Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048822.01.T01 | XP_003607267.2 | 95.588 | 340 | 11 | 2 | 1 | 340 | 76 | 411 | 0 | 663 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048822.01.T01 | Q9LHG8 | 55.362 | 345 | 121 | 4 | 1 | 336 | 77 | 397 | 3.36E-116 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048822.01 | MsG0180001053.01 | 0.812072 | 5.094903e-51 | 3.207504e-48 |
| MsG0080048822.01 | MsG0180004562.01 | 0.811910 | 5.526598e-51 | 3.463878e-48 |
| MsG0080048822.01 | MsG0280009838.01 | 0.809682 | 1.676910e-50 | 9.910034e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0080048822.01 | MsG0480022104.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048822.01.T01 | MTR_4g075250 | 95.000 | 340 | 13 | 2 | 1 | 340 | 76 | 411 | 0.0 | 583 |
| MsG0080048822.01.T01 | MTR_5g075880 | 69.048 | 84 | 26 | 0 | 1 | 84 | 87 | 170 | 6.62e-32 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048822.01.T01 | AT3G12400 | 55.362 | 345 | 121 | 4 | 1 | 336 | 77 | 397 | 3.43e-117 | 345 |
| MsG0080048822.01.T01 | AT3G12400 | 55.263 | 342 | 120 | 4 | 1 | 333 | 77 | 394 | 1.15e-115 | 340 |
| MsG0080048822.01.T01 | AT3G12400 | 55.263 | 342 | 120 | 4 | 1 | 333 | 77 | 394 | 1.62e-115 | 342 |
| MsG0080048822.01.T01 | AT5G13860 | 50.592 | 338 | 118 | 3 | 1 | 336 | 77 | 367 | 4.79e-110 | 325 |
| MsG0080048822.01.T01 | AT2G38830 | 28.947 | 228 | 125 | 7 | 115 | 311 | 96 | 317 | 1.09e-16 | 80.1 |
Find 116 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAATCAAAGTTCTAATTT+TGG | 0.132572 | contig467end:-6554 | MsG0080048822.01.T01:CDS |
| CTGTTCCTTATTTGCATAAT+TGG | 0.167917 | contig467end:-6730 | MsG0080048822.01.T01:CDS |
| TTAGAACTTTGATTGGTATT+TGG | 0.178300 | contig467end:+6560 | MsG0080048822.01.T01:intergenic |
| GATTTACCCTAGTTCTAATT+TGG | 0.178763 | contig467end:-6708 | MsG0080048822.01.T01:CDS |
| CATCCTCATGTTAATCCTTC+TGG | 0.204058 | contig467end:-6761 | MsG0080048822.01.T01:CDS |
| CCCAATTGTTATCTGGCTTA+TGG | 0.211522 | contig467end:-6852 | MsG0080048822.01.T01:CDS |
| TGCTTTAGATAAGGGTGTTC+AGG | 0.272232 | contig467end:-6036 | MsG0080048822.01.T01:CDS |
| GGAGAATCAAGGGAAGAAAA+TGG | 0.279130 | contig467end:-6162 | MsG0080048822.01.T01:CDS |
| GCAGGCTCAGGTTGCGAATA+TGG | 0.279429 | contig467end:-5910 | MsG0080048822.01.T01:CDS |
| TAGATAAGGGTGTTCAGGTT+GGG | 0.287353 | contig467end:-6031 | MsG0080048822.01.T01:CDS |
| CGAGATGGCGCAGGGGAATA+AGG | 0.290860 | contig467end:+6449 | MsG0080048822.01.T01:intergenic |
| TAAATCCAATTATGCAAATA+AGG | 0.295767 | contig467end:+6725 | MsG0080048822.01.T01:intergenic |
| AGGGAAGAAAATGGGGAGTT+TGG | 0.299911 | contig467end:-6153 | MsG0080048822.01.T01:CDS |
| CTTTGATTGGTATTTGGATT+AGG | 0.305114 | contig467end:+6566 | MsG0080048822.01.T01:intergenic |
| TGATTGTACTTCTGCTGATT+TGG | 0.313474 | contig467end:-6078 | MsG0080048822.01.T01:CDS |
| ACAACATCCCAATTGTTATC+TGG | 0.318668 | contig467end:-6859 | MsG0080048822.01.T01:CDS |
| TTAGGGTTAGGGTTAGGATT+AGG | 0.335904 | contig467end:+6608 | MsG0080048822.01.T01:intergenic |
| GAGAATCAAGGGAAGAAAAT+GGG | 0.338918 | contig467end:-6161 | MsG0080048822.01.T01:CDS |
