AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000139.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000139.01.T01 MTR_1g022385 71.277 94 9 1 28 103 32 125 6.79e-34 120
MsG0180000139.01.T01 MTR_2g038250 70.213 94 10 1 28 103 1 94 1.16e-33 119
MsG0180000139.01.T01 MTR_4g008160 61.538 91 17 1 31 103 3 93 2.12e-27 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000139.01.T01 AT3G13580 62.766 94 17 2 28 103 1 94 1.02e-26 101
MsG0180000139.01.T01 AT3G13580 92.857 28 2 0 135 162 207 234 2.98e-11 60.5
MsG0180000139.01.T01 AT3G13580 62.766 94 17 2 28 103 1 94 1.02e-26 101
MsG0180000139.01.T01 AT3G13580 92.857 28 2 0 135 162 207 234 2.98e-11 60.5
MsG0180000139.01.T01 AT3G13580 62.766 94 17 2 28 103 1 94 1.02e-26 101
MsG0180000139.01.T01 AT3G13580 92.857 28 2 0 135 162 207 234 2.98e-11 60.5
MsG0180000139.01.T01 AT3G13580 62.766 94 17 2 28 103 1 94 1.02e-26 101
MsG0180000139.01.T01 AT3G13580 92.857 28 2 0 135 162 207 234 2.98e-11 60.5
MsG0180000139.01.T01 AT3G13580 62.766 94 17 2 28 103 1 94 1.02e-26 101
MsG0180000139.01.T01 AT3G13580 92.857 28 2 0 135 162 207 234 2.98e-11 60.5
MsG0180000139.01.T01 AT3G13580 62.766 94 17 2 28 103 1 94 1.02e-26 101
MsG0180000139.01.T01 AT3G13580 92.857 28 2 0 135 162 207 234 2.98e-11 60.5
MsG0180000139.01.T01 AT3G13580 62.766 94 17 2 28 103 1 94 1.02e-26 101
MsG0180000139.01.T01 AT3G13580 92.857 28 2 0 135 162 207 234 2.98e-11 60.5
MsG0180000139.01.T01 AT3G13580 62.766 94 17 2 28 103 1 94 1.02e-26 101
MsG0180000139.01.T01 AT3G13580 92.857 28 2 0 135 162 207 234 2.98e-11 60.5
MsG0180000139.01.T01 AT3G13580 62.766 94 17 2 28 103 1 94 1.02e-26 101
MsG0180000139.01.T01 AT3G13580 92.857 28 2 0 135 162 207 234 2.98e-11 60.5
MsG0180000139.01.T01 AT2G01250 62.222 90 16 1 32 103 3 92 8.53e-26 97.8
MsG0180000139.01.T01 AT2G01250 62.222 90 16 1 32 103 3 92 6.20e-25 97.1
MsG0180000139.01.T01 AT2G01250 89.286 28 3 0 135 162 205 232 8.12e-11 59.3
MsG0180000139.01.T01 AT2G44120 60.000 90 18 1 32 103 3 92 1.14e-22 90.9
MsG0180000139.01.T01 AT2G44120 89.286 28 3 0 135 162 205 232 8.29e-11 58.9
MsG0180000139.01.T01 AT2G44120 60.000 90 18 1 32 103 8 97 1.30e-22 90.9
MsG0180000139.01.T01 AT2G44120 89.286 28 3 0 135 162 210 237 9.19e-11 58.9

Find 56 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAGCTCTTGTTCATTATT+AGG 0.173523 1:+1958280 MsG0180000139.01.T01:CDS
TGCTTCTTCAAAACGGATTC+AGG 0.216526 1:-1957443 None:intergenic
GGGAGTTATCTCCCGTTTCT+TGG 0.252457 1:-1956998 None:intergenic
TCTCCCAAACGTTATGTTTA+GGG 0.286354 1:+1957038 MsG0180000139.01.T01:CDS
ATCTCCCAAACGTTATGTTT+AGG 0.290731 1:+1957037 MsG0180000139.01.T01:CDS
TCAGAAGGATGAATTAGTTT+TGG 0.313390 1:+1960727 MsG0180000139.01.T01:exon
GATCTTTAATATTTAGTTCA+TGG 0.321508 1:+1960855 MsG0180000139.01.T01:three_prime_UTR
TTATCCAATGGGCAGGTTCT+TGG 0.334500 1:+1960516 MsG0180000139.01.T01:intron
AGTAAGCTTTAAAACTGAAT+TGG 0.358565 1:-1960933 None:intergenic
TTGCCCCTAAACATAACGTT+TGG 0.363450 1:-1957042 None:intergenic
TATCCAATGGGCAGGTTCTT+GGG 0.364373 1:+1960517 MsG0180000139.01.T01:intron
AGCAGAAAAGGAACGAAGAA+TGG 0.407682 1:+1957462 MsG0180000139.01.T01:CDS
AGATAGAAACCGAACAGTTC+GGG 0.408007 1:-1957018 None:intergenic
ATTTAGTTCATGGCCTTGCC+TGG 0.417457 1:+1960865 MsG0180000139.01.T01:three_prime_UTR
TGAAAACAAGGAAACTCATT+TGG 0.419051 1:+1957532 MsG0180000139.01.T01:CDS
