AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048668.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048668.01.T01 MTR_4g021175 85.146 377 41 7 1 372 2 368 0.0 615
MsG0080048668.01.T01 MTR_4g021175 78.595 299 31 7 1 285 2 281 2.22e-153 434
MsG0080048668.01.T01 MTR_3g092050 58.140 344 129 4 44 382 11 344 1.38e-144 414
MsG0080048668.01.T01 MTR_0373s0010 95.918 49 2 0 97 145 1 49 7.06e-26 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048668.01.T01 AT5G41970 67.227 357 98 6 36 383 27 373 1.73e-174 491
MsG0080048668.01.T01 AT3G49320 66.077 339 102 3 48 381 22 352 6.39e-162 458
MsG0080048668.01.T01 AT3G49320 61.317 243 81 3 48 285 22 256 1.44e-99 296

Find 98 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTTCACTAATGTATTT+TGG 0.118735 contig397end:+26389 MsG0080048668.01.T01:three_prime_UTR
GCTTGCTGGCAGTGAGTTTC+TGG 0.168302 contig397end:+24442 MsG0080048668.01.T01:CDS
TGAGTATTATTCACATATTT+TGG 0.193287 contig397end:-24326 None:intergenic
AAACCTCCTCAAATCCTTTC+TGG 0.205905 contig397end:-22698 None:intergenic
GATGCAATACTGGGGCTATT+TGG 0.243144 contig397end:+22928 MsG0080048668.01.T01:CDS
CATCGTGCCATGGCGCTTGC+TGG 0.246557 contig397end:+24428 MsG0080048668.01.T01:CDS
CCAAAGCACCTTCAAAAGTT+TGG 0.266550 contig397end:-26166 None:intergenic
CAGTGCTGGTCTTGTTTATA+AGG 0.270739 contig397end:+22749 MsG0080048668.01.T01:CDS
GAAATGTTCTGCAAAATTAA+TGG 0.289764 contig397end:-26250 None:intergenic
GTGGAAATGGAATTGGAATT+TGG 0.290185 contig397end:-21061 None:intergenic
CTTCACAGTGGCGAGGTTTA+CGG 0.296003 contig397end:+26069 MsG0080048668.01.T01:CDS
GTCCATATGAGTGGATTTAT+TGG 0.303964 contig397end:+26137 MsG0080048668.01.T01:CDS
CTTGATGCTGTTCTTGATGT+TGG 0.303993 contig397end:+22636 MsG0080048668.01.T01:CDS
GTTGCTGCCCACATGACTTT+TGG 0.305811 contig397end:-21012 None:intergenic
TCAAAGGAATCTGGCATTCC+TGG 0.319752 contig397end:+26104 MsG0080048668.01.T01:CDS
TTCACAGTGGCGAGGTTTAC+GGG 0.324078 contig397end:+26070 MsG0080048668.01.T01:CDS
AGACAAACTGTTGATCCTTC+TGG 0.337162 contig397end:+24656 MsG0080048668.01.T01:CDS
TGGGGAAGTGGAAATGGAAT+TGG 0.371440 contig397end:-21068 None:intergenic
GAAATGCTTCTGCTTGTACT+TGG 0.384832 contig397end:-21088 None:intergenic
TTCACTAAGTTGAGCAGTGC+TGG 0.392356 contig397end:+22735 MsG0080048668.01.T01:CDS
AAGAGTAGGAAGGTTTAATC+TGG 0.393648 contig397end:+24358 MsG0080048668.01.T01:CDS
TCCATCACAATTGACTTTGC+TGG 0.397434 contig397end:-24620 None:intergenic
TCTTTATGATAAAATGTCAT+TGG 0.409967 contig397end:+26416 MsG0080048668.01.T01:three_prime_UTR
TCTTTCTCAGATGACTGATC+AGG 0.416980 contig397end:-24392 None:intergenic
TCATACAGAACATATTTGAT+TGG 0.417232 contig397end:-25555 None:intergenic
CGCCAATAAATCCACTCATA+TGG 0.432741 contig397end:-26139 None:intergenic
ATGCTGTTCTTGATGTTGGA+GGG 0.432940 contig397end:+22640 MsG0080048668.01.T01:CDS
CTTCATTTATTTGAGCTTGA+GGG 0.439287 contig397end:+25513 MsG0080048668.01.T01:CDS
CGTTCGCACTCGTGACCCTC+AGG 0.444103 contig397end:+21287 MsG0080048668.01.T01:CDS
TAGGAAGGTTTAATCTGGAT+TGG 0.446800 contig397end:+24363 MsG0080048668.01.T01:CDS
AAGCGCCATGGCACGATGAA+AGG 0.449177 contig397end:-24423 None:intergenic
TGTACTTGGGGAAGTGGAAA+TGG 0.450852 contig397end:-21074 None:intergenic
AAATGCTTCTGCTTGTACTT+GGG 0.452435 contig397end:-21087 None:intergenic
GACGTACTGTCAAAGGAATC+TGG 0.453062 contig397end:+26095 MsG0080048668.01.T01:CDS
AATCAAATATGTTCTGTATG+AGG 0.464982 contig397end:+25557 MsG0080048668.01.T01:CDS
AAGCAAACAGTGGCGAGTGC+AGG 0.469480 contig397end:+26001 MsG0080048668.01.T01:CDS
CTTCCGGCTCTCGAATCTAT+CGG 0.470405 contig397end:-26039 None:intergenic
TTCCATTGTGATGAAGCTCT+TGG 0.479009 contig397end:+21219 MsG0080048668.01.T01:CDS
TTGATTGATTCCATTGTCTA+CGG 0.487412 contig397end:-24285 None:intergenic
TTGTAACAAGTCAAACACTA+TGG 0.488476 contig397end:+26226 MsG0080048668.01.T01:three_prime_UTR
TTGAGAGAGGCGTGAGAAGA+CGG 0.498117 contig397end:-21171 None:intergenic
GATGCTGTTCTTGATGTTGG+AGG 0.499216 contig397end:+22639 MsG0080048668.01.T01:CDS
GGTGATGATCATAACGATCT+CGG 0.504124 contig397end:-22677 None:intergenic
TGTCTAACGCTAAAACTGCT+AGG 0.506441 contig397end:+21130 MsG0080048668.01.T01:CDS
AAAACTAAAATTTCTCCAGA+AGG 0.507002 contig397end:-24671 None:intergenic
TCTGCTTGTACTTGGGGAAG+TGG 0.508698 contig397end:-21080 None:intergenic
TTCCGGCTCTCGAATCTATC+GGG 0.512998 contig397end:-26038 None:intergenic
GTCTAACGCTAAAACTGCTA+GGG 0.515030 contig397end:+21131 MsG0080048668.01.T01:CDS
TACAGAACATATTTGATTGG+TGG 0.515183 contig397end:-25552 None:intergenic
GCTTCATTTATTTGAGCTTG+AGG 0.522279 contig397end:+25512 MsG0080048668.01.T01:CDS
ACAGAACATATTTGATTGGT+GGG 0.524467 contig397end:-25551 None:intergenic
ACAATGGAAGCTACCATTGT+GGG 0.525062 contig397end:-21205 None:intergenic
CAATACTGGGGCTATTTGGA+AGG 0.527901 contig397end:+22932 MsG0080048668.01.T01:CDS
TGCTGTTCTTGATGTTGGAG+GGG 0.529822 contig397end:+22641 MsG0080048668.01.T01:CDS
TCATCACCAGAAAGGATTTG+AGG 0.532672 contig397end:+22692 MsG0080048668.01.T01:CDS
CATTAAAGAGGCAGATGGAT+GGG 0.542297 contig397end:+26293 MsG0080048668.01.T01:three_prime_UTR
TGTGAATCTGTAGGTGTTGG+AGG 0.544652 contig397end:+22611 MsG0080048668.01.T01:intron
AACAGTTTGTCTAGCCGCAA+TGG 0.548043 contig397end:-24645 None:intergenic
CTCCCGATAGATTCGAGAGC+CGG 0.553624 contig397end:+26036 MsG0080048668.01.T01:CDS
CGTTATGATCATCACCAGAA+AGG 0.554112 contig397end:+22684 MsG0080048668.01.T01:CDS
AATGCTTCTGCTTGTACTTG+GGG 0.555227 contig397end:-21086 None:intergenic
ACTGTGAAGGTAGAGCCTTC+CGG 0.555569 contig397end:-26055 None:intergenic
GCATTAAAGAGGCAGATGGA+TGG 0.555815 contig397end:+26292 MsG0080048668.01.T01:three_prime_UTR
TGCTTTGAAGATGTAGGCAA+AGG 0.556037 contig397end:+26202 MsG0080048668.01.T01:exon
ATTAAACCTTCCTACTCTTG+AGG 0.556617 contig397end:-24354 None:intergenic