| TTTGATGAATACGGATGTTC+TGG | 0.345033 | contig467end:-6198 | MsG0080048822.01.T01:CDS |
| TTAGGATTAGGATTGGGATT+AGG | 0.352631 | contig467end:+6620 | MsG0080048822.01.T01:intergenic |
| TCCAAAATTAGAACTTTGAT+TGG | 0.354530 | contig467end:+6553 | MsG0080048822.01.T01:intergenic |
| GGTGAAATGGAGGGGTTGTT+TGG | 0.355099 | contig467end:-6320 | MsG0080048822.01.T01:CDS |
| TTTGGAACTAATCCTCCATC+TGG | 0.359655 | contig467end:-6536 | MsG0080048822.01.T01:CDS |
| AGTTAGAGCTGCTCAGTTGC+AGG | 0.360251 | contig467end:-5928 | MsG0080048822.01.T01:CDS |
| ACGCTTTATGCTTTAGATAA+GGG | 0.364897 | contig467end:-6044 | MsG0080048822.01.T01:CDS |
| TCCATAAGCCAGATAACAAT+TGG | 0.369758 | contig467end:+6851 | MsG0080048822.01.T01:intergenic |
| GCAAGATGAGATGGAGGGTT+TGG | 0.370726 | contig467end:-6240 | MsG0080048822.01.T01:CDS |
| GAAGACTAGAGAAGGTGAAA+TGG | 0.378989 | contig467end:-6333 | MsG0080048822.01.T01:CDS |
| AGCTGCTCAGTTGCAGGCTC+AGG | 0.393395 | contig467end:-5922 | MsG0080048822.01.T01:CDS |
| AGATAAGGGTGTTCAGGTTG+GGG | 0.397945 | contig467end:-6030 | MsG0080048822.01.T01:CDS |
| TTTGATGAGGATTAGGGTTA+GGG | 0.399829 | contig467end:+6597 | MsG0080048822.01.T01:intergenic |
| TACGCTTTATGCTTTAGATA+AGG | 0.408278 | contig467end:-6045 | MsG0080048822.01.T01:CDS |
| ATGTTCTGGAGGGTTGGTTG+AGG | 0.410858 | contig467end:-6184 | MsG0080048822.01.T01:CDS |
| TCATGTTAATCCTTCTGGAT+TGG | 0.419158 | contig467end:-6756 | MsG0080048822.01.T01:CDS |
| GCTGCTAGGAATCATCATTA+TGG | 0.423124 | contig467end:-5888 | MsG0080048822.01.T01:CDS |
| TGAGGATTAGGGTTAGGGTT+AGG | 0.423347 | contig467end:+6602 | MsG0080048822.01.T01:intergenic |
| GGTATTGAAGCAGAGGGAGG+AGG | 0.425612 | contig467end:-6288 | MsG0080048822.01.T01:CDS |
| GAGGGGTTGTTTGGTTTGCA+AGG | 0.429772 | contig467end:-6311 | MsG0080048822.01.T01:CDS |
| AGTACAATCAAGCATCTGTT+TGG | 0.430905 | contig467end:+6091 | MsG0080048822.01.T01:intergenic |
| TACCGTTTGATCAGTATTTG+AGG | 0.441585 | contig467end:-6004 | MsG0080048822.01.T01:CDS |
| AGGGGTTGTTTGGTTTGCAA+GGG | 0.461101 | contig467end:-6310 | MsG0080048822.01.T01:CDS |
| CTCCTCAAATACTGATCAAA+CGG | 0.461994 | contig467end:+6002 | MsG0080048822.01.T01:intergenic |
| GCCATCTCGGCCTACGCATA+CGG | 0.464143 | contig467end:-6435 | MsG0080048822.01.T01:CDS |
| TGTTCTGGAGGGTTGGTTGA+GGG | 0.466933 | contig467end:-6183 | MsG0080048822.01.T01:CDS |
| GTTAGGGTTAGGATTAGGAT+TGG | 0.469730 | contig467end:+6613 | MsG0080048822.01.T01:intergenic |
| TTAGGGTTAGGATTAGGATT+GGG | 0.470431 | contig467end:+6614 | MsG0080048822.01.T01:intergenic |
| CTTATTCCCCTGCGCCATCT+CGG | 0.471542 | contig467end:-6448 | MsG0080048822.01.T01:CDS |
| GGAGATGCAAGATGAGATGG+AGG | 0.478519 | contig467end:-6246 | MsG0080048822.01.T01:CDS |
| TTTAATAATCATATCCCTAG+TGG | 0.481041 | contig467end:+6790 | MsG0080048822.01.T01:intergenic |
| GACTAGAGAAGGTGAAATGG+AGG | 0.483262 | contig467end:-6330 | MsG0080048822.01.T01:CDS |
| GATAACAATTGGGATGTTGT+AGG | 0.486615 | contig467end:+6862 | MsG0080048822.01.T01:intergenic |
| TTAGATAAGGGTGTTCAGGT+TGG | 0.491802 | contig467end:-6032 | MsG0080048822.01.T01:CDS |
| GGGGTTGTTTGGTTTGCAAG+GGG | 0.495332 | contig467end:-6309 | MsG0080048822.01.T01:CDS |