ATGAACAAGAGCTTAGCTTC+AGG 0.424828 1:-1958273 None:intergenic
TTTCTTCTTCATACCACCTA+GGG 0.429478 1:-1960644 None:intergenic
GAGATAGAAACCGAACAGTT+CGG 0.432762 1:-1957019 None:intergenic
AACTCATGAAATCCAAGAAA+CGG 0.445537 1:+1956986 None:intergenic
TGCCCCTAAACATAACGTTT+GGG 0.448744 1:-1957041 None:intergenic
GAGATAACTCCCGAACTGTT+CGG 0.466982 1:+1957009 MsG0180000139.01.T01:CDS
TGAACAAGAGCTTAGCTTCA+GGG 0.470751 1:-1958272 None:intergenic
ACTCATGAAATCCAAGAAAC+GGG 0.472932 1:+1956987 None:intergenic
TATGTGGAAGGTGGTGATGC+TGG 0.489381 1:+1960676 MsG0180000139.01.T01:CDS
ATTGGTGAAGAAGCAGGAAC+AGG 0.496788 1:+1957487 MsG0180000139.01.T01:CDS
AAGGTGGTGATGCTGGAAAC+AGG 0.508908 1:+1960683 MsG0180000139.01.T01:CDS
GCAGAAAAGGAACGAAGAAT+GGG 0.509066 1:+1957463 MsG0180000139.01.T01:CDS
ATGGGCATTGGTGAAGAAGC+AGG 0.518449 1:+1957481 MsG0180000139.01.T01:CDS
GTCGAAAGAGGAAGTGAAAA+CGG 0.538106 1:+1957415 MsG0180000139.01.T01:CDS
TTTCAGCTCAAAGCTCCCCT+AGG 0.540847 1:+1960628 MsG0180000139.01.T01:CDS
AAAAGAAATCATTATGTGGA+AGG 0.546296 1:+1960664 MsG0180000139.01.T01:CDS
GAAGAAGAGAGCTGAAAACA+AGG 0.546659 1:+1957520 MsG0180000139.01.T01:CDS
TTGTGTGAGATTAATTATCA+AGG 0.551506 1:+1960759 MsG0180000139.01.T01:three_prime_UTR
GATTTGAAGGATGTCGAAAG+AGG 0.555198 1:+1957403 MsG0180000139.01.T01:intron
AGTCAAGGATGAATAAGTAA+AGG 0.558508 1:-1960907 None:intergenic
TTGTTCATTATTAGGATCAG+AGG 0.561223 1:+1958288 MsG0180000139.01.T01:CDS
CTCCCAAACGTTATGTTTAG+GGG 0.563924 1:+1957039 MsG0180000139.01.T01:CDS
AAACTGAATTGGCAAAGTCA+AGG 0.571654 1:-1960922 None:intergenic
GAAGAAAAGAAATCATTATG+TGG 0.573776 1:+1960660 MsG0180000139.01.T01:CDS
TGTTCATTATTAGGATCAGA+GGG 0.574120 1:+1958289 MsG0180000139.01.T01:CDS
TAGGGGAGCTTTGAGCTGAA+AGG 0.583589 1:-1960626 None:intergenic
GAAGCGTGAAGCTAAACTCA+AGG 0.589756 1:+1958233 MsG0180000139.01.T01:CDS
AGAAATCATTATGTGGAAGG+TGG 0.590613 1:+1960667 MsG0180000139.01.T01:CDS
TTGTTTGCCTCTCTGAAGTG+AGG 0.607151 1:-1960593 None:intergenic
GGGCAGGTTCTTGGGAAGCA+CGG 0.607398 1:+1960525 MsG0180000139.01.T01:intron
TTCTTCTTCATACCACCTAG+GGG 0.609907 1:-1960643 None:intergenic
AAGGAACGAAGAATGGGCAT+TGG 0.610396 1:+1957469 MsG0180000139.01.T01:CDS
GCTTTGAGCTGAAAGGCCAC+AGG 0.620507 1:-1960619 None:intergenic
GAGAGGCAAACAACTTCCTG+TGG 0.626203 1:+1960603 MsG0180000139.01.T01:CDS
ACATCAACGAACTCATCAGA+AGG 0.630261 1:+1960712 MsG0180000139.01.T01:CDS
CAGCTCAAAGCTCCCCTAGG+TGG 0.637612 1:+1960631 MsG0180000139.01.T01:CDS
CGTGAAGCTAAACTCAAGGG+TGG 0.639969 1:+1958237 MsG0180000139.01.T01:CDS
ATTCACGAGATACTAACAGT+TGG 0.662033 1:+1960569 MsG0180000139.01.T01:CDS
AAGCGTGAAGCTAAACTCAA+GGG 0.663061 1:+1958234 MsG0180000139.01.T01:CDS
AGTTGGTCCTCACTTCAGAG+AGG 0.754549 1:+1960586 MsG0180000139.01.T01:CDS
GAAAGAGGAAGTGAAAACGG+TGG 0.767520 1:+1957418 MsG0180000139.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAATAATAAGAATAATA+AGG - Chr1:1957337-1957356 None:intergenic 10.0%
!!! AATTTTGATTATGTAATTTT+AGG + Chr1:1957607-1957626 MsG0180000139.01.T01:intron 10.0%
!!! ATAATATTTTAAAGCAAAAA+CGG - Chr1:1960808-1960827 None:intergenic 10.0%
!!! TTATTGTTGTTTTAATTAAT+GGG + Chr1:1958377-1958396 MsG0180000139.01.T01:intron 10.0%
!! AAATAATAAATCAATACTGT+AGG - Chr1:1958323-1958342 None:intergenic 15.0%
!! ATAACAAAAATATTATGCAT+TGG - Chr1:1959403-1959422 None:intergenic 15.0%