CATATGAGTGGATTTATTGG+CGG 0.560355 contig397end:+26140 MsG0080048668.01.T01:CDS
ACGGGATGACGTACTGTCAA+AGG 0.561567 contig397end:+26088 MsG0080048668.01.T01:CDS
GTGATGATCATAACGATCTC+GGG 0.561931 contig397end:-22676 None:intergenic
CACGCCTCTCTCAAGCGCGT+TGG 0.562567 contig397end:+21180 MsG0080048668.01.T01:CDS
GATTGCATTAAAGAGGCAGA+TGG 0.563253 contig397end:+26288 MsG0080048668.01.T01:three_prime_UTR
GCAATTGATGCCGTAGACAA+TGG 0.565550 contig397end:+24275 MsG0080048668.01.T01:CDS
TTCATTTATTTGAGCTTGAG+GGG 0.569903 contig397end:+25514 MsG0080048668.01.T01:CDS
TGATCATAACGATCTCGGGC+AGG 0.569953 contig397end:-22672 None:intergenic
CTTTAAATCCAAAAGTCATG+TGG 0.574345 contig397end:+21004 MsG0080048668.01.T01:exon
CGTAAACCTCGCCACTGTGA+AGG 0.574929 contig397end:-26068 None:intergenic
CTCACTGCCAGCAAGCGCCA+TGG 0.582452 contig397end:-24435 None:intergenic
AAAAGCTGCTTTGAAGATGT+AGG 0.585064 contig397end:+26196 MsG0080048668.01.T01:CDS
ATTTATCCTCAAGAGTAGGA+AGG 0.585427 contig397end:+24348 MsG0080048668.01.T01:CDS
ACCAGCAAAGTCAATTGTGA+TGG 0.591652 contig397end:+24619 MsG0080048668.01.T01:CDS
GGTACCAACGCGCTTGAGAG+AGG 0.591985 contig397end:-21184 None:intergenic
TTTAAATCCAAAAGTCATGT+GGG 0.599396 contig397end:+21005 MsG0080048668.01.T01:exon
GTGAATCTGTAGGTGTTGGA+GGG 0.600860 contig397end:+22612 MsG0080048668.01.T01:intron
CTGGGGCTATTTGGAAGGGA+AGG 0.601080 contig397end:+22937 MsG0080048668.01.T01:CDS
AGGCAGATGGATGGGAACAG+AGG 0.607315 contig397end:+26301 MsG0080048668.01.T01:three_prime_UTR
ACTCATTTATCCTCAAGAGT+AGG 0.617854 contig397end:+24344 MsG0080048668.01.T01:CDS
CACAATGGAAGCTACCATTG+TGG 0.618131 contig397end:-21206 None:intergenic
CGATAGATTCGAGAGCCGGA+AGG 0.619380 contig397end:+26040 MsG0080048668.01.T01:CDS
TCATTTATTTGAGCTTGAGG+GGG 0.619885 contig397end:+25515 MsG0080048668.01.T01:CDS
AAGCGCGTTGGTACCCACAA+TGG 0.625589 contig397end:+21192 MsG0080048668.01.T01:CDS
TGAAGCCTTTCATCGTGCCA+TGG 0.626880 contig397end:+24418 MsG0080048668.01.T01:CDS
TCACCAGAAAGGATTTGAGG+AGG 0.629775 contig397end:+22695 MsG0080048668.01.T01:CDS
AACCAAGAGCTTCATCACAA+TGG 0.641621 contig397end:-21221 None:intergenic
GCTCTACCTTCACAGTGGCG+AGG 0.646376 contig397end:+26062 MsG0080048668.01.T01:CDS
AATACTGGGGCTATTTGGAA+GGG 0.647159 contig397end:+22933 MsG0080048668.01.T01:CDS
AATTGTGATGGAGACCATTG+CGG 0.675025 contig397end:+24631 MsG0080048668.01.T01:CDS
TTTGCTTGGATGCAATACTG+GGG 0.700292 contig397end:+22920 MsG0080048668.01.T01:CDS
AGGATGAGAGAAGCAAACAG+TGG 0.752516 contig397end:+25991 MsG0080048668.01.T01:intron
GGAAGGCTCTACCTTCACAG+TGG 0.763082 contig397end:+26057 MsG0080048668.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAATATAAAAAAAATGA+AGG - contig397end:24025-24044 None:intergenic 10.0%
!! ATTAAAATATTCTAAATCTA+TGG + contig397end:25272-25291 MsG0080048668.01.T01:intron 10.0%
!!! TTCATTTAAAATTTTGAATT+AGG + contig397end:24772-24791 MsG0080048668.01.T01:intron 10.0%
!!! TTTTATGTATTAAATTATTG+TGG + contig397end:24897-24916 MsG0080048668.01.T01:intron 10.0%
!!! TTTTTCATCAAAATAATTAA+GGG - contig397end:24991-25010 None:intergenic 10.0%
!!! TTTTTTAATGATATATTGTT+GGG + contig397end:22454-22473 MsG0080048668.01.T01:intron 10.0%
!!! TTTTTTTAATGATATATTGT+TGG + contig397end:22453-22472 MsG0080048668.01.T01:intron 10.0%
!! AAAAATATCCAAAAAACAAT+TGG - contig397end:23320-23339 None:intergenic 15.0%
!! AAAACAAAAAATTCATGTTA+TGG - contig397end:26466-26485 None:intergenic 15.0%
!! AAATGGAGAAATTTAATATT+CGG - contig397end:25396-25415 None:intergenic 15.0%
!! ATATTCTTTATTGAATGATT+TGG + contig397end:24036-24055 MsG0080048668.01.T01:intron 15.0%
!! TATTCTTTATTGAATGATTT+GGG + contig397end:24037-24056 MsG0080048668.01.T01:intron 15.0%
!! TTGTAATTAACATACTTTAT+TGG + contig397end:25696-25715 MsG0080048668.01.T01:intron 15.0%
!! TTTATCTTACAGTAATAATA+GGG + contig397end:23693-23712 MsG0080048668.01.T01:intron 15.0%
!!! AAATATGGTATTTTTTTGTT+TGG + contig397end:21704-21723 MsG0080048668.01.T01:intron 15.0%
!!! AGAATATTTTAATTTTAACC+AGG - contig397end:25265-25284 None:intergenic 15.0%
!!! ATATTCTTGTTATTTATTTC+AGG + contig397end:24253-24272 MsG0080048668.01.T01:intron 15.0%
!!! CTTTTTCATCAAAATAATTA+AGG - contig397end:24992-25011 None:intergenic 15.0%
!!! GAAGTTATTTTAATCTAATT+TGG + contig397end:22843-22862 MsG0080048668.01.T01:intron 15.0%
!!! GAATAATATGATTTTTTTCT+TGG + contig397end:21613-21632 MsG0080048668.01.T01:intron 15.0%
!!! TTTTCATCAAAATAATTAAG+GGG - contig397end:24990-25009 None:intergenic 15.0%
!! AAAATTCCTTGATATTCTTA+AGG - contig397end:24505-24524 None:intergenic 20.0%
!! AAATGTCCATTACATATATT+TGG + contig397end:23450-23469 MsG0080048668.01.T01:intron 20.0%
!! AATAAAAACTACACTTATGA+AGG - contig397end:21584-21603 None:intergenic 20.0%
!! AATGGAGAAATTTAATATTC+GGG - contig397end:25395-25414 None:intergenic 20.0%
!! ATGATGAAAAAATCCAATAT+AGG + contig397end:25732-25751 MsG0080048668.01.T01:intron 20.0%
!! ATTAATTATAGAAATCTCTG+TGG - contig397end:25152-25171 None:intergenic 20.0%
!! CCTTAAAAAAGTTAATAACT+CGG - contig397end:26347-26366 None:intergenic 20.0%
!! CTTAAAAAAGTTAATAACTC+GGG - contig397end:26346-26365 None:intergenic 20.0%
!! CTTTATCTTACAGTAATAAT+AGG + contig397end:23692-23711 MsG0080048668.01.T01:intron 20.0%
!! TCAATTTCTCTAATTATTAC+TGG + contig397end:23046-23065 MsG0080048668.01.T01:intron 20.0%
!! TCTTTATGATAAAATGTCAT+TGG + contig397end:26416-26435 MsG0080048668.01.T01:three_prime_UTR 20.0%
!! TGATGAAAAAATCCAATATA+GGG + contig397end:25733-25752 MsG0080048668.01.T01:intron 20.0%
!! TGGAAAAAATAGAGAAAAAT+GGG + contig397end:21907-21926 MsG0080048668.01.T01:intron 20.0%
!!! AATATATGTAATGGACATTT+TGG - contig397end:23450-23469 None:intergenic 20.0%
!!! ACATAAGAATATTTTAGTCT+AGG - contig397end:23153-23172 None:intergenic 20.0%
