AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017857.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017857.01.T01 MTR_3g113940 89.811 265 25 2 1 265 1 263 6.23e-94 277
MsG0380017857.01.T01 MTR_3g110202 50.980 102 48 1 118 219 97 196 7.64e-27 104
MsG0380017857.01.T01 MTR_1g006605 70.213 47 14 0 118 164 79 125 1.11e-19 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017857.01.T01 AT1G19990 42.857 273 118 10 2 262 3 249 8.00e-35 125
MsG0380017857.01.T01 AT5G11600 56.098 82 36 0 107 188 108 189 6.52e-26 102
MsG0380017857.01.T01 AT5G11600 56.098 82 36 0 107 188 108 189 6.52e-26 102

Find 63 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTCAGATTTGTGCTTCT+TGG 0.188619 3:-101523237 None:intergenic
TTGCATAATTGACGAATTAA+AGG 0.232622 3:-101523488 None:intergenic
ACTTTCTTTGCCACCTCTTT+AGG 0.245967 3:-101523026 None:intergenic
CAACGGTAAACCCCTTTCTA+AGG 0.258341 3:+101520323 MsG0380017857.01.T01:CDS
TTTCTTAATTGTAACAGATT+TGG 0.305161 3:-101523129 None:intergenic
ACAGCAGTTACAGAATTAAC+AGG 0.350814 3:-101523095 None:intergenic
TTTGTGAACAATCAATTCTA+AGG 0.351078 3:-101520219 None:intergenic
TGCTTTGATGTGGAGTTTGT+TGG 0.359320 3:-101523191 None:intergenic
ACGGAAGAATTTGGGGTAGC+TGG 0.366082 3:-101523158 None:intergenic
AACTGCAGGTTGATGGAATC+AGG 0.375812 3:+101522996 MsG0380017857.01.T01:intron
TTGGTGACACAAAACTTGTA+AGG 0.394895 3:+101523377 MsG0380017857.01.T01:three_prime_UTR
ATTTGTGCCATTTCGCTAGT+TGG 0.401961 3:-101520869 None:intergenic
CTAGCGAAATGGCACAAATC+TGG 0.411971 3:+101520873 MsG0380017857.01.T01:CDS
GTGGCACGAGGAATGGGTTC+AGG 0.420548 3:-101520378 None:intergenic
CTTGAGTTCCCTCTTAACTT+TGG 0.420628 3:-101520415 None:intergenic
TCAGATTTGTGCTTCTTGGT+TGG 0.428057 3:-101523233 None:intergenic
TGATTGCAACTGCAGGTTGA+TGG 0.428702 3:+101522989 MsG0380017857.01.T01:intron
AGCTGAAGTGGCACGAGGAA+TGG 0.440315 3:-101520385 None:intergenic
CTTCTCGCTCCAAAGTTAAG+AGG 0.441273 3:+101520406 MsG0380017857.01.T01:CDS
GTCTCGTAGAAAACCCTAGA+AGG 0.445303 3:-101520830 None:intergenic
CGGAAGAATTTGGGGTAGCT+GGG 0.453102 3:-101523157 None:intergenic
GGTGAAGATGAACAAGGTTT+GGG 0.454900 3:-101520180 None:intergenic
AAAGAAGAAGGTTAAGAAAG+AGG 0.455902 3:+101520625 MsG0380017857.01.T01:CDS
GAAGGTTAAGAAAGTAAAGA+AGG 0.462009 3:+101520670 MsG0380017857.01.T01:CDS
AGGTGAAGATGAACAAGGTT+TGG 0.463475 3:-101520181 None:intergenic
GAAGGTTAAGAAAGAGGAAG+AGG 0.464209 3:+101520631 MsG0380017857.01.T01:CDS
GCTGAAGTGGCACGAGGAAT+GGG 0.464474 3:-101520384 None:intergenic
ACAAATTCCAACTAGCGAAA+TGG 0.472854 3:+101520862 MsG0380017857.01.T01:CDS
GACATAAGCGATTCTGAAGA+AGG 0.482635 3:+101520145 MsG0380017857.01.T01:five_prime_UTR
TTAGAAAGGGGTTTACCGTT+GGG 0.482681 3:-101520321 None:intergenic
GTGTCACCAACAACAAATGC+CGG 0.491011 3:-101523364 None:intergenic
TTTGTCATCGTCGTCTTCGT+CGG 0.494023 3:-101520457 None:intergenic
CTTAGAAAGGGGTTTACCGT+TGG 0.503604 3:-101520322 None:intergenic
GGTGGATCACGTTTCTGTCC+AGG 0.503762 3:-101520704 None:intergenic
ATCAGGCTTGCTTCCTAAAG+AGG 0.510477 3:+101523013 MsG0380017857.01.T01:CDS
ATTGTTATGCAAACCTCTGC+AGG 0.514578 3:-101520725 None:intergenic
TGTCACCAACAACAAATGCC+GGG 0.520299 3:-101523363 None:intergenic
