AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048955.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048955.01.T01 MTR_0493s0030 97.855 373 8 0 1 373 1 373 0.0 745
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048955.01.T01 AT1G74640 70.621 354 98 3 19 370 19 368 0.0 519

Find 46 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAACTGCAGGCGCCTTTA+AGG 0.104317 contig565end:-13101 MsG0080048955.01.T01:intergenic
CAATTCTTGCAACAGAATTT+TGG 0.177594 contig565end:+13514 MsG0080048955.01.T01:exon
AAAAGAAATATTGAAGAAAA+TGG 0.233121 contig565end:+13603 MsG0080048955.01.T01:exon
CCTTCAACTCTTTGCAGATT+TGG 0.235687 contig565end:+13324 MsG0080048955.01.T01:exon
ATGGCTGGTGTCACGTTATC+AGG 0.302525 contig565end:-13199 MsG0080048955.01.T01:intergenic
TCTTCTAAGAGGCACCTTAA+AGG 0.331435 contig565end:+13087 MsG0080048955.01.T01:exon
TTACCCGCGGCTTTCTTGAC+TGG 0.345149 contig565end:+13268 MsG0080048955.01.T01:exon
AACTCCTCACGGGATGTTAC+AGG 0.348170 contig565end:-13301 MsG0080048955.01.T01:intergenic
CAACTAAAGGGTCTCCTAAA+AGG 0.373750 contig565end:+13374 MsG0080048955.01.T01:exon
ACCTTAAAGGCGCCTGCAGT+TGG 0.374128 contig565end:+13100 MsG0080048955.01.T01:exon
TTAGTTGATACAACAAATAC+TGG 0.382699 contig565end:-13358 MsG0080048955.01.T01:intergenic
CCAAATCTGCAAAGAGTTGA+AGG 0.392385 contig565end:-13324 MsG0080048955.01.T01:intergenic
CCTTAAAGGCGCCTGCAGTT+GGG 0.416753 contig565end:+13101 MsG0080048955.01.T01:exon
GTATTTGTTGTATCAACTAA+AGG 0.441722 contig565end:+13361 MsG0080048955.01.T01:exon
TATTTGTTGTATCAACTAAA+GGG 0.442235 contig565end:+13362 MsG0080048955.01.T01:exon
GCTGAGATGGAAGCTCTTAA+CGG 0.459166 contig565end:+13403 MsG0080048955.01.T01:exon
AGCTCTTCCGCGACTAAAGC+AGG 0.462416 contig565end:-13487 MsG0080048955.01.T01:intergenic
AGGGTCTCCTAAAAGGTCTA+AGG 0.474040 contig565end:+13381 MsG0080048955.01.T01:exon
TCAACTCTTTGCAGATTTGG+AGG 0.476813 contig565end:+13327 MsG0080048955.01.T01:exon
TAAAAGGTCTAAGGCTGAGA+TGG 0.498747 contig565end:+13390 MsG0080048955.01.T01:exon
CAACTCTTTGCAGATTTGGA+GGG 0.500215 contig565end:+13328 MsG0080048955.01.T01:exon
GAAGCTCTTAACGGAGCTAA+AGG 0.503984 contig565end:+13412 MsG0080048955.01.T01:exon
CATGTGATTTGTACTGCGAT+TGG 0.504645 contig565end:-13165 MsG0080048955.01.T01:intergenic
TAAAGGAGTGAGCAAGTTTG+TGG 0.516133 contig565end:+13429 MsG0080048955.01.T01:exon
TGCATATCTGCTTTCGACAA+TGG 0.528904 contig565end:-13218 MsG0080048955.01.T01:intergenic
TGGTGTCACGTTATCAGGAT+TGG 0.532092 contig565end:-13194 MsG0080048955.01.T01:intergenic
GACAGGTATGGTCTTCTAAG+AGG 0.537611 contig565end:+13076 MsG0080048955.01.T01:intron
TACACCATCCACCCAACTGC+AGG 0.541976 contig565end:-13112 MsG0080048955.01.T01:intergenic
AGCAAGTTTGTGGAAGTGCC+TGG 0.543593 contig565end:+13439 MsG0080048955.01.T01:exon
GGCGCCTGCAGTTGGGTGGA+TGG 0.552084 contig565end:+13108 MsG0080048955.01.T01:exon
TGGTGCTCTTCTTCCACAAG+AGG 0.557293 contig565end:+13459 MsG0080048955.01.T01:exon
TATCTGCTTTCGACAATGGC+TGG 0.559916 contig565end:-13214 MsG0080048955.01.T01:intergenic
CACGGGATGTTACAGGGTCT+AGG 0.561594 contig565end:-13294 MsG0080048955.01.T01:intergenic
GAGTTGAAGGAACTCCTCAC+GGG 0.577784 contig565end:-13311 MsG0080048955.01.T01:intergenic
TCTTGTGGAAGAAGAGCACC+AGG 0.583551 contig565end:-13457 MsG0080048955.01.T01:intergenic
AGAGTTGAAGGAACTCCTCA+CGG 0.588545 contig565end:-13312 MsG0080048955.01.T01:intergenic
AAAGCAGGATACTCCTCTTG+TGG 0.594658 contig565end:-13472 MsG0080048955.01.T01:intergenic
TAAAGGCGCCTGCAGTTGGG+TGG 0.609424 contig565end:+13104 MsG0080048955.01.T01:exon
AGTCCAGTCAAGAAAGCCGC+GGG 0.612625 contig565end:-13271 MsG0080048955.01.T01:intergenic
ACTCCTCACGGGATGTTACA+GGG 0.624393 contig565end:-13300 MsG0080048955.01.T01:intergenic
GAGTCCAGTCAAGAAAGCCG+CGG 0.650624 contig565end:-13272 MsG0080048955.01.T01:intergenic
GTCGCTTAAAAGTTGACACA+TGG 0.670851 contig565end:+13541 MsG0080048955.01.T01:exon