!!! ATGTAATATGAAAGGTTTTA+AGG + contig397end:23176-23195 MsG0080048668.01.T01:intron 20.0%
!!! ATGTTGATAAATGTTTTAGA+AGG + contig397end:25613-25632 MsG0080048668.01.T01:intron 20.0%
!!! GAAAGATTTTAATTAGCATT+TGG - contig397end:23244-23263 None:intergenic 20.0%
!!! GATGAAATGTTAATTTTTAC+TGG + contig397end:21382-21401 MsG0080048668.01.T01:intron 20.0%
!!! TACAATTACCAATTGTTTTT+TGG + contig397end:23309-23328 MsG0080048668.01.T01:intron 20.0%
!!! TGAGTATTATTCACATATTT+TGG - contig397end:24329-24348 None:intergenic 20.0%
!!! TGTAATATGAAAGGTTTTAA+GGG + contig397end:23177-23196 MsG0080048668.01.T01:intron 20.0%
!!! TGTTTTCATTTTCTTCAATA+GGG + contig397end:25589-25608 MsG0080048668.01.T01:intron 20.0%
!!! TTCATAAGTGTAGTTTTTAT+TGG + contig397end:21583-21602 MsG0080048668.01.T01:intron 20.0%
!!! TTGTTTCATTATTTGTTGTT+GGG + contig397end:21407-21426 MsG0080048668.01.T01:intron 20.0%
!!! TTGTTTTCATTTTCTTCAAT+AGG + contig397end:25588-25607 MsG0080048668.01.T01:intron 20.0%
!!! TTTGTTTCATTATTTGTTGT+TGG + contig397end:21406-21425 MsG0080048668.01.T01:intron 20.0%
! AAAAAAATCTCAGAAACCAA+AGG - contig397end:21337-21356 None:intergenic 25.0%
! AAAAAATAGAGAAAAATGGG+AGG + contig397end:21910-21929 MsG0080048668.01.T01:intron 25.0%
! AAAAAATCTCAGAAACCAAA+GGG - contig397end:21336-21355 None:intergenic 25.0%
! AAAAATAGAGAAAAATGGGA+GGG + contig397end:21911-21930 MsG0080048668.01.T01:intron 25.0%
! AAAACTAAAATTTCTCCAGA+AGG - contig397end:24674-24693 None:intergenic 25.0%
! AAACAATGAAAAGGTAAAAC+AGG - contig397end:24542-24561 None:intergenic 25.0%
! AAACAGCCAAATATATGTAA+TGG - contig397end:23459-23478 None:intergenic 25.0%
! AAACTTCAAATCATGATTTC+AGG - contig397end:24948-24967 None:intergenic 25.0%
! AAATTAAATCCAAAAACGTG+TGG - contig397end:24107-24126 None:intergenic 25.0%
! AACAAAGCCTTAGTAAAATA+AGG + contig397end:22226-22245 MsG0080048668.01.T01:intron 25.0%
! AATCAAATATGTTCTGTATG+AGG + contig397end:25557-25576 MsG0080048668.01.T01:CDS 25.0%
! ACAAAGCCTTAGTAAAATAA+GGG + contig397end:22227-22246 MsG0080048668.01.T01:intron 25.0%
! ACCAGCACTTTATAAAATAT+AGG - contig397end:22801-22820 None:intergenic 25.0%
! GAAATGTTCTGCAAAATTAA+TGG - contig397end:26253-26272 None:intergenic 25.0%
! GAACTAAAAAATTGTATTGG+AGG + contig397end:21988-22007 MsG0080048668.01.T01:intron 25.0%
! GATTTCTATAATTAATGCGT+AGG + contig397end:25156-25175 MsG0080048668.01.T01:intron 25.0%
! GTATGTTAATTACAACAATC+TGG - contig397end:25691-25710 None:intergenic 25.0%
! GTGGAAAAAATAGAGAAAAA+TGG + contig397end:21906-21925 MsG0080048668.01.T01:intron 25.0%
! TAAAAAATTGTATTGGAGGA+GGG + contig397end:21992-22011 MsG0080048668.01.T01:intron 25.0%
! TATGTGCAATGTAATATGAA+AGG + contig397end:23168-23187 MsG0080048668.01.T01:intron 25.0%
! TCAAACAAAATGTTAGAAGA+GGG - contig397end:24734-24753 None:intergenic 25.0%
! TCATACAGAACATATTTGAT+TGG - contig397end:25558-25577 None:intergenic 25.0%
! TTCAGGATTACTTCTATAAA+TGG - contig397end:24931-24950 None:intergenic 25.0%
! TTGAAGTTTGAACAAGTATT+TGG + contig397end:24959-24978 MsG0080048668.01.T01:intron 25.0%
! TTGTTCACAAAACAATGAAA+AGG - contig397end:24551-24570 None:intergenic 25.0%
! TTTAAATCCAAAAGTCATGT+GGG + contig397end:21005-21024 MsG0080048668.01.T01:exon 25.0%
! TTTAATTAGCATTTGGTTAG+AGG - contig397end:23237-23256 None:intergenic 25.0%
! TTTGAACCTTAAGAATATCA+AGG + contig397end:24496-24515 MsG0080048668.01.T01:intron 25.0%
!! AAACTAATTTGTGAATCTGT+AGG + contig397end:22602-22621 MsG0080048668.01.T01:intron 25.0%
!! ACCTATATTTTATAAAGTGC+TGG + contig397end:22797-22816 MsG0080048668.01.T01:intron 25.0%
!! CTAATTTGGTTCAATATGAA+GGG + contig397end:22857-22876 MsG0080048668.01.T01:intron 25.0%
!! CTTTCTTCACTAATGTATTT+TGG + contig397end:26389-26408 MsG0080048668.01.T01:three_prime_UTR 25.0%
!! GTTTTATGATTGCATTAAAG+AGG + contig397end:26281-26300 MsG0080048668.01.T01:three_prime_UTR 25.0%
!! TAAGTAACTGTTTAAGATGT+TGG - contig397end:24855-24874 None:intergenic 25.0%
!! TAATTTGGTTCAATATGAAG+GGG + contig397end:22858-22877 MsG0080048668.01.T01:intron 25.0%
!! TACAAATTTTTCATTCAAGC+TGG + contig397end:25033-25052 MsG0080048668.01.T01:intron 25.0%
!! TCTAATTTGGTTCAATATGA+AGG + contig397end:22856-22875 MsG0080048668.01.T01:intron 25.0%
!!! AAAGGTTTTAAGGGTAATAA+AGG + contig397end:23186-23205 MsG0080048668.01.T01:intron 25.0%
!!! ACTTTTCAACTTTATTTGCA+TGG + contig397end:23523-23542 MsG0080048668.01.T01:intron 25.0%
!!! AGTTAGCTTAGCTTTATATA+GGG - contig397end:23726-23745 None:intergenic 25.0%
!!! ATTTTACTAAGGCTTTGTTT+GGG - contig397end:22225-22244 None:intergenic 25.0%
!!! CCGAGTTATTAACTTTTTTA+AGG + contig397end:26344-26363 MsG0080048668.01.T01:three_prime_UTR 25.0%
!!! GATTTTGTGCATTTGTTATT+TGG + contig397end:22383-22402 MsG0080048668.01.T01:intron 25.0%
!!! GTATTATTCACATATTTTGG+AGG - contig397end:24326-24345 None:intergenic 25.0%
!!! TATTTTACTAAGGCTTTGTT+TGG - contig397end:22226-22245 None:intergenic 25.0%
!!! TCATTGGTTTTTGTTTAATC+AGG + contig397end:26432-26451 MsG0080048668.01.T01:three_prime_UTR 25.0%
!!! TGAAGAGTTGTGTTTTTTAT+TGG + contig397end:21505-21524 MsG0080048668.01.T01:intron 25.0%
AAAAATCTCAGAAACCAAAG+GGG - contig397end:21335-21354 None:intergenic 30.0%
AAAATAGAGAAAAATGGGAG+GGG + contig397end:21912-21931 MsG0080048668.01.T01:intron 30.0%
AAACAAACCAATATCTCACT+GGG - contig397end:22308-22327 None:intergenic 30.0%
AACCAACAGAAACAAACTAA+TGG + contig397end:23789-23808 MsG0080048668.01.T01:intron 30.0%
ACAGAACATATTTGATTGGT+GGG - contig397end:25554-25573 None:intergenic 30.0%
ACATATATTTGGCTGTTTAC+AGG + contig397end:23461-23480 MsG0080048668.01.T01:intron 30.0%
AGTAATACCCAACGAAAATA+AGG - contig397end:25419-25438 None:intergenic 30.0%