| GGTTGGTTGAGGGAGAATCA+AGG | 0.499129 | contig467end:-6173 | MsG0080048822.01.T01:CDS |
| TGCAAGGGGTATTGAAGCAG+AGG | 0.500833 | contig467end:-6295 | MsG0080048822.01.T01:CDS |
| CCATCTGGGTATATTCATCC+TGG | 0.504818 | contig467end:-6521 | MsG0080048822.01.T01:CDS |
| AGATCAACCAAATTAGAACT+AGG | 0.514058 | contig467end:+6701 | MsG0080048822.01.T01:intergenic |
| GTGACGGATTGGTAGGTCAT+GGG | 0.514713 | contig467end:+6884 | MsG0080048822.01.T01:intergenic |
| GTTGGTTGAGGGAGAATCAA+GGG | 0.518369 | contig467end:-6172 | MsG0080048822.01.T01:CDS |
| CTATTACTATTAATCCTACC+AGG | 0.522290 | contig467end:+6503 | MsG0080048822.01.T01:intergenic |
| TGCGTAGGCCGAGATGGCGC+AGG | 0.522751 | contig467end:+6440 | MsG0080048822.01.T01:intergenic |
| GAGTGTGAGGGCGTTGTCGA+GGG | 0.528924 | contig467end:-5982 | MsG0080048822.01.T01:CDS |
| CCATAAGCCAGATAACAATT+GGG | 0.531355 | contig467end:+6852 | MsG0080048822.01.T01:intergenic |
| GAAGGAGATGCAAGATGAGA+TGG | 0.537662 | contig467end:-6249 | MsG0080048822.01.T01:CDS |
| AGAATCAAGGGAAGAAAATG+GGG | 0.538001 | contig467end:-6160 | MsG0080048822.01.T01:CDS |
| ACTAGAGAAGGTGAAATGGA+GGG | 0.549010 | contig467end:-6329 | MsG0080048822.01.T01:CDS |
| AATTGGGATGTTGTAGGTGA+CGG | 0.550105 | contig467end:+6868 | MsG0080048822.01.T01:intergenic |
| TCCGTATGCGTAGGCCGAGA+TGG | 0.550136 | contig467end:+6434 | MsG0080048822.01.T01:intergenic |
| CTAGAGAAGGTGAAATGGAG+GGG | 0.556264 | contig467end:-6328 | MsG0080048822.01.T01:CDS |
| TTTGGAGCAGCAGTTGCAGA+TGG | 0.557427 | contig467end:-6222 | MsG0080048822.01.T01:CDS |
| GCAGTTCTTCCACCGTGCTA+CGG | 0.559208 | contig467end:-5958 | MsG0080048822.01.T01:CDS |
| GGGGAGTTTGGAGAATGTTG+AGG | 0.560828 | contig467end:-6141 | MsG0080048822.01.T01:CDS |
| ATCAGTATTTGAGGAGTGTG+AGG | 0.563552 | contig467end:-5995 | MsG0080048822.01.T01:CDS |
| TTAATAATCATATCCCTAGT+GGG | 0.565302 | contig467end:+6791 | MsG0080048822.01.T01:intergenic |
| GATCAACCAAATTAGAACTA+GGG | 0.566055 | contig467end:+6702 | MsG0080048822.01.T01:intergenic |
| GGAGTGTGAGGGCGTTGTCG+AGG | 0.566472 | contig467end:-5983 | MsG0080048822.01.T01:CDS |
| GGTGACGGATTGGTAGGTCA+TGG | 0.566703 | contig467end:+6883 | MsG0080048822.01.T01:intergenic |
| TATTAACAAGCTTGTGGAGA+TGG | 0.569223 | contig467end:-6381 | MsG0080048822.01.T01:CDS |
| GGATGTTGTAGGTGACGGAT+TGG | 0.570458 | contig467end:+6873 | MsG0080048822.01.T01:intergenic |
| GTTGTAGGTGACGGATTGGT+AGG | 0.571249 | contig467end:+6877 | MsG0080048822.01.T01:intergenic |
| GTGTTTATGTTAATCCCACT+AGG | 0.576064 | contig467end:-6805 | MsG0080048822.01.T01:CDS |
| GAGTTTGGAGAATGTTGAGG+AGG | 0.585981 | contig467end:-6138 | MsG0080048822.01.T01:CDS |
| TTGGAACTAATCCTCCATCT+GGG | 0.587137 | contig467end:-6535 | MsG0080048822.01.T01:CDS |
| AGGTTGCGAATATGGCTGCT+AGG | 0.587435 | contig467end:-5902 | MsG0080048822.01.T01:CDS |
| GCGTAGGCCGAGATGGCGCA+GGG | 0.587625 | contig467end:+6441 | MsG0080048822.01.T01:intergenic |
| GATGAATACGGATGTTCTGG+AGG | 0.588358 | contig467end:-6195 | MsG0080048822.01.T01:CDS |
| GCAGGGGAATAAGGCGAAGG+AGG | 0.592529 | contig467end:+6458 | MsG0080048822.01.T01:intergenic |
| GAATGCTATTAACAAGCTTG+TGG | 0.599733 | contig467end:-6387 | MsG0080048822.01.T01:CDS |
