Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048957.01.T01 | XP_003604043.1 | 98.077 | 156 | 3 | 0 | 1 | 156 | 1 | 156 | 3.78E-112 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048957.01.T01 | Q9SZN7 | 75.641 | 156 | 35 | 1 | 1 | 156 | 1 | 153 | 1.06E-83 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048957.01.T01 | G7J8I5 | 98.077 | 156 | 3 | 0 | 1 | 156 | 1 | 156 | 1.81e-112 | 325 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048957.01 | MsG0280006411.01 | 0.808052 | 3.742110e-50 | 2.117991e-47 |
| MsG0080048957.01 | MsG0380017226.01 | 0.815726 | 7.977287e-52 | 5.543829e-49 |
| MsG0080048957.01 | MsG0380018052.01 | 0.885062 | 1.123735e-71 | 7.600774e-68 |
| MsG0080048957.01 | MsG0480020843.01 | 0.820603 | 6.286347e-53 | 4.996448e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048957.01.T01 | MTR_3g117890 | 98.077 | 156 | 3 | 0 | 1 | 156 | 1 | 156 | 4.58e-116 | 325 |
| MsG0080048957.01.T01 | MTR_4g073040 | 79.874 | 159 | 26 | 3 | 1 | 156 | 1 | 156 | 1.16e-88 | 255 |
| MsG0080048957.01.T01 | MTR_5g022620 | 62.112 | 161 | 52 | 3 | 1 | 156 | 1 | 157 | 4.83e-66 | 198 |
| MsG0080048957.01.T01 | MTR_1g030630 | 53.846 | 156 | 63 | 3 | 1 | 156 | 1 | 147 | 8.12e-54 | 167 |
| MsG0080048957.01.T01 | MTR_8g091420 | 52.258 | 155 | 68 | 3 | 2 | 156 | 5 | 153 | 2.46e-49 | 156 |
| MsG0080048957.01.T01 | MTR_3g087770 | 52.564 | 156 | 65 | 4 | 2 | 156 | 5 | 152 | 3.61e-49 | 155 |
| MsG0080048957.01.T01 | MTR_5g025150 | 48.077 | 156 | 70 | 3 | 1 | 156 | 1 | 145 | 9.61e-46 | 146 |
| MsG0080048957.01.T01 | MTR_6g003990 | 45.679 | 162 | 75 | 3 | 1 | 156 | 1 | 155 | 3.76e-45 | 145 |
| MsG0080048957.01.T01 | MTR_7g083060 | 48.718 | 156 | 70 | 3 | 1 | 156 | 1 | 146 | 4.42e-45 | 145 |
| MsG0080048957.01.T01 | MTR_3g073670 | 48.387 | 155 | 70 | 3 | 2 | 156 | 5 | 149 | 1.41e-42 | 139 |
| MsG0080048957.01.T01 | MTR_6g003990 | 47.154 | 123 | 60 | 1 | 34 | 156 | 1 | 118 | 1.79e-36 | 122 |
| MsG0080048957.01.T01 | MTR_5g055020 | 38.462 | 156 | 87 | 3 | 1 | 156 | 1 | 147 | 6.89e-35 | 119 |
| MsG0080048957.01.T01 | MTR_1g078090 | 38.686 | 137 | 76 | 4 | 25 | 156 | 52 | 185 | 1.99e-24 | 93.6 |
| MsG0080048957.01.T01 | MTR_6g026890 | 36.765 | 136 | 80 | 4 | 25 | 156 | 15 | 148 | 2.43e-23 | 89.7 |
| MsG0080048957.01.T01 | MTR_2g091235 | 37.143 | 140 | 76 | 3 | 28 | 156 | 4 | 142 | 2.63e-22 | 87.0 |
| MsG0080048957.01.T01 | MTR_6g045203 | 37.063 | 143 | 69 | 6 | 28 | 156 | 5 | 140 | 2.68e-18 | 76.6 |
| MsG0080048957.01.T01 | MTR_3g435930 | 35.338 | 133 | 73 | 3 | 26 | 156 | 116 | 237 | 2.46e-14 | 68.2 |
| MsG0080048957.01.T01 | MTR_7g013660 | 48.485 | 66 | 33 | 1 | 26 | 91 | 4 | 68 | 3.64e-14 | 65.5 |
| MsG0080048957.01.T01 | MTR_1g083310 | 36.765 | 68 | 43 | 0 | 25 | 92 | 14 | 81 | 2.82e-12 | 63.5 |
| MsG0080048957.01.T01 | MTR_1g092670 | 45.455 | 66 | 35 | 1 | 26 | 91 | 4 | 68 | 4.67e-12 | 58.5 |
| MsG0080048957.01.T01 | MTR_7g108560 | 36.765 | 68 | 42 | 1 | 24 | 91 | 20 | 86 | 6.92e-12 | 62.0 |
| MsG0080048957.01.T01 | MTR_7g113110 | 42.857 | 63 | 35 | 1 | 30 | 92 | 37 | 98 | 1.07e-11 | 62.0 |
| MsG0080048957.01.T01 | MTR_3g010130 | 55.769 | 52 | 21 | 2 | 1 | 52 | 1 | 50 | 2.45e-11 | 56.6 |
| MsG0080048957.01.T01 | MTR_1g107565 | 39.706 | 68 | 40 | 1 | 24 | 91 | 11 | 77 | 3.87e-11 | 60.1 |
| MsG0080048957.01.T01 | MTR_3g067750 | 41.538 | 65 | 37 | 1 | 26 | 90 | 12 | 75 | 5.32e-11 | 58.9 |
| MsG0080048957.01.T01 | MTR_7g100450 | 46.269 | 67 | 34 | 1 | 26 | 92 | 209 | 273 | 8.13e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048957.01.T01 | AT4G38580 | 75.641 | 156 | 35 | 1 | 1 | 156 | 1 | 153 | 1.09e-84 | 245 |
| MsG0080048957.01.T01 | AT4G38580 | 75.641 | 156 | 35 | 1 | 1 | 156 | 1 | 153 | 1.09e-84 | 245 |
| MsG0080048957.01.T01 | AT4G35060 | 70.064 | 157 | 42 | 3 | 1 | 156 | 1 | 153 | 2.68e-76 | 224 |
| MsG0080048957.01.T01 | AT5G66110 | 67.391 | 138 | 43 | 1 | 19 | 156 | 12 | 147 | 1.17e-66 | 199 |
| MsG0080048957.01.T01 | AT5G66110 | 67.391 | 138 | 43 | 1 | 19 | 156 | 12 | 147 | 1.17e-66 | 199 |
| MsG0080048957.01.T01 | AT5G66110 | 66.667 | 123 | 39 | 1 | 34 | 156 | 1 | 121 | 7.76e-59 | 179 |
| MsG0080048957.01.T01 | AT1G71050 | 55.696 | 158 | 62 | 4 | 1 | 156 | 1 | 152 | 1.35e-53 | 167 |
| MsG0080048957.01.T01 | AT1G22990 | 48.428 | 159 | 72 | 2 | 1 | 156 | 1 | 152 | 3.07e-50 | 158 |
| MsG0080048957.01.T01 | AT1G22990 | 46.154 | 156 | 75 | 2 | 1 | 156 | 1 | 147 | 3.75e-47 | 150 |
| MsG0080048957.01.T01 | AT4G39700 | 49.367 | 158 | 73 | 4 | 2 | 156 | 5 | 158 | 7.36e-45 | 145 |
| MsG0080048957.01.T01 | AT5G17450 | 46.497 | 157 | 75 | 3 | 1 | 156 | 1 | 149 | 7.68e-43 | 139 |
| MsG0080048957.01.T01 | AT4G08570 | 44.872 | 156 | 75 | 4 | 2 | 156 | 5 | 150 | 1.71e-40 | 133 |
| MsG0080048957.01.T01 | AT5G17450 | 44.340 | 106 | 50 | 3 | 52 | 156 | 8 | 105 | 8.67e-26 | 94.7 |
| MsG0080048957.01.T01 | AT1G06330 | 38.667 | 150 | 70 | 6 | 27 | 156 | 3 | 150 | 2.79e-24 | 92.4 |
| MsG0080048957.01.T01 | AT2G18196 | 33.824 | 136 | 84 | 4 | 25 | 156 | 45 | 178 | 2.82e-20 | 82.8 |
| MsG0080048957.01.T01 | AT4G10465 | 33.566 | 143 | 89 | 3 | 18 | 156 | 43 | 183 | 1.18e-19 | 81.3 |
| MsG0080048957.01.T01 | AT3G56891 | 33.136 | 169 | 88 | 6 | 10 | 156 | 1 | 166 | 9.01e-19 | 78.6 |
| MsG0080048957.01.T01 | AT2G18196 | 33.071 | 127 | 79 | 4 | 34 | 156 | 1 | 125 | 1.63e-16 | 71.6 |
| MsG0080048957.01.T01 | AT3G56891 | 33.793 | 145 | 72 | 5 | 34 | 156 | 1 | 143 | 2.03e-16 | 71.6 |
| MsG0080048957.01.T01 | AT1G29100 | 34.615 | 156 | 64 | 4 | 27 | 156 | 4 | 147 | 7.34e-16 | 70.5 |
| MsG0080048957.01.T01 | AT1G29100 | 33.987 | 153 | 63 | 4 | 30 | 156 | 1 | 141 | 1.73e-14 | 66.6 |
| MsG0080048957.01.T01 | AT1G56210 | 39.744 | 78 | 46 | 1 | 25 | 102 | 39 | 115 | 9.61e-13 | 64.7 |
| MsG0080048957.01.T01 | AT1G66240 | 43.939 | 66 | 36 | 1 | 26 | 91 | 33 | 97 | 1.23e-12 | 60.8 |
| MsG0080048957.01.T01 | AT3G56240 | 47.761 | 67 | 34 | 1 | 26 | 92 | 3 | 68 | 2.12e-12 | 60.8 |
| MsG0080048957.01.T01 | AT3G56240 | 47.761 | 67 | 34 | 1 | 26 | 92 | 3 | 68 | 2.12e-12 | 60.8 |
| MsG0080048957.01.T01 | AT3G02960 | 29.323 | 133 | 84 | 2 | 24 | 156 | 124 | 246 | 2.73e-12 | 62.8 |
| MsG0080048957.01.T01 | AT5G27690 | 39.130 | 69 | 41 | 1 | 24 | 92 | 28 | 95 | 1.92e-11 | 61.2 |
| MsG0080048957.01.T01 | AT3G06130 | 39.706 | 68 | 40 | 1 | 24 | 91 | 8 | 74 | 4.44e-11 | 60.1 |
Find 59 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTAAAGAAAGAGATAATA+TGG | 0.220139 | contig567end:-21424 | MsG0080048957.01.T01:exon |
| CAAACACCGCAAACAATTTC+AGG | 0.262177 | contig567end:-21349 | MsG0080048957.01.T01:intron |
| TAAGTAAGTATTATGCCTTT+TGG | 0.283772 | contig567end:-20764 | MsG0080048957.01.T01:three_prime_UTR |
| AGCACACAAGGTCACTGTTC+AGG | 0.319616 | contig567end:-21148 | MsG0080048957.01.T01:CDS |
| GAAATTGTGAACCAATAAAA+AGG | 0.330838 | contig567end:+20690 | MsG0080048957.01.T01:intergenic |
| TCGTACGTACCTTGTGCATA+TGG | 0.340646 | contig567end:+21027 | MsG0080048957.01.T01:intergenic |
| TACGACAACAATCAGTATTC+TGG | 0.342642 | contig567end:-20970 | MsG0080048957.01.T01:CDS |
| ATACGCGCCACCACTTTGTT+AGG | 0.355486 | contig567end:+21114 | MsG0080048957.01.T01:intergenic |
| TCGCTCACCGCACTGGTAAG+AGG | 0.420324 | contig567end:-21092 | MsG0080048957.01.T01:CDS |
| CTTTCCTATCAATATCAACT+TGG | 0.425944 | contig567end:+21169 | MsG0080048957.01.T01:intergenic |
| GTAGTTGTTTCTAACATAAC+CGG | 0.435319 | contig567end:+20990 | MsG0080048957.01.T01:intergenic |
| AAGAGATAATATGGGTGCTC+TGG | 0.436844 | contig567end:-21415 | MsG0080048957.01.T01:exon |
| GGGTGTGCAACGACGTCGTA+TGG | 0.444075 | contig567end:+21048 | MsG0080048957.01.T01:intergenic |
| TCTTCGGAAAATCAATGATA+AGG | 0.455251 | contig567end:+20597 | MsG0080048957.01.T01:intergenic |
| CTATTACCTGAAATTGTTTG+CGG | 0.461292 | contig567end:+21343 | MsG0080048957.01.T01:intergenic |
| GAAATTGTTTGCGGTGTTTG+TGG | 0.465422 | contig567end:+21352 | MsG0080048957.01.T01:intergenic |
| CAATGATAAGGCGATTGTAA+TGG | 0.466760 | contig567end:+20609 | MsG0080048957.01.T01:intergenic |
| ATGATATCACATGATAGAAC+AGG | 0.470255 | contig567end:+20876 | MsG0080048957.01.T01:intergenic |
| ACGACGTCGTATGGAACATA+TGG | 0.471597 | contig567end:+21057 | MsG0080048957.01.T01:intergenic |
| TCAGTATTCTGGATCCCATC+TGG | 0.473879 | contig567end:-20959 | MsG0080048957.01.T01:CDS |
| TGAACCAAGTTGATATTGAT+AGG | 0.475748 | contig567end:-21173 | MsG0080048957.01.T01:CDS |
| AAATTGTTTGCGGTGTTTGT+GGG | 0.476948 | contig567end:+21353 | MsG0080048957.01.T01:intergenic |
| GCACACAAGGTCACTGTTCA+GGG | 0.478112 | contig567end:-21147 | MsG0080048957.01.T01:CDS |
| CTGGTAAGAGGGCTGAGATA+TGG | 0.502117 | contig567end:-21080 | MsG0080048957.01.T01:CDS |
| AACATAGACAAATTCCCAAA+AGG | 0.505201 | contig567end:+20749 | MsG0080048957.01.T01:intergenic |
| CGTACGTACCTTGTGCATAT+GGG | 0.507821 | contig567end:+21028 | MsG0080048957.01.T01:intergenic |
| TTATTCATTATTATTAGTTG+TGG | 0.510635 | contig567end:-20845 | MsG0080048957.01.T01:three_prime_UTR |
| GTGTTTGTGGGAACTTCCAC+CGG | 0.512215 | contig567end:+21365 | MsG0080048957.01.T01:intergenic |
| AGTAAAGAAAGAGATAATAT+GGG | 0.512889 | contig567end:-21423 | MsG0080048957.01.T01:exon |
| TGGAACTAGCACGCGCCAGA+TGG | 0.513296 | contig567end:+20944 | MsG0080048957.01.T01:intergenic |
| GCGCGTATCGCTCACCGCAC+TGG | 0.514553 | contig567end:-21099 | MsG0080048957.01.T01:CDS |
| AGAACAAAACAAAATGAAGT+TGG | 0.515900 | contig567end:+20816 | MsG0080048957.01.T01:intergenic |
| CGCTCACCGCACTGGTAAGA+GGG | 0.517783 | contig567end:-21091 | MsG0080048957.01.T01:CDS |
| TCTGAGCTATTTGACTGCTC+CGG | 0.534149 | contig567end:-21384 | MsG0080048957.01.T01:CDS |
| TCATTTCATATAATGATCTG+TGG | 0.538961 | contig567end:-20669 | MsG0080048957.01.T01:three_prime_UTR |
| AAAGTGAGAAGGTCGGTGGA+AGG | 0.544215 | contig567end:-21207 | MsG0080048957.01.T01:CDS |
| GGTGGAAGTGAAAGTGAAGA+TGG | 0.547212 | contig567end:-21250 | MsG0080048957.01.T01:CDS |
| GAGCTATTTGACTGCTCCGG+TGG | 0.554467 | contig567end:-21381 | MsG0080048957.01.T01:CDS |
| CATTTCATATAATGATCTGT+GGG | 0.556929 | contig567end:-20668 | MsG0080048957.01.T01:three_prime_UTR |
| GGAACTAGCACGCGCCAGAT+GGG | 0.557432 | contig567end:+20945 | MsG0080048957.01.T01:intergenic |
| AGGTCGGTGGAAGGAATGAA+AGG | 0.586836 | contig567end:-21198 | MsG0080048957.01.T01:CDS |
| GAGAAAAGTGAGAAGGTCGG+TGG | 0.602080 | contig567end:-21211 | MsG0080048957.01.T01:CDS |
| AGCGGTGGTGTAGCGAACTT+CGG | 0.605621 | contig567end:+20921 | MsG0080048957.01.T01:intergenic |
| TCACATGATAGAACAGGCGG+TGG | 0.611063 | contig567end:+20882 | MsG0080048957.01.T01:intergenic |
| TACGACAAGAAAGCACCCTC+CGG | 0.616294 | contig567end:-21009 | MsG0080048957.01.T01:CDS |
| CGAGAGAAAAGTGAGAAGGT+CGG | 0.626298 | contig567end:-21214 | MsG0080048957.01.T01:CDS |
| GTTGTTTCTAACATAACCGG+AGG | 0.637424 | contig567end:+20993 | MsG0080048957.01.T01:intergenic |
| TATTGATAGGAAAGCACACA+AGG | 0.639331 | contig567end:-21160 | MsG0080048957.01.T01:CDS |
| GATGCGAGAGAAAAGTGAGA+AGG | 0.650873 | contig567end:-21218 | MsG0080048957.01.T01:CDS |
| TGTTGAACCTAACAAAGTGG+TGG | 0.684270 | contig567end:-21121 | MsG0080048957.01.T01:CDS |
| CACATGATAGAACAGGCGGT+GGG | 0.684342 | contig567end:+20883 | MsG0080048957.01.T01:intergenic |
| CACACAAGGTCACTGTTCAG+GGG | 0.691299 | contig567end:-21146 | MsG0080048957.01.T01:CDS |
| GGTGGTGTAGCGAACTTCGG+TGG | 0.699721 | contig567end:+20924 | MsG0080048957.01.T01:intergenic |
| TTGTTTCTAACATAACCGGA+GGG | 0.699769 | contig567end:+20994 | MsG0080048957.01.T01:intergenic |
| ATATCACATGATAGAACAGG+CGG | 0.711703 | contig567end:+20879 | MsG0080048957.01.T01:intergenic |
| GTTGCACACCCATATGCACA+AGG | 0.727359 | contig567end:-21036 | MsG0080048957.01.T01:CDS |
| GTATGTTGAACCTAACAAAG+TGG | 0.728726 | contig567end:-21124 | MsG0080048957.01.T01:CDS |
| TCTCAGCCCTCTTACCAGTG+CGG | 0.734386 | contig567end:+21085 | MsG0080048957.01.T01:intergenic |
| AAAGTGAAGATGGACTGCGA+AGG | 0.769260 | contig567end:-21240 | MsG0080048957.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAACATATGAATATGAA+TGG | + | contig567end:20713-20732 | MsG0080048957.01.T01:intergenic | 15.0% |
| !! | TATTAAAATATATGTACAGA+CGG | - | contig567end:20752-20771 | MsG0080048957.01.T01:three_prime_UTR | 15.0% |
| !! | TTATTCATTATTATTAGTTG+TGG | - | contig567end:21178-21197 | MsG0080048957.01.T01:CDS | 15.0% |
| !! | AAGTAAAGAAAGAGATAATA+TGG | - | contig567end:20599-20618 | MsG0080048957.01.T01:three_prime_UTR | 20.0% |
| !! | AGTAAAGAAAGAGATAATAT+GGG | - | contig567end:20600-20619 | MsG0080048957.01.T01:three_prime_UTR | 20.0% |
| ! | ACATATGAATATGAATGGAA+TGG | + | contig567end:20708-20727 | MsG0080048957.01.T01:intergenic | 25.0% |
| ! | AGAACAAAACAAAATGAAGT+TGG | + | contig567end:21210-21229 | MsG0080048957.01.T01:intergenic | 25.0% |
| ! | CATTTCATATAATGATCTGT+GGG | - | contig567end:21355-21374 | MsG0080048957.01.T01:CDS | 25.0% |
| ! | GAAATTGTGAACCAATAAAA+AGG | + | contig567end:21336-21355 | MsG0080048957.01.T01:intergenic | 25.0% |
| ! | TCATTTCATATAATGATCTG+TGG | - | contig567end:21354-21373 | MsG0080048957.01.T01:CDS | 25.0% |
| !! | AAGTAAGTATTATGCCTTTT+GGG | - | contig567end:21260-21279 | MsG0080048957.01.T01:intron | 25.0% |
| !! | TAAGTAAGTATTATGCCTTT+TGG | - | contig567end:21259-21278 | MsG0080048957.01.T01:intron | 25.0% |
| !!! | TCATTTTGTTTTGTTCTGTA+TGG | - | contig567end:21213-21232 | MsG0080048957.01.T01:CDS | 25.0% |
| AACATAGACAAATTCCCAAA+AGG | + | contig567end:21277-21296 | MsG0080048957.01.T01:intergenic | 30.0% | |
| ATGATATCACATGATAGAAC+AGG | + | contig567end:21150-21169 | MsG0080048957.01.T01:intergenic | 30.0% | |
| CTATTACCTGAAATTGTTTG+CGG | + | contig567end:20683-20702 | MsG0080048957.01.T01:intergenic | 30.0% | |
| CTTTCCTATCAATATCAACT+TGG | + | contig567end:20857-20876 | MsG0080048957.01.T01:intergenic | 30.0% | |
| TAAAATATATGTACAGACGG+TGG | - | contig567end:20755-20774 | MsG0080048957.01.T01:three_prime_UTR | 30.0% | |
| ! | GTAGGTTACTACCTTTTTAT+TGG | - | contig567end:21322-21341 | MsG0080048957.01.T01:intron | 30.0% |
| !! | GTAGTTGTTTCTAACATAAC+CGG | + | contig567end:21036-21055 | MsG0080048957.01.T01:intergenic | 30.0% |
| !! | TGAACCAAGTTGATATTGAT+AGG | - | contig567end:20850-20869 | MsG0080048957.01.T01:three_prime_UTR | 30.0% |
| AAATTGTTTGCGGTGTTTGT+GGG | + | contig567end:20673-20692 | MsG0080048957.01.T01:intergenic | 35.0% | |
| ATATCACATGATAGAACAGG+CGG | + | contig567end:21147-21166 | MsG0080048957.01.T01:intergenic | 35.0% | |
| CAATGATAAGGCGATTGTAA+TGG | + | contig567end:21417-21436 | MsG0080048957.01.T01:intergenic | 35.0% | |
| GTATGTTGAACCTAACAAAG+TGG | - | contig567end:20899-20918 | MsG0080048957.01.T01:CDS | 35.0% | |
| TACGACAACAATCAGTATTC+TGG | - | contig567end:21053-21072 | MsG0080048957.01.T01:CDS | 35.0% | |
| TTCGTAGTAGTAGTAGTAGT+AGG | - | contig567end:21304-21323 | MsG0080048957.01.T01:intron | 35.0% | |
| ! | TATTGATAGGAAAGCACACA+AGG | - | contig567end:20863-20882 | MsG0080048957.01.T01:exon | 35.0% |
| !! | TGTTTTGTTCTGTATGGAGA+TGG | - | contig567end:21219-21238 | MsG0080048957.01.T01:CDS | 35.0% |
| !! | TTGTTTCTAACATAACCGGA+GGG | + | contig567end:21032-21051 | MsG0080048957.01.T01:intergenic | 35.0% |
| AAGAGATAATATGGGTGCTC+TGG | - | contig567end:20608-20627 | MsG0080048957.01.T01:three_prime_UTR | 40.0% | |
| CAAACACCGCAAACAATTTC+AGG | - | contig567end:20674-20693 | MsG0080048957.01.T01:three_prime_UTR | 40.0% | |
| GAAATTGTTTGCGGTGTTTG+TGG | + | contig567end:20674-20693 | MsG0080048957.01.T01:intergenic | 40.0% | |
| TGTTGAACCTAACAAAGTGG+TGG | - | contig567end:20902-20921 | MsG0080048957.01.T01:CDS | 40.0% | |
| !! | GTTGTTTCTAACATAACCGG+AGG | + | contig567end:21033-21052 | MsG0080048957.01.T01:intergenic | 40.0% |
| ACGACGTCGTATGGAACATA+TGG | + | contig567end:20969-20988 | MsG0080048957.01.T01:intergenic | 45.0% | |
| CGAGAGAAAAGTGAGAAGGT+CGG | - | contig567end:20809-20828 | MsG0080048957.01.T01:three_prime_UTR | 45.0% | |
| CGTACGTACCTTGTGCATAT+GGG | + | contig567end:20998-21017 | MsG0080048957.01.T01:intergenic | 45.0% | |
| GATGCGAGAGAAAAGTGAGA+AGG | - | contig567end:20805-20824 | MsG0080048957.01.T01:three_prime_UTR | 45.0% | |
| GGTGGAAGTGAAAGTGAAGA+TGG | - | contig567end:20773-20792 | MsG0080048957.01.T01:three_prime_UTR | 45.0% | |
| TCAGTATTCTGGATCCCATC+TGG | - | contig567end:21064-21083 | MsG0080048957.01.T01:CDS | 45.0% | |
| TCGTACGTACCTTGTGCATA+TGG | + | contig567end:20999-21018 | MsG0080048957.01.T01:intergenic | 45.0% | |
| TCTGAGCTATTTGACTGCTC+CGG | - | contig567end:20639-20658 | MsG0080048957.01.T01:three_prime_UTR | 45.0% | |
| !! | AAAGTGAAGATGGACTGCGA+AGG | - | contig567end:20783-20802 | MsG0080048957.01.T01:three_prime_UTR | 45.0% |
| AAAGTGAGAAGGTCGGTGGA+AGG | - | contig567end:20816-20835 | MsG0080048957.01.T01:three_prime_UTR | 50.0% | |
| AGCACACAAGGTCACTGTTC+AGG | - | contig567end:20875-20894 | MsG0080048957.01.T01:exon | 50.0% | |
| AGGTCGGTGGAAGGAATGAA+AGG | - | contig567end:20825-20844 | MsG0080048957.01.T01:three_prime_UTR | 50.0% | |
| ATACGCGCCACCACTTTGTT+AGG | + | contig567end:20912-20931 | MsG0080048957.01.T01:intergenic | 50.0% | |
| CACACAAGGTCACTGTTCAG+GGG | - | contig567end:20877-20896 | MsG0080048957.01.T01:exon | 50.0% | |
| CACATGATAGAACAGGCGGT+GGG | + | contig567end:21143-21162 | MsG0080048957.01.T01:intergenic | 50.0% | |
| CTGGTAAGAGGGCTGAGATA+TGG | - | contig567end:20943-20962 | MsG0080048957.01.T01:CDS | 50.0% | |
| GAGAAAAGTGAGAAGGTCGG+TGG | - | contig567end:20812-20831 | MsG0080048957.01.T01:three_prime_UTR | 50.0% | |
| GCACACAAGGTCACTGTTCA+GGG | - | contig567end:20876-20895 | MsG0080048957.01.T01:exon | 50.0% | |
| GTGTTTGTGGGAACTTCCAC+CGG | + | contig567end:20661-20680 | MsG0080048957.01.T01:intergenic | 50.0% | |
| GTTGCACACCCATATGCACA+AGG | - | contig567end:20987-21006 | MsG0080048957.01.T01:CDS | 50.0% | |
| TCACATGATAGAACAGGCGG+TGG | + | contig567end:21144-21163 | MsG0080048957.01.T01:intergenic | 50.0% | |
| ! | ATTTTCGTCGCTGAAAGCGG+TGG | + | contig567end:21120-21139 | MsG0080048957.01.T01:intergenic | 50.0% |
| ! | GGGATTTTCGTCGCTGAAAG+CGG | + | contig567end:21123-21142 | MsG0080048957.01.T01:intergenic | 50.0% |
| !! | TACGACAAGAAAGCACCCTC+CGG | - | contig567end:21014-21033 | MsG0080048957.01.T01:CDS | 50.0% |
| AGCGGTGGTGTAGCGAACTT+CGG | + | contig567end:21105-21124 | MsG0080048957.01.T01:intergenic | 55.0% | |
| GAGCTATTTGACTGCTCCGG+TGG | - | contig567end:20642-20661 | MsG0080048957.01.T01:three_prime_UTR | 55.0% | |
| TCTCAGCCCTCTTACCAGTG+CGG | + | contig567end:20941-20960 | MsG0080048957.01.T01:intergenic | 55.0% | |
| GGAACTAGCACGCGCCAGAT+GGG | + | contig567end:21081-21100 | MsG0080048957.01.T01:intergenic | 60.0% | |
| GGGTGTGCAACGACGTCGTA+TGG | + | contig567end:20978-20997 | MsG0080048957.01.T01:intergenic | 60.0% | |
| GGTGGTGTAGCGAACTTCGG+TGG | + | contig567end:21102-21121 | MsG0080048957.01.T01:intergenic | 60.0% | |
| TGGAACTAGCACGCGCCAGA+TGG | + | contig567end:21082-21101 | MsG0080048957.01.T01:intergenic | 60.0% | |
| ! | CGCTCACCGCACTGGTAAGA+GGG | - | contig567end:20932-20951 | MsG0080048957.01.T01:CDS | 60.0% |
| ! | TCGCTCACCGCACTGGTAAG+AGG | - | contig567end:20931-20950 | MsG0080048957.01.T01:CDS | 60.0% |
| GCGCGTATCGCTCACCGCAC+TGG | - | contig567end:20924-20943 | MsG0080048957.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig567end | gene | 20599 | 21446 | 20599 | ID=MsG0080048957.01;Name=MsG0080048957.01 |
| contig567end | mRNA | 20599 | 21446 | 20599 | ID=MsG0080048957.01.T01;Parent=MsG0080048957.01;Name=MsG0080048957.01.T01;_AED=0.19;_eAED=0.19;_QI=19|1|1|1|1|1|2|283|156 |
| contig567end | exon | 20599 | 21274 | 20599 | ID=MsG0080048957.01.T01:exon:13824;Parent=MsG0080048957.01.T01 |
| contig567end | exon | 21350 | 21446 | 21350 | ID=MsG0080048957.01.T01:exon:13823;Parent=MsG0080048957.01.T01 |
| contig567end | five_prime_UTR | 21428 | 21446 | 21428 | ID=MsG0080048957.01.T01:five_prime_utr;Parent=MsG0080048957.01.T01 |
| contig567end | CDS | 21350 | 21427 | 21350 | ID=MsG0080048957.01.T01:cds;Parent=MsG0080048957.01.T01 |
| contig567end | CDS | 20882 | 21274 | 20882 | ID=MsG0080048957.01.T01:cds;Parent=MsG0080048957.01.T01 |
| contig567end | three_prime_UTR | 20599 | 20881 | 20599 | ID=MsG0080048957.01.T01:three_prime_utr;Parent=MsG0080048957.01.T01 |
| Gene Sequence |
| Protein sequence |