ATAACTTTGCCTTATGTTGT+GGG + contig397end:24066-24085 MsG0080048668.01.T01:intron 30.0%
ATGAAAACAGAGTAAAGACA+GGG + contig397end:23630-23649 MsG0080048668.01.T01:intron 30.0%
ATTATATGTCCCACAACATA+AGG - contig397end:24078-24097 None:intergenic 30.0%
CTAAAAAATTGTATTGGAGG+AGG + contig397end:21991-22010 MsG0080048668.01.T01:intron 30.0%
CTTCATTTATTTGAGCTTGA+GGG + contig397end:25513-25532 MsG0080048668.01.T01:CDS 30.0%
CTTTAAATCCAAAAGTCATG+TGG + contig397end:21004-21023 MsG0080048668.01.T01:exon 30.0%
GATTATAGCCAATGAACTTA+AGG + contig397end:23411-23430 MsG0080048668.01.T01:intron 30.0%
GGGGAACTAAAAAATTGTAT+TGG + contig397end:21985-22004 MsG0080048668.01.T01:intron 30.0%
GTACATTGATATCTCAATCT+TGG + contig397end:23602-23621 MsG0080048668.01.T01:intron 30.0%
GTCAAACAAAATGTTAGAAG+AGG - contig397end:24735-24754 None:intergenic 30.0%
GTTAAAAACCTTCACTGTAA+TGG + contig397end:25203-25222 MsG0080048668.01.T01:intron 30.0%
GTTCCTATATAATAGAACGT+TGG - contig397end:25360-25379 None:intergenic 30.0%
TAAACAAACCAATATCTCAC+TGG - contig397end:22309-22328 None:intergenic 30.0%
TAATGATATATTGTTGGGAG+AGG + contig397end:22459-22478 MsG0080048668.01.T01:intron 30.0%
TACAGAACATATTTGATTGG+TGG - contig397end:25555-25574 None:intergenic 30.0%
TTCATCTACCTTAAGTTCAT+TGG - contig397end:23422-23441 None:intergenic 30.0%
TTCATTTATTTGAGCTTGAG+GGG + contig397end:25514-25533 MsG0080048668.01.T01:CDS 30.0%
TTGTAACAAGTCAAACACTA+TGG + contig397end:26226-26245 MsG0080048668.01.T01:three_prime_UTR 30.0%
! AAATTTTTCATTCAAGCTGG+TGG + contig397end:25036-25055 MsG0080048668.01.T01:intron 30.0%
! AATCTGGTATTGAACTCTAT+TGG - contig397end:25675-25694 None:intergenic 30.0%
! AATTTTTCATTCAAGCTGGT+GGG + contig397end:25037-25056 MsG0080048668.01.T01:intron 30.0%
! TTGATTGATTCCATTGTCTA+CGG - contig397end:24288-24307 None:intergenic 30.0%
!! AAAACAAAAGCACCCTATAT+TGG - contig397end:25748-25767 None:intergenic 30.0%
!! AGTGAGATATTGGTTTGTTT+AGG + contig397end:22308-22327 MsG0080048668.01.T01:intron 30.0%
!! GAGTTAGCTTAGCTTTATAT+AGG - contig397end:23727-23746 None:intergenic 30.0%
!! GTTAGCTTAGCTTTATATAG+GGG - contig397end:23725-23744 None:intergenic 30.0%
!! TCATTTGACTTGATGTGAAA+TGG + contig397end:21667-21686 MsG0080048668.01.T01:intron 30.0%
!! TTCCATTAGTTTGTTTCTGT+TGG - contig397end:23794-23813 None:intergenic 30.0%
!!! AACCAACCCTTATTTTACTA+AGG - contig397end:22236-22255 None:intergenic 30.0%
!!! ACTAATTTTGTTTTCTGCAG+TGG + contig397end:25487-25506 MsG0080048668.01.T01:intron 30.0%
!!! AGAAATTTTTTGACCAAGCA+AGG - contig397end:23554-23573 None:intergenic 30.0%
!!! GCAATTCCGATAGTTTTATT+AGG + contig397end:21767-21786 MsG0080048668.01.T01:intron 30.0%
!!! TCCATTTCCTTATTTTCGTT+GGG + contig397end:25409-25428 MsG0080048668.01.T01:intron 30.0%
!!! TCTACTATGCCTTCTTTTTT+CGG + contig397end:23367-23386 MsG0080048668.01.T01:intron 30.0%
AAAATCTCAGAAACCAAAGG+GGG - contig397end:21334-21353 None:intergenic 35.0%
AAATGCTTCTGCTTGTACTT+GGG - contig397end:21090-21109 None:intergenic 35.0%
AAGAGTAGGAAGGTTTAATC+TGG + contig397end:24358-24377 MsG0080048668.01.T01:CDS 35.0%
AATACAAAACCCTCCTCATT+TGG + contig397end:21963-21982 MsG0080048668.01.T01:intron 35.0%
AATTAGCATTTGGTTAGAGG+AGG - contig397end:23234-23253 None:intergenic 35.0%
ACAGAAGAATTCACACTGTT+TGG - contig397end:23284-23303 None:intergenic 35.0%
ACCCAACGAAAATAAGGAAA+TGG - contig397end:25413-25432 None:intergenic 35.0%
ACTCATTTATCCTCAAGAGT+AGG + contig397end:24344-24363 MsG0080048668.01.T01:CDS 35.0%
AGCAAGAATAATCAACTCAC+AGG - contig397end:24710-24729 None:intergenic 35.0%
AGCCTTAGTAAAATAAGGGT+TGG + contig397end:22231-22250 MsG0080048668.01.T01:intron 35.0%
ATACAAAACCCTCCTCATTT+GGG + contig397end:21964-21983 MsG0080048668.01.T01:intron 35.0%
ATATGGACAAAAACACAACC+AGG - contig397end:26125-26144 None:intergenic 35.0%
ATCCAAGCAAAAATTGACTG+AGG - contig397end:22911-22930 None:intergenic 35.0%
ATTAAACCTTCCTACTCTTG+AGG - contig397end:24357-24376 None:intergenic 35.0%
ATTAGCATTTGGTTAGAGGA+GGG - contig397end:23233-23252 None:intergenic 35.0%
ATTTATCCTCAAGAGTAGGA+AGG + contig397end:24348-24367 MsG0080048668.01.T01:CDS 35.0%
ATTTGGTTGCTGAGAAAATG+TGG + contig397end:22400-22419 MsG0080048668.01.T01:intron 35.0%
ATTTGTGAATCTGTAGGTGT+TGG + contig397end:22608-22627 MsG0080048668.01.T01:intron 35.0%
CAATGTTCAGCTTCATTCAA+TGG - contig397end:22547-22566 None:intergenic 35.0%
CAGCGACCTAATAAAACTAT+CGG - contig397end:21776-21795 None:intergenic 35.0%
CATGAAAACAGAGTAAAGAC+AGG + contig397end:23629-23648 MsG0080048668.01.T01:intron 35.0%
GATAACTTTGCCTTATGTTG+TGG + contig397end:24065-24084 MsG0080048668.01.T01:intron 35.0%
GCTTCATTTATTTGAGCTTG+AGG + contig397end:25512-25531 MsG0080048668.01.T01:CDS 35.0%
GGACCAACGTTCTATTATAT+AGG + contig397end:25354-25373 MsG0080048668.01.T01:intron 35.0%
GGTTGAAGTGAAATAAAGGA+GGG + contig397end:22818-22837 MsG0080048668.01.T01:intron 35.0%
GTGGAAATGGAATTGGAATT+TGG - contig397end:21064-21083 None:intergenic 35.0%
GTTGGGTATTACTGTATTAG+CGG + contig397end:25426-25445 MsG0080048668.01.T01:intron 35.0%
TAGGAAGGTTTAATCTGGAT+TGG + contig397end:24363-24382 MsG0080048668.01.T01:CDS 35.0%
TAGGTTCTCTCAGAATATCT+TGG - contig397end:23924-23943 None:intergenic 35.0%
TCACCACAAAACAACCTTAA+TGG - contig397end:25890-25909 None:intergenic 35.0%
TCATTTATTTGAGCTTGAGG+GGG + contig397end:25515-25534 MsG0080048668.01.T01:CDS 35.0%
TGAAACACTAACATACACAC+CGG - contig397end:23101-23120 None:intergenic 35.0%
TGCTGAGAAAATGTGGATAA+GGG + contig397end:22407-22426 MsG0080048668.01.T01:intron 35.0%
TGGTTGAAGTGAAATAAAGG+AGG + contig397end:22817-22836 MsG0080048668.01.T01:intron 35.0%
TTAAAACAGAGTCTCTTGCT+TGG + contig397end:23580-23599 MsG0080048668.01.T01:intron 35.0%
TTGCTGAGAAAATGTGGATA+AGG + contig397end:22406-22425 MsG0080048668.01.T01:intron 35.0%