!!! AACTTATTTTATGTTACATA+CGG + Chr1:1959525-1959544 MsG0180000139.01.T01:intron 15.0%
!!! AGCAACATTTATATTATTTT+GGG + Chr1:1957109-1957128 MsG0180000139.01.T01:intron 15.0%
!!! ATACTTCTTTTATTTTCTTA+CGG + Chr1:1959712-1959731 MsG0180000139.01.T01:intron 15.0%
!!! CAAATAATTTTATTTAGAAG+AGG - Chr1:1959427-1959446 None:intergenic 15.0%
!!! GTATAAATTAAAAAGGTATA+TGG - Chr1:1958165-1958184 None:intergenic 15.0%
!!! GTTATTGTTGTTTTAATTAA+TGG + Chr1:1958376-1958395 MsG0180000139.01.T01:intron 15.0%
!!! TAATATTTTAAAGCAAAAAC+GGG - Chr1:1960807-1960826 None:intergenic 15.0%
!!! TAGCAACATTTATATTATTT+TGG + Chr1:1957108-1957127 MsG0180000139.01.T01:intron 15.0%
!! TATAGTATACTATTATTTCC+AGG + Chr1:1958343-1958362 MsG0180000139.01.T01:intron 20.0%
!!! AATATTTTAAAGCAAAAACG+GGG - Chr1:1960806-1960825 None:intergenic 20.0%
!!! GATCTTTAATATTTAGTTCA+TGG + Chr1:1960855-1960874 MsG0180000139.01.T01:three_prime_UTR 20.0%
!!! GTAACTTTTTAGTGTATAAT+TGG + Chr1:1958556-1958575 MsG0180000139.01.T01:intron 20.0%
!!! TTAAAAAGGTATATGGATTA+AGG - Chr1:1958158-1958177 None:intergenic 20.0%
! AAAAGAAATCATTATGTGGA+AGG + Chr1:1960664-1960683 MsG0180000139.01.T01:CDS 25.0%
! AAAAGTAACAGATGTATGAA+TGG - Chr1:1957303-1957322 None:intergenic 25.0%
! AAACTAAACAAGTATGAAAG+AGG + Chr1:1959777-1959796 MsG0180000139.01.T01:intron 25.0%
! AACTTACAACTAAAACTCTT+AGG + Chr1:1959189-1959208 MsG0180000139.01.T01:intron 25.0%
! AGTCTTTCTATGTTTAATAC+AGG + Chr1:1958897-1958916 MsG0180000139.01.T01:intron 25.0%
! ATGAAAGAGGAAAAAGAAAA+GGG + Chr1:1959790-1959809 MsG0180000139.01.T01:intron 25.0%
! GAAAAAACTTACATTGTCAT+AGG - Chr1:1958827-1958846 None:intergenic 25.0%
! GAAGAAAAGAAATCATTATG+TGG + Chr1:1960660-1960679 MsG0180000139.01.T01:CDS 25.0%
! GTCTTTCTATGTTTAATACA+GGG + Chr1:1958898-1958917 MsG0180000139.01.T01:intron 25.0%
! TATGAAAGAGGAAAAAGAAA+AGG + Chr1:1959789-1959808 MsG0180000139.01.T01:intron 25.0%
! TCTTTCTATGCTTAATACAA+GGG - Chr1:1958964-1958983 None:intergenic 25.0%
! TCTTTCTATGTTTAATACAG+GGG + Chr1:1958899-1958918 MsG0180000139.01.T01:intron 25.0%
! TTGTGTGAGATTAATTATCA+AGG + Chr1:1960759-1960778 MsG0180000139.01.T01:three_prime_UTR 25.0%
!! ATATGGATTAAGGAATTGTT+TGG - Chr1:1958148-1958167 None:intergenic 25.0%
!!! AACATCAGATTGTTTTTGTT+TGG + Chr1:1958479-1958498 MsG0180000139.01.T01:intron 25.0%
!!! ATAAGTTTTTCAGCTTAAGT+AGG - Chr1:1958044-1958063 None:intergenic 25.0%
!!! ATTGGTTGTTTTTCAATTGA+AGG - Chr1:1959385-1959404 None:intergenic 25.0%
!!! CTTATTTTAACATATGCGAA+CGG + Chr1:1960833-1960852 MsG0180000139.01.T01:three_prime_UTR 25.0%
!!! TAAGTTTTTCAGCTTAAGTA+GGG - Chr1:1958043-1958062 None:intergenic 25.0%
!!! TAATTTTAGTATCAACGCTA+TGG + Chr1:1958410-1958429 MsG0180000139.01.T01:intron 25.0%
AAAGCCCATTGATATTTCAA+GGG + Chr1:1957162-1957181 MsG0180000139.01.T01:intron 30.0%
ACAAAACCCTAAATCACATT+GGG - Chr1:1957366-1957385 None:intergenic 30.0%
AGAGAAAATGAAACTAGGTT+TGG - Chr1:1957227-1957246 None:intergenic 30.0%
AGTATACTATTATTTCCAGG+TGG + Chr1:1958346-1958365 MsG0180000139.01.T01:intron 30.0%
AGTCAAGGATGAATAAGTAA+AGG - Chr1:1960910-1960929 None:intergenic 30.0%
ATAAGCTGTTAATCCAAACA+AGG - Chr1:1957633-1957652 None:intergenic 30.0%
ATAAGTTGTGAGACTATTTG+AGG - Chr1:1958097-1958116 None:intergenic 30.0%
ATGTAACATTCTTCTCAGTT+TGG - Chr1:1959939-1959958 None:intergenic 30.0%
