AlfalfaGEDB | MsG0180001053.01

M. sativa cultivar ZhongmuNo.1 / MsG0180001053.01

KEGG: -
GO: GO:0004672 GO:0005524 GO:0006468
PFAM: PF00069

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001053.01.T01	XP_013466448.2	96.86	605	18	1	1	604	31	635	0	1228

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001053.01.T01	O04086	51.759	597	258	13	18	587	24	617	0	575

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001053.01.T01	A0A072VEP9	96.860	605	18	1	1	604	6	610	0.0	1226

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048345.01	MsG0180001053.01	0.824964	6.066938e-54	5.456112e-51
MsG0080048822.01	MsG0180001053.01	0.812072	5.094903e-51	3.207504e-48
MsG0180000019.01	MsG0180001053.01	0.877169	7.794447e-69	3.881423e-65
MsG0180000222.01	MsG0180001053.01	0.814712	1.340110e-51	9.058669e-49
MsG0180001050.01	MsG0180001053.01	0.868998	4.301936e-66	1.588364e-62
MsG0180001053.01	MsG0180003241.01	0.849297	3.538718e-60	6.678542e-57
MsG0180001053.01	MsG0180004562.01	0.895409	9.848518e-76	1.020608e-71
MsG0180001053.01	MsG0180004752.01	0.835727	1.418162e-56	1.749303e-53
MsG0180001053.01	MsG0180004762.01	0.817288	3.564781e-52	2.585299e-49
MsG0180001053.01	MsG0180005959.01	0.813640	2.310967e-51	1.517448e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001053.01.T01	MTR_1g029610	96.860	605	18	1	1	604	6	610	0.0	1226
MsG0180001053.01.T01	MTR_2g006910	54.839	620	243	14	1	585	6	623	0.0	640
MsG0180001053.01.T01	MTR_2g006910	54.839	620	243	14	1	585	6	623	0.0	640
MsG0180001053.01.T01	MTR_8g088780	50.977	614	262	14	3	578	5	617	0.0	584
MsG0180001053.01.T01	MTR_8g088760	45.101	592	277	13	12	578	16	584	1.90e-165	486
MsG0180001053.01.T01	MTR_1g089600	36.613	620	365	17	3	605	14	622	4.27e-121	373
MsG0180001053.01.T01	MTR_7g094100	37.719	570	333	12	15	573	18	576	3.82e-119	368
MsG0180001053.01.T01	MTR_7g094100	37.719	570	333	12	15	573	18	576	6.91e-119	368
MsG0180001053.01.T01	MTR_1g029600	78.431	204	43	1	1	204	6	208	1.27e-116	346
MsG0180001053.01.T01	MTR_2g103950	45.205	292	152	3	272	560	28	314	1.53e-80	258

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001053.01.T01	AT1G11050	51.759	597	258	13	18	587	24	617	0.0	575
MsG0180001053.01.T01	AT2G48010	39.206	579	333	9	3	573	7	574	1.03e-130	397
MsG0180001053.01.T01	AT1G29720	37.063	429	243	5	187	607	585	994	6.06e-80	273
MsG0180001053.01.T01	AT1G56140	39.547	397	212	7	175	570	605	974	1.06e-79	272
MsG0180001053.01.T01	AT1G56120	38.283	431	236	10	175	604	456	857	2.89e-79	268
MsG0180001053.01.T01	AT1G56120	38.710	434	230	11	175	604	622	1023	1.10e-78	269
MsG0180001053.01.T01	AT1G56120	38.710	434	230	11	175	604	604	1005	1.44e-78	269
MsG0180001053.01.T01	AT3G24550	43.195	338	174	6	272	603	268	593	3.75e-78	261
MsG0180001053.01.T01	AT3G24540	40.214	373	191	7	224	581	124	479	4.41e-78	256
MsG0180001053.01.T01	AT4G01330	44.746	295	155	3	269	560	147	436	1.70e-77	253