TTTAGAAGGTCCACTAAGTT+GGG + contig397end:25627-25646 MsG0080048668.01.T01:intron 35.0%
! AAACAAAGCCTAAGTGGATT+CGG - contig397end:21834-21853 None:intergenic 35.0%
! AAAGGATTTGAGGAGGTTTT+TGG + contig397end:22702-22721 MsG0080048668.01.T01:CDS 35.0%
! AATTGAGAACCACACGTTTT+TGG + contig397end:24095-24114 MsG0080048668.01.T01:intron 35.0%
! ATTCACACTGTTTGGTTCAA+AGG - contig397end:23276-23295 None:intergenic 35.0%
! ATTTTCCAACTGCACCATTA+AGG + contig397end:25873-25892 MsG0080048668.01.T01:intron 35.0%
! CAGTGTGAATTCTTCTGTTT+TGG + contig397end:23286-23305 MsG0080048668.01.T01:intron 35.0%
! CATATGAGTGGATTTATTGG+CGG + contig397end:26140-26159 MsG0080048668.01.T01:CDS 35.0%
! CTGACTATTTTCTTACTTCC+TGG + contig397end:25244-25263 MsG0080048668.01.T01:intron 35.0%
! CTTTTCTCAATATTCTCTGC+AGG + contig397end:25971-25990 MsG0080048668.01.T01:intron 35.0%
! GTCCATATGAGTGGATTTAT+TGG + contig397end:26137-26156 MsG0080048668.01.T01:CDS 35.0%
! TGCTGGTTGAAGTGAAATAA+AGG + contig397end:22814-22833 MsG0080048668.01.T01:intron 35.0%
! TTTTGCTTGGATGCAATACT+GGG + contig397end:22919-22938 MsG0080048668.01.T01:CDS 35.0%
! TTTTTGCTTGGATGCAATAC+TGG + contig397end:22918-22937 MsG0080048668.01.T01:CDS 35.0%
!! AAAAGCTGCTTTGAAGATGT+AGG + contig397end:26196-26215 MsG0080048668.01.T01:CDS 35.0%
!! ATTAAGTTGAGCAAATGCAG+AGG - contig397end:25832-25851 None:intergenic 35.0%
!! CAGTCTGTTGATAGTCATAT+TGG - contig397end:25300-25319 None:intergenic 35.0%
!! CCATTCTAGGACAAAAACAA+CGG - contig397end:25326-25345 None:intergenic 35.0%
!! GAGATATTGGTTTGTTTAGG+AGG + contig397end:22311-22330 MsG0080048668.01.T01:intron 35.0%
!! TATTCACATATTTTGGAGGC+TGG - contig397end:24322-24341 None:intergenic 35.0%
!! TGTGTTTTTGTCCATATGAG+TGG + contig397end:26128-26147 MsG0080048668.01.T01:CDS 35.0%
!! TTTTAGAAGGTCCACTAAGT+TGG + contig397end:25626-25645 MsG0080048668.01.T01:intron 35.0%
!! TTTTTCGGTGTGTAGCATTT+TGG + contig397end:23382-23401 MsG0080048668.01.T01:intron 35.0%
!!! CTCCATTTCCTTATTTTCGT+TGG + contig397end:25408-25427 MsG0080048668.01.T01:intron 35.0%
!!! TTTTTTAGTTCCCCCAAATG+AGG - contig397end:21979-21998 None:intergenic 35.0%
AAACCTCCTCAAATCCTTTC+TGG - contig397end:22701-22720 None:intergenic 40.0%
AAAGACAGGGAGAATTGAAG+AGG + contig397end:23643-23662 MsG0080048668.01.T01:intron 40.0%
AACAACCTTAATGGTGCAGT+TGG - contig397end:25881-25900 None:intergenic 40.0%
AACCAAGAGCTTCATCACAA+TGG - contig397end:21224-21243 None:intergenic 40.0%
AATACTGGGGCTATTTGGAA+GGG + contig397end:22933-22952 MsG0080048668.01.T01:CDS 40.0%
AATCAAGAACAACCAGTCAC+AGG - contig397end:25123-25142 None:intergenic 40.0%
AATGCTTCTGCTTGTACTTG+GGG - contig397end:21089-21108 None:intergenic 40.0%
ACAATGGAAGCTACCATTGT+GGG - contig397end:21208-21227 None:intergenic 40.0%
ACCAGCAAAGTCAATTGTGA+TGG + contig397end:24619-24638 MsG0080048668.01.T01:CDS 40.0%
AGACAAACTGTTGATCCTTC+TGG + contig397end:24656-24675 MsG0080048668.01.T01:CDS 40.0%
ATGAAAACGAACACTCTGCA+AGG - contig397end:24585-24604 None:intergenic 40.0%
ATGAAGGGGAGGGTAATATA+GGG + contig397end:22872-22891 MsG0080048668.01.T01:intron 40.0%
ATGCTGTTCTTGATGTTGGA+GGG + contig397end:22640-22659 MsG0080048668.01.T01:CDS 40.0%
ATTCCCAATCTGCATTAGTG+TGG + contig397end:23839-23858 MsG0080048668.01.T01:intron 40.0%
CATTAAAGAGGCAGATGGAT+GGG + contig397end:26293-26312 MsG0080048668.01.T01:three_prime_UTR 40.0%
CGCCAATAAATCCACTCATA+TGG - contig397end:26142-26161 None:intergenic 40.0%
CGTTATGATCATCACCAGAA+AGG + contig397end:22684-22703 MsG0080048668.01.T01:CDS 40.0%
CTTGATGCTGTTCTTGATGT+TGG + contig397end:22636-22655 MsG0080048668.01.T01:CDS 40.0%
GAAATGCTTCTGCTTGTACT+TGG - contig397end:21091-21110 None:intergenic 40.0%
GAACATAGCCATTACAGTGA+AGG - contig397end:25214-25233 None:intergenic 40.0%
GATTGCATTAAAGAGGCAGA+TGG + contig397end:26288-26307 MsG0080048668.01.T01:three_prime_UTR 40.0%
GGAAAAAAGGAATGAGCAAG+TGG + contig397end:21887-21906 MsG0080048668.01.T01:intron 40.0%
GGTGATGATCATAACGATCT+CGG - contig397end:22680-22699 None:intergenic 40.0%
GTCTAACGCTAAAACTGCTA+GGG + contig397end:21131-21150 MsG0080048668.01.T01:CDS 40.0%
GTGATGATCATAACGATCTC+GGG - contig397end:22679-22698 None:intergenic 40.0%
TACAAAACCCTCCTCATTTG+GGG + contig397end:21965-21984 MsG0080048668.01.T01:intron 40.0%
TATGAAGGGGAGGGTAATAT+AGG + contig397end:22871-22890 MsG0080048668.01.T01:intron 40.0%
TCATCACCAGAAAGGATTTG+AGG + contig397end:22692-22711 MsG0080048668.01.T01:CDS 40.0%
TCTTTCTCAGATGACTGATC+AGG - contig397end:24395-24414 None:intergenic 40.0%
TGAAAACGAACACTCTGCAA+GGG - contig397end:24584-24603 None:intergenic 40.0%
TGAGAAAATGTGGATAAGGG+TGG + contig397end:22410-22429 MsG0080048668.01.T01:intron 40.0%
TGCGTAGGAAAACAACATCA+TGG + contig397end:25171-25190 MsG0080048668.01.T01:intron 40.0%
TGCTACACACCGAAAAAAGA+AGG - contig397end:23379-23398 None:intergenic 40.0%
TGTCCTAGAATGGTCATCTT+GGG + contig397end:25333-25352 MsG0080048668.01.T01:intron 40.0%
TGTCTAACGCTAAAACTGCT+AGG + contig397end:21130-21149 MsG0080048668.01.T01:CDS 40.0%
TTAGCATTTGGTTAGAGGAG+GGG - contig397end:23232-23251 None:intergenic 40.0%
TTAGTGTGGGTCTGAGAATT+AGG + contig397end:23853-23872 MsG0080048668.01.T01:intron 40.0%
TTATTAGGTCGCTGACGAAA+TGG + contig397end:21782-21801 MsG0080048668.01.T01:intron 40.0%
TTCCATTGTGATGAAGCTCT+TGG + contig397end:21219-21238 MsG0080048668.01.T01:CDS 40.0%
TTCCCAATCTGCATTAGTGT+GGG + contig397end:23840-23859 MsG0080048668.01.T01:intron 40.0%
TTGGTTCAATATGAAGGGGA+GGG + contig397end:22862-22881 MsG0080048668.01.T01:intron 40.0%
TTGTCCTAGAATGGTCATCT+TGG + contig397end:25332-25351 MsG0080048668.01.T01:intron 40.0%
TTTGCTTGGATGCAATACTG+GGG + contig397end:22920-22939 MsG0080048668.01.T01:CDS 40.0%