ATTCTTCAACACAGTATTAG+AGG - Chr1:1960070-1960089 None:intergenic 30.0%
CAATCACTAAATGTTGTAGT+CGG + Chr1:1960344-1960363 MsG0180000139.01.T01:intron 30.0%
CTAAGCTCTTGTTCATTATT+AGG + Chr1:1958280-1958299 MsG0180000139.01.T01:CDS 30.0%
GAAAAAGAAAAGGGTAATTG+TGG + Chr1:1959799-1959818 MsG0180000139.01.T01:intron 30.0%
GAAAATGAGAAGAGAGAAAT+AGG + Chr1:1959230-1959249 MsG0180000139.01.T01:intron 30.0%
GAGAAAATGAAACTAGGTTT+GGG - Chr1:1957226-1957245 None:intergenic 30.0%
GATTAAGGAATTGTTTGGAT+TGG - Chr1:1958143-1958162 None:intergenic 30.0%
GCTGAAAAACTTATGAACAA+TGG + Chr1:1958050-1958069 MsG0180000139.01.T01:intron 30.0%
GTCAAAAGAAATGGAGAATA+AGG - Chr1:1960114-1960133 None:intergenic 30.0%
GTCTTTCTATGCTTAATACA+AGG - Chr1:1958965-1958984 None:intergenic 30.0%
GTTGTGATGTTTATCAAACA+TGG - Chr1:1959172-1959191 None:intergenic 30.0%
TAAAGCCCATTGATATTTCA+AGG + Chr1:1957161-1957180 MsG0180000139.01.T01:intron 30.0%
TACAACATTTAGTGATTGCA+GGG - Chr1:1960342-1960361 None:intergenic 30.0%
TGAAAACAAGGAAACTCATT+TGG + Chr1:1957532-1957551 MsG0180000139.01.T01:CDS 30.0%
TGAGAAATAGAGTAGATTTG+AGG + Chr1:1959283-1959302 MsG0180000139.01.T01:intron 30.0%
TGTTCATTATTAGGATCAGA+GGG + Chr1:1958289-1958308 MsG0180000139.01.T01:CDS 30.0%
TTAGTACAAGCTAGCTATAT+GGG + Chr1:1957724-1957743 MsG0180000139.01.T01:intron 30.0%
TTATGTTTAGGGGCAAAAAA+CGG + Chr1:1957049-1957068 MsG0180000139.01.T01:CDS 30.0%
TTGTTCATTATTAGGATCAG+AGG + Chr1:1958288-1958307 MsG0180000139.01.T01:CDS 30.0%
TTTAGTACAAGCTAGCTATA+TGG + Chr1:1957723-1957742 MsG0180000139.01.T01:intron 30.0%
TTTGACTGACATTATCCAAT+GGG + Chr1:1960505-1960524 MsG0180000139.01.T01:intron 30.0%
TTTGTTCAGTGAGTTATTCT+AGG + Chr1:1958714-1958733 MsG0180000139.01.T01:intron 30.0%
! AACTTTGTAAATGCGTTTTG+TGG + Chr1:1957749-1957768 MsG0180000139.01.T01:intron 30.0%
! GCAAAATCTTCCTTGATTTT+GGG - Chr1:1958437-1958456 None:intergenic 30.0%
! TGAAATATCAATGGGCTTTA+TGG - Chr1:1957161-1957180 None:intergenic 30.0%
! TGCAAAATCTTCCTTGATTT+TGG - Chr1:1958438-1958457 None:intergenic 30.0%
! TTTATGGACTGACATGTTAT+GGG - Chr1:1957145-1957164 None:intergenic 30.0%
!! AGTAGATTTGAGGTATTGTT+TGG + Chr1:1959293-1959312 MsG0180000139.01.T01:intron 30.0%
!! TCAGAAGGATGAATTAGTTT+TGG + Chr1:1960727-1960746 MsG0180000139.01.T01:exon 30.0%
!! TTTAATTTGTGTGCAGCAAA+AGG + Chr1:1958198-1958217 MsG0180000139.01.T01:intron 30.0%
!!! ACATAGTTTTGTGATGCTAT+TGG - Chr1:1957986-1958005 None:intergenic 30.0%
!!! ATGTAATTTTAGGCCTTGTT+TGG + Chr1:1957617-1957636 MsG0180000139.01.T01:intron 30.0%
!!! CATAGTTTTGTGATGCTATT+GGG - Chr1:1957985-1958004 None:intergenic 30.0%
!!! TTGTGATACCTTGTGTTTTT+TGG + Chr1:1958651-1958670 MsG0180000139.01.T01:intron 30.0%
ACAATAACAAGAAAACCACC+TGG - Chr1:1958364-1958383 None:intergenic 35.0%
AGAAATCATTATGTGGAAGG+TGG + Chr1:1960667-1960686 MsG0180000139.01.T01:CDS 35.0%
AGACAACTCAATCATTGAAC+AGG + Chr1:1960299-1960318 MsG0180000139.01.T01:intron 35.0%
AGATCAAAACCTCTGCTATA+AGG - Chr1:1960047-1960066 None:intergenic 35.0%
AGATCTGCAGTCAAAAGAAA+TGG - Chr1:1960123-1960142 None:intergenic 35.0%
AGCATAGAAAGACTATTCCA+AGG + Chr1:1958972-1958991 MsG0180000139.01.T01:intron 35.0%
AGTAACAGATGTATGAATGG+AGG - Chr1:1957300-1957319 None:intergenic 35.0%
ATATTCCTTGGCGTATTGTT+TGG - Chr1:1957565-1957584 None:intergenic 35.0%
ATCTCCCAAACGTTATGTTT+AGG + Chr1:1957037-1957056 MsG0180000139.01.T01:CDS 35.0%