GGAGTATCCTGCTTTAGTCG+CGG 0.676120 contig565end:+13480 MsG0080048955.01.T01:exon
AGGAGCACGTTACTTACCCG+CGG 0.688473 contig565end:+13255 MsG0080048955.01.T01:exon
AGACCCTGTAACATCCCGTG+AGG 0.736244 contig565end:+13297 MsG0080048955.01.T01:exon
TATGCATTGACAAAACGACA+AGG 0.775132 contig565end:+13235 MsG0080048955.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTATTTTTTAAT+TGG + contig565end:10264-10283 MsG0080048955.01.T01:intron 0.0%
!! AAAATGAAAGAAAAAAAAAA+GGG - contig565end:11313-11332 MsG0080048955.01.T01:intergenic 10.0%
!! CTAAAATATATTTACTAAAT+TGG + contig565end:11873-11892 MsG0080048955.01.T01:intron 10.0%
!! AAAAGAAATATTGAAGAAAA+TGG + contig565end:13603-13622 MsG0080048955.01.T01:exon 15.0%
!! AATATGGAAGAAAAAAAAAT+CGG - contig565end:11273-11292 MsG0080048955.01.T01:intergenic 15.0%
!! AGTAAAATGACAAAAATTTA+AGG - contig565end:10298-10317 MsG0080048955.01.T01:intergenic 15.0%
!! ATTAGATGGTAATATATAAA+AGG + contig565end:12874-12893 MsG0080048955.01.T01:intron 15.0%
!! GAAAATGAAAGAAAAAAAAA+AGG - contig565end:11314-11333 MsG0080048955.01.T01:intergenic 15.0%
!! GTTACTCTTAAATAAATAAA+AGG - contig565end:11093-11112 MsG0080048955.01.T01:intergenic 15.0%
!! TTAGATGGTAATATATAAAA+GGG + contig565end:12875-12894 MsG0080048955.01.T01:intron 15.0%
!!! GATTTTTTTTTAAAAGCAAT+TGG + contig565end:10319-10338 MsG0080048955.01.T01:intron 15.0%
!!! TATTATTTATAAGCTTGTTA+AGG - contig565end:12043-12062 MsG0080048955.01.T01:intergenic 15.0%
!!! TTTTTTTTTCTTCCATATTT+TGG + contig565end:11274-11293 MsG0080048955.01.T01:intron 15.0%
!! AAAAAAATGCTCATTGAAAA+GGG - contig565end:12814-12833 MsG0080048955.01.T01:intergenic 20.0%
!! AACTACCCAAAATAATTAAA+AGG - contig565end:11804-11823 MsG0080048955.01.T01:intergenic 20.0%
!! CTTAAATAAATAAAAGGCAA+GGG - contig565end:11087-11106 MsG0080048955.01.T01:intergenic 20.0%
!! GATTATTCATAATTCAAAGT+TGG + contig565end:10351-10370 MsG0080048955.01.T01:intron 20.0%
!! GATTTATACTCAATTTAAAG+AGG + contig565end:11241-11260 MsG0080048955.01.T01:intron 20.0%
!! TAAATAAATAACTGATAGAG+AGG - contig565end:10251-10270 MsG0080048955.01.T01:intergenic 20.0%
!! TAGATGGTAATATATAAAAG+GGG + contig565end:12876-12895 MsG0080048955.01.T01:intron 20.0%
!! TCTTAAATAAATAAAAGGCA+AGG - contig565end:11088-11107 MsG0080048955.01.T01:intergenic 20.0%
!! TGAAGAATGATATAATGAAA+AGG - contig565end:10007-10026 MsG0080048955.01.T01:intergenic 20.0%
!! TGATATAATGAAAAGGTTTA+AGG - contig565end:10000-10019 MsG0080048955.01.T01:intergenic 20.0%
!! TTAAGGTTAATAAAAAACCA+CGG - contig565end:9983-10002 MsG0080048955.01.T01:intergenic 20.0%
!! TTACATGTATATCTAATTGT+TGG + contig565end:10470-10489 MsG0080048955.01.T01:intron 20.0%
!!! ATTCCTCCTTTTAATTATTT+TGG + contig565end:11795-11814 MsG0080048955.01.T01:intron 20.0%
!!! GGTTTATTTTCTTTATTGAT+TGG + contig565end:12204-12223 MsG0080048955.01.T01:intron 20.0%
!!! TATTTGTTGTATCAACTAAA+GGG + contig565end:13362-13381 MsG0080048955.01.T01:exon 20.0%
!!! TATTTTCTTTATTGATTGGT+GGG + contig565end:12208-12227 MsG0080048955.01.T01:intron 20.0%
!!! TTATTTTCTTTATTGATTGG+TGG + contig565end:12207-12226 MsG0080048955.01.T01:intron 20.0%
!!! TTCCTCCTTTTAATTATTTT+GGG + contig565end:11796-11815 MsG0080048955.01.T01:intron 20.0%
! AAAAAATGCTCATTGAAAAG+GGG - contig565end:12813-12832 MsG0080048955.01.T01:intergenic 25.0%
! AAAAGCTACATAAAAGACTT+AGG - contig565end:12133-12152 MsG0080048955.01.T01:intergenic 25.0%
! AAAGAAGAAGATCATAAACA+TGG + contig565end:10520-10539 MsG0080048955.01.T01:intron 25.0%
! AAAGCTACATAAAAGACTTA+GGG - contig565end:12132-12151 MsG0080048955.01.T01:intergenic 25.0%
! ACGGTTAATCAACAAATTAA+TGG + contig565end:10439-10458 MsG0080048955.01.T01:intron 25.0%
! AGATGGTAATATATAAAAGG+GGG + contig565end:12877-12896 MsG0080048955.01.T01:intron 25.0%
! ATATTTGAGAAATTGTGCTA+AGG + contig565end:11901-11920 MsG0080048955.01.T01:intron 25.0%
! GAAAAAAATGCTCATTGAAA+AGG - contig565end:12815-12834 MsG0080048955.01.T01:intergenic 25.0%
! TACCCAAAATAATTAAAAGG+AGG - contig565end:11801-11820 MsG0080048955.01.T01:intergenic 25.0%
! TATTTGAGAAATTGTGCTAA+GGG + contig565end:11902-11921 MsG0080048955.01.T01:intron 25.0%
! TGTTAAACTAGACAACAATT+TGG + contig565end:12626-12645 MsG0080048955.01.T01:intron 25.0%
!! CATTTTAGATCAGTATAGTT+CGG + contig565end:11726-11745 MsG0080048955.01.T01:intron 25.0%
!! TAAGTCTTTTATGTAGCTTT+TGG + contig565end:12132-12151 MsG0080048955.01.T01:intron 25.0%
!! TTAGTTGATACAACAAATAC+TGG - contig565end:13361-13380 MsG0080048955.01.T01:intergenic 25.0%
!!! GATTTCTAGTTTCTATTAGA+TGG + contig565end:12860-12879 MsG0080048955.01.T01:intron 25.0%
!!! GTATTTGTTGTATCAACTAA+AGG + contig565end:13361-13380 MsG0080048955.01.T01:exon 25.0%
!!! TTTTTCAGTTGAGAAGTTTA+TGG + contig565end:11849-11868 MsG0080048955.01.T01:intron 25.0%
AAAACAAGTTATCACCTATC+AGG - contig565end:13029-13048 MsG0080048954.01.T01:intergenic 30.0%
AAGAGACATTGGAATAATCA+AGG - contig565end:10188-10207 MsG0080048954.01.T01:intergenic 30.0%
AATACAATTCCTAATGTGCT+TGG + contig565end:12163-12182 MsG0080048955.01.T01:intron 30.0%
AGAGACATTGGAATAATCAA+GGG - contig565end:10187-10206 MsG0080048955.01.T01:intergenic 30.0%
ATAGTTATTCTCACCTTCAA+TGG - contig565end:10228-10247 MsG0080048955.01.T01:intergenic 30.0%
CCATGATTTGAAAACTATAC+TGG - contig565end:12374-12393 MsG0080048955.01.T01:intergenic 30.0%
CTAAAATAAGCCAATCCAAA+CGG + contig565end:12105-12124 MsG0080048955.01.T01:intron 30.0%
GAAGAAAAAAAAATCGGATC+TGG - contig565end:11267-11286 MsG0080048955.01.T01:intergenic 30.0%
GATCTACAGTTAACTATTGT+TGG + contig565end:12289-12308 MsG0080048955.01.T01:intron 30.0%
GTGACATATTCAACTAATCA+TGG - contig565end:12565-12584 MsG0080048955.01.T01:intergenic 30.0%
TAGTTATTCTCACCTTCAAT+GGG - contig565end:10227-10246 MsG0080048955.01.T01:intergenic 30.0%
TCAGCATTGTAATCAATCTT+TGG - contig565end:11574-11593 MsG0080048955.01.T01:intergenic 30.0%
TGATTTGAAAACTATACTGG+TGG - contig565end:12371-12390 MsG0080048955.01.T01:intergenic 30.0%
TGCAAAATTCCATCAGATAA+CGG - contig565end:12441-12460 MsG0080048955.01.T01:intergenic 30.0%
TTATTATGAGGAACATGTGA+AGG + contig565end:11384-11403 MsG0080048955.01.T01:CDS 30.0%
! CAATTCTTGCAACAGAATTT+TGG + contig565end:13514-13533 MsG0080048955.01.T01:exon 30.0%
! CCAGTATAGTTTTCAAATCA+TGG + contig565end:12371-12390 MsG0080048955.01.T01:intron 30.0%
! TCCAATGATTGTCTTTTGTT+TGG + contig565end:12513-12532 MsG0080048955.01.T01:intron 30.0%
! TGGCATCATCAAGATATTTT+GGG - contig565end:11425-11444 MsG0080048955.01.T01:intergenic 30.0%
! TTGGCATCATCAAGATATTT+TGG - contig565end:11426-11445 MsG0080048955.01.T01:intergenic 30.0%
! TTTATTGATTGGTGGGTATT+AGG + contig565end:12215-12234 MsG0080048955.01.T01:intron 30.0%
!! AACAATTTGGTGATTTTTGG+TGG + contig565end:12639-12658 MsG0080048955.01.T01:CDS 30.0%
!! ATCATCAAGATATTTTGGGA+AGG - contig565end:11421-11440 MsG0080048955.01.T01:intergenic 30.0%
!! CCAATGATTGTCTTTTGTTT+GGG + contig565end:12514-12533 MsG0080048955.01.T01:intron 30.0%
!! GACAACAATTTGGTGATTTT+TGG + contig565end:12636-12655 MsG0080048955.01.T01:intron 30.0%
!!! TTATTTTGGGTAGTTTCTCT+TGG + contig565end:11809-11828 MsG0080048955.01.T01:intron 30.0%
AAAACAACATCCATAGACCT+AGG - contig565end:11014-11033 MsG0080048954.01.T01:intergenic 35.0%
AATCCCTATCTAACTCCTAA+AGG + contig565end:11136-11155 MsG0080048955.01.T01:intron 35.0%
AGCTTTACACAAACCTCAAA+TGG - contig565end:10381-10400 MsG0080048955.01.T01:intergenic 35.0%
AGTTATTCTCACCTTCAATG+GGG - contig565end:10226-10245 MsG0080048955.01.T01:intergenic 35.0%
ATAAACAGAGTGAGAGAGAA+AGG - contig565end:10130-10149 MsG0080048955.01.T01:intergenic 35.0%
ATAACAATGTTGTGTCTCCT+AGG + contig565end:10994-11013 MsG0080048955.01.T01:intron 35.0%
ATACTGGTGGTTCATTGAAT+CGG - contig565end:12358-12377 MsG0080048955.01.T01:intergenic 35.0%
ATCATAACAACAGAGAATCG+TGG + contig565end:10682-10701 MsG0080048955.01.T01:intron 35.0%
ATGTTTCTTCCGTTATCTGA+TGG + contig565end:12429-12448 MsG0080048955.01.T01:intron 35.0%
ATTATGCCTGAGCCAAAATA+TGG - contig565end:11289-11308 MsG0080048955.01.T01:intergenic 35.0%
CCATTTGCGTTTAACACTTT+AGG + contig565end:10918-10937 MsG0080048955.01.T01:intron 35.0%
CCCAAACAAAAGACAATCAT+TGG - contig565end:12517-12536 MsG0080048955.01.T01:intergenic 35.0%
CTTGTTGACATCTAAATGCT+CGG + contig565end:12941-12960 MsG0080048955.01.T01:intron 35.0%
GAACGTGAAAAACGAGAAAT+CGG + contig565end:10615-10634 MsG0080048955.01.T01:intron 35.0%
GATTTCATCAATTCACCCTA+TGG + contig565end:11616-11635 MsG0080048955.01.T01:CDS 35.0%
GCTTTACACAAACCTCAAAT+GGG - contig565end:10380-10399 MsG0080048955.01.T01:intergenic 35.0%
GTCTTTGTGACTAACATTGT+TGG + contig565end:12603-12622 MsG0080048955.01.T01:intron 35.0%
GTGTAAAGGTTAGAACTTGA+AGG - contig565end:10093-10112 MsG0080048955.01.T01:intergenic 35.0%
TAAACAGAGTGAGAGAGAAA+GGG - contig565end:10129-10148 MsG0080048955.01.T01:intergenic 35.0%
TATGTCACAAACAACCTGAT+AGG + contig565end:13012-13031 MsG0080048955.01.T01:intron 35.0%
TCAATGCTACAGTGATCAAT+TGG - contig565end:12842-12861 MsG0080048955.01.T01:intergenic 35.0%
TGAAATTCTGCATCCTCTAA+TGG + contig565end:10038-10057 MsG0080048955.01.T01:exon 35.0%
TGACGTCTTGGAAAAATTTC+TGG + contig565end:11591-11610 MsG0080048955.01.T01:CDS 35.0%
TGCCATATAGAAAGAGTTAG+CGG + contig565end:11049-11068 MsG0080048955.01.T01:intron 35.0%
TGTACTTGTTTCATTGTTGC+TGG + contig565end:12252-12271 MsG0080048955.01.T01:intron 35.0%
TTCTTAAACCCTTGAAGATC+CGG + contig565end:10151-10170 MsG0080048955.01.T01:CDS 35.0%
! AACTCCTTTAGGAGTTAGAT+AGG - contig565end:11143-11162 MsG0080048955.01.T01:intergenic 35.0%
! AAGTCTGAAGTGAGTAATGA+CGG + contig565end:10420-10439 MsG0080048955.01.T01:intron 35.0%
! ACTCCTTTAGGAGTTAGATA+GGG - contig565end:11142-11161 MsG0080048955.01.T01:intergenic 35.0%
! CCTAAAGTGTTAAACGCAAA+TGG - contig565end:10921-10940 MsG0080048955.01.T01:intergenic 35.0%
! CTTCTTTTGATCCATGGATT+CGG - contig565end:10507-10526 MsG0080048955.01.T01:intergenic 35.0%
! GATCTTCTTCTTTTGATCCA+TGG - contig565end:10513-10532 MsG0080048955.01.T01:intergenic 35.0%
! GATTAGGCCAACAAATTTTC+TGG + contig565end:10717-10736 MsG0080048955.01.T01:intron 35.0%
! TATGCATTGACAAAACGACA+AGG + contig565end:13235-13254 MsG0080048955.01.T01:exon 35.0%
!! ATCAGATAACGGAAGAAACA+TGG - contig565end:12430-12449 MsG0080048955.01.T01:intergenic 35.0%
!! CCAACAAATTTTCTGGTGTA+CGG + contig565end:10724-10743 MsG0080048955.01.T01:intron 35.0%
!! GTTTGCGAAATTTGGTGTAA+AGG - contig565end:10107-10126 MsG0080048955.01.T01:intergenic 35.0%
!! TGTGTAAAGCTTGTTGAATC+TGG + contig565end:10390-10409 MsG0080048955.01.T01:intron 35.0%
!!! AATTTGGTGATTTTTGGTGG+AGG + contig565end:12642-12661 MsG0080048955.01.T01:CDS 35.0%
!!! ATTTGGTGATTTTTGGTGGA+GGG + contig565end:12643-12662 MsG0080048955.01.T01:CDS 35.0%
!!! TTTCTTCCATATTTTGGCTC+AGG + contig565end:11280-11299 MsG0080048955.01.T01:intron 35.0%
AACAGTGCTCACATCAGAAA+TGG - contig565end:11449-11468 MsG0080048954.01.T01:intergenic 40.0%
AATTCCTAATGTGCTTGGCA+GGG + contig565end:12168-12187 MsG0080048955.01.T01:intron 40.0%
AATTGTGCTAAGGGTCTGTT+TGG + contig565end:11911-11930 MsG0080048955.01.T01:intron 40.0%
ACCATACCTGTCAAGTTCAT+AGG - contig565end:13068-13087 MsG0080048955.01.T01:intergenic 40.0%
ACCGCACTACTATTGTTGAT+TGG + contig565end:11524-11543 MsG0080048955.01.T01:CDS 40.0%
ACTTTGACCCCACAATTTAC+AGG - contig565end:12479-12498 MsG0080048955.01.T01:intergenic 40.0%
AGGAAGGAAACATGCATGTT+TGG + contig565end:10753-10772 MsG0080048955.01.T01:intron 40.0%
AGGTTAGAACTTGAAGGTGA+AGG - contig565end:10087-10106 MsG0080048955.01.T01:intergenic 40.0%
ATGACCTCTCCTGTAAATTG+TGG + contig565end:12467-12486 MsG0080048955.01.T01:intron 40.0%
CAACTAAAGGGTCTCCTAAA+AGG + contig565end:13374-13393 MsG0080048955.01.T01:exon 40.0%
CAACTCTTTGCAGATTTGGA+GGG + contig565end:13328-13347 MsG0080048955.01.T01:exon 40.0%
CATATAGAAAGAGTTAGCGG+CGG + contig565end:11052-11071 MsG0080048955.01.T01:intron 40.0%
CATTGAATCGGTGAAAACAG+TGG - contig565end:12346-12365 MsG0080048955.01.T01:intergenic 40.0%
CCAAATCTGCAAAGAGTTGA+AGG - contig565end:13327-13346 MsG0080048955.01.T01:intergenic 40.0%
CCATACCTGTCAAGTTCATA+GGG - contig565end:13067-13086 MsG0080048955.01.T01:intergenic 40.0%
CCGTACACCAGAAAATTTGT+TGG - contig565end:10727-10746 MsG0080048955.01.T01:intergenic 40.0%
CCTTCAACTCTTTGCAGATT+TGG + contig565end:13324-13343 MsG0080048955.01.T01:exon 40.0%
GAAGACATTGCTCAACGTAA+TGG + contig565end:11490-11509 MsG0080048955.01.T01:CDS 40.0%
GAATCTCGGCCAAATACAAT+AGG - contig565end:12762-12781 MsG0080048955.01.T01:intergenic 40.0%
GAGAAAGGGTTTGCGAAATT+TGG - contig565end:10115-10134 MsG0080048955.01.T01:intergenic 40.0%
GCATCAAATTGGTGAATGCA+CGG + contig565end:10657-10676 MsG0080048955.01.T01:intron 40.0%
GCCAATCAACAATAGTAGTG+CGG - contig565end:11528-11547 MsG0080048955.01.T01:intergenic 40.0%
GTCGCTTAAAAGTTGACACA+TGG + contig565end:13541-13560 MsG0080048955.01.T01:exon 40.0%
GTTTCATTGTTGCTGGTACT+TGG + contig565end:12259-12278 MsG0080048955.01.T01:intron 40.0%
TAAAAGACTTAGGGTCCGTT+TGG - contig565end:12123-12142 MsG0080048955.01.T01:intergenic 40.0%
TAAAGGAGTGAGCAAGTTTG+TGG + contig565end:13429-13448 MsG0080048955.01.T01:exon 40.0%
TATGGTCCAGTAAAACAACC+AGG + contig565end:11634-11653 MsG0080048955.01.T01:CDS 40.0%
TCAACTCTTTGCAGATTTGG+AGG + contig565end:13327-13346 MsG0080048955.01.T01:exon 40.0%
TCGGCCAAATACAATAGGAA+GGG - contig565end:12757-12776 MsG0080048955.01.T01:intergenic 40.0%
TCTTAAACCCTTGAAGATCC+GGG + contig565end:10152-10171 MsG0080048955.01.T01:CDS 40.0%
TGACAAATCTTCCCCATTGA+AGG + contig565end:10212-10231 MsG0080048955.01.T01:CDS 40.0%
TGACCTCTCCTGTAAATTGT+GGG + contig565end:12468-12487 MsG0080048955.01.T01:intron 40.0%
TGATTACAATGCTGACGTCT+TGG + contig565end:11579-11598 MsG0080048955.01.T01:CDS 40.0%
TGCATATCTGCTTTCGACAA+TGG - contig565end:13221-13240 MsG0080048955.01.T01:intergenic 40.0%
TTGATGCTCGTGCATCAAAT+TGG + contig565end:10646-10665 MsG0080048955.01.T01:intron 40.0%
TTGTTTCCATGCTGGAATCT+CGG - contig565end:12776-12795 MsG0080048955.01.T01:intergenic 40.0%
TTTGTCACTGGAAGAGACAT+TGG - contig565end:10199-10218 MsG0080048955.01.T01:intergenic 40.0%
! ACTACTATTGTTGATTGGCC+TGG + contig565end:11529-11548 MsG0080048955.01.T01:CDS 40.0%
! ATAGTACCTTGTTTCCATGC+TGG - contig565end:12784-12803 MsG0080048955.01.T01:intergenic 40.0%
! ATCTCAGCCTTAGACCTTTT+AGG - contig565end:13391-13410 MsG0080048955.01.T01:intergenic 40.0%
! ATTGGTGGGTATTAGGAATC+TGG + contig565end:12222-12241 MsG0080048955.01.T01:intron 40.0%
! CATGTGATTTGTACTGCGAT+TGG - contig565end:13168-13187 MsG0080048955.01.T01:intergenic 40.0%
! GTGGTCCTTTGAGAATGATT+AGG + contig565end:10701-10720 MsG0080048955.01.T01:intron 40.0%
! GTGTCAACTTTTAAGCGACA+GGG - contig565end:13540-13559 MsG0080048955.01.T01:intergenic 40.0%
! GTTGGCCTAATCATTCTCAA+AGG - contig565end:10709-10728 MsG0080048955.01.T01:intergenic 40.0%
! TAAAAGGTCTAAGGCTGAGA+TGG + contig565end:13390-13409 MsG0080048955.01.T01:exon 40.0%
! TGTGTCAACTTTTAAGCGAC+AGG - contig565end:13541-13560 MsG0080048955.01.T01:intergenic 40.0%
! TTTAGGTTTCCTAGCACTAG+AGG + contig565end:10935-10954 MsG0080048955.01.T01:intron 40.0%
! TTTGCTTGAAGCAGCTTTGA+GGG - contig565end:10842-10861 MsG0080048955.01.T01:intergenic 40.0%
! TTTTCCATCAGACTAGCAAC+TGG + contig565end:11329-11348 MsG0080048955.01.T01:intron 40.0%
!! GGTTGTTTTACTGGACCATA+GGG - contig565end:11634-11653 MsG0080048955.01.T01:intergenic 40.0%
!! TCAGTACCTGGTTGTTTTAC+TGG - contig565end:11643-11662 MsG0080048955.01.T01:intergenic 40.0%
!! TCTTCTAAGAGGCACCTTAA+AGG + contig565end:13087-13106 MsG0080048955.01.T01:exon 40.0%
!! TGGTTGTTTTACTGGACCAT+AGG - contig565end:11635-11654 MsG0080048955.01.T01:intergenic 40.0%
AAAACCCTGCCAAGCACATT+AGG - contig565end:12175-12194 MsG0080048954.01.T01:intergenic 45.0%
AAAGCAGGATACTCCTCTTG+TGG - contig565end:13475-13494 MsG0080048954.01.T01:intergenic 45.0%
AATCAAGGGTAGTTGAAGCC+CGG - contig565end:10173-10192 MsG0080048955.01.T01:intergenic 45.0%
ACCTGTCAAGTTCATAGGGA+AGG - contig565end:13063-13082 MsG0080048955.01.T01:intergenic 45.0%
AGAGTTGAAGGAACTCCTCA+CGG - contig565end:13315-13334 MsG0080048955.01.T01:intergenic 45.0%
AGGGTCTCCTAAAAGGTCTA+AGG + contig565end:13381-13400 MsG0080048955.01.T01:exon 45.0%
CAAAGCTGCTTCAAGCAAAG+TGG + contig565end:10843-10862 MsG0080048955.01.T01:intron 45.0%
CAAAGTTGGATGCCCATTTG+AGG + contig565end:10365-10384 MsG0080048955.01.T01:intron 45.0%
CAACTGGCAGTGGAAATTCA+AGG + contig565end:11345-11364 MsG0080048955.01.T01:CDS 45.0%
CAATGGGGAAGATTTGTCAC+TGG - contig565end:10211-10230 MsG0080048955.01.T01:intergenic 45.0%
CAATTCCTAATGTGCTTGGC+AGG + contig565end:12167-12186 MsG0080048955.01.T01:intron 45.0%
CCCTATGAACTTGACAGGTA+TGG + contig565end:13064-13083 MsG0080048955.01.T01:intron 45.0%
CCTGTCAAGTTCATAGGGAA+GGG - contig565end:13062-13081 MsG0080048955.01.T01:intergenic 45.0%
CGATCAGAATAACCTAGACC+AGG - contig565end:11550-11569 MsG0080048955.01.T01:intergenic 45.0%
CGCCGCTAACTCTTTCTATA+TGG - contig565end:11054-11073 MsG0080048955.01.T01:intergenic 45.0%
CGGCCAAATACAATAGGAAG+GGG - contig565end:12756-12775 MsG0080048955.01.T01:intergenic 45.0%
CTCGGCCAAATACAATAGGA+AGG - contig565end:12758-12777 MsG0080048955.01.T01:intergenic 45.0%
CTTTGCTTGAAGCAGCTTTG+AGG - contig565end:10843-10862 MsG0080048955.01.T01:intergenic 45.0%
GAAGCTCTTAACGGAGCTAA+AGG + contig565end:13412-13431 MsG0080048955.01.T01:exon 45.0%
GACAGGTATGGTCTTCTAAG+AGG + contig565end:13076-13095 MsG0080048955.01.T01:intron 45.0%
GACCTCTCCTGTAAATTGTG+GGG + contig565end:12469-12488 MsG0080048955.01.T01:intron 45.0%
GAGATTCCAGCATGGAAACA+AGG + contig565end:12775-12794 MsG0080048955.01.T01:CDS 45.0%
GAGTTAGTCGCAACTCCTTT+AGG - contig565end:11154-11173 MsG0080048955.01.T01:intergenic 45.0%
GATTCACAACCTCTAGTGCT+AGG - contig565end:10947-10966 MsG0080048955.01.T01:intergenic 45.0%
GCAACAGCAGCTATAGCTTT+GGG - contig565end:12717-12736 MsG0080048955.01.T01:intergenic 45.0%
GCTACAGTGATCAATTGGCA+AGG - contig565end:12837-12856 MsG0080048955.01.T01:intergenic 45.0%
GCTGAGATGGAAGCTCTTAA+CGG + contig565end:13403-13422 MsG0080048955.01.T01:exon 45.0%
GGAACATGTGAAGGAGAGTT+CGG + contig565end:11393-11412 MsG0080048955.01.T01:CDS 45.0%
GGTCCCCTTCCTATTGTATT+TGG + contig565end:12750-12769 MsG0080048955.01.T01:CDS 45.0%
GTGCTCACATCAGAAATGGT+TGG - contig565end:11445-11464 MsG0080048955.01.T01:intergenic 45.0%
TATCTGCTTTCGACAATGGC+TGG - contig565end:13217-13236 MsG0080048955.01.T01:intergenic 45.0%
TCGGTGAAAACAGTGGTTCA+CGG - contig565end:12339-12358 MsG0080048955.01.T01:intergenic 45.0%
TGCAACAGCAGCTATAGCTT+TGG - contig565end:12718-12737 MsG0080048955.01.T01:intergenic 45.0%
TGCATGTTTGGACTTGACTG+AGG + contig565end:10765-10784 MsG0080048955.01.T01:intron 45.0%
TGTGTTGTGTTCCGAATCCA+TGG + contig565end:10493-10512 MsG0080048955.01.T01:intron 45.0%
TGTTGTGTCTCCTAGGTCTA+TGG + contig565end:11001-11020 MsG0080048955.01.T01:intron 45.0%
TTGATGCACGAGCATCAACA+TGG - contig565end:10644-10663 MsG0080048955.01.T01:intergenic 45.0%
! AACAGTGGTTCACGGATTAC+TGG - contig565end:12331-12350 MsG0080048955.01.T01:intergenic 45.0%
! AATGTGCTTGGCAGGGTTTT+AGG + contig565end:12175-12194 MsG0080048955.01.T01:intron 45.0%
! ATGTGCTTGGCAGGGTTTTA+GGG + contig565end:12176-12195 MsG0080048955.01.T01:intron 45.0%
! TAGAGAGCATGTTGATGCTC+AGG + contig565end:10549-10568 MsG0080048955.01.T01:intron 45.0%
! TTCTGATGTGAGCACTGTTG+AGG + contig565end:11450-11469 MsG0080048955.01.T01:CDS 45.0%
! TTTCTGGTGTACGGATGAGT+AGG + contig565end:10733-10752 MsG0080048955.01.T01:intron 45.0%
!! ATTGTTGATTGGCCTGGTCT+AGG + contig565end:11535-11554 MsG0080048955.01.T01:CDS 45.0%
!! CAACCAGGTACTGATAGTAG+TGG + contig565end:11649-11668 MsG0080048955.01.T01:intron 45.0%
!! TGGTGTCACGTTATCAGGAT+TGG - contig565end:13197-13216 MsG0080048955.01.T01:intergenic 45.0%
!! TAAATATAAGATTATTTAAT+TGG - contig565end:11183-11202 MsG0080048955.01.T01:intergenic 5.0%
!! TTTAATAAATATTTATTATG+AGG + contig565end:11372-11391 MsG0080048955.01.T01:CDS 5.0%
AACTCCTCACGGGATGTTAC+AGG - contig565end:13304-13323 MsG0080048954.01.T01:intergenic 50.0%
ACTCCTCACGGGATGTTACA+GGG - contig565end:13303-13322 MsG0080048955.01.T01:intergenic 50.0%
ACTGAGGTTTCCCCACTTGT+GGG + contig565end:10781-10800 MsG0080048955.01.T01:intron 50.0%
ACTTGTGGGATTGAGAGACG+CGG + contig565end:10795-10814 MsG0080048955.01.T01:intron 50.0%
AGAGACGCGGCTTTCACTTT+GGG + contig565end:10808-10827 MsG0080048955.01.T01:intron 50.0%
AGTAGTCCGTGCTGCGAAAA+AGG + contig565end:12680-12699 MsG0080048955.01.T01:CDS 50.0%
AGTTGAAGCCCGGATCTTCA+AGG - contig565end:10163-10182 MsG0080048955.01.T01:intergenic 50.0%
ATCAGACTAGCAACTGGCAG+TGG + contig565end:11335-11354 MsG0080048955.01.T01:intron 50.0%
ATTTGGCCGAGATTCCAGCA+TGG + contig565end:12767-12786 MsG0080048955.01.T01:CDS 50.0%
CCCTTCCCTATGAACTTGAC+AGG + contig565end:13059-13078 MsG0080048955.01.T01:intron 50.0%
CCTCCACTACTATCAGTACC+TGG - contig565end:11655-11674 MsG0080048955.01.T01:intergenic 50.0%
CGTCTCTCAATCCCACAAGT+GGG - contig565end:10795-10814 MsG0080048955.01.T01:intergenic 50.0%
GACCCCACAATTTACAGGAG+AGG - contig565end:12474-12493 MsG0080048955.01.T01:intergenic 50.0%
GACTTAGGGTCCGTTTGGAT+TGG - contig565end:12118-12137 MsG0080048955.01.T01:intergenic 50.0%
GAGTTGAAGGAACTCCTCAC+GGG - contig565end:13314-13333 MsG0080048955.01.T01:intergenic 50.0%
GTAGTCCGTGCTGCGAAAAA+GGG + contig565end:12681-12700 MsG0080048955.01.T01:CDS 50.0%
GTCTCTCAATCCCACAAGTG+GGG - contig565end:10794-10813 MsG0080048955.01.T01:intergenic 50.0%
GTTGAAGCCCGGATCTTCAA+GGG - contig565end:10162-10181 MsG0080048955.01.T01:intergenic 50.0%
TGGTGCTCTTCTTCCACAAG+AGG + contig565end:13459-13478 MsG0080048955.01.T01:exon 50.0%
TGGTGTACGGATGAGTAGGA+AGG + contig565end:10737-10756 MsG0080048955.01.T01:intron 50.0%
! ACTGCCAGTTGCTAGTCTGA+TGG - contig565end:11336-11355 MsG0080048955.01.T01:intergenic 50.0%
! ATGTGAGCACTGTTGAGGAG+TGG + contig565end:11455-11474 MsG0080048955.01.T01:CDS 50.0%
! GGAGTATCCTGCTTTAGTCG+CGG + contig565end:13480-13499 MsG0080048955.01.T01:exon 50.0%
!! AGCAAGTTTGTGGAAGTGCC+TGG + contig565end:13439-13458 MsG0080048955.01.T01:exon 50.0%
!! ATGGCTGGTGTCACGTTATC+AGG - contig565end:13202-13221 MsG0080048955.01.T01:intergenic 50.0%
!! CCAGGTACTGATAGTAGTGG+AGG + contig565end:11652-11671 MsG0080048955.01.T01:intron 50.0%
!! GTTGCAGAGAGTGCCATTAG+AGG - contig565end:10054-10073 MsG0080048955.01.T01:intergenic 50.0%
!! TCTTGTGGAAGAAGAGCACC+AGG - contig565end:13460-13479 MsG0080048955.01.T01:intergenic 50.0%
!!! TGGCAGGGTTTTAGGGCTTT+TGG + contig565end:12183-12202 MsG0080048955.01.T01:intron 50.0%
AGACCCTGTAACATCCCGTG+AGG + contig565end:13297-13316 MsG0080048955.01.T01:exon 55.0%
AGCTCTTCCGCGACTAAAGC+AGG - contig565end:13490-13509 MsG0080048955.01.T01:intergenic 55.0%
AGTCCAGTCAAGAAAGCCGC+GGG - contig565end:13274-13293 MsG0080048955.01.T01:intergenic 55.0%
CACGGGATGTTACAGGGTCT+AGG - contig565end:13297-13316 MsG0080048955.01.T01:intergenic 55.0%
GACTGAGGTTTCCCCACTTG+TGG + contig565end:10780-10799 MsG0080048955.01.T01:intron 55.0%
GAGAGACGCGGCTTTCACTT+TGG + contig565end:10807-10826 MsG0080048955.01.T01:intron 55.0%
GAGTCCAGTCAAGAAAGCCG+CGG - contig565end:13275-13294 MsG0080048955.01.T01:intergenic 55.0%
GCGTCTCTCAATCCCACAAG+TGG - contig565end:10796-10815 MsG0080048955.01.T01:intergenic 55.0%
TACACCATCCACCCAACTGC+AGG - contig565end:13115-13134 MsG0080048955.01.T01:intergenic 55.0%
TAGCTGCTGTTGCACCCACT+TGG + contig565end:12724-12743 MsG0080048955.01.T01:CDS 55.0%
TTACCCGCGGCTTTCTTGAC+TGG + contig565end:13268-13287 MsG0080048955.01.T01:exon 55.0%
! AGGAGCACGTTACTTACCCG+CGG + contig565end:13255-13274 MsG0080048955.01.T01:exon 55.0%
!! ACCTTAAAGGCGCCTGCAGT+TGG + contig565end:13100-13119 MsG0080048955.01.T01:exon 55.0%
!! CCAGACCCTTTTTCGCAGCA+CGG - contig565end:12689-12708 MsG0080048955.01.T01:intergenic 55.0%
!! CCTTAAAGGCGCCTGCAGTT+GGG + contig565end:13101-13120 MsG0080048955.01.T01:exon 55.0%
AGGAAGGGGACCAGACCAAG+TGG - contig565end:12742-12761 MsG0080048955.01.T01:intergenic 60.0%
CCCAACTGCAGGCGCCTTTA+AGG - contig565end:13104-13123 MsG0080048955.01.T01:intergenic 60.0%
CCGTGCTGCGAAAAAGGGTC+TGG + contig565end:12686-12705 MsG0080048955.01.T01:CDS 60.0%
GCTGTTGCACCCACTTGGTC+TGG + contig565end:12729-12748 MsG0080048955.01.T01:CDS 60.0%
GGAAGGGGACCAGACCAAGT+GGG - contig565end:12741-12760 MsG0080048955.01.T01:intergenic 60.0%
!! TAAAGGCGCCTGCAGTTGGG+TGG + contig565end:13104-13123 MsG0080048955.01.T01:exon 60.0%
GGCGCCTGCAGTTGGGTGGA+TGG + contig565end:13108-13127 MsG0080048955.01.T01:exon 70.0%
Chromosome Type Strat End Strand Name
contig565end gene 9976 13635 9976 ID=MsG0080048955.01;
contig565end mRNA 9976 13635 9976 ID=MsG0080048955.01.T01;Parent=MsG0080048955.01
contig565end exon 9976 10233 9976 ID=MsG0080048955.01.T01.exon;Parent=MsG0080048955.01.T01
contig565end CDS 10057 10233 10057 ID=MsG0080048955.01.T01.cds;Parent=MsG0080048955.01.T01
contig565end CDS 11340 11655 11340 ID=MsG0080048955.01.T01.cds;Parent=MsG0080048955.01.T01
contig565end exon 11340 11655 11340 ID=MsG0080048955.01.T01.exon;Parent=MsG0080048955.01.T01
contig565end CDS 12637 12796 12637 ID=MsG0080048955.01.T01.cds;Parent=MsG0080048955.01.T01
contig565end exon 12637 12796 12637 ID=MsG0080048955.01.T01.exon;Parent=MsG0080048955.01.T01
contig565end CDS 13081 13549 13081 ID=MsG0080048955.01.T01.cds;Parent=MsG0080048955.01.T01
contig565end exon 13081 13635 13081 ID=MsG0080048955.01.T01.exon;Parent=MsG0080048955.01.T01
Gene Sequence

>MsG0080048955.01.T01

ATGGCACTCTCTGCAACATTTATCACTCCTTCACCTTCAAGTTCTAACCTTTACACCAAATTTCGCAAACCCTTTCTCTCTCACTCTGTTTATCTTCTTAAACCCTTGAAGATCCGGGCTTCAACTACCCTTGATTATTCCAATGTCTCTTCCAGTGACAAATCTTCCCCATTGAAGACTAGCAACTGGCAGTGGAAATTCAAGGACAATTTAATAAATATTTATTATGAGGAACATGTGAAGGAGAGTTCGGAGCCTTCCCAAAATATCTTGATGATGCCAACCATTTCTGATGTGAGCACTGTTGAGGAGTGGAGATTAGTTGCTGAAGACATTGCTCAACGTAATGGCAGTGTCAATTACCGCACTACTATTGTTGATTGGCCTGGTCTAGGTTATTCTGATCGACCAAAGATTGATTACAATGCTGACGTCTTGGAAAAATTTCTGGTTGATTTCATCAATTCACCCTATGGTCCAGTAAAACAACCAGACAACAATTTGGTGATTTTTGGTGGAGGGCATGCTGCTTCAATAGTAGTCCGTGCTGCGAAAAAGGGTCTGGTGAAGCCCAAAGCTATAGCTGCTGTTGCACCCACTTGGTCTGGTCCCCTTCCTATTGTATTTGGCCGAGATTCCAGCATGGAAACAAGGTATGGTCTTCTAAGAGGCACCTTAAAGGCGCCTGCAGTTGGGTGGATGGTGTATAACATGCTTGTGAGCAATGAGAATGCAATCCAATCGCAGTACAAATCACATGTATATGCCAATCCTGATAACGTGACACCAGCCATTGTCGAAAGCAGATATGCATTGACAAAACGACAAGGAGCACGTTACTTACCCGCGGCTTTCTTGACTGGACTCCTAGACCCTGTAACATCCCGTGAGGAGTTCCTTCAACTCTTTGCAGATTTGGAGGGAAAAATACCAGTATTTGTTGTATCAACTAAAGGGTCTCCTAAAAGGTCTAAGGCTGAGATGGAAGCTCTTAACGGAGCTAAAGGAGTGAGCAAGTTTGTGGAAGTGCCTGGTGCTCTTCTTCCACAAGAGGAGTATCCTGCTTTAGTCGCGGAAGAGCTTTATCAATTCTTGCAACAGAATTTTGGCCCTGTCGCTTAA
Protein sequence

>MsG0080048955.01.T01

MALSATFITPSPSSSNLYTKFRKPFLSHSVYLLKPLKIRASTTLDYSNVSSSDKSSPLKTSNWQWKFKDNLINIYYEEHVKESSEPSQNILMMPTISDVSTVEEWRLVAEDIAQRNGSVNYRTTIVDWPGLGYSDRPKIDYNADVLEKFLVDFINSPYGPVKQPDNNLVIFGGGHAASIVVRAAKKGLVKPKAIAAVAPTWSGPLPIVFGRDSSMETRYGLLRGTLKAPAVGWMVYNMLVSNENAIQSQYKSHVYANPDNVTPAIVESRYALTKRQGARYLPAAFLTGLLDPVTSREEFLQLFADLEGKIPVFVVSTKGSPKRSKAEMEALNGAKGVSKFVEVPGALLPQEEYPALVAEELYQFLQQNFGPVA*