:CDS | 40.0% | |
TCATGTGGAATGCAAAGAGA+AGG | + | Chr6:54784210-54784229 | MsG0680033014.01.T01:CDS | 40.0% | |
! | AGCATGGTCAAGAAGTCTTT+TGG | - | Chr6:54784349-54784368 | None:intergenic | 40.0% |
! | CAAAAGTTAGGGTTTTTCCC+AGG | - | Chr6:54784184-54784203 | None:intergenic | 40.0% |
! | GCATGGTCAAGAAGTCTTTT+GGG | - | Chr6:54784348-54784367 | None:intergenic | 40.0% |
AATGCAAAGAGAAGGGACGT+GGG | + | Chr6:54784218-54784237 | MsG0680033014.01.T01:CDS | 45.0% | |
ACAACCTACACCGCATGTTT+GGG | - | Chr6:54784107-54784126 | None:intergenic | 45.0% | |
AGGTTGTGTTTGTTTCGGTG+AGG | + | Chr6:54784120-54784139 | MsG0680033014.01.T01:CDS | 45.0% | |
GTGTGTTGCCTCTTTATCTG+AGG | + | Chr6:54784285-54784304 | MsG0680033014.01.T01:CDS | 45.0% | |
TCAGAGACATCCCAAACATG+CGG | + | Chr6:54784094-54784113 | MsG0680033014.01.T01:CDS | 45.0% | |
ACATCCCAAACATGCGGTGT+AGG | + | Chr6:54784100-54784119 | MsG0680033014.01.T01:CDS | 50.0% | |
CACAACCTACACCGCATGTT+TGG | - | Chr6:54784108-54784127 | None:intergenic | 50.0% | |
GAATGCAAAGAGAAGGGACG+TGG | + | Chr6:54784217-54784236 | MsG0680033014.01.T01:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 54784001 | 54784381 | 54784001 | ID=MsG0680033014.01;Name=MsG0680033014.01 |
Chr6 | mRNA | 54784001 | 54784381 | 54784001 | ID=MsG0680033014.01.T01;Parent=MsG0680033014.01;Name=MsG0680033014.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|0|1|0|126 |
Chr6 | exon | 54784001 | 54784381 | 54784001 | ID=MsG0680033014.01.T01:exon:9200;Parent=MsG0680033014.01.T01 |
Chr6 | CDS | 54784001 | 54784381 | 54784001 | ID=MsG0680033014.01.T01:cds;Parent=MsG0680033014.01.T01 |
Chr6 | mRNA | 54784052 | 54784381 | 54784052 | ID=MsG0680033014.01.T02;Parent=MsG0680033014.01;Name=MsG0680033014.01.T02;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|0|1|0|109 |
Chr6 | exon | 54784052 | 54784381 | 54784052 | ID=MsG0680033014.01.T02:exon:9201;Parent=MsG0680033014.01.T02 |
Chr6 | CDS | 54784052 | 54784381 | 54784052 | ID=MsG0680033014.01.T02:cds;Parent=MsG0680033014.01.T02 |
Chr6 | mRNA | 54784212 | 54784361 | 54784212 | ID=MsG0680033014.01.T03;Parent=MsG0680033014.01;Name=MsG0680033014.01.T03;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|49 |
Chr6 | exon | 54784212 | 54784361 | 54784212 | ID=MsG0680033014.01.T03:exon:9202;Parent=MsG0680033014.01.T03 |
Chr6 | CDS | 54784212 | 54784361 | 54784212 | ID=MsG0680033014.01.T03:cds;Parent=MsG0680033014.01.T03 |
Gene Sequence |
Protein sequence |