TGTGCTGTGTTAGGTTGTGA+AGG 0.525327 3:+101520589 MsG0380017857.01.T01:intron
ATTCTAAGGTTCAATGTGGA+TGG 0.533200 3:-101520205 None:intergenic
AAGAAGGTTTATGATTTACC+TGG 0.546770 3:+101520686 MsG0380017857.01.T01:CDS
AAAGAAAGCTCTGCAGCAGA+AGG 0.552066 3:+101523064 MsG0380017857.01.T01:CDS
AACGGTAAACCCCTTTCTAA+GGG 0.555197 3:+101520324 MsG0380017857.01.T01:CDS
GGAGTTTGTCTGCTTTGATG+TGG 0.556824 3:-101523201 None:intergenic
TGGTGACACAAAACTTGTAA+GGG 0.558331 3:+101523378 MsG0380017857.01.T01:three_prime_UTR
CTTCTTGGTTGGCTTCGATG+TGG 0.562372 3:-101523222 None:intergenic
ACGAATTAAAGGTCTACAGC+AGG 0.562539 3:-101523477 None:intergenic
TAAGGTTCAATGTGGATGGA+AGG 0.579955 3:-101520201 None:intergenic
ACAGGTTTCGAATCTTCAGA+AGG 0.581427 3:-101520246 None:intergenic
TTCTCGCTCCAAAGTTAAGA+GGG 0.585381 3:+101520407 MsG0380017857.01.T01:CDS
CAAAGTTAAGAGGGAACTCA+AGG 0.598766 3:+101520416 MsG0380017857.01.T01:CDS
TTTGGAGCGAGAAGCTGAAG+TGG 0.605696 3:-101520397 None:intergenic
GTCACCAACAACAAATGCCG+GGG 0.615591 3:-101523362 None:intergenic
GGTTGTTGTTACAGAAACGA+AGG 0.621147 3:+101520652 MsG0380017857.01.T01:CDS
AAACTTGTAAGGGGCACATG+AGG 0.627146 3:+101523388 MsG0380017857.01.T01:three_prime_UTR
ATCAATTCTAAGGTTCAATG+TGG 0.631276 3:-101520209 None:intergenic
CGAGAAGCTGAAGTGGCACG+AGG 0.633535 3:-101520390 None:intergenic
GAAACGTGATCCACCTGCAG+AGG 0.633728 3:+101520712 MsG0380017857.01.T01:CDS
ATCTGAAAGTTCGAGCTCTG+AGG 0.642346 3:+101523250 MsG0380017857.01.T01:CDS
AGGCTTGCTTCCTAAAGAGG+TGG 0.651439 3:+101523016 MsG0380017857.01.T01:CDS
GTTATGCAAACCTCTGCAGG+TGG 0.653027 3:-101520722 None:intergenic
GGTGACACAAAACTTGTAAG+GGG 0.653765 3:+101523379 MsG0380017857.01.T01:three_prime_UTR
ATGGAAGGTGAAGATGAACA+AGG 0.690504 3:-101520186 None:intergenic
TCACCAACAACAAATGCCGG+GGG 0.698115 3:-101523361 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTATATACAGTTTA+AGG + Chr3:101521814-101521833 MsG0380017857.01.T01:intron 10.0%
!! AGAACAATAAAAAAAAAACT+AGG - Chr3:101520535-101520554 None:intergenic 15.0%
!!! ATTACATTCTTTTAGATATT+TGG - Chr3:101522862-101522881 None:intergenic 15.0%
!!! CTTTTTTTTACTTTTCTTTT+GGG + Chr3:101522002-101522021 MsG0380017857.01.T01:intron 15.0%
!!! TTTTTTTTACTTTTCTTTTG+GGG + Chr3:101522003-101522022 MsG0380017857.01.T01:intron 15.0%
!! AAAATTGTTAAAGTCCTATT+TGG - Chr3:101521206-101521225 None:intergenic 20.0%
!! AATTGCAATTCATCATATTT+AGG + Chr3:101520944-101520963 MsG0380017857.01.T01:intron 20.0%
!! ATTAAGATGTTTATCCAAAT+AGG + Chr3:101521189-101521208 MsG0380017857.01.T01:intron 20.0%
!! ATTGCAATTCATCATATTTA+GGG + Chr3:101520945-101520964 MsG0380017857.01.T01:intron 20.0%
!! TTTCTTAATTGTAACAGATT+TGG - Chr3:101523132-101523151 None:intergenic 20.0%
!!! AAGCAATTTAAAATGATATG+AGG - Chr3:101522640-101522659 None:intergenic 20.0%
!!! AATAGGACTTTAACAATTTT+AGG + Chr3:101521206-101521225 MsG0380017857.01.T01:intron 20.0%
!!! AGCAATTTAAAATGATATGA+GGG - Chr3:101522639-101522658 None:intergenic 20.0%
!!! CTTTTTGTTATTTGATTTTG+AGG + Chr3:101522478-101522497 MsG0380017857.01.T01:intron 20.0%
!!! GCTTTTTTTTACTTTTCTTT+TGG + Chr3:101522001-101522020 MsG0380017857.01.T01:intron 20.0%