! AATTGTGATGGAGACCATTG+CGG + contig397end:24631-24650 MsG0080048668.01.T01:CDS 40.0%
! ACACTGTTTGGTTCAAAGGA+GGG - contig397end:23272-23291 None:intergenic 40.0%
! ATTGTATTGGAGGAGGGTTT+TGG + contig397end:21998-22017 MsG0080048668.01.T01:intron 40.0%
! CACTAATCAGCCACTTTAAG+AGG - contig397end:24180-24199 None:intergenic 40.0%
! CCAAAGCACCTTCAAAAGTT+TGG - contig397end:26169-26188 None:intergenic 40.0%
! GTCCTCAGTCAATTTTTGCT+TGG + contig397end:22906-22925 MsG0080048668.01.T01:CDS 40.0%
! GTGTTGTTGCTGAGGAAATA+TGG + contig397end:21689-21708 MsG0080048668.01.T01:intron 40.0%
! TCCATCACAATTGACTTTGC+TGG - contig397end:24623-24642 None:intergenic 40.0%
! TTCGTTTTCATGTGAACTCG+TGG + contig397end:24594-24613 MsG0080048668.01.T01:CDS 40.0%
! TTGAGGGGTGCAAAATATGA+GGG - contig397end:22174-22193 None:intergenic 40.0%
! TTGCTGCTGGTGTTTCTTTT+TGG + contig397end:22501-22520 MsG0080048668.01.T01:intron 40.0%
! TTGTATTGGAGGAGGGTTTT+GGG + contig397end:21999-22018 MsG0080048668.01.T01:intron 40.0%
! TTTGAGGGGTGCAAAATATG+AGG - contig397end:22175-22194 None:intergenic 40.0%
! TTTGATAATCGCCTGCAGAA+TGG + contig397end:24124-24143 MsG0080048668.01.T01:intron 40.0%
! TTTGGTTCAATATGAAGGGG+AGG + contig397end:22861-22880 MsG0080048668.01.T01:intron 40.0%
!! CAGTGCTGGTCTTGTTTATA+AGG + contig397end:22749-22768 MsG0080048668.01.T01:CDS 40.0%
!! GCACCATTAAGGTTGTTTTG+TGG + contig397end:25884-25903 MsG0080048668.01.T01:intron 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG - contig397end:22218-22237 None:intergenic 40.0%
!! TCGCTCACTGACTTACTAAT+GGG + contig397end:23960-23979 MsG0080048668.01.T01:intron 40.0%
!! TGCTTTGAAGATGTAGGCAA+AGG + contig397end:26202-26221 MsG0080048668.01.T01:exon 40.0%
!! TTAGGCTTTGTTTGCGAGTT+TGG + contig397end:21841-21860 MsG0080048668.01.T01:intron 40.0%
!!! CCAAACTTTTGAAGGTGCTT+TGG + contig397end:26166-26185 MsG0080048668.01.T01:CDS 40.0%
!!! CCGTTGTTTTTGTCCTAGAA+TGG + contig397end:25323-25342 MsG0080048668.01.T01:intron 40.0%
!!! GGCTTCTATTGGCTTTGTTT+TGG + contig397end:25648-25667 MsG0080048668.01.T01:intron 40.0%
!!! TGATGTTTTTAGCTTGCTGC+TGG + contig397end:22488-22507 MsG0080048668.01.T01:intron 40.0%
!!! TTTGAGGAGGTTTTTGGTCA+CGG + contig397end:22708-22727 MsG0080048668.01.T01:CDS 40.0%
AAACCAAAGGGGGTTGAGAA+GGG - contig397end:21324-21343 None:intergenic 45.0%
AACAGTTTGTCTAGCCGCAA+TGG - contig397end:24648-24667 None:intergenic 45.0%
AACTGTCAGCTGTCAGATAG+TGG + contig397end:23762-23781 MsG0080048668.01.T01:intron 45.0%
ACAAAACCCTCCTCATTTGG+GGG + contig397end:21966-21985 MsG0080048668.01.T01:intron 45.0%
ACTCGCAAACAAAGCCTAAG+TGG - contig397end:21840-21859 None:intergenic 45.0%
AGAATGGCTTAGGGGAATAC+TGG + contig397end:24140-24159 MsG0080048668.01.T01:intron 45.0%
AGACCCACACTAATGCAGAT+TGG - contig397end:23846-23865 None:intergenic 45.0%
AGCGGCATTGTACTAAGTAC+TGG + contig397end:25444-25463 MsG0080048668.01.T01:intron 45.0%
AGGATGAGAGAAGCAAACAG+TGG + contig397end:25991-26010 MsG0080048668.01.T01:intron 45.0%
ATAGAGAAAAATGGGAGGGG+AGG + contig397end:21915-21934 MsG0080048668.01.T01:intron 45.0%
CAATACTGGGGCTATTTGGA+AGG + contig397end:22932-22951 MsG0080048668.01.T01:CDS 45.0%
CACAATGGAAGCTACCATTG+TGG - contig397end:21209-21228 None:intergenic 45.0%
CCAATAGAAGCCCAACTTAG+TGG - contig397end:25640-25659 None:intergenic 45.0%
CTGACAGCTGACAGTTAGTA+AGG - contig397end:23758-23777 None:intergenic 45.0%
GACCCACACTAATGCAGATT+GGG - contig397end:23845-23864 None:intergenic 45.0%
GACGTACTGTCAAAGGAATC+TGG + contig397end:26095-26114 MsG0080048668.01.T01:CDS 45.0%
GATGCAATACTGGGGCTATT+TGG + contig397end:22928-22947 MsG0080048668.01.T01:CDS 45.0%
GATGCTGTTCTTGATGTTGG+AGG + contig397end:22639-22658 MsG0080048668.01.T01:CDS 45.0%
GCAATTGATGCCGTAGACAA+TGG + contig397end:24275-24294 MsG0080048668.01.T01:CDS 45.0%
GCATTAAAGAGGCAGATGGA+TGG + contig397end:26292-26311 MsG0080048668.01.T01:three_prime_UTR 45.0%
GTGGGTCTGAGAATTAGGAT+AGG + contig397end:23858-23877 MsG0080048668.01.T01:intron 45.0%
GTTCGTTGGTCCTCTTAAAG+TGG + contig397end:24167-24186 MsG0080048668.01.T01:intron 45.0%
TAACTGTTACTGCCTGTGAC+TGG + contig397end:25108-25127 MsG0080048668.01.T01:intron 45.0%
TAGAGAAAAATGGGAGGGGA+GGG + contig397end:21916-21935 MsG0080048668.01.T01:intron 45.0%
TCAAAGGAATCTGGCATTCC+TGG + contig397end:26104-26123 MsG0080048668.01.T01:CDS 45.0%
TCACCAGAAAGGATTTGAGG+AGG + contig397end:22695-22714 MsG0080048668.01.T01:CDS 45.0%
TGAAGGGGAGGGTAATATAG+GGG + contig397end:22873-22892 MsG0080048668.01.T01:intron 45.0%
TGAGCAACCCAGTGAGATAT+TGG + contig397end:22298-22317 MsG0080048668.01.T01:intron 45.0%
TGCTGTTCTTGATGTTGGAG+GGG + contig397end:22641-22660 MsG0080048668.01.T01:CDS 45.0%
TGGGGAAGTGGAAATGGAAT+TGG - contig397end:21071-21090 None:intergenic 45.0%
TGTACTTGGGGAAGTGGAAA+TGG - contig397end:21077-21096 None:intergenic 45.0%
TGTTTACAGGAGCTTCATGG+AGG + contig397end:23474-23493 MsG0080048668.01.T01:intron 45.0%
TTAGTTCCCCCAAATGAGGA+GGG - contig397end:21975-21994 None:intergenic 45.0%
TTGCATGGTAGTACCTTGCT+TGG + contig397end:23538-23557 MsG0080048668.01.T01:intron 45.0%
! AAGGGAAGGAAAGGCTTTGA+GGG - contig397end:22190-22209 None:intergenic 45.0%
! AAGTCAGTGAGCGAGTTTTG+CGG - contig397end:23954-23973 None:intergenic 45.0%
! CACACTGTTTGGTTCAAAGG+AGG - contig397end:23273-23292 None:intergenic 45.0%
! CACTGTTTGGTTCAAAGGAG+GGG - contig397end:23271-23290 None:intergenic 45.0%
! CCACTAAGTTGGGCTTCTAT+TGG + contig397end:25637-25656 MsG0080048668.01.T01:intron 45.0%
! CTTCAAAGCAGCTTTTGCCA+TGG - contig397end:26192-26211 None:intergenic 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG + contig397end:21846-21865 MsG0080048668.01.T01:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - contig397end:22213-22232 None:intergenic 45.0%