ATTCACGAGATACTAACAGT+TGG + Chr1:1960569-1960588 MsG0180000139.01.T01:CDS 35.0%
CAAAACCCTAAATCACATTG+GGG - Chr1:1957365-1957384 None:intergenic 35.0%
CACAAAACCCTAAATCACAT+TGG - Chr1:1957367-1957386 None:intergenic 35.0%
CTAAAACTCTTAGGTGTGTT+TGG + Chr1:1959198-1959217 MsG0180000139.01.T01:intron 35.0%
CTACAACATTTAGTGATTGC+AGG - Chr1:1960343-1960362 None:intergenic 35.0%
CTTGTTGAACTGATGTTGAA+CGG + Chr1:1958776-1958795 MsG0180000139.01.T01:intron 35.0%
CTTTGACTGACATTATCCAA+TGG + Chr1:1960504-1960523 MsG0180000139.01.T01:intron 35.0%
GAATGATGATCATTCCATCT+AGG - Chr1:1960387-1960406 None:intergenic 35.0%
GATCAAAACCTCTGCTATAA+GGG - Chr1:1960046-1960065 None:intergenic 35.0%
GATGGAGAGAAAATGAAACT+AGG - Chr1:1957232-1957251 None:intergenic 35.0%
GCATAGAAAGACTATTCCAA+GGG + Chr1:1958973-1958992 MsG0180000139.01.T01:intron 35.0%
GCTTATTTGAGCTTATCTAC+AGG - Chr1:1958121-1958140 None:intergenic 35.0%
GGCTACATTGTAATATTGCA+TGG - Chr1:1960093-1960112 None:intergenic 35.0%
GGTTGAGCTTATGTTACATA+CGG + Chr1:1960194-1960213 MsG0180000139.01.T01:intron 35.0%
GTTGAGCTTATGTTACATAC+GGG + Chr1:1960195-1960214 MsG0180000139.01.T01:intron 35.0%
TAAAGCAAAAACGGGGATTA+AGG - Chr1:1960799-1960818 None:intergenic 35.0%
TACCTGATCATCATATTCCT+TGG - Chr1:1957577-1957596 None:intergenic 35.0%
TAGGAACCAAACAACAAAGT+CGG - Chr1:1960409-1960428 None:intergenic 35.0%
TCACTGAACAAACCTTAATC+AGG - Chr1:1958706-1958725 None:intergenic 35.0%
TCAGGTGTAACTATATCTCA+AGG - Chr1:1958849-1958868 None:intergenic 35.0%
TCATAGGACACTTAAACAGT+GGG - Chr1:1958811-1958830 None:intergenic 35.0%
TCTATGCTTAAACAATCCCT+TGG - Chr1:1958992-1959011 None:intergenic 35.0%
TCTCCCAAACGTTATGTTTA+GGG + Chr1:1957038-1957057 MsG0180000139.01.T01:CDS 35.0%
TGTCAGTAGATAAGCTCAAT+AGG + Chr1:1958003-1958022 MsG0180000139.01.T01:intron 35.0%
TTCATCCCCAATGTGATTTA+GGG + Chr1:1957357-1957376 MsG0180000139.01.T01:intron 35.0%
TTGAACAGGTTTGTCTGATT+TGG + Chr1:1960313-1960332 MsG0180000139.01.T01:intron 35.0%
TTTCTTCTTCATACCACCTA+GGG - Chr1:1960647-1960666 None:intergenic 35.0%
! AAACACAAGGTATCACAATG+AGG - Chr1:1958649-1958668 None:intergenic 35.0%
! AAATCACATCAAAGTGCTTC+AGG - Chr1:1958867-1958886 None:intergenic 35.0%
! AGAATTTTTCACTGCATTCC+AGG - Chr1:1960886-1960905 None:intergenic 35.0%
! CCTTTTCTGCTTCTTCAAAA+CGG - Chr1:1957453-1957472 None:intergenic 35.0%
! CTCTCTACTTGTTACTAGTT+AGG + Chr1:1959143-1959162 MsG0180000139.01.T01:intron 35.0%
! CTTTATGGACTGACATGTTA+TGG - Chr1:1957146-1957165 None:intergenic 35.0%
! TTTGGTTCAGCAGAGAATTA+GGG - Chr1:1959921-1959940 None:intergenic 35.0%
! TTTTCTTCTTCATACCACCT+AGG - Chr1:1960648-1960667 None:intergenic 35.0%
!! ATCATTCCGACTTTGTTGTT+TGG + Chr1:1960400-1960419 MsG0180000139.01.T01:intron 35.0%
!! CAGCAAAGCAATTTTAATCG+AGG - Chr1:1958506-1958525 None:intergenic 35.0%
!! CTTTTGACTGCAGATCTTAA+TGG + Chr1:1960126-1960145 MsG0180000139.01.T01:intron 35.0%
!! TGTGCTCTGATTTGATTTGA+AGG + Chr1:1957390-1957409 MsG0180000139.01.T01:intron 35.0%
!!! TTTTTGAGTCTTCGCAAATC+TGG - Chr1:1959865-1959884 None:intergenic 35.0%
AACACACCATACACAGAATC+TGG - Chr1:1960452-1960471 None:intergenic 40.0%
AACAGTCCAGATTCTGTGTA+TGG + Chr1:1960443-1960462 MsG0180000139.01.T01:intron 40.0%
AAGCGTGAAGCTAAACTCAA+GGG + Chr1:1958234-1958253 MsG0180000139.01.T01:CDS 40.0%
ACATCAACGAACTCATCAGA+AGG + Chr1:1960712-1960731 MsG0180000139.01.T01:CDS 40.0%
