AlfalfaGEDB | MsG0180000026.01

M. sativa cultivar ZhongmuNo.1 / MsG0180000026.01

KEGG: -
GO: GO:0004519
PFAM: PF03161

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000026.01.T01	KEH16011.1	95.025	201	10	0	1	201	374	574	2.99E-138	408

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000026.01.T01	Q9XIL5	53.333	195	88	2	7	200	644	836	6.81E-67	222

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000026.01.T01	A0A072TFL6	95.025	201	10	0	1	201	374	574	1.43e-138	408

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048065.01	MsG0180000026.01	0.816093	6.606415e-52	4.637249e-49
MsG0080048660.01	MsG0180000026.01	0.816623	5.027576e-52	3.580470e-49
MsG0080048683.01	MsG0180000026.01	0.808527	2.964436e-50	1.698962e-47
MsG0080048727.01	MsG0180000026.01	0.823146	1.620359e-53	1.383826e-50
MsG0080048748.01	MsG0180000026.01	0.824312	8.643289e-54	7.627532e-51
MsG0080048773.01	MsG0180000026.01	0.805292	1.432510e-49	7.550202e-47
MsG0080048802.01	MsG0180000026.01	0.847442	1.153809e-59	2.051088e-56
MsG0080048826.01	MsG0180000026.01	0.831902	1.283054e-55	1.411793e-52
MsG0080048849.01	MsG0180000026.01	0.868119	8.273043e-66	2.958726e-62
MsG0080048865.01	MsG0180000026.01	0.808434	3.103382e-50	1.774306e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000026.01.T01	MTR_0381s0010	95.025	201	10	0	1	201	374	574	3.62e-142	408
MsG0180000026.01.T01	MTR_1g026035	95.025	201	10	0	1	201	588	788	2.06e-139	408

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000026.01.T01	AT2G15820	53.333	195	88	2	7	200	644	836	6.94e-68	222

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Find 45 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCACCTATGAACAAGTTT+TGG	0.306684	1:+473183	None:intergenic
AAGATTAAGGGAAGTCGTGA+GGG	0.613821	1:-473090	MsG0180000026.01.T01:CDS
AAGGGAAAGGTATTCTGGAT+TGG	0.541846	1:-473009	MsG0180000026.01.T01:CDS
AATTGCCATCAAAATTGAAA+TGG	0.413559	1:+473382	None:intergenic
ACCATTGCAAGCTCTCATTT+TGG	0.235787	1:-473249	MsG0180000026.01.T01:CDS
ACCATTTGGCCAAAACTGAT+CGG	0.544895	1:+473218	None:intergenic
AGATGTAAGAGATTTCACTA+AGG	0.650087	1:-472929	MsG0180000026.01.T01:CDS
AGGGAAAGGGAAAGGTATTC+TGG	0.343457	1:-473014	MsG0180000026.01.T01:CDS
AGGGCATCGAAATTCATCGG+GGG	0.752383	1:-473124	MsG0180000026.01.T01:CDS
AGGTGTGAATATAATGAGAC+AGG	0.525973	1:-472905	MsG0180000026.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATGTAAGAGATTTCACTA+AGG	-	Chr1:473364-473383	MsG0180000026.01.T01:CDS	30.0%
AGGTGTGAATATAATGAGAC+AGG	-	Chr1:473388-473407	MsG0180000026.01.T01:CDS	35.0%
GACTTTACAATCAATGGACA+TGG	+	Chr1:473258-473277	None:intergenic	35.0%
GATTGTAAAGTCAAGGGAAA+GGG	-	Chr1:473266-473285	MsG0180000026.01.T01:CDS	35.0%
TCCCTTGACTTTACAATCAA+TGG	+	Chr1:473264-473283	None:intergenic	35.0%
TGATTGTAAAGTCAAGGGAA+AGG	-	Chr1:473265-473284	MsG0180000026.01.T01:CDS	35.0%
AAGATTAAGGGAAGTCGTGA+GGG	-	Chr1:473203-473222	MsG0180000026.01.T01:CDS	40.0%
ACCATTTGGCCAAAACTGAT+CGG	+	Chr1:473078-473097	None:intergenic	40.0%
CATACTGGTACATGTATGGA+GGG	-	Chr1:473150-473169	MsG0180000026.01.T01:CDS	40.0%
CTTGCATACTGGTACATGTA+TGG	-	Chr1:473146-473165	MsG0180000026.01.T01:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	472855	473460	472855	ID=MsG0180000026.01;Name=MsG0180000026.01
Chr1	mRNA	472855	473460	472855	ID=MsG0180000026.01.T01;Parent=MsG0180000026.01;Name=MsG0180000026.01.T01;_AED=0.41;_eAED=0.41;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|201
Chr1	exon	472855	473460	472855	ID=MsG0180000026.01.T01:exon:7829;Parent=MsG0180000026.01.T01
Chr1	CDS	472855	473460	472855	ID=MsG0180000026.01.T01:cds;Parent=MsG0180000026.01.T01

Gene Sequence

>MsG0180000026.01.T01

ATGCTTCTAGCTGGTTTGCAAATTGATTCTGATGACAAAAATAAGAACCATATTATCCATTTCAATTTTGATGGCAATTCTGTGAGTCATTACGTCTTGAAGAGTCATATACATCGCCAGTTTTATGAGTGGCTACATCCTACTTCTAAGCCAAGTGGTGACAGTGAGAACATACCAGATAAGTTTTGCACCATTGCAAGCTCTCATTTTGGCTTTTATGCCGATCAGTTTTGGCCAAATGGTCAACCTACAGTTCCAAAACTTGTTCATAGGTGGTTGTCACCTTGTGTTCTTGCATACTGGTACATGTATGGAGGGCATCGAAATTCATCGGGGGATGTTTTGCTGAAGATTAAGGGAAGTCGTGAGGGTGTGGAGAACATTGTCAAAAAGTTCAAAGCCATGTCCATTGATTGTAAAGTCAAGGGAAAGGGAAAGGTATTCTGGATTGGTATTCTGGGAAGCAATACAACTTGGTTCTGGAAATTGGTTGAGCCATATATTCTTGAAGATGTAAGAGATTTCACTAAGGCAGGTGTGAATATAATGAGACAGGATTTAACAGAAACTCAAGATATTAACTTCTGTAGTGAATCAGACGAATGA

Protein sequence

>MsG0180000026.01.T01

MLLAGLQIDSDDKNKNHIIHFNFDGNSVSHYVLKSHIHRQFYEWLHPTSKPSGDSENIPDKFCTIASSHFGFYADQFWPNGQPTVPKLVHRWLSPCVLAYWYMYGGHRNSSGDVLLKIKGSREGVENIVKKFKAMSIDCKVKGKGKVFWIGILGSNTTWFWKLVEPYILEDVRDFTKAGVNIMRQDLTETQDINFCSESDE*