! CTTTTGATCGACAACACGTC+TGG + contig397end:22984-23003 MsG0080048668.01.T01:intron 45.0%
! GGCGGAAACCAAACTTTTGA+AGG + contig397end:26158-26177 MsG0080048668.01.T01:CDS 45.0%
! TGTATTGGAGGAGGGTTTTG+GGG + contig397end:22000-22019 MsG0080048668.01.T01:intron 45.0%
! TTCACTAAGTTGAGCAGTGC+TGG + contig397end:22735-22754 MsG0080048668.01.T01:CDS 45.0%
! TTTAGTTCCCCCAAATGAGG+AGG - contig397end:21976-21995 None:intergenic 45.0%
!! CTCGCTCACTGACTTACTAA+TGG + contig397end:23959-23978 MsG0080048668.01.T01:intron 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG + contig397end:21845-21864 MsG0080048668.01.T01:intron 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - contig397end:22214-22233 None:intergenic 45.0%
!! GTGAAATGGTGTTGTTGCTG+AGG + contig397end:21681-21700 MsG0080048668.01.T01:intron 45.0%
!! GTGAATCTGTAGGTGTTGGA+GGG + contig397end:22612-22631 MsG0080048668.01.T01:intron 45.0%
!! TGTGAATCTGTAGGTGTTGG+AGG + contig397end:22611-22630 MsG0080048668.01.T01:intron 45.0%
!!! TTTTGAAGGTGCTTTGGCCA+TGG + contig397end:26172-26191 MsG0080048668.01.T01:CDS 45.0%
AACACTCTGCAAGGGAAGAG+GGG - contig397end:24576-24595 None:intergenic 50.0%
AATCGCCTGCAGAATGGCTT+AGG + contig397end:24130-24149 MsG0080048668.01.T01:intron 50.0%
ACGGGATGACGTACTGTCAA+AGG + contig397end:26088-26107 MsG0080048668.01.T01:CDS 50.0%
ACTGTGAAGGTAGAGCCTTC+CGG - contig397end:26058-26077 None:intergenic 50.0%
AGGGGAAGGCTTGGGAAAAA+AGG + contig397end:21874-21893 MsG0080048668.01.T01:intron 50.0%
ATCGCCTGCAGAATGGCTTA+GGG + contig397end:24131-24150 MsG0080048668.01.T01:intron 50.0%
ATGGCTTAGGGGAATACTGG+TGG + contig397end:24143-24162 MsG0080048668.01.T01:intron 50.0%
ATTCCCCTAAGCCATTCTGC+AGG - contig397end:24138-24157 None:intergenic 50.0%
CCATGTAGCCGAATCCACTT+AGG + contig397end:21823-21842 MsG0080048668.01.T01:intron 50.0%
CTTCACAGTGGCGAGGTTTA+CGG + contig397end:26069-26088 MsG0080048668.01.T01:CDS 50.0%
CTTCCGGCTCTCGAATCTAT+CGG - contig397end:26042-26061 None:intergenic 50.0%
GAAACCAAAGGGGGTTGAGA+AGG - contig397end:21325-21344 None:intergenic 50.0%
GAACACTCTGCAAGGGAAGA+GGG - contig397end:24577-24596 None:intergenic 50.0%
GAAGGGAAGGAAAGGCTTTG+AGG - contig397end:22191-22210 None:intergenic 50.0%
GGCTGTTTACAGGAGCTTCA+TGG + contig397end:23471-23490 MsG0080048668.01.T01:intron 50.0%
GGTCCCAAGATGACCATTCT+AGG - contig397end:25339-25358 None:intergenic 50.0%
TCATTCAAGCTGGTGGGAAC+AGG + contig397end:25043-25062 MsG0080048668.01.T01:intron 50.0%
TCTGCTTGTACTTGGGGAAG+TGG - contig397end:21083-21102 None:intergenic 50.0%
TGAAGCCTTTCATCGTGCCA+TGG + contig397end:24418-24437 MsG0080048668.01.T01:CDS 50.0%
TGATCATAACGATCTCGGGC+AGG - contig397end:22675-22694 None:intergenic 50.0%
TGGCTTAGGGGAATACTGGT+GGG + contig397end:24144-24163 MsG0080048668.01.T01:intron 50.0%
TTCACAGTGGCGAGGTTTAC+GGG + contig397end:26070-26089 MsG0080048668.01.T01:CDS 50.0%
TTCCGGCTCTCGAATCTATC+GGG - contig397end:26041-26060 None:intergenic 50.0%
TTTGCGAGTTTGGAGGGGAA+GGG + contig397end:21851-21870 MsG0080048668.01.T01:intron 50.0%
TTTGGGAGTTTGGAGGGGAA+GGG - contig397end:22208-22227 None:intergenic 50.0%
! AGTCAGTGAGCGAGTTTTGC+GGG - contig397end:23953-23972 None:intergenic 50.0%
! CCTAAGTGGATTCGGCTACA+TGG - contig397end:21826-21845 None:intergenic 50.0%
! GTTGCTGCCCACATGACTTT+TGG - contig397end:21015-21034 None:intergenic 50.0%
! TTGAGAGAGGCGTGAGAAGA+CGG - contig397end:21174-21193 None:intergenic 50.0%
!! AGGGAAGGAAAGGCTTTGAG+GGG - contig397end:22189-22208 None:intergenic 50.0%
!! CGAGTTTTGCGGGAGAGTAT+AGG - contig397end:23943-23962 None:intergenic 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG + contig397end:21844-21863 MsG0080048668.01.T01:intron 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - contig397end:22215-22234 None:intergenic 50.0%
!! GTATTGGAGGAGGGTTTTGG+GGG + contig397end:22001-22020 MsG0080048668.01.T01:intron 50.0%
!!! GGTGGTGCTTTTAGAGTGTC+TGG + contig397end:22428-22447 MsG0080048668.01.T01:intron 50.0%
!!! TATTGGAGGAGGGTTTTGGG+GGG + contig397end:22002-22021 MsG0080048668.01.T01:intron 50.0%
AAAATGGGAGGGGAGGGCTT+TGG + contig397end:21922-21941 MsG0080048668.01.T01:intron 55.0%
AAATGGGAGGGGAGGGCTTT+GGG + contig397end:21923-21942 MsG0080048668.01.T01:intron 55.0%
AAGCAAACAGTGGCGAGTGC+AGG + contig397end:26001-26020 MsG0080048668.01.T01:CDS 55.0%
AAGCGCCATGGCACGATGAA+AGG - contig397end:24426-24445 None:intergenic 55.0%
AGGCAGATGGATGGGAACAG+AGG + contig397end:26301-26320 MsG0080048668.01.T01:three_prime_UTR 55.0%
CAACGTGTCACAGTCGTGTC+CGG + contig397end:23079-23098 MsG0080048668.01.T01:intron 55.0%
CACATGTGCAGTGTCGTGTC+AGG - contig397end:23012-23031 None:intergenic 55.0%
CGAACACTCTGCAAGGGAAG+AGG - contig397end:24578-24597 None:intergenic 55.0%
CGATAGATTCGAGAGCCGGA+AGG + contig397end:26040-26059 MsG0080048668.01.T01:CDS 55.0%
CGTAAACCTCGCCACTGTGA+AGG - contig397end:26071-26090 None:intergenic 55.0%
CTCCCGATAGATTCGAGAGC+CGG + contig397end:26036-26055 MsG0080048668.01.T01:CDS 55.0%
CTGGGGCTATTTGGAAGGGA+AGG + contig397end:22937-22956 MsG0080048668.01.T01:CDS 55.0%
GCATTTGGTTAGAGGAGGGG+AGG - contig397end:23229-23248 None:intergenic 55.0%
GGAAGGCTCTACCTTCACAG+TGG + contig397end:26057-26076 MsG0080048668.01.T01:CDS 55.0%
GGAATACTGGTGGGGTTCGT+TGG + contig397end:24153-24172 MsG0080048668.01.T01:intron 55.0%
GGCTTAGGGGAATACTGGTG+GGG + contig397end:24145-24164 MsG0080048668.01.T01:intron 55.0%
GTTTGCGAGTTTGGAGGGGA+AGG + contig397end:21850-21869 MsG0080048668.01.T01:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+AGG - contig397end:22209-22228 None:intergenic 55.0%
TCGCCTGCAGAATGGCTTAG+GGG + contig397end:24132-24151 MsG0080048668.01.T01:intron 55.0%
TTGGAGGGGAAGGGAAGGAA+AGG - contig397end:22199-22218 None:intergenic 55.0%