| TGTTTATGTTAATCCCACTA+GGG | 0.610790 | contig467end:-6804 | MsG0080048822.01.T01:CDS |
| GGAACAGAAACCAATCCAGA+AGG | 0.619765 | contig467end:+6746 | None:intergenic |
| AATCATCATTATGGTAGCTG+AGG | 0.620092 | contig467end:-5879 | None:intergenic |
| ATACGGATGTTCTGGAGGGT+TGG | 0.622239 | contig467end:-6190 | MsG0080048822.01.T01:CDS |
| TAAACACGAGGAGGGTGACG+AGG | 0.622293 | contig467end:+6821 | MsG0080048822.01.T01:intergenic |
| TAACTTTAGCAGCCGTAGCA+CGG | 0.627369 | contig467end:+5946 | MsG0080048822.01.T01:intergenic |
| AGGGGTATTGAAGCAGAGGG+AGG | 0.628332 | contig467end:-6291 | MsG0080048822.01.T01:CDS |
| GCGTTGAGGAAGACTAGAGA+AGG | 0.630568 | contig467end:-6341 | MsG0080048822.01.T01:CDS |
| CTGGGTATATTCATCCTGGT+AGG | 0.631659 | contig467end:-6517 | MsG0080048822.01.T01:CDS |
| GGCGCAGGGGAATAAGGCGA+AGG | 0.637625 | contig467end:+6455 | MsG0080048822.01.T01:intergenic |
| CCAGGATGAATATACCCAGA+TGG | 0.642839 | contig467end:+6521 | MsG0080048822.01.T01:intergenic |
| TCAGTATTTGAGGAGTGTGA+GGG | 0.644098 | contig467end:-5994 | MsG0080048822.01.T01:CDS |
| GTAGGATCCTCCGTATGCGT+AGG | 0.651752 | contig467end:+6425 | MsG0080048822.01.T01:intergenic |
| GAGATGCAAGATGAGATGGA+GGG | 0.654104 | contig467end:-6245 | MsG0080048822.01.T01:CDS |
| ATGAATACGGATGTTCTGGA+GGG | 0.655370 | contig467end:-6194 | MsG0080048822.01.T01:CDS |
| GGATTAACATAAACACGAGG+AGG | 0.659983 | contig467end:+6812 | MsG0080048822.01.T01:intergenic |
| ATCTCGGCCTACGCATACGG+AGG | 0.661157 | contig467end:-6432 | MsG0080048822.01.T01:CDS |
| GCAAGGGGTATTGAAGCAGA+GGG | 0.664131 | contig467end:-6294 | MsG0080048822.01.T01:CDS |
| AAACACGAGGAGGGTGACGA+GGG | 0.665903 | contig467end:+6822 | MsG0080048822.01.T01:intergenic |
| GATGGTGCATAATGATGTGA+CGG | 0.671850 | contig467end:-6363 | MsG0080048822.01.T01:CDS |
| AATCCAGAAGGATTAACATG+AGG | 0.672810 | contig467end:+6758 | MsG0080048822.01.T01:intergenic |
| GGATGAATATACCCAGATGG+AGG | 0.673938 | contig467end:+6524 | MsG0080048822.01.T01:intergenic |
| ATAATGATGTGACGGCGTTG+AGG | 0.684564 | contig467end:-6355 | MsG0080048822.01.T01:CDS |
| CGTAGGCCGAGATGGCGCAG+GGG | 0.702882 | contig467end:+6442 | MsG0080048822.01.T01:intergenic |
| GATTAACATAAACACGAGGA+GGG | 0.706994 | contig467end:+6813 | MsG0080048822.01.T01:intergenic |
| CTTTAGCAGCCGTAGCACGG+TGG | 0.725711 | contig467end:+5949 | MsG0080048822.01.T01:intergenic |
| GCATACGGAGGATCCTACTG+AGG | 0.760419 | contig467end:-6420 | MsG0080048822.01.T01:CDS |
| GTGGGATTAACATAAACACG+AGG | 0.780290 | contig467end:+6809 | MsG0080048821.01.T01:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATCCAATTATGCAAATA+AGG | + | contig467end:6040-6059 | MsG0080048822.01.T01:intergenic | 20.0% |
| ! | TCCAAAATTAGAACTTTGAT+TGG | + | contig467end:6212-6231 | MsG0080048822.01.T01:intergenic | 25.0% |
| ! | TTAATAATCATATCCCTAGT+GGG | + | contig467end:5974-5993 | MsG0080048822.01.T01:intergenic | 25.0% |
| ! | TTAGAACTTTGATTGGTATT+TGG | + | contig467end:6205-6224 | MsG0080048822.01.T01:intergenic | 25.0% |
| ! | TTTAATAATCATATCCCTAG+TGG | + | contig467end:5975-5994 | MsG0080048822.01.T01:intergenic | 25.0% |