AGATAGAAACCGAACAGTTC+GGG - Chr1:1957021-1957040 None:intergenic 40.0%
AGCAGAAAAGGAACGAAGAA+TGG + Chr1:1957462-1957481 MsG0180000139.01.T01:CDS 40.0%
AGCATAGAAAGACTGTTCCA+AGG + Chr1:1959004-1959023 MsG0180000139.01.T01:intron 40.0%
AGGGAATTGATCTACAAGAG+GGG + Chr1:1960239-1960258 MsG0180000139.01.T01:intron 40.0%
ATGAACAAGAGCTTAGCTTC+AGG - Chr1:1958276-1958295 None:intergenic 40.0%
CACATCAAGATAAGCACTTG+TGG - Chr1:1957808-1957827 None:intergenic 40.0%
CAGGGAATTGATCTACAAGA+GGG + Chr1:1960238-1960257 MsG0180000139.01.T01:intron 40.0%
CGAAGACTCAAAAAAGCAGT+AGG + Chr1:1959871-1959890 MsG0180000139.01.T01:intron 40.0%
CTATAAGGGTCTATCAAGGA+TGG - Chr1:1960032-1960051 None:intergenic 40.0%
CTCAATAGGCCAATCAAATC+AGG + Chr1:1958017-1958036 MsG0180000139.01.T01:intron 40.0%
CTCCCAAACGTTATGTTTAG+GGG + Chr1:1957039-1957058 MsG0180000139.01.T01:CDS 40.0%
CTCGCCCTTGAAATATCAAT+GGG - Chr1:1957169-1957188 None:intergenic 40.0%
CTTCATCCCCAATGTGATTT+AGG + Chr1:1957356-1957375 MsG0180000139.01.T01:intron 40.0%
GAAGAAGAGAGCTGAAAACA+AGG + Chr1:1957520-1957539 MsG0180000139.01.T01:CDS 40.0%
GAGATAGAAACCGAACAGTT+CGG - Chr1:1957022-1957041 None:intergenic 40.0%
GATTTGAAGGATGTCGAAAG+AGG + Chr1:1957403-1957422 MsG0180000139.01.T01:intron 40.0%
GCAGAAAAGGAACGAAGAAT+GGG + Chr1:1957463-1957482 MsG0180000139.01.T01:CDS 40.0%
GCATAGAAAGACTGTTCCAA+GGG + Chr1:1959005-1959024 MsG0180000139.01.T01:intron 40.0%
GTCATAGGACACTTAAACAG+TGG - Chr1:1958812-1958831 None:intergenic 40.0%
GTCGAAAGAGGAAGTGAAAA+CGG + Chr1:1957415-1957434 MsG0180000139.01.T01:CDS 40.0%
TAGCGCATCCAAAAAACACA+AGG - Chr1:1958662-1958681 None:intergenic 40.0%
TCAGGGAATTGATCTACAAG+AGG + Chr1:1960237-1960256 MsG0180000139.01.T01:intron 40.0%
TCATGCAATGCACCTGATTA+AGG + Chr1:1958691-1958710 MsG0180000139.01.T01:intron 40.0%
TCTCGCCCTTGAAATATCAA+TGG - Chr1:1957170-1957189 None:intergenic 40.0%
TCTGCTATAAGGGTCTATCA+AGG - Chr1:1960036-1960055 None:intergenic 40.0%
TCTTTACTGTCAGACCTAGA+TGG + Chr1:1960370-1960389 MsG0180000139.01.T01:intron 40.0%
TGAACAAGAGCTTAGCTTCA+GGG - Chr1:1958275-1958294 None:intergenic 40.0%
TGCCCCTAAACATAACGTTT+GGG - Chr1:1957044-1957063 None:intergenic 40.0%
TTCGCAAATCTGGAGAGAAA+GGG - Chr1:1959855-1959874 None:intergenic 40.0%
TTCTTCTTCATACCACCTAG+GGG - Chr1:1960646-1960665 None:intergenic 40.0%
TTGATAGACCCTTATAGCAG+AGG + Chr1:1960035-1960054 MsG0180000139.01.T01:intron 40.0%
TTGCCCCTAAACATAACGTT+TGG - Chr1:1957045-1957064 None:intergenic 40.0%
TTGGTTCAGCAGAGAATTAG+GGG - Chr1:1959920-1959939 None:intergenic 40.0%
! AGGGGCAAAAAACGGTATTT+TGG + Chr1:1957057-1957076 MsG0180000139.01.T01:intron 40.0%
! GGGCAAAAAACGGTATTTTG+GGG + Chr1:1957059-1957078 MsG0180000139.01.T01:intron 40.0%
! GGGGCAAAAAACGGTATTTT+GGG + Chr1:1957058-1957077 MsG0180000139.01.T01:intron 40.0%
! GTTTGGTTCAGCAGAGAATT+AGG - Chr1:1959922-1959941 None:intergenic 40.0%
! TAAGTAGGGCCTGATTTGAT+TGG - Chr1:1958029-1958048 None:intergenic 40.0%
! TGCTTCTTCAAAACGGATTC+AGG - Chr1:1957446-1957465 None:intergenic 40.0%
! TGGACTCTAACACTGTGTTT+TGG - Chr1:1960012-1960031 None:intergenic 40.0%
!! CTGTTCTAGCTTGAGCAAAT+AGG - Chr1:1960428-1960447 None:intergenic 40.0%
!! GGCAAAAAACGGTATTTTGG+GGG + Chr1:1957060-1957079 MsG0180000139.01.T01:intron 40.0%
!!! CCGTTTTGAAGAAGCAGAAA+AGG + Chr1:1957450-1957469 MsG0180000139.01.T01:CDS 40.0%