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Find 91 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTTTATAGTTT+TGG	0.237200	1:+15278681	MsG0180001053.01.T01:CDS
AAACAAGTAGGGACTAATTC+AGG	0.315353	1:-15277559	None:intergenic
AAAGCGAAAGTTGCTGATTT+TGG	0.205837	1:+15278552	MsG0180001053.01.T01:CDS
AACACTTGCAGATGGAACTT+TGG	0.463782	1:+15278179	MsG0180001053.01.T01:CDS
AACCATTTAGCTCCTGTATT+AGG	0.340012	1:-15278069	None:intergenic
AAGAATATGATTGGTCAAGG+TGG	0.651008	1:+15278135	MsG0180001053.01.T01:CDS
AAGTAGGGACTAATTCAGGT+TGG	0.589960	1:-15277555	None:intergenic
AATTCTTTGTGCTCATGCAA+TGG	0.562123	1:+15278884	MsG0180001053.01.T01:CDS
ACAAACACATCATACTGTGC+AGG	0.586395	1:+15277604	MsG0180001053.01.T01:CDS
ACAAGAGTAGCTGGTACATA+TGG	0.459572	1:+15278615	MsG0180001053.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAAGCAGTTAAAGATGAA+GGG	+	Chr1:15278826-15278845	MsG0180001053.01.T01:CDS	30.0%
GTTGCAAGTCATAATGTAAA+AGG	+	Chr1:15278318-15278337	MsG0180001053.01.T01:CDS	30.0%
TAGCACCATTAACTGATAAT+TGG	-	Chr1:15278395-15278414	None:intergenic	30.0%
TCAAAAGGGTCATCAAATAA+TGG	+	Chr1:15277892-15277911	MsG0180001053.01.T01:CDS	30.0%
TCATATATCAGAGCTTGAAA+AGG	+	Chr1:15278092-15278111	MsG0180001053.01.T01:CDS	30.0%
TGGTAACTTAAACTTCCATT+AGG	-	Chr1:15278375-15278394	None:intergenic	30.0%
AAACAAGTAGGGACTAATTC+AGG	-	Chr1:15277562-15277581	None:intergenic	35.0%
AATTCTTTGTGCTCATGCAA+TGG	+	Chr1:15278884-15278903	MsG0180001053.01.T01:CDS	35.0%
ATAGGAAATGGGATAAGATG+AGG	+	Chr1:15277992-15278011	MsG0180001053.01.T01:CDS	35.0%
ATTAAGACCTACTATTGCTG+AGG	+	Chr1:15278911-15278930	MsG0180001053.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	15277277	15279106	15277277	ID=MsG0180001053.01;Name=MsG0180001053.01
Chr1	mRNA	15277277	15279106	15277277	ID=MsG0180001053.01.T01;Parent=MsG0180001053.01;Name=MsG0180001053.01.T01;_AED=0.21;_eAED=0.21;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|609
Chr1	exon	15277277	15279106	15277277	ID=MsG0180001053.01.T01:exon:30765;Parent=MsG0180001053.01.T01
Chr1	CDS	15277277	15279106	15277277	ID=MsG0180001053.01.T01:cds;Parent=MsG0180001053.01.T01