| !!! | ACCAATCAAAGTTCTAATTT+TGG | - | contig467end:6208-6227 | MsG0080048822.01.T01:CDS | 25.0% |
| !!! | TATGATTTTGATGAGGATTA+GGG | + | contig467end:6174-6193 | MsG0080048822.01.T01:intergenic | 25.0% |
| !!! | TTAGGATTATGATTTTGATG+AGG | + | contig467end:6181-6200 | MsG0080048822.01.T01:intergenic | 25.0% |
| !!! | TTATGATTTTGATGAGGATT+AGG | + | contig467end:6175-6194 | MsG0080048822.01.T01:intergenic | 25.0% |
| AGATCAACCAAATTAGAACT+AGG | + | contig467end:6064-6083 | MsG0080048822.01.T01:intergenic | 30.0% | |
| CTATTACTATTAATCCTACC+AGG | + | contig467end:6262-6281 | MsG0080048822.01.T01:intergenic | 30.0% | |
| CTTTGATTGGTATTTGGATT+AGG | + | contig467end:6199-6218 | MsG0080048822.01.T01:intergenic | 30.0% | |
| GATCAACCAAATTAGAACTA+GGG | + | contig467end:6063-6082 | MsG0080048822.01.T01:intergenic | 30.0% | |
| TGTTTATGTTAATCCCACTA+GGG | - | contig467end:5958-5977 | MsG0080048822.01.T01:CDS | 30.0% | |
| ! | ACGCTTTATGCTTTAGATAA+GGG | - | contig467end:6718-6737 | MsG0080048822.01.T01:CDS | 30.0% |
| ! | CTGTTCCTTATTTGCATAAT+TGG | - | contig467end:6032-6051 | MsG0080048822.01.T01:CDS | 30.0% |
| ! | TACGCTTTATGCTTTAGATA+AGG | - | contig467end:6717-6736 | MsG0080048822.01.T01:CDS | 30.0% |
| !! | CTTGCTTTGAGTTTGATTTT+TGG | - | contig467end:6088-6107 | MsG0080048822.01.T01:CDS | 30.0% |
| !! | GATTTACCCTAGTTCTAATT+TGG | - | contig467end:6054-6073 | MsG0080048822.01.T01:CDS | 30.0% |
| AATCCAGAAGGATTAACATG+AGG | + | contig467end:6007-6026 | MsG0080048821.01.T01:intergenic | 35.0% | |
| ACAACATCCCAATTGTTATC+TGG | - | contig467end:5903-5922 | MsG0080048822.01.T01:CDS | 35.0% | |
| AGAATCAAGGGAAGAAAATG+GGG | - | contig467end:6602-6621 | MsG0080048822.01.T01:CDS | 35.0% | |
| AGTACAATCAAGCATCTGTT+TGG | + | contig467end:6674-6693 | MsG0080048822.01.T01:intergenic | 35.0% | |
| CCATAAGCCAGATAACAATT+GGG | + | contig467end:5913-5932 | MsG0080048822.01.T01:intergenic | 35.0% | |
| CTCCTCAAATACTGATCAAA+CGG | + | contig467end:6763-6782 | MsG0080048822.01.T01:intergenic | 35.0% | |
| GAATGCTATTAACAAGCTTG+TGG | - | contig467end:6375-6394 | MsG0080048822.01.T01:CDS | 35.0% | |
| GAGAATCAAGGGAAGAAAAT+GGG | - | contig467end:6601-6620 | MsG0080048822.01.T01:CDS | 35.0% | |
| GATAACAATTGGGATGTTGT+AGG | + | contig467end:5903-5922 | MsG0080048822.01.T01:intergenic | 35.0% | |
| GATTAACATAAACACGAGGA+GGG | + | contig467end:5952-5971 | MsG0080048822.01.T01:intergenic | 35.0% | |
| GTGTTTATGTTAATCCCACT+AGG | - | contig467end:5957-5976 | MsG0080048822.01.T01:CDS | 35.0% | |
| TACCGTTTGATCAGTATTTG+AGG | - | contig467end:6758-6777 | MsG0080048822.01.T01:CDS | 35.0% | |
| TATTAACAAGCTTGTGGAGA+TGG | - | contig467end:6381-6400 | MsG0080048822.01.T01:CDS | 35.0% | |
| TCATGTTAATCCTTCTGGAT+TGG | - | contig467end:6006-6025 | MsG0080048822.01.T01:CDS | 35.0% | |
| TCCATAAGCCAGATAACAAT+TGG | + | contig467end:5914-5933 | MsG0080048822.01.T01:intergenic | 35.0% | |
| TTAGGATTAGGATTGGGATT+AGG | + | contig467end:6145-6164 | MsG0080048822.01.T01:intergenic | 35.0% | |
| TTAGGGTTAGGATTAGGATT+GGG | + | contig467end:6151-6170 | MsG0080048822.01.T01:intergenic | 35.0% | |
| TTTGATGAATACGGATGTTC+TGG | - | contig467end:6564-6583 | MsG0080048822.01.T01:CDS | 35.0% | |