!!! CTAACACTGTGTTTTGGTAG+AGG - Chr1:1960006-1960025 None:intergenic 40.0%
AAGGAACGAAGAATGGGCAT+TGG + Chr1:1957469-1957488 MsG0180000139.01.T01:CDS 45.0%
ACGCTATGGACCCAAAATCA+AGG + Chr1:1958424-1958443 MsG0180000139.01.T01:intron 45.0%
ACTAGCAAAACAACCTCCCT+TGG - Chr1:1959024-1959043 None:intergenic 45.0%
ACTGACATTATCCAATGGGC+AGG + Chr1:1960509-1960528 MsG0180000139.01.T01:intron 45.0%
ATTGGTGAAGAAGCAGGAAC+AGG + Chr1:1957487-1957506 MsG0180000139.01.T01:CDS 45.0%
CGCCAAGGAATATGATGATC+AGG + Chr1:1957572-1957591 MsG0180000139.01.T01:intron 45.0%
CTTACGGCAATCATGTGTGT+TGG + Chr1:1959728-1959747 MsG0180000139.01.T01:intron 45.0%
CTTCGCAAATCTGGAGAGAA+AGG - Chr1:1959856-1959875 None:intergenic 45.0%
GAAAGAGGAAGTGAAAACGG+TGG + Chr1:1957418-1957437 MsG0180000139.01.T01:CDS 45.0%
GAAGCGTGAAGCTAAACTCA+AGG + Chr1:1958233-1958252 MsG0180000139.01.T01:CDS 45.0%
GAGATAACTCCCGAACTGTT+CGG + Chr1:1957009-1957028 MsG0180000139.01.T01:CDS 45.0%
GTAACATAAGCTCAACCCTG+TGG - Chr1:1960191-1960210 None:intergenic 45.0%
TAGAAAGACTGTTCCAAGGG+AGG + Chr1:1959008-1959027 MsG0180000139.01.T01:intron 45.0%
TAGAGCCAAACAATACGCCA+AGG + Chr1:1957557-1957576 MsG0180000139.01.T01:intron 45.0%
TATCCAATGGGCAGGTTCTT+GGG + Chr1:1960517-1960536 MsG0180000139.01.T01:intron 45.0%
TTATCCAATGGGCAGGTTCT+TGG + Chr1:1960516-1960535 MsG0180000139.01.T01:intron 45.0%
TTGATCTACAAGAGGGGCTA+CGG + Chr1:1960245-1960264 MsG0180000139.01.T01:intron 45.0%
! ATTTAGTTCATGGCCTTGCC+TGG + Chr1:1960865-1960884 MsG0180000139.01.T01:three_prime_UTR 45.0%
! TTTTCACTGCATTCCAGGCA+AGG - Chr1:1960881-1960900 None:intergenic 45.0%
!! GGGAGGTTGTTTTGCTAGTT+TGG + Chr1:1959025-1959044 MsG0180000139.01.T01:intron 45.0%
!! TTGTTTGCCTCTCTGAAGTG+AGG - Chr1:1960596-1960615 None:intergenic 45.0%
!! AATAATTGTATAAATTAAAA+AGG - Chr1:1958172-1958191 None:intergenic 5.0%
!!! ATTTTTTTTATCAATTAAAA+TGG + Chr1:1959661-1959680 MsG0180000139.01.T01:intron 5.0%
AACCCTGTGGAGCATGTTCA+CGG - Chr1:1960178-1960197 None:intergenic 50.0%
AGTTGGTCCTCACTTCAGAG+AGG + Chr1:1960586-1960605 MsG0180000139.01.T01:CDS 50.0%
CCCTGACGCTCTTCAGATTA+GGG - Chr1:1960223-1960242 None:intergenic 50.0%
CGTGAAGCTAAACTCAAGGG+TGG + Chr1:1958237-1958256 MsG0180000139.01.T01:CDS 50.0%
CTCTCCATCTCCATCTACTG+CGG + Chr1:1957243-1957262 MsG0180000139.01.T01:intron 50.0%
GAAGAGAGACAGACAGACGT+GGG - Chr1:1959898-1959917 None:intergenic 50.0%
GAGAGGCAAACAACTTCCTG+TGG + Chr1:1960603-1960622 MsG0180000139.01.T01:CDS 50.0%
GGACTGACATGTTATGGGCT+GGG - Chr1:1957140-1957159 None:intergenic 50.0%
GGGAGTTATCTCCCGTTTCT+TGG - Chr1:1957001-1957020 None:intergenic 50.0%
GTGCAGCAAAAGGAGTGATC+AGG + Chr1:1958208-1958227 MsG0180000139.01.T01:intron 50.0%
TACCGTGAACATGCTCCACA+GGG + Chr1:1960173-1960192 MsG0180000139.01.T01:intron 50.0%
TCCCTGACGCTCTTCAGATT+AGG - Chr1:1960224-1960243 None:intergenic 50.0%
TGGACTGACATGTTATGGGC+TGG - Chr1:1957141-1957160 None:intergenic 50.0%
TTTCAGCTCAAAGCTCCCCT+AGG + Chr1:1960628-1960647 MsG0180000139.01.T01:CDS 50.0%
! AAGGTGGTGATGCTGGAAAC+AGG + Chr1:1960683-1960702 MsG0180000139.01.T01:CDS 50.0%
! TATGTGGAAGGTGGTGATGC+TGG + Chr1:1960676-1960695 MsG0180000139.01.T01:CDS 50.0%
!! AAAACGGTATTTTGGGGGCC+TGG + Chr1:1957065-1957084 MsG0180000139.01.T01:intron 50.0%
!! ACCCTAATCTGAAGAGCGTC+AGG + Chr1:1960219-1960238 MsG0180000139.01.T01:intron 50.0%