! AACAAAAAAGAAGAGAAAAG+TGG + Chr3:101523304-101523323 MsG0380017857.01.T01:CDS 25.0%
! AACATAAAAACGAACTGAAA+AGG - Chr3:101520774-101520793 None:intergenic 25.0%
! AATGTAGCTTATAGCTTATA+CGG + Chr3:101521071-101521090 MsG0380017857.01.T01:intron 25.0%
! AGCTACATTCATAAATTACA+TGG - Chr3:101521060-101521079 None:intergenic 25.0%
! ATATAATATATAACCCTGTG+AGG - Chr3:101521806-101521825 None:intergenic 25.0%
! CAAATCAAATATAGACAGTA+AGG - Chr3:101522141-101522160 None:intergenic 25.0%
! CGCAATTTAATATATTTCCA+GGG - Chr3:101521748-101521767 None:intergenic 25.0%
! GCAATTTAATATATTTCCAG+GGG - Chr3:101521747-101521766 None:intergenic 25.0%
! GTATAGATTACTTGTGAATT+CGG + Chr3:101521353-101521372 MsG0380017857.01.T01:intron 25.0%
! GTTTATATCCTTTGGATTAA+CGG + Chr3:101522224-101522243 MsG0380017857.01.T01:intron 25.0%
! TAAGTTTAATTGCTAGACTT+TGG + Chr3:101521237-101521256 MsG0380017857.01.T01:intron 25.0%
! TTGAAACATAAGACAAGTAT+AGG + Chr3:101522441-101522460 MsG0380017857.01.T01:intron 25.0%
! TTGCATAATTGACGAATTAA+AGG - Chr3:101523491-101523510 None:intergenic 25.0%
! TTTGTGAACAATCAATTCTA+AGG - Chr3:101520222-101520241 None:intergenic 25.0%
!! ATGTGTAATGACTTGTATTT+AGG + Chr3:101521840-101521859 MsG0380017857.01.T01:intron 25.0%
!! GCAATTTAAAATGATATGAG+GGG - Chr3:101522638-101522657 None:intergenic 25.0%
!! GTTAAGTTGTTTATATCCTT+TGG + Chr3:101522216-101522235 MsG0380017857.01.T01:intron 25.0%
!! TCTTTTTAACGGAAGAATTT+GGG - Chr3:101523169-101523188 None:intergenic 25.0%
!! TTCTTTTTAACGGAAGAATT+TGG - Chr3:101523170-101523189 None:intergenic 25.0%
!!! ACTTTAACAATTTTAGGAGT+TGG + Chr3:101521212-101521231 MsG0380017857.01.T01:intron 25.0%
!!! AGGTTGTCTTGTTTAAATAA+GGG - Chr3:101522770-101522789 None:intergenic 25.0%
!!! CTATTTTAGAAACGTATGTT+CGG + Chr3:101520553-101520572 MsG0380017857.01.T01:intron 25.0%
!!! GTTTGATTTGTTAACTATGA+AGG + Chr3:101522371-101522390 MsG0380017857.01.T01:intron 25.0%
!!! TTTTGTTGTTTTCTTGTCTT+AGG + Chr3:101522250-101522269 MsG0380017857.01.T01:intron 25.0%
AAAGAAGAAGGTTAAGAAAG+AGG + Chr3:101520625-101520644 MsG0380017857.01.T01:CDS 30.0%
AAAGTGCATTTGAATGGAAA+GGG - Chr3:101521593-101521612 None:intergenic 30.0%
AACAGAAACATAAGCAGAAT+AGG - Chr3:101520913-101520932 None:intergenic 30.0%
AAGAAGGTTTATGATTTACC+TGG + Chr3:101520686-101520705 MsG0380017857.01.T01:CDS 30.0%
AATCACTTCTGTCCTTAAAT+TGG - Chr3:101521878-101521897 None:intergenic 30.0%
AGAAGTGAAGAAAAAGAAGA+AGG + Chr3:101520613-101520632 MsG0380017857.01.T01:CDS 30.0%
AGAATTTACACAAACACAAG+GGG - Chr3:101521906-101521925 None:intergenic 30.0%
AGAGAATTTACACAAACACA+AGG - Chr3:101521908-101521927 None:intergenic 30.0%
ATAGAAGGAGTAAAAGCTAT+CGG + Chr3:101522835-101522854 MsG0380017857.01.T01:intron 30.0%
ATGCTCGTATTATAGTCTAA+TGG + Chr3:101522738-101522757 MsG0380017857.01.T01:intron 30.0%
CAAAAAGATATCCAAAACCA+AGG + Chr3:101520488-101520507 MsG0380017857.01.T01:CDS 30.0%
CAAAATAACCGTTAATCCAA+AGG - Chr3:101522235-101522254 None:intergenic 30.0%
CACTTCATAATTCACATTCA+TGG - Chr3:101521285-101521304 None:intergenic 30.0%
CTATCAGACAAGATAAGAAA+AGG - Chr3:101522819-101522838 None:intergenic 30.0%
GAAATGTGTATCATCAAAAC+TGG + Chr3:101522882-101522901 MsG0380017857.01.T01:intron 30.0%