| TTTGATGAGGATTAGGGTTA+GGG | + | contig467end:6168-6187 | MsG0080048822.01.T01:intergenic | 35.0% | |
| ! | TGATTGTACTTCTGCTGATT+TGG | - | contig467end:6684-6703 | MsG0080048822.01.T01:CDS | 35.0% |
| ! | TTTTGATGAGGATTAGGGTT+AGG | + | contig467end:6169-6188 | MsG0080048822.01.T01:intergenic | 35.0% |
| !!! | GCAGATGGTTTTGATGAATA+CGG | - | contig467end:6555-6574 | MsG0080048822.01.T01:CDS | 35.0% |
| !!! | GGTTTTGAATAATGGTGTGA+AGG | - | contig467end:6495-6514 | MsG0080048822.01.T01:CDS | 35.0% |
| AATTGGGATGTTGTAGGTGA+CGG | + | contig467end:5897-5916 | MsG0080048821.01.T01:intergenic | 40.0% | |
| ACTAGAGAAGGTGAAATGGA+GGG | - | contig467end:6433-6452 | MsG0080048822.01.T01:CDS | 40.0% | |
| CATCCTCATGTTAATCCTTC+TGG | - | contig467end:6001-6020 | MsG0080048822.01.T01:CDS | 40.0% | |
| CTACGTTGAGAAAAAAGAGG+TGG | + | contig467end:6121-6140 | MsG0080048822.01.T01:intergenic | 40.0% | |
| GAAGACTAGAGAAGGTGAAA+TGG | - | contig467end:6429-6448 | MsG0080048822.01.T01:CDS | 40.0% | |
| GATGGTGCATAATGATGTGA+CGG | - | contig467end:6399-6418 | MsG0080048822.01.T01:CDS | 40.0% | |
| GCTGCTAGGAATCATCATTA+TGG | - | contig467end:6874-6893 | MsG0080048822.01.T01:CDS | 40.0% | |
| GGAGAATCAAGGGAAGAAAA+TGG | - | contig467end:6600-6619 | MsG0080048822.01.T01:CDS | 40.0% | |
| GGATTAACATAAACACGAGG+AGG | + | contig467end:5953-5972 | MsG0080048822.01.T01:intergenic | 40.0% | |
| GGTCTACGTTGAGAAAAAAG+AGG | + | contig467end:6124-6143 | MsG0080048822.01.T01:intergenic | 40.0% | |
| GTGGGATTAACATAAACACG+AGG | + | contig467end:5956-5975 | MsG0080048822.01.T01:intergenic | 40.0% | |
| GTTAGGGTTAGGATTAGGAT+TGG | + | contig467end:6152-6171 | MsG0080048822.01.T01:intergenic | 40.0% | |
| TTAGGGTTAGGGTTAGGATT+AGG | + | contig467end:6157-6176 | MsG0080048822.01.T01:intergenic | 40.0% | |
| TTCCTCCTAAAAACCTCAGT+AGG | + | contig467end:6358-6377 | MsG0080048822.01.T01:intergenic | 40.0% | |
| TTGGAACTAATCCTCCATCT+GGG | - | contig467end:6227-6246 | MsG0080048822.01.T01:CDS | 40.0% | |
| ! | AGGATCCTACTGAGGTTTTT+AGG | - | contig467end:6350-6369 | MsG0080048822.01.T01:CDS | 40.0% |
| ! | ATCAGTATTTGAGGAGTGTG+AGG | - | contig467end:6767-6786 | MsG0080048822.01.T01:CDS | 40.0% |
| ! | ATGAATACGGATGTTCTGGA+GGG | - | contig467end:6568-6587 | MsG0080048822.01.T01:CDS | 40.0% |
| ! | CCCAATTGTTATCTGGCTTA+TGG | - | contig467end:5910-5929 | MsG0080048822.01.T01:CDS | 40.0% |
| ! | TCAGTATTTGAGGAGTGTGA+GGG | - | contig467end:6768-6787 | MsG0080048822.01.T01:CDS | 40.0% |
| ! | TTTGGAACTAATCCTCCATC+TGG | - | contig467end:6226-6245 | MsG0080048822.01.T01:CDS | 40.0% |
| !! | ATCCTACTGAGGTTTTTAGG+AGG | - | contig467end:6353-6372 | MsG0080048822.01.T01:CDS | 40.0% |
| !! | TAGATAAGGGTGTTCAGGTT+GGG | - | contig467end:6731-6750 | MsG0080048822.01.T01:CDS | 40.0% |
| !! | TGCTTTAGATAAGGGTGTTC+AGG | - | contig467end:6726-6745 | MsG0080048822.01.T01:CDS | 40.0% |
| !! | TTAGATAAGGGTGTTCAGGT+TGG | - | contig467end:6730-6749 | MsG0080048822.01.T01:CDS | 40.0% |
| !!! | AGGGAGGAGGTTTTGAATAA+TGG | - | contig467end:6487-6506 | MsG0080048822.01.T01:CDS | 40.0% |
| AGGGAAGAAAATGGGGAGTT+TGG | - | contig467end:6609-6628 | MsG0080048822.01.T01:CDS | 45.0% | |