Gene Sequence

>MsG0180001053.01.T01

ATGTTTCTTCTTCTCCTCTTCACCCTTTTCATAGCTACACCTTCTGCTTCTGCTGCATCATGTCCTATGGATCTAAGCTATGTTGAGACCTTTCCATGGGACTCATCATCATGCAGAGATCCAATTGACTCACAACACTGTTGCCAATCACTTCTTAGTCTCTTTGGTATAGGACTTGCAAAACATCTCAAAGAAACTTCAATATTTCAACTCCCAGATGAAAACACTTCCTCAACATGTTTGCAAGACTTCCAACTCAAGCTTTCTTCCTTAAGAATCCAACCTGAATTAGTCCCTACTTGTTTCAAAAACTCAACTCAGTTTGTCACAAACACATCATACTGTGCAGGTATCACAAACCTCACAGAATGGAGAGACAAAGTTGGTGTCATTAGTCCTTTAGACACTGCTTGTAATGGTGATTTGAGTTCTGAAACTAGCTGTGGCATTTGTACTGATGCTGGTTTCAAAGTCACTACTCAGCTTACAAGTATTGATCCAAAAAATGCAACTAAGTGTTTTTATTTTTCAATTTTATATGCTATTGGTGTTGTGAATAAATTTGGTCCTACACATCCTGAAACAGCTGGTTGTATACTTGGTATGCCACTTTCATCAAAAGGGTCATCAAATAATGGAAAAATTTTGAAACTTGTTTTTGGGTTAATAGGTGCTCTTGTTGGTGTTGTTCTAGCTTTTGTGCTTATAATTATGTATAGGAAATGGGATAAGATGAGGAAGGAGAATATTTATCACAGGTCAATTGAAAACAGTGTTAGAGACAGTGTTTTGCCTAATACAGGAGCTAAATGGTTTCATATATCAGAGCTTGAAAAGGCTACAAACAAGTTTTCACAGAAGAATATGATTGGTCAAGGTGGTGATGGTGTTGTTTACAAAGGAACACTTGCAGATGGAACTTTGGTTGCAGTGAAAGAAATTTTTGATTTGGATACTAGAGGTGATGAAGAGTTTATCTATGAAGTTGAGATTATTAGCAAAATTAAGCATAGGAATCTTCTTGCTTTAAGAGGTTGTTGTGTTGCAAGTCATAATGTAAAAGGTAAGAGAAGGTTTTTAGTTTATGATTATATGCCTAATGGAAGTTTAAGTTACCAATTATCAGTTAATGGTGCTAATAAGCTTACTTGGCCACAAAGGAAGAATATTATACTTGATGTTGCTAAAGGGCTAGCTTATTTGCATTATGAAATCAAACCGCCGATTTTTCATCGCGATATTAAGGCGACGAATATACTTTTGGATTCGAAAATGAAAGCGAAAGTTGCTGATTTTGGTTTGGCAAAACAAGGTAATGAAGGACAATCTCATCTCACAACAAGAGTAGCTGGTACATATGGTTATTTAGCACCTGAGTATGCTTTATATGGACAACTAACTGAGAAAAGTGATGTTTATAGTTTTGGCATTGTGATACTTGAGATAATGAGTGGTAGAAAAGTGCTTGATACAATGAATTCACCAGTTGTTTTGATCACTGATTGGGCTTGGACACTTGCAAAATCAGGTAAAGTTGATGAAATATTTGATCAAGCAGTTAAAGATGAAGGGCCAGAGAAAATCATGGAAAGGTTTGTGCTTGTTGGAATTCTTTGTGCTCATGCAATGGTTGCATTAAGACCTACTATTGCTGAGGCAATTAAGATGTTAGAAGGTGATATTGATATTCCTAATTTACCTGATAGGCCTGTTCCACTTGGTCATGAATCTTTTCAATCTTCTCTTTTGAATGGTATGCAAAGTGGAAGATCAACACCTTATTATAATTCTTATTCTACAAGTATGATTAGCAAAATTAGTTTCAAATGA

Protein sequence

>MsG0180001053.01.T01

MFLLLLFTLFIATPSASAASCPMDLSYVETFPWDSSSCRDPIDSQHCCQSLLSLFGIGLAKHLKETSIFQLPDENTSSTCLQDFQLKLSSLRIQPELVPTCFKNSTQFVTNTSYCAGITNLTEWRDKVGVISPLDTACNGDLSSETSCGICTDAGFKVTTQLTSIDPKNATKCFYFSILYAIGVVNKFGPTHPETAGCILGMPLSSKGSSNNGKILKLVFGLIGALVGVVLAFVLIIMYRKWDKMRKENIYHRSIENSVRDSVLPNTGAKWFHISELEKATNKFSQKNMIGQGGDGVVYKGTLADGTLVAVKEIFDLDTRGDEEFIYEVEIISKIKHRNLLALRGCCVASHNVKGKRRFLVYDYMPNGSLSYQLSVNGANKLTWPQRKNIILDVAKGLAYLHYEIKPPIFHRDIKATNILLDSKMKAKVADFGLAKQGNEGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDTMNSPVVLITDWAWTLAKSGKVDEIFDQAVKDEGPEKIMERFVLVGILCAHAMVALRPTIAEAIKMLEGDIDIPNLPDRPVPLGHESFQSSLLNGMQSGRSTPYYNSYSTSMISKISFK*