GAAGGTTAAGAAAGTAAAGA+AGG + Chr3:101520670-101520689 MsG0380017857.01.T01:CDS 30.0%
GAGAATTTACACAAACACAA+GGG - Chr3:101521907-101521926 None:intergenic 30.0%
GCGCAATTTAATATATTTCC+AGG - Chr3:101521749-101521768 None:intergenic 30.0%
GTGTAAATTCTCTCAAATGA+TGG + Chr3:101521915-101521934 MsG0380017857.01.T01:intron 30.0%
TAAAACCAGAAGCCAATTTA+AGG + Chr3:101521863-101521882 MsG0380017857.01.T01:intron 30.0%
TAAATTACATGGAGAGCTTA+TGG - Chr3:101521049-101521068 None:intergenic 30.0%
TAACAAATCAAACACCTGTT+AGG - Chr3:101522364-101522383 None:intergenic 30.0%
TTATAGTATTGTGCTGTGTT+AGG + Chr3:101520580-101520599 MsG0380017857.01.T01:intron 30.0%
TTCTTATCTTGTCTGATAGA+AGG + Chr3:101522820-101522839 MsG0380017857.01.T01:intron 30.0%
TTGTACAAAGTGCATTTGAA+TGG - Chr3:101521599-101521618 None:intergenic 30.0%
! AGAATTTCGATTTTGTACCT+TGG - Chr3:101520508-101520527 None:intergenic 30.0%
! AGGTGGAGATTTTTATGTTT+TGG - Chr3:101522543-101522562 None:intergenic 30.0%
! ATGCTATTATTTTCCTCACA+GGG + Chr3:101521790-101521809 MsG0380017857.01.T01:intron 30.0%
! CAATTCATCATATTTAGGGT+CGG + Chr3:101520949-101520968 MsG0380017857.01.T01:intron 30.0%
! CTTTTTAACGGAAGAATTTG+GGG - Chr3:101523168-101523187 None:intergenic 30.0%
! TTTAAAATGATATGAGGGGA+TGG - Chr3:101522634-101522653 None:intergenic 30.0%
!! AAAAGTACTCTTTGAGTCTA+AGG - Chr3:101521697-101521716 None:intergenic 30.0%
!! ATCAATTCTAAGGTTCAATG+TGG - Chr3:101520212-101520231 None:intergenic 30.0%
!! CAGGTTGTCTTGTTTAAATA+AGG - Chr3:101522771-101522790 None:intergenic 30.0%
!! GATGATTCTGATTTTGACAT+TGG + Chr3:101523275-101523294 MsG0380017857.01.T01:CDS 30.0%
!! TCTTAGGTCAGAGTTATTTT+AGG + Chr3:101522266-101522285 MsG0380017857.01.T01:intron 30.0%
!! TTGGATATCTTTTTGGAGAT+AGG - Chr3:101520483-101520502 None:intergenic 30.0%
!! TTTTTAGAGAGATCCTTCTA+GGG + Chr3:101520817-101520836 MsG0380017857.01.T01:intron 30.0%
!!! ATAGAGCGTAGAAGATTTTT+TGG + Chr3:101522957-101522976 MsG0380017857.01.T01:intron 30.0%
!!! CGCTTATGTCTTTTTTTTCT+CGG - Chr3:101520135-101520154 None:intergenic 30.0%
!!! CTTGGTTTTGGATATCTTTT+TGG - Chr3:101520490-101520509 None:intergenic 30.0%
!!! GTTTGTTGGCTTCTTTTTAA+CGG - Chr3:101523180-101523199 None:intergenic 30.0%
!!! TTTTTTAGAGAGATCCTTCT+AGG + Chr3:101520816-101520835 MsG0380017857.01.T01:intron 30.0%
AAAGAGTGATGTCAGATCTA+GGG - Chr3:101522182-101522201 None:intergenic 35.0%
AACAAGCGAACAAATGCATA+AGG - Chr3:101522118-101522137 None:intergenic 35.0%
AACAATACAATGCCAGTAAC+TGG - Chr3:101522716-101522735 None:intergenic 35.0%
AATTGTCTTCCATTCACAGT+TGG - Chr3:101521410-101521429 None:intergenic 35.0%
ACAAATTCCAACTAGCGAAA+TGG + Chr3:101520862-101520881 MsG0380017857.01.T01:CDS 35.0%
ACAATACAATGCCAGTAACT+GGG - Chr3:101522715-101522734 None:intergenic 35.0%
ACAGCAGTTACAGAATTAAC+AGG - Chr3:101523098-101523117 None:intergenic 35.0%
ACTCGTAGATAATCATACAC+CGG + Chr3:101522046-101522065 MsG0380017857.01.T01:intron 35.0%
ACTGATAAAATGAGACCCTA+AGG - Chr3:101521506-101521525 None:intergenic 35.0%
ACTTTCAGATTTGTGCTTCT+TGG - Chr3:101523240-101523259 None:intergenic 35.0%
AGGCTCACATTCAAACATAA+AGG - Chr3:101521677-101521696 None:intergenic 35.0%