| ATAATGATGTGACGGCGTTG+AGG | - | contig467end:6407-6426 | MsG0080048822.01.T01:CDS | 45.0% | |
| CCAGGATGAATATACCCAGA+TGG | + | contig467end:6244-6263 | MsG0080048822.01.T01:intergenic | 45.0% | |
| CCATCTGGGTATATTCATCC+TGG | - | contig467end:6241-6260 | MsG0080048822.01.T01:CDS | 45.0% | |
| CTAGAGAAGGTGAAATGGAG+GGG | - | contig467end:6434-6453 | MsG0080048822.01.T01:CDS | 45.0% | |
| CTGGGTATATTCATCCTGGT+AGG | - | contig467end:6245-6264 | MsG0080048822.01.T01:CDS | 45.0% | |
| GAAGGAGATGCAAGATGAGA+TGG | - | contig467end:6513-6532 | MsG0080048822.01.T01:CDS | 45.0% | |
| GACTAGAGAAGGTGAAATGG+AGG | - | contig467end:6432-6451 | MsG0080048822.01.T01:CDS | 45.0% | |
| GAGATGCAAGATGAGATGGA+GGG | - | contig467end:6517-6536 | MsG0080048822.01.T01:CDS | 45.0% | |
| GAGTTTGGAGAATGTTGAGG+AGG | - | contig467end:6624-6643 | MsG0080048822.01.T01:CDS | 45.0% | |
| GATGAATACGGATGTTCTGG+AGG | - | contig467end:6567-6586 | MsG0080048822.01.T01:CDS | 45.0% | |
| GGAACAGAAACCAATCCAGA+AGG | + | contig467end:6019-6038 | MsG0080048822.01.T01:intergenic | 45.0% | |
| GGATGAATATACCCAGATGG+AGG | + | contig467end:6241-6260 | MsG0080048822.01.T01:intergenic | 45.0% | |
| GTTGGTTGAGGGAGAATCAA+GGG | - | contig467end:6590-6609 | MsG0080048822.01.T01:CDS | 45.0% | |
| TAACTTTAGCAGCCGTAGCA+CGG | + | contig467end:6819-6838 | MsG0080048822.01.T01:intergenic | 45.0% | |
| TGAGGATTAGGGTTAGGGTT+AGG | + | contig467end:6163-6182 | MsG0080048822.01.T01:intergenic | 45.0% | |
| !! | AGATAAGGGTGTTCAGGTTG+GGG | - | contig467end:6732-6751 | MsG0080048822.01.T01:CDS | 45.0% |
| !! | AGGGGTTGTTTGGTTTGCAA+GGG | - | contig467end:6452-6471 | MsG0080048822.01.T01:CDS | 45.0% |
| AGGTTGCGAATATGGCTGCT+AGG | - | contig467end:6860-6879 | MsG0080048822.01.T01:CDS | 50.0% | |
| AGTTAGAGCTGCTCAGTTGC+AGG | - | contig467end:6834-6853 | MsG0080048822.01.T01:CDS | 50.0% | |
| GCAAGATGAGATGGAGGGTT+TGG | - | contig467end:6522-6541 | MsG0080048822.01.T01:CDS | 50.0% | |
| GCGTTGAGGAAGACTAGAGA+AGG | - | contig467end:6421-6440 | MsG0080048822.01.T01:CDS | 50.0% | |
| GGAGATGCAAGATGAGATGG+AGG | - | contig467end:6516-6535 | MsG0080048822.01.T01:CDS | 50.0% | |
| GGGGAGTTTGGAGAATGTTG+AGG | - | contig467end:6621-6640 | MsG0080048822.01.T01:CDS | 50.0% | |
| GGTGAAATGGAGGGGTTGTT+TGG | - | contig467end:6442-6461 | MsG0080048822.01.T01:CDS | 50.0% | |
| ! | GGTTGGTTGAGGGAGAATCA+AGG | - | contig467end:6589-6608 | MsG0080048822.01.T01:CDS | 50.0% |
| ! | TTTGGAGCAGCAGTTGCAGA+TGG | - | contig467end:6540-6559 | MsG0080048822.01.T01:CDS | 50.0% |
| !! | ATACGGATGTTCTGGAGGGT+TGG | - | contig467end:6572-6591 | MsG0080048822.01.T01:CDS | 50.0% |
| !! | ATGTTCTGGAGGGTTGGTTG+AGG | - | contig467end:6578-6597 | MsG0080048822.01.T01:CDS | 50.0% |
| !! | GAGGGGTTGTTTGGTTTGCA+AGG | - | contig467end:6451-6470 | MsG0080048822.01.T01:CDS | 50.0% |
| !! | GCAAGGGGTATTGAAGCAGA+GGG | - | contig467end:6468-6487 | MsG0080048822.01.T01:CDS | 50.0% |
| !! | GGATGTTGTAGGTGACGGAT+TGG | + | contig467end:5892-5911 | MsG0080048822.01.T01:intergenic | 50.0% |
| !! | GGGGTTGTTTGGTTTGCAAG+GGG | - | contig467end:6453-6472 | MsG0080048822.01.T01:CDS | 50.0% |