!! ATGGGCATTGGTGAAGAAGC+AGG + Chr1:1957481-1957500 MsG0180000139.01.T01:CDS 50.0%
!! CCCTAATCTGAAGAGCGTCA+GGG + Chr1:1960220-1960239 MsG0180000139.01.T01:intron 50.0%
!! GCAGCTTTTGCGTTTGAGAC+AGG + Chr1:1958455-1958474 MsG0180000139.01.T01:intron 50.0%
!! TAGGGGAGCTTTGAGCTGAA+AGG - Chr1:1960629-1960648 None:intergenic 50.0%
CTACCGTGAACATGCTCCAC+AGG + Chr1:1960172-1960191 MsG0180000139.01.T01:intron 55.0%
CTTCCCAAGAACCTGCCCAT+TGG - Chr1:1960523-1960542 None:intergenic 55.0%
GGAAGAGAGACAGACAGACG+TGG - Chr1:1959899-1959918 None:intergenic 55.0%
! GCTTTGAGCTGAAAGGCCAC+AGG - Chr1:1960622-1960641 None:intergenic 55.0%
CAGCTCAAAGCTCCCCTAGG+TGG + Chr1:1960631-1960650 MsG0180000139.01.T01:CDS 60.0%
CTGACTCCCCTGTTTGCTCC+AGG - Chr1:1957086-1957105 None:intergenic 60.0%
GGGCAGGTTCTTGGGAAGCA+CGG + Chr1:1960525-1960544 MsG0180000139.01.T01:intron 60.0%
GGGGCTACGGCAAAGTTGAC+AGG + Chr1:1960258-1960277 MsG0180000139.01.T01:intron 60.0%
TTGGGGGCCTGGAGCAAACA+GGG + Chr1:1957076-1957095 MsG0180000139.01.T01:intron 60.0%
TTTGGGGGCCTGGAGCAAAC+AGG + Chr1:1957075-1957094 MsG0180000139.01.T01:intron 60.0%
ACCTTGCGCGCCGCAGTAGA+TGG - Chr1:1957256-1957275 None:intergenic 65.0%
CGCGCCGCAGTAGATGGAGA+TGG - Chr1:1957250-1957269 None:intergenic 65.0%
TCCATCTACTGCGGCGCGCA+AGG + Chr1:1957252-1957271 MsG0180000139.01.T01:intron 65.0%
TGGGGGCCTGGAGCAAACAG+GGG + Chr1:1957077-1957096 MsG0180000139.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 1956991 1960943 1956991 ID=MsG0180000139.01;Name=MsG0180000139.01
Chr1 mRNA 1956991 1960943 1956991 ID=MsG0180000139.01.T01;Parent=MsG0180000139.01;Name=MsG0180000139.01.T01;_AED=0.53;_eAED=0.53;_QI=0|0|0.25|0.75|1|1|4|205|170
Chr1 exon 1960531 1960943 1960531 ID=MsG0180000139.01.T01:exon:6947;Parent=MsG0180000139.01.T01
Chr1 exon 1958230 1958310 1958230 ID=MsG0180000139.01.T01:exon:6946;Parent=MsG0180000139.01.T01
Chr1 exon 1957412 1957555 1957412 ID=MsG0180000139.01.T01:exon:6945;Parent=MsG0180000139.01.T01
Chr1 exon 1956991 1957070 1956991 ID=MsG0180000139.01.T01:exon:6944;Parent=MsG0180000139.01.T01
Chr1 CDS 1956991 1957070 1956991 ID=MsG0180000139.01.T01:cds;Parent=MsG0180000139.01.T01
Chr1 CDS 1957412 1957555 1957412 ID=MsG0180000139.01.T01:cds;Parent=MsG0180000139.01.T01
Chr1 CDS 1958230 1958310 1958230 ID=MsG0180000139.01.T01:cds;Parent=MsG0180000139.01.T01
Chr1 CDS 1960531 1960738 1960531 ID=MsG0180000139.01.T01:cds;Parent=MsG0180000139.01.T01
Chr1 three_prime_UTR 1960739 1960943 1960739 ID=MsG0180000139.01.T01:three_prime_utr;Parent=MsG0180000139.01.T01
Gene Sequence

>MsG0180000139.01.T01

ATGAAATCCAAGAAACGGGAGATAACTCCCGAACTGTTCGGTTTCTATCTCCCAAACGTTATGTTTAGGGGCAAAAAACGGATGTCGAAAGAGGAAGTGAAAACGGTGGTTCCTGAATCCGTTTTGAAGAAGCAGAAAAGGAACGAAGAATGGGCATTGGTGAAGAAGCAGGAACAGGAATCAGCTAAGAAGAAGAGAGCTGAAAACAAGGAAACTCATTTGGAGTTGAAGCGTGAAGCTAAACTCAAGGGTGGATTTTATGTTGACCCTGAAGCTAAGCTCTTGTTCATTATTAGGATCAGAGGGTTCTTGGGAAGCACGGTATCATCTGTATTGAAGATCGATTCACGAGATACTAACAGTTGGTCCTCACTTCAGAGAGGCAAACAACTTCCTGTGGCCTTTCAGCTCAAAGCTCCCCTAGGTGGTATGAAGAAGAAAAGAAATCATTATGTGGAAGGTGGTGATGCTGGAAACAGGAAGACTACATCAACGAACTCATCAGAAGGATGA

Protein sequence

>MsG0180000139.01.T01

MKSKKREITPELFGFYLPNVMFRGKKRMSKEEVKTVVPESVLKKQKRNEEWALVKKQEQESAKKKRAENKETHLELKREAKLKGGFYVDPEAKLLFIIRIRGFLGSTVSSVLKIDSRDTNSWSSLQRGKQLPVAFQLKAPLGGMKKKRNHYVEGGDAGNRKTTSTNSSEG*