! AAGCGCGTTGGTACCCACAA+TGG + contig397end:21192-21211 MsG0080048668.01.T01:CDS 55.0%
! GCTTGCTGGCAGTGAGTTTC+TGG + contig397end:24442-24461 MsG0080048668.01.T01:CDS 55.0%
!!! AGGAGGGTTTTGGGGGGTTT+TGG + contig397end:22008-22027 MsG0080048668.01.T01:intron 55.0%
!!! AGGGTTTTGGGGGGTTTTGG+AGG + contig397end:22011-22030 MsG0080048668.01.T01:intron 55.0%
!!! GGGTTTTGGGGGGTTTTGGA+GGG + contig397end:22012-22031 MsG0080048668.01.T01:intron 55.0%
AAGGGTCCCACACGAACCTG+AGG - contig397end:21306-21325 None:intergenic 60.0%
AATGGGAGGGGAGGGCTTTG+GGG + contig397end:21924-21943 MsG0080048668.01.T01:intron 60.0%
AGGGTCCCACACGAACCTGA+GGG - contig397end:21305-21324 None:intergenic 60.0%
CGAGTTTGGAGGGGAAGGGA+GGG + contig397end:21855-21874 MsG0080048668.01.T01:intron 60.0%
CGGACACGACTGTGACACGT+TGG - contig397end:23081-23100 None:intergenic 60.0%
CGTGACCCTCAGGTTCGTGT+GGG + contig397end:21297-21316 MsG0080048668.01.T01:intron 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG + contig397end:21856-21875 MsG0080048668.01.T01:intron 60.0%
GCTCTACCTTCACAGTGGCG+AGG + contig397end:26062-26081 MsG0080048668.01.T01:CDS 60.0%
GGACCCTTCTCAACCCCCTT+TGG + contig397end:21318-21337 MsG0080048668.01.T01:intron 60.0%
GGAGTTTGGAGGGGAAGGGA+AGG - contig397end:22204-22223 None:intergenic 60.0%
GGTACCAACGCGCTTGAGAG+AGG - contig397end:21187-21206 None:intergenic 60.0%
TCGTGACCCTCAGGTTCGTG+TGG + contig397end:21296-21315 MsG0080048668.01.T01:intron 60.0%
CACGCCTCTCTCAAGCGCGT+TGG + contig397end:21180-21199 MsG0080048668.01.T01:CDS 65.0%
CATCGTGCCATGGCGCTTGC+TGG + contig397end:24428-24447 MsG0080048668.01.T01:CDS 65.0%
CGTTCGCACTCGTGACCCTC+AGG + contig397end:21287-21306 MsG0080048668.01.T01:CDS 65.0%
CTCACTGCCAGCAAGCGCCA+TGG - contig397end:24438-24457 None:intergenic 65.0%
GCGAGTTTGGAGGGGAAGGG+AGG + contig397end:21854-21873 MsG0080048668.01.T01:intron 65.0%
GGGAAGGGAGGGGAAGGCTT+GGG + contig397end:21866-21885 MsG0080048668.01.T01:intron 65.0%
TTGGAGGGGAAGGGAGGGGA+AGG + contig397end:21860-21879 MsG0080048668.01.T01:intron 65.0%
! ATGGGAGGGGAGGGCTTTGG+GGG + contig397end:21925-21944 MsG0080048668.01.T01:intron 65.0%
GGGGAAGGGAGGGGAAGGCT+TGG + contig397end:21865-21884 MsG0080048668.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
contig397end gene 20990 26558 20990 ID=MsG0080048668.01;Name=MsG0080048668.01
contig397end mRNA 20990 26558 20990 ID=MsG0080048668.01.T01;Parent=MsG0080048668.01;Name=MsG0080048668.01.T01;_AED=0.37;_eAED=0.41;_QI=31|0.66|0.85|1|1|1|7|341|383
contig397end exon 20990 21308 20990 ID=MsG0080048668.01.T01:exon:10157;Parent=MsG0080048668.01.T01
contig397end exon 22624 22770 22624 ID=MsG0080048668.01.T01:exon:10158;Parent=MsG0080048668.01.T01
contig397end exon 22893 23000 22893 ID=MsG0080048668.01.T01:exon:10159;Parent=MsG0080048668.01.T01
contig397end exon 24275 24466 24275 ID=MsG0080048668.01.T01:exon:10160;Parent=MsG0080048668.01.T01
contig397end exon 24590 24709 24590 ID=MsG0080048668.01.T01:exon:10161;Parent=MsG0080048668.01.T01
contig397end exon 25507 25578 25507 ID=MsG0080048668.01.T01:exon:10162;Parent=MsG0080048668.01.T01
contig397end exon 25993 26558 25993 ID=MsG0080048668.01.T01:exon:10163;Parent=MsG0080048668.01.T01
contig397end five_prime_UTR 20990 21020 20990 ID=MsG0080048668.01.T01:five_prime_utr;Parent=MsG0080048668.01.T01
contig397end CDS 21021 21308 21021 ID=MsG0080048668.01.T01:cds;Parent=MsG0080048668.01.T01
contig397end CDS 22624 22770 22624 ID=MsG0080048668.01.T01:cds;Parent=MsG0080048668.01.T01
contig397end CDS 22893 23000 22893 ID=MsG0080048668.01.T01:cds;Parent=MsG0080048668.01.T01
contig397end CDS 24275 24466 24275 ID=MsG0080048668.01.T01:cds;Parent=MsG0080048668.01.T01
contig397end CDS 24590 24709 24590 ID=MsG0080048668.01.T01:cds;Parent=MsG0080048668.01.T01
contig397end CDS 25507 25578 25507 ID=MsG0080048668.01.T01:cds;Parent=MsG0080048668.01.T01
contig397end CDS 25993 26217 25993 ID=MsG0080048668.01.T01:cds;Parent=MsG0080048668.01.T01
contig397end three_prime_UTR 26218 26558 26218 ID=MsG0080048668.01.T01:three_prime_utr;Parent=MsG0080048668.01.T01
Gene Sequence

>MsG0080048668.01.T01

ATGTGGGCAGCAACAACAACATCGAAGACATTATTATTCACCAAATTCCAATTCCATTTCCACTTCCCCAAGTACAAGCAGAAGCATTTCACTCTTCAACTTCGTCTAATGTCTAACGCTAAAACTGCTAGGGTTTCTGATTCTTCTTCTCCGTCTTCTCACGCCTCTCTCAAGCGCGTTGGTACCCACAATGGTAGCTTCCATTGTGATGAAGCTCTTGGTTGCTTCATGATTCGTCTCACTCGCAAGTTCTTCAATGCTGAAATCGTTCGCACTCGTGACCCTCAGGTGTTGGAGGGTCTTGATGCTGTTCTTGATGTTGGAGGGGTGTATGATCCTGCCCGAGATCGTTATGATCATCACCAGAAAGGATTTGAGGAGGTTTTTGGTCACGGTTTCTTCACTAAGTTGAGCAGTGCTGGTCTTGTTTATAAGGGGATTAAAATCTGTCCTCAGTCAATTTTTGCTTGGATGCAATACTGGGGCTATTTGGAAGGGAAGGAAGATGATATTTGTAGCATCGACACTTTTGATCGACAACACGCAATTGATGCCGTAGACAATGGAATCAATCAATACGATACAGACCAGCCTCCAAAATATGTGAATAATACTCATTTATCCTCAAGAGTAGGAAGGTTTAATCTGGATTGGACAGATCCTGATCAGTCATCTGAGAAAGAAAATGAAGCCTTTCATCGTGCCATGGCGCTTGCTGGCAGTGAGTTTCTGGATAGTGTTCGTTTTCATGTGAACTCGTGGTTACCAGCAAAGTCAATTGTGATGGAGACCATTGCGGCTAGACAAACTGTTGATCCTTCTGGAGAAATTTTAGTTTTGAAAAAATTCTGTCCTTGGAAGCTTCATTTATTTGAGCTTGAGGGGGAGATGAAAATTGACCCACCAATCAAATATGTTCTGTATGAGGATGAGAGAAGCAAACAGTGGCGAGTGCAGGCAGTTTCAGTATCTCCCGATAGATTCGAGAGCCGGAAGGCTCTACCTTCACAGTGGCGAGGTTTACGGGATGACGTACTGTCAAAGGAATCTGGCATTCCTGGTTGTGTTTTTGTCCATATGAGTGGATTTATTGGCGGAAACCAAACTTTTGAAGGTGCTTTGGCCATGGCAAAAGCTGCTTTGAAGATGTAG
Protein sequence

>MsG0080048668.01.T01

MWAATTTSKTLLFTKFQFHFHFPKYKQKHFTLQLRLMSNAKTARVSDSSSPSSHASLKRVGTHNGSFHCDEALGCFMIRLTRKFFNAEIVRTRDPQVLEGLDAVLDVGGVYDPARDRYDHHQKGFEEVFGHGFFTKLSSAGLVYKGIKICPQSIFAWMQYWGYLEGKEDDICSIDTFDRQHAIDAVDNGINQYDTDQPPKYVNNTHLSSRVGRFNLDWTDPDQSSEKENEAFHRAMALAGSEFLDSVRFHVNSWLPAKSIVMETIAARQTVDPSGEILVLKKFCPWKLHLFELEGEMKIDPPIKYVLYEDERSKQWRVQAVSVSPDRFESRKALPSQWRGLRDDVLSKESGIPGCVFVHMSGFIGGNQTFEGALAMAKAALKM*