| !! | GTTGTAGGTGACGGATTGGT+AGG | + | contig467end:5888-5907 | MsG0080048822.01.T01:intergenic | 50.0% |
| !! | TGAGGAGGCTTTTGAGTGTG+TGG | - | contig467end:6639-6658 | MsG0080048822.01.T01:CDS | 50.0% |
| !! | TGCAAGGGGTATTGAAGCAG+AGG | - | contig467end:6467-6486 | MsG0080048822.01.T01:CDS | 50.0% |
| !! | TGTTCTGGAGGGTTGGTTGA+GGG | - | contig467end:6579-6598 | MsG0080048822.01.T01:CDS | 50.0% |
| AAACACGAGGAGGGTGACGA+GGG | + | contig467end:5943-5962 | MsG0080048821.01.T01:intergenic | 55.0% | |
| CTTATTCCCCTGCGCCATCT+CGG | - | contig467end:6314-6333 | MsG0080048822.01.T01:CDS | 55.0% | |
| GCAGTTCTTCCACCGTGCTA+CGG | - | contig467end:6804-6823 | MsG0080048822.01.T01:CDS | 55.0% | |
| GCATACGGAGGATCCTACTG+AGG | - | contig467end:6342-6361 | MsG0080048822.01.T01:CDS | 55.0% | |
| GTAGGATCCTCCGTATGCGT+AGG | + | contig467end:6340-6359 | MsG0080048822.01.T01:intergenic | 55.0% | |
| TAAACACGAGGAGGGTGACG+AGG | + | contig467end:5944-5963 | MsG0080048822.01.T01:intergenic | 55.0% | |
| ! | GCAGGCTCAGGTTGCGAATA+TGG | - | contig467end:6852-6871 | MsG0080048822.01.T01:CDS | 55.0% |
| ! | GGTATTGAAGCAGAGGGAGG+AGG | - | contig467end:6474-6493 | MsG0080048822.01.T01:CDS | 55.0% |
| !! | AGGGGTATTGAAGCAGAGGG+AGG | - | contig467end:6471-6490 | MsG0080048822.01.T01:CDS | 55.0% |
| AGCTGCTCAGTTGCAGGCTC+AGG | - | contig467end:6840-6859 | MsG0080048822.01.T01:CDS | 60.0% | |
| ATCTCGGCCTACGCATACGG+AGG | - | contig467end:6330-6349 | MsG0080048822.01.T01:CDS | 60.0% | |
| CGAGATGGCGCAGGGGAATA+AGG | + | contig467end:6316-6335 | MsG0080048822.01.T01:intergenic | 60.0% | |
| CTTTAGCAGCCGTAGCACGG+TGG | + | contig467end:6816-6835 | MsG0080048822.01.T01:intergenic | 60.0% | |
| GCAGGGGAATAAGGCGAAGG+AGG | + | contig467end:6307-6326 | MsG0080048822.01.T01:intergenic | 60.0% | |
| GCCATCTCGGCCTACGCATA+CGG | - | contig467end:6327-6346 | MsG0080048822.01.T01:CDS | 60.0% | |
| TCCGTATGCGTAGGCCGAGA+TGG | + | contig467end:6331-6350 | MsG0080048822.01.T01:intergenic | 60.0% | |
| !! | GAGTGTGAGGGCGTTGTCGA+GGG | - | contig467end:6780-6799 | MsG0080048822.01.T01:CDS | 60.0% |
| GGCGCAGGGGAATAAGGCGA+AGG | + | contig467end:6310-6329 | MsG0080048822.01.T01:intergenic | 65.0% | |
| !! | GGAGTGTGAGGGCGTTGTCG+AGG | - | contig467end:6779-6798 | MsG0080048822.01.T01:CDS | 65.0% |
| CGTAGGCCGAGATGGCGCAG+GGG | + | contig467end:6323-6342 | MsG0080048822.01.T01:intergenic | 70.0% | |
| GCGTAGGCCGAGATGGCGCA+GGG | + | contig467end:6324-6343 | MsG0080048822.01.T01:intergenic | 70.0% | |
| TGCGTAGGCCGAGATGGCGC+AGG | + | contig467end:6325-6344 | MsG0080048822.01.T01:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig467end | gene | 5881 | 6903 | 5881 | ID=MsG0080048822.01;Name=MsG0080048822.01 |
| contig467end | mRNA | 5881 | 6903 | 5881 | ID=MsG0080048822.01.T01;Parent=MsG0080048822.01;Name=MsG0080048822.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|340 |
| contig467end | exon | 5881 | 6903 | 5881 | ID=MsG0080048822.01.T01:exon:18489;Parent=MsG0080048822.01.T01 |
| contig467end | CDS | 5881 | 6903 | 5881 | ID=MsG0080048822.01.T01:cds;Parent=MsG0080048822.01.T01 |
| Gene Sequence |
| Protein sequence |