CAAAGTGCATTTGAATGGAA+AGG - Chr3:101521594-101521613 None:intergenic 35.0%
CATGGAGAATACACAGAAAA+AGG - Chr3:101522563-101522582 None:intergenic 35.0%
CCTGAAAACAAAACTATACG+AGG + Chr3:101521948-101521967 MsG0380017857.01.T01:intron 35.0%
GAGGTTTAATCATGCTGTTA+CGG + Chr3:101521967-101521986 MsG0380017857.01.T01:intron 35.0%
GGCTCACATTCAAACATAAA+GGG - Chr3:101521676-101521695 None:intergenic 35.0%
GTGTATGATTATCTACGAGT+TGG - Chr3:101522046-101522065 None:intergenic 35.0%
TAAATTGCTTGTGCTGTACA+TGG + Chr3:101522650-101522669 MsG0380017857.01.T01:intron 35.0%
TACTTGTGAATTCGGTTAAG+AGG + Chr3:101521361-101521380 MsG0380017857.01.T01:intron 35.0%
TCAGACAAGATAAGAAAAGG+CGG - Chr3:101522816-101522835 None:intergenic 35.0%
TGGTGACACAAAACTTGTAA+GGG + Chr3:101523378-101523397 MsG0380017857.01.T01:three_prime_UTR 35.0%
! CATGCTATTATTTTCCTCAC+AGG + Chr3:101521789-101521808 MsG0380017857.01.T01:intron 35.0%
! TCGATTTTGTACCTTGGTTT+TGG - Chr3:101520502-101520521 None:intergenic 35.0%
! TTGGTGACACAAAACTTGTA+AGG + Chr3:101523377-101523396 MsG0380017857.01.T01:three_prime_UTR 35.0%
!! ATTCTAAGGTTCAATGTGGA+TGG - Chr3:101520208-101520227 None:intergenic 35.0%
!!! AGTTTTGAACCCTTAGAAAG+GGG - Chr3:101520336-101520355 None:intergenic 35.0%
!!! CCTCGTATAGTTTTGTTTTC+AGG - Chr3:101521951-101521970 None:intergenic 35.0%
!!! GAGTTTTGAACCCTTAGAAA+GGG - Chr3:101520337-101520356 None:intergenic 35.0%
!!! TGAGTTTTGAACCCTTAGAA+AGG - Chr3:101520338-101520357 None:intergenic 35.0%
!!! TTGTCGTCTTGTTTTTTCAC+AGG - Chr3:101520267-101520286 None:intergenic 35.0%
!!! TTGTGACTTTTGAGACTGTT+TGG + Chr3:101521003-101521022 MsG0380017857.01.T01:intron 35.0%
!!! TTTTGCAATGTTTTTTCCCC+CGG + Chr3:101523345-101523364 MsG0380017857.01.T01:three_prime_UTR 35.0%
AAAAAAGCCGCAAAACCCAA+CGG + Chr3:101520306-101520325 MsG0380017857.01.T01:CDS 40.0%
AAACCAATTCTACACCGTAC+AGG - Chr3:101521540-101521559 None:intergenic 40.0%
AAATGCATAAGGCCTGATAG+TGG - Chr3:101522107-101522126 None:intergenic 40.0%
AACCAATTCTACACCGTACA+GGG - Chr3:101521539-101521558 None:intergenic 40.0%
AACGGTAAACCCCTTTCTAA+GGG + Chr3:101520324-101520343 MsG0380017857.01.T01:CDS 40.0%
AAGATAAGAAAAGGCGGGAA+AGG - Chr3:101522810-101522829 None:intergenic 40.0%
AATGACATGCCAACTGTGAA+TGG + Chr3:101521398-101521417 MsG0380017857.01.T01:intron 40.0%
ACAGGTTTCGAATCTTCAGA+AGG - Chr3:101520249-101520268 None:intergenic 40.0%
ACGAATTAAAGGTCTACAGC+AGG - Chr3:101523480-101523499 None:intergenic 40.0%
ACTTTCTTTGCCACCTCTTT+AGG - Chr3:101523029-101523048 None:intergenic 40.0%
AGGAAAATTCAATCTGCAGC+AGG - Chr3:101522790-101522809 None:intergenic 40.0%
AGGTGAAGATGAACAAGGTT+TGG - Chr3:101520184-101520203 None:intergenic 40.0%
AGTGAGCTTAATTCCCTGTA+CGG + Chr3:101521523-101521542 MsG0380017857.01.T01:intron 40.0%
ATATGAGGGGATGGAATAAC+AGG - Chr3:101522625-101522644 None:intergenic 40.0%
ATGGAAGGTGAAGATGAACA+AGG - Chr3:101520189-101520208 None:intergenic 40.0%
ATTGTTATGCAAACCTCTGC+AGG - Chr3:101520728-101520747 None:intergenic 40.0%
CAAAGAGTGATGTCAGATCT+AGG - Chr3:101522183-101522202 None:intergenic 40.0%
CAAAGTTAAGAGGGAACTCA+AGG + Chr3:101520416-101520435 MsG0380017857.01.T01:CDS 40.0%
CAAATCTGGTGAGTTCTCAA+CGG + Chr3:101520887-101520906 MsG0380017857.01.T01:intron 40.0%
CAGACAAGATAAGAAAAGGC+GGG - Chr3:101522815-101522834 None:intergenic 40.0%
CTCTCAAATGATGGTTGTGA+TGG + Chr3:101521924-101521943 MsG0380017857.01.T01:intron 40.0%
CTTGAGTTCCCTCTTAACTT+TGG - Chr3:101520418-101520437 None:intergenic 40.0%
GAAGGTTAAGAAAGAGGAAG+AGG + Chr3:101520631-101520650 MsG0380017857.01.T01:CDS 40.0%
GGAGAATACACAGAAAAAGG+TGG - Chr3:101522560-101522579 None:intergenic 40.0%
GGTGAAGATGAACAAGGTTT+GGG - Chr3:101520183-101520202 None:intergenic 40.0%
GGTGACACAAAACTTGTAAG+GGG + Chr3:101523379-101523398 MsG0380017857.01.T01:three_prime_UTR 40.0%
GTTAGGTAATTGCAACTGCA+AGG - Chr3:101522347-101522366 None:intergenic 40.0%
TAAGGTTCAATGTGGATGGA+AGG - Chr3:101520204-101520223 None:intergenic 40.0%
TAATATATTTCCAGGGGCCT+GGG - Chr3:101521741-101521760 None:intergenic 40.0%
TATGAGGGGATGGAATAACA+GGG - Chr3:101522624-101522643 None:intergenic 40.0%
TCAAACCTCCAAATGCCTTA+GGG + Chr3:101521488-101521507 MsG0380017857.01.T01:intron 40.0%
TCAGATTTGTGCTTCTTGGT+TGG - Chr3:101523236-101523255 None:intergenic 40.0%
TGCAGTTGCAATTACCTAAC+AGG + Chr3:101522347-101522366 MsG0380017857.01.T01:intron 40.0%
TGCTTTGATGTGGAGTTTGT+TGG - Chr3:101523194-101523213 None:intergenic 40.0%
TTAATATATTTCCAGGGGCC+TGG - Chr3:101521742-101521761 None:intergenic 40.0%
TTAGAAAGGGGTTTACCGTT+GGG - Chr3:101520324-101520343 None:intergenic 40.0%
TTCAAACCTCCAAATGCCTT+AGG + Chr3:101521487-101521506 MsG0380017857.01.T01:intron 40.0%
TTCTCGCTCCAAAGTTAAGA+GGG + Chr3:101520407-101520426 MsG0380017857.01.T01:CDS 40.0%
TTTGTTCCACGACACTTGTT+TGG + Chr3:101521451-101521470 MsG0380017857.01.T01:intron 40.0%
! AAATGAGACCCTAAGGCATT+TGG - Chr3:101521499-101521518 None:intergenic 40.0%
! ATGGTGATAGTGTTCTTGCA+AGG - Chr3:101521266-101521285 None:intergenic 40.0%
! GACATAAGCGATTCTGAAGA+AGG + Chr3:101520145-101520164 MsG0380017857.01.T01:five_prime_UTR 40.0%
! GGTTGTTGTTACAGAAACGA+AGG + Chr3:101520652-101520671 MsG0380017857.01.T01:CDS 40.0%
! GGTTTTGCTGATGTGTACAA+AGG + Chr3:101521555-101521574 MsG0380017857.01.T01:intron 40.0%
! TCTGTCCTTAAATTGGCTTC+TGG - Chr3:101521871-101521890 None:intergenic 40.0%
! TGGTGATAGTGTTCTTGCAA+GGG - Chr3:101521265-101521284 None:intergenic 40.0%
! TTATCTACGAGTTGGAATGC+TGG - Chr3:101522038-101522057 None:intergenic 40.0%
!! ATTTGTGCCATTTCGCTAGT+TGG - Chr3:101520872-101520891 None:intergenic 40.0%
AAAGAAAGCTCTGCAGCAGA+AGG + Chr3:101523064-101523083 MsG0380017857.01.T01:CDS 45.0%
AATTGCATGCCACCACTATC+AGG + Chr3:101522092-101522111 MsG0380017857.01.T01:intron 45.0%
ATCTGAAAGTTCGAGCTCTG+AGG + Chr3:101523250-101523269 MsG0380017857.01.T01:CDS 45.0%
ATGAGGGGATGGAATAACAG+GGG - Chr3:101522623-101522642 None:intergenic 45.0%
CAACGGTAAACCCCTTTCTA+AGG + Chr3:101520323-101520342 MsG0380017857.01.T01:CDS 45.0%
CTAGCGAAATGGCACAAATC+TGG + Chr3:101520873-101520892 MsG0380017857.01.T01:CDS 45.0%
CTTAGAAAGGGGTTTACCGT+TGG - Chr3:101520325-101520344 None:intergenic 45.0%
CTTCTCGCTCCAAAGTTAAG+AGG + Chr3:101520406-101520425 MsG0380017857.01.T01:CDS 45.0%
GGAGTTTGTCTGCTTTGATG+TGG - Chr3:101523204-101523223 None:intergenic 45.0%
GGGAAGAGAGACAAGAAAAG+AGG - Chr3:101522603-101522622 None:intergenic 45.0%
GTCTCGTAGAAAACCCTAGA+AGG - Chr3:101520833-101520852 None:intergenic 45.0%
GTGTCACCAACAACAAATGC+CGG - Chr3:101523367-101523386 None:intergenic 45.0%
GTTTCTCAGTCTCTTCTGAG+TGG - Chr3:101521328-101521347 None:intergenic 45.0%
TAGAACCGCTAGGAACTACA+GGG - Chr3:101522072-101522091 None:intergenic 45.0%
TGTCACCAACAACAAATGCC+GGG - Chr3:101523366-101523385 None:intergenic 45.0%
TTAGAACCGCTAGGAACTAC+AGG - Chr3:101522073-101522092 None:intergenic 45.0%
TTCCCTGTACGGTGTAGAAT+TGG + Chr3:101521534-101521553 MsG0380017857.01.T01:intron 45.0%
TTGTGTCGTAACCCAGTTAC+TGG + Chr3:101522701-101522720 MsG0380017857.01.T01:intron 45.0%
TTTGTCATCGTCGTCTTCGT+CGG - Chr3:101520460-101520479 None:intergenic 45.0%
! AAACTTGTAAGGGGCACATG+AGG + Chr3:101523388-101523407 MsG0380017857.01.T01:three_prime_UTR 45.0%
! ATCAGGCTTGCTTCCTAAAG+AGG + Chr3:101523013-101523032 MsG0380017857.01.T01:CDS 45.0%
! GCATGCAATTTAGAACCGCT+AGG - Chr3:101522082-101522101 None:intergenic 45.0%
! TACAGTCCAAACAAGTGTCG+TGG - Chr3:101521460-101521479 None:intergenic 45.0%
! TGATTGCAACTGCAGGTTGA+TGG + Chr3:101522989-101523008 MsG0380017857.01.T01:intron 45.0%
! TGTGCTGTGTTAGGTTGTGA+AGG + Chr3:101520589-101520608 MsG0380017857.01.T01:intron 45.0%
!! AACTGCAGGTTGATGGAATC+AGG + Chr3:101522996-101523015 MsG0380017857.01.T01:intron 45.0%
GTCACCAACAACAAATGCCG+GGG - Chr3:101523365-101523384 None:intergenic 50.0%
GTTATGCAAACCTCTGCAGG+TGG - Chr3:101520725-101520744 None:intergenic 50.0%
TATAACACCAAGCCTAGCCC+AGG + Chr3:101521721-101521740 MsG0380017857.01.T01:intron 50.0%
TCACCAACAACAAATGCCGG+GGG - Chr3:101523364-101523383 None:intergenic 50.0%
TCTCCATGACCTTTACCCCA+AGG + Chr3:101522575-101522594 MsG0380017857.01.T01:intron 50.0%
! ACGGAAGAATTTGGGGTAGC+TGG - Chr3:101523161-101523180 None:intergenic 50.0%
! AGGCTTGCTTCCTAAAGAGG+TGG + Chr3:101523016-101523035 MsG0380017857.01.T01:CDS 50.0%
! CGGAAGAATTTGGGGTAGCT+GGG - Chr3:101523160-101523179 None:intergenic 50.0%
! GCGTTACTGATTGCAACTGC+AGG + Chr3:101522982-101523001 MsG0380017857.01.T01:intron 50.0%
! GGGTTTACCGTTGGGTTTTG+CGG - Chr3:101520316-101520335 None:intergenic 50.0%
! TGAGACCCTAAGGCATTTGG+AGG - Chr3:101521496-101521515 None:intergenic 50.0%
! TTTGGAGCGAGAAGCTGAAG+TGG - Chr3:101520400-101520419 None:intergenic 50.0%
!! ACAAGAAAAGAGGCGCCTTG+GGG - Chr3:101522593-101522612 None:intergenic 50.0%
!! AGACAAGAAAAGAGGCGCCT+TGG - Chr3:101522595-101522614 None:intergenic 50.0%
!! CTTCTTGGTTGGCTTCGATG+TGG - Chr3:101523225-101523244 None:intergenic 50.0%
!! GACAAGAAAAGAGGCGCCTT+GGG - Chr3:101522594-101522613 None:intergenic 50.0%
!! TGCATAAGGCCTGATAGTGG+TGG - Chr3:101522104-101522123 None:intergenic 50.0%
!! TTTCCCCCGGCATTTGTTGT+TGG + Chr3:101523358-101523377 MsG0380017857.01.T01:three_prime_UTR 50.0%
AGCTGAAGTGGCACGAGGAA+TGG - Chr3:101520388-101520407 None:intergenic 55.0%
GAAACGTGATCCACCTGCAG+AGG + Chr3:101520712-101520731 MsG0380017857.01.T01:CDS 55.0%
GCTGAAGTGGCACGAGGAAT+GGG - Chr3:101520387-101520406 None:intergenic 55.0%
GGTGGATCACGTTTCTGTCC+AGG - Chr3:101520707-101520726 None:intergenic 55.0%
!! AAAGAGGCGCCTTGGGGTAA+AGG - Chr3:101522587-101522606 None:intergenic 55.0%
ACCGCTAGGAACTACAGGGC+CGG - Chr3:101522068-101522087 None:intergenic 60.0%
ACCGGCCCTGTAGTTCCTAG+CGG + Chr3:101522064-101522083 MsG0380017857.01.T01:intron 60.0%
CGAGAAGCTGAAGTGGCACG+AGG - Chr3:101520393-101520412 None:intergenic 60.0%
GCGCCTTGGGGTAAAGGTCA+TGG - Chr3:101522581-101522600 None:intergenic 60.0%
TATTTCCAGGGGCCTGGGCT+AGG - Chr3:101521736-101521755 None:intergenic 60.0%
! GTGGCACGAGGAATGGGTTC+AGG - Chr3:101520381-101520400 None:intergenic 60.0%
CCAAGCCTAGCCCAGGCCCC+TGG + Chr3:101521728-101521747 MsG0380017857.01.T01:intron 75.0%
! CCAGGGGCCTGGGCTAGGCT+TGG - Chr3:101521731-101521750 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 101520134 101523520 101520134 ID=MsG0380017857.01;Name=MsG0380017857.01
Chr3 mRNA 101520134 101523520 101520134 ID=MsG0380017857.01.T01;Parent=MsG0380017857.01;Name=MsG0380017857.01.T01;_AED=0.35;_eAED=0.35;_QI=109|1|1|1|1|1|4|189|265
Chr3 exon 101520134 101520509 101520134 ID=MsG0380017857.01.T01:exon:13103;Parent=MsG0380017857.01.T01
Chr3 exon 101520602 101520733 101520602 ID=MsG0380017857.01.T01:exon:13104;Parent=MsG0380017857.01.T01
Chr3 exon 101520824 101520894 101520824 ID=MsG0380017857.01.T01:exon:13105;Parent=MsG0380017857.01.T01
Chr3 exon 101523004 101523520 101523004 ID=MsG0380017857.01.T01:exon:13106;Parent=MsG0380017857.01.T01
Chr3 five_prime_UTR 101520134 101520242 101520134 ID=MsG0380017857.01.T01:five_prime_utr;Parent=MsG0380017857.01.T01
Chr3 CDS 101520243 101520509 101520243 ID=MsG0380017857.01.T01:cds;Parent=MsG0380017857.01.T01
Chr3 CDS 101520602 101520733 101520602 ID=MsG0380017857.01.T01:cds;Parent=MsG0380017857.01.T01
Chr3 CDS 101520824 101520894 101520824 ID=MsG0380017857.01.T01:cds;Parent=MsG0380017857.01.T01
Chr3 CDS 101523004 101523331 101523004 ID=MsG0380017857.01.T01:cds;Parent=MsG0380017857.01.T01
Chr3 three_prime_UTR 101523332 101523520 101523332 ID=MsG0380017857.01.T01:three_prime_utr;Parent=MsG0380017857.01.T01
Gene Sequence

>MsG0380017857.01.T01

ATGCCTTCTGAAGATTCGAAACCTGTGAAAAAACAAGACGACAACGACAAGATTTCTACTTTGAAAAAAGCCGCAAAACCCAACGGTAAACCCCTTTCTAAGGGTTCAAAACTCAAGAAATTATTCAAAGAAGAACCTGAACCCATTCCTCGTGCCACTTCAGCTTCTCGCTCCAAAGTTAAGAGGGAACTCAAGGACGATGATGATGATGACTCCGACGAAGACGACGATGACAAACCTATCTCCAAAAAGATATCCAAAACCAAGGTTGTGAAGGAAGAAGTGAAGAAAAAGAAGAAGGTTAAGAAAGAGGAAGAGGTTGTTGTTACAGAAACGAAGGTTAAGAAAGTAAAGAAGGTTTATGATTTACCTGGACAGAAACGTGATCCACCTGCAGAGAGAGATCCTTCTAGGGTTTTCTACGAGACTTTACATGAACAAATTCCAACTAGCGAAATGGCACAAATCTGGTTGATGGAATCAGGCTTGCTTCCTAAAGAGGTGGCAAAGAAAGTATTTGAGAAGAAGCAAAAGAAAGCTCTGCAGCAGAAGGTCTCTTCTCCTGTTAATTCTGTAACTGCTGTGAAGAAAAGCACCAAATCTGTTACAATTAAGAAAGAAAGCCCAGCTACCCCAAATTCTTCCGTTAAAAAGAAGCCAACAAACTCCACATCAAAGCAGACAAACTCCACATCGAAGCCAACCAAGAAGCACAAATCTGAAAGTTCGAGCTCTGAGGATGATGATTCTGATTTTGACATTGGTTCAGCAACAAAAAAGAAGAGAAAAGTGGCTTAA

Protein sequence

>MsG0380017857.01.T01

MPSEDSKPVKKQDDNDKISTLKKAAKPNGKPLSKGSKLKKLFKEEPEPIPRATSASRSKVKRELKDDDDDDSDEDDDDKPISKKISKTKVVKEEVKKKKKVKKEEEVVVTETKVKKVKKVYDLPGQKRDPPAERDPSRVFYETLHEQIPTSEMAQIWLMESGLLPKEVAKKVFEKKQKKALQQKVSSPVNSVTAVKKSTKSVTIKKESPATPNSSVKKKPTNSTSKQTNSTSKPTKKHKSESSSSEDDDSDFDIGSATKKKRKVA*