AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048773.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048773.01.T01 MTR_2g436530 88.827 1083 35 7 1 1017 87 1149 0.0 1915
MsG0080048773.01.T01 MTR_1g090320 24.749 796 516 21 287 1014 705 1485 1.05e-53 205
MsG0080048773.01.T01 MTR_1g090320 24.749 796 516 21 287 1014 707 1487 1.09e-53 205
MsG0080048773.01.T01 MTR_8g103227 22.822 815 508 20 287 1014 552 1332 1.79e-53 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048773.01.T01 AT3G06880 49.157 830 335 8 257 1017 453 1264 0.0 775
MsG0080048773.01.T01 AT3G06880 51.261 119 42 4 1 117 102 206 4.94e-24 110
MsG0080048773.01.T01 AT3G06880 48.786 824 335 8 257 1011 453 1258 0.0 760
MsG0080048773.01.T01 AT3G06880 51.261 119 42 4 1 117 102 206 4.49e-24 110
MsG0080048773.01.T01 AT3G06880 47.005 868 335 9 257 1017 453 1302 0.0 756
MsG0080048773.01.T01 AT3G06880 51.261 119 42 4 1 117 102 206 4.77e-24 110
MsG0080048773.01.T01 AT3G06880 47.776 787 324 8 257 974 453 1221 0.0 703
MsG0080048773.01.T01 AT3G06880 51.261 119 42 4 1 117 102 206 5.16e-24 110
MsG0080048773.01.T01 AT3G06880 47.837 786 323 8 257 973 453 1220 0.0 702
MsG0080048773.01.T01 AT3G06880 51.261 119 42 4 1 117 102 206 4.63e-24 110

Find 23 sgRNAs with CRISPR-Local

Find 414 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATCAGGTCATGCTTTA+TGG 0.194808 contig434end:-17090 MsG0080048773.01.T01:exon
CAACAAACCAAGTAATGATT+TGG 0.324417 contig434end:+17363 None:intergenic
TCATCTTCATCAAGCATTGC+TGG 0.354572 contig434end:+17402 None:intergenic
TGGTTTCTCCGAAGCTTGTT+TGG 0.374157 contig434end:-17260 MsG0080048773.01.T01:exon
GAAGCATGAAAATAGAAGTT+TGG 0.375640 contig434end:-17199 MsG0080048773.01.T01:exon
AGGTTAAAAGATCTTTGTTC+CGG 0.382867 contig434end:+17453 None:intergenic
GGAGTGTTTGGTGTATTATC+AGG 0.408403 contig434end:-17103 MsG0080048773.01.T01:exon
TTCAATTCCAAATCATTACT+TGG 0.421927 contig434end:-17370 MsG0080048773.01.T01:exon
AATTCATTCCAAACAAGCTT+CGG 0.453656 contig434end:+17252 None:intergenic
AATCAATGAAGCAATTGTTA+AGG 0.454034 contig434end:-17145 MsG0080048773.01.T01:exon
AAGGAGGTACAAGGAGTGTT+TGG 0.460275 contig434end:-17115 MsG0080048773.01.T01:exon
TGCAATACAATCAAAACATC+CGG 0.481812 contig434end:-17472 MsG0080048773.01.T01:exon
TCAGTTGTTAGGAAGCTTCA+AGG 0.508700 contig434end:-17324 MsG0080048773.01.T01:exon
TGCTTTATGGAGAGATTCCA+TGG 0.525779 contig434end:-17077 MsG0080048773.01.T01:exon
GGAAGCTTCAAGGTGATGAA+TGG 0.531953 contig434end:-17314 MsG0080048773.01.T01:exon
AAAAGACTTTCACAAAGTTG+AGG 0.535670 contig434end:+17225 None:intergenic
TGAAGCAATTGTTAAGGAGA+AGG 0.556575 contig434end:-17139 MsG0080048773.01.T01:exon
GGAGAAGGCAAGGAGGTACA+AGG 0.559331 contig434end:-17124 MsG0080048773.01.T01:exon
TGTTAGTTCTTTGAATTCTG+AGG 0.586035 contig434end:-17172 MsG0080048773.01.T01:exon
CAATTGTTAAGGAGAAGGCA+AGG 0.616510 contig434end:-17134 MsG0080048773.01.T01:exon
CTGCAATAACTGCTCCACCA+TGG 0.624772 contig434end:+17060 None:intergenic
TTGTTAAGGAGAAGGCAAGG+AGG 0.739913 contig434end:-17131 MsG0080048773.01.T01:exon
TTTATGGAGAGATTCCATGG+TGG 0.847791 contig434end:-17074 MsG0080048773.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGAAAAGATAATATTAT+TGG - contig434end:10885-10904 MsG0080048773.01.T01:intron 10.0%
!! TAATATATTCAAATAAATGT+CGG - contig434end:13676-13695 MsG0080048773.01.T01:CDS 10.0%
!! TTAAAATATTATACTTGAAT+AGG - contig434end:13037-13056 MsG0080048773.01.T01:CDS 10.0%
!!! AAAAAATGTTATTTTTCTTT+TGG - contig434end:17342-17361 MsG0080048773.01.T01:exon 10.0%
!!! AAGTATAATATTTTAATGAA+AGG + contig434end:13033-13052 None:intergenic 10.0%
!!! AGTATAATATTTTAATGAAA+GGG + contig434end:13032-13051 None:intergenic 10.0%
!!! GAAAAATAACATTTTTTTTA+TGG + contig434end:17339-17358 None:intergenic 10.0%
!!! GTTTTTTAAAAATTTACATT+TGG - contig434end:12981-13000 MsG0080048773.01.T01:CDS 10.0%
!!! TACTCAAATTTTTAATAAAT+TGG + contig434end:12693-12712 None:intergenic 10.0%
!! AATATATTCAAATAAATGTC+GGG - contig434end:13677-13696 MsG0080048773.01.T01:intron 15.0%
!! CAATTATATTATGTAAACTT+AGG + contig434end:15147-15166 None:intergenic 15.0%
!!! TCAGAAAAATTTAAGTTTAT+AGG - contig434end:12531-12550 MsG0080048773.01.T01:intron 15.0%
!!! TTTTGGTTAATTTTTTCATA+GGG + contig434end:16602-16621 None:intergenic 15.0%
!! AAAATGTTAGTTATTATGCA+AGG - contig434end:10558-10577 MsG0080048773.01.T01:exon 20.0%
!! AAATAAAATTCATAACATGC+AGG - contig434end:13843-13862 MsG0080048773.01.T01:intron 20.0%
!! AACTAATTATGGTTCATTAA+AGG - contig434end:11577-11596 MsG0080048773.01.T01:intron 20.0%
!! ATATATTCAAATAAATGTCG+GGG - contig434end:13678-13697 MsG0080048773.01.T01:intron 20.0%
!! ATTTGCAAAATCATAATTCA+TGG + contig434end:17441-17460 None:intergenic 20.0%
!! GAATAAGTATCAGAAAATAT+TGG + contig434end:13467-13486 None:intergenic 20.0%
!! TAAGGTTAAAACTTTCTTTA+TGG - contig434end:15405-15424 MsG0080048773.01.T01:CDS 20.0%
!! TATTATCTTAGAATTTGAGT+TGG - contig434end:15724-15743 MsG0080048773.01.T01:CDS 20.0%
!! TTATTTCATGTCATAAATCA+AGG + contig434end:15646-15665 None:intergenic 20.0%
!! TTCTAACAACAATAATTTCA+AGG - contig434end:11675-11694 MsG0080048773.01.T01:intron 20.0%
!! TTTGCAAAATCATAATTCAT+GGG + contig434end:17440-17459 None:intergenic 20.0%
!!! AAATGTTAGACATTAGTTTT+AGG + contig434end:16828-16847 None:intergenic 20.0%
!!! AATGTTAGACATTAGTTTTA+GGG + contig434end:16827-16846 None:intergenic 20.0%
!!! ACAAAACTATTGTTTTGAAA+AGG - contig434end:15250-15269 MsG0080048773.01.T01:intron 20.0%
!!! ACTTATTCATATAAAGTATC+TGG - contig434end:13479-13498 MsG0080048773.01.T01:intron 20.0%
!!! ATGACATGATACTTTATTTT+AGG - contig434end:16154-16173 MsG0080048773.01.T01:CDS 20.0%
!!! ATTATCTTAGAATTTGAGTT+GGG - contig434end:15725-15744 MsG0080048773.01.T01:CDS 20.0%
!!! GAAATAAGAGATATTTTCAA+AGG - contig434end:16006-16025 MsG0080048773.01.T01:CDS 20.0%
!!! GATTTTGCAAATTTTGAATA+AGG - contig434end:17449-17468 MsG0080048773.01.T01:exon 20.0%
!!! GTTTTGGTTAATTTTTTCAT+AGG + contig434end:16603-16622 None:intergenic 20.0%
!!! TCTTTCATTTGTATTTTGTT+TGG - contig434end:12264-12283 MsG0080048773.01.T01:intron 20.0%
!!! TGAAATAATAAAACCTGTTT+TGG - contig434end:15057-15076 MsG0080048773.01.T01:CDS 20.0%
!!! TGTTATTTTTCTTTTGGAAA+AGG - contig434end:17348-17367 MsG0080048773.01.T01:exon 20.0%
! AATAGTTTGAGGAATAAAGT+AGG - contig434end:10520-10539 MsG0080048773.01.T01:exon 25.0%
! AATCAATGAAGCAATTGTTA+AGG - contig434end:10345-10364 MsG0080048773.01.T01:exon 25.0%
! AATTCATGGGAATAACATAT+TGG + contig434end:17427-17446 None:intergenic 25.0%
! ACATCAACATTTCAAATTGA+AGG + contig434end:17234-17253 None:intergenic 25.0%
! ACCACAAAAAATAATGTCAT+TGG + contig434end:16743-16762 None:intergenic 25.0%
! ACTGAGAAGTAAGATTAAAA+GGG - contig434end:13415-13434 MsG0080048773.01.T01:CDS 25.0%
! ACTGCCACAAAAATATTTAA+GGG + contig434end:11190-11209 None:intergenic 25.0%
! ATAGAAGATGTGAAGAAAAA+AGG - contig434end:11710-11729 MsG0080048773.01.T01:intron 25.0%
! ATAGTTTGAGGAATAAAGTA+GGG - contig434end:10521-10540 MsG0080048773.01.T01:exon 25.0%
! ATATTCAGATGGATCAATTA+AGG - contig434end:14885-14904 MsG0080048773.01.T01:intron 25.0%
! ATATTTAAGGGAAACAAAAG+TGG + contig434end:11178-11197 None:intergenic 25.0%
! ATCACTTGGTTTATTATGAA+AGG - contig434end:10742-10761 MsG0080048773.01.T01:CDS 25.0%
! ATGTGAAGAAAAAAGGTTTA+AGG - contig434end:11717-11736 MsG0080048773.01.T01:intron 25.0%
! CAAAATACAAATGAAAGAAC+TGG + contig434end:12262-12281 None:intergenic 25.0%
! CAAAATAGAAAAATGTTGCT+GGG - contig434end:14991-15010 MsG0080048773.01.T01:intron 25.0%
! CAAACATCATTAGAAAAATG+TGG - contig434end:11497-11516 MsG0080048773.01.T01:CDS 25.0%
! CATACAATCTCTACTAATAT+TGG + contig434end:11848-11867 None:intergenic 25.0%
! CCTCATAAAAAAAAATGACA+AGG + contig434end:14177-14196 None:intergenic 25.0%
! CTGAGAAGTAAGATTAAAAA+AGG - contig434end:13416-13435 MsG0080048773.01.T01:CDS 25.0%
! GAAAGGTTAATTAGCTAAAT+AGG - contig434end:10759-10778 MsG0080048773.01.T01:CDS 25.0%
! GAATGTAATTGAGTAGAATT+TGG - contig434end:12286-12305 MsG0080048773.01.T01:intron 25.0%
! GATCATGGAAAGTTATATAT+TGG - contig434end:16054-16073 MsG0080048773.01.T01:CDS 25.0%
! GCATATGAATTAAATGCATT+TGG + contig434end:17031-17050 None:intergenic 25.0%
! GGGACATAAATAATAGTATT+AGG + contig434end:16534-16553 None:intergenic 25.0%
! GTATTTATATCTATAGGAGA+TGG + contig434end:11812-11831 None:intergenic 25.0%
! GTCTTGGATAATAAAAACAT+GGG - contig434end:15921-15940 MsG0080048773.01.T01:CDS 25.0%
! TACAATAACATGCACATAAT+AGG - contig434end:15481-15500 MsG0080048773.01.T01:CDS 25.0%
! TACTGAAAAACAAGGAATAA+AGG - contig434end:15604-15623 MsG0080048773.01.T01:CDS 25.0%
! TACTGCCACAAAAATATTTA+AGG + contig434end:11191-11210 None:intergenic 25.0%
! TCCAGTGTATTTATATCTAT+AGG + contig434end:11818-11837 None:intergenic 25.0%
! TCCTATAGATATAAATACAC+TGG - contig434end:11814-11833 MsG0080048773.01.T01:intron 25.0%
! TGTCTTGGATAATAAAAACA+TGG - contig434end:15920-15939 MsG0080048773.01.T01:CDS 25.0%
! TTAGGGAAATAAATAACAAG+AGG + contig434end:16810-16829 None:intergenic 25.0%
! TTATTGCAAACAAACATGAA+TGG - contig434end:10795-10814 MsG0080048773.01.T01:CDS 25.0%
! TTCAATTCCAAATCATTACT+TGG - contig434end:10120-10139 MsG0080048773.01.T01:exon 25.0%
! TTTGATATTGCTGTCTAATA+TGG - contig434end:12770-12789 MsG0080048773.01.T01:intron 25.0%
! TTTGTTAAGTAACATAACTG+AGG + contig434end:14210-14229 None:intergenic 25.0%
!! ATATTTTCAAAGGTAAGCAT+GGG - contig434end:16016-16035 MsG0080048773.01.T01:CDS 25.0%
!! ATTTTTATCTCTCAGTTGTT+AGG - contig434end:10155-10174 MsG0080048773.01.T01:exon 25.0%
!! CTAATCTTTGTTGTAATACT+AGG + contig434end:16952-16971 None:intergenic 25.0%
!! TAGATGTATCTTAGAAGTAT+TGG + contig434end:13538-13557 None:intergenic 25.0%
!! TCAGTAAGGATTGAAATTTT+GGG + contig434end:16416-16435 None:intergenic 25.0%
!! TGAACAAACTTTTATCAGTT+GGG + contig434end:13105-13124 None:intergenic 25.0%
!! TTCATTAAAGGATGTGATTT+TGG - contig434end:11589-11608 MsG0080048773.01.T01:intron 25.0%
!! TTTTATTATCCAAGACATGA+AGG + contig434end:15917-15936 None:intergenic 25.0%
!!! AAAACAACTGTGTTTTTAGT+TGG + contig434end:13574-13593 None:intergenic 25.0%
!!! AAATATTTTTGTGGCAGTAT+GGG - contig434end:11192-11211 MsG0080048773.01.T01:CDS 25.0%
!!! AATACTTCTAAGATACATCT+AGG - contig434end:13537-13556 MsG0080048773.01.T01:intron 25.0%
!!! AATTTTTAAAAAACGGTTCG+AGG + contig434end:12975-12994 None:intergenic 25.0%
!!! CCTTGTCATTTTTTTTTATG+AGG - contig434end:14174-14193 MsG0080048773.01.T01:CDS 25.0%
!!! CTTCTTTTTTTTTTTATCCG+CGG + contig434end:16568-16587 None:intergenic 25.0%
!!! GTTTCCCTTAAATATTTTTG+TGG - contig434end:11183-11202 MsG0080048773.01.T01:intron 25.0%
!!! TAAATATTTTTGTGGCAGTA+TGG - contig434end:11191-11210 MsG0080048773.01.T01:CDS 25.0%
!!! TAATAAAACCTGTTTTGGTA+CGG - contig434end:15062-15081 MsG0080048773.01.T01:CDS 25.0%
!!! TACATGGATGGATTATATAT+AGG - contig434end:16370-16389 MsG0080048773.01.T01:intron 25.0%
!!! TTGCTTTATCGATTTCAAAA+CGG - contig434end:11321-11340 MsG0080048773.01.T01:intron 25.0%
!!! TTTTGAAGTTCAATAGTTTG+AGG - contig434end:10509-10528 MsG0080048773.01.T01:exon 25.0%
AAAAGACTTTCACAAAGTTG+AGG + contig434end:10268-10287 None:intergenic 30.0%
AAGTCACTAAATGATACGTT+TGG - contig434end:12715-12734 MsG0080048773.01.T01:intron 30.0%
AATTCATTCCAAACAAGCTT+CGG + contig434end:10241-10260 None:intergenic 30.0%
AATTGAAGTTCTTCTTACAG+AGG + contig434end:16876-16895 None:intergenic 30.0%
ACATCTTCAATATGTCTTAC+TGG - contig434end:13605-13624 MsG0080048773.01.T01:CDS 30.0%
ACCTTCAAGGCAATTTAATA+GGG + contig434end:15761-15780 None:intergenic 30.0%
ACTCTTGCTAATAGAAATCT+TGG + contig434end:15444-15463 None:intergenic 30.0%
ACTTTCAAACATAACTTGGA+TGG - contig434end:14504-14523 MsG0080048773.01.T01:intron 30.0%
AGGATACAAGTATAGATGTA+TGG - contig434end:13863-13882 MsG0080048773.01.T01:intron 30.0%
AGGTTAAAAGATCTTTGTTC+CGG + contig434end:10040-10059 None:intergenic 30.0%
AGTATAACACAACACACAAT+AGG - contig434end:16177-16196 MsG0080048773.01.T01:CDS 30.0%
AGTTCATCAGGAACTAATTA+TGG - contig434end:11566-11585 MsG0080048773.01.T01:intron 30.0%
ATCAGAAAATATTGGACACA+TGG + contig434end:13459-13478 None:intergenic 30.0%
ATGTGTCTAACTGAATCAAT+AGG + contig434end:12495-12514 None:intergenic 30.0%
ATTAAATTGCCTTGAAGGTA+AGG - contig434end:15762-15781 MsG0080048773.01.T01:CDS 30.0%
ATTGAAGTTCTTCTTACAGA+GGG + contig434end:16875-16894 None:intergenic 30.0%
ATTTCAATCCTTACTGACAA+AGG - contig434end:16419-16438 MsG0080048773.01.T01:intron 30.0%
CAACAAACCAAGTAATGATT+TGG + contig434end:10130-10149 None:intergenic 30.0%
CAAGACATTCAAGATTTCTT+TGG + contig434end:15520-15539 None:intergenic 30.0%
CAAGATTCGATCATAGAATT+TGG + contig434end:15171-15190 None:intergenic 30.0%
CATATATGTCTTTAGCTAGT+AGG - contig434end:12311-12330 MsG0080048773.01.T01:intron 30.0%
CTACTAGCTAAAGACATATA+TGG + contig434end:12313-12332 None:intergenic 30.0%
CTTAACAAATGTCATGACAA+TGG - contig434end:14221-14240 MsG0080048773.01.T01:CDS 30.0%
GAAGCATGAAAATAGAAGTT+TGG - contig434end:10291-10310 MsG0080048773.01.T01:exon 30.0%
GACAAGTAATAAGTGATGTA+AGG + contig434end:17075-17094 None:intergenic 30.0%
GACTGAGAAGTAAGATTAAA+AGG - contig434end:13414-13433 MsG0080048773.01.T01:CDS 30.0%
GATACAGATACAATATGACA+TGG + contig434end:13764-13783 None:intergenic 30.0%
GCAAAAACTAATGCAATTCT+CGG - contig434end:14456-14475 MsG0080048773.01.T01:intron 30.0%
GCAAAATAGAAAAATGTTGC+TGG - contig434end:14990-15009 MsG0080048773.01.T01:intron 30.0%
GCATTTAATTCATATGCCAA+AGG - contig434end:17034-17053 MsG0080048773.01.T01:intron 30.0%
GTAGTTAACAGAATGCAAAT+GGG + contig434end:12607-12626 None:intergenic 30.0%
GTATAACACAACACACAATA+GGG - contig434end:16178-16197 MsG0080048773.01.T01:CDS 30.0%
TAAGTAACATAACTGAGGTA+AGG + contig434end:14205-14224 None:intergenic 30.0%
TACCTTCAAGGCAATTTAAT+AGG + contig434end:15762-15781 None:intergenic 30.0%
TATTATCAGGTCATGCTTTA+TGG - contig434end:10400-10419 MsG0080048773.01.T01:exon 30.0%
TCCAAATGTATCATAAGTGT+TGG - contig434end:13898-13917 MsG0080048773.01.T01:intron 30.0%
TCCAACACTTATGATACATT+TGG + contig434end:13902-13921 None:intergenic 30.0%
TCTTGAAGTAATAGTCATGA+AGG - contig434end:15535-15554 MsG0080048773.01.T01:CDS 30.0%
TGACATGTGTTTAAACACTA+TGG + contig434end:15113-15132 None:intergenic 30.0%
TGATTGAATGTAGCACATAT+CGG - contig434end:17162-17181 MsG0080048773.01.T01:exon 30.0%
TGCAATACAATCAAAACATC+CGG - contig434end:10018-10037 MsG0080048773.01.T01:exon 30.0%
TGCTACAAATAACATGCATT+TGG - contig434end:11979-11998 MsG0080048773.01.T01:CDS 30.0%
TGTAGTTAACAGAATGCAAA+TGG + contig434end:12608-12627 None:intergenic 30.0%
TTATCATGAAGAAAGTCCTA+GGG - contig434end:12564-12583 MsG0080048773.01.T01:intron 30.0%
TTATTCAGTGGATATTCAGA+TGG - contig434end:14874-14893 MsG0080048773.01.T01:intron 30.0%
TTCGCAATTACTGAAAAACA+AGG - contig434end:15596-15615 MsG0080048773.01.T01:CDS 30.0%
TTTCCATTTGTTCAGATCAT+CGG - contig434end:12360-12379 MsG0080048773.01.T01:intron 30.0%
! AACTTTGCTTTGTTCTTACA+TGG - contig434end:16354-16373 MsG0080048773.01.T01:intron 30.0%
! ATTGATTCAGTTAGACACAT+TGG - contig434end:12495-12514 MsG0080048773.01.T01:intron 30.0%
! CTGAACAAACTTTTATCAGT+TGG + contig434end:13106-13125 None:intergenic 30.0%
! GAACATTTTCTGTCTCTAAA+AGG + contig434end:12171-12190 None:intergenic 30.0%
! GATATTTTCAAAGGTAAGCA+TGG - contig434end:16015-16034 MsG0080048773.01.T01:CDS 30.0%
! GCATCTGAGATTATATTAAG+AGG - contig434end:14058-14077 MsG0080048773.01.T01:intron 30.0%
! GCATTTCTTCTGACTTTTTA+AGG + contig434end:10060-10079 None:intergenic 30.0%
! GTCAGTAAGGATTGAAATTT+TGG + contig434end:16417-16436 None:intergenic 30.0%
! TAAAGCAACAACATCTTTTG+TGG + contig434end:11309-11328 None:intergenic 30.0%
! TATCTGTTTTCTTTTGAACC+AGG - contig434end:15215-15234 MsG0080048773.01.T01:intron 30.0%
! TCATTTTCTTCAAGCTGTTT+TGG - contig434end:10210-10229 MsG0080048773.01.T01:exon 30.0%
! TGTAACGATTTTCTGTTTTG+CGG - contig434end:12883-12902 MsG0080048773.01.T01:intron 30.0%
! TGTTAGTTCTTTGAATTCTG+AGG - contig434end:10318-10337 MsG0080048773.01.T01:exon 30.0%
! TTGGTAATAATTTGAGCAAG+TGG - contig434end:17136-17155 MsG0080048773.01.T01:exon 30.0%
! TTTTGTTAGAACAGATATCC+TGG + contig434end:15236-15255 None:intergenic 30.0%
!! AAGTTTTAACCTTACCCTTA+TGG + contig434end:15399-15418 None:intergenic 30.0%
!! GAGGTTAATAATTTGCTAAG+AGG - contig434end:12629-12648 MsG0080048773.01.T01:intron 30.0%
!! GGATGGATTATATATAGGAA+TGG - contig434end:16375-16394 MsG0080048773.01.T01:intron 30.0%
!! GTGTTGTTTGACATACATTA+TGG - contig434end:16113-16132 MsG0080048773.01.T01:CDS 30.0%
!! GTTACAGAAGTTTTTAGATG+CGG + contig434end:12869-12888 None:intergenic 30.0%
!!! AACTGTGTTTTTAGTTGGTA+AGG + contig434end:13569-13588 None:intergenic 30.0%
!!! ACTATTGTTTTGAAAAGGTC+TGG - contig434end:15255-15274 MsG0080048773.01.T01:intron 30.0%
!!! ATTTTTTGTGGTACTGAGAA+GGG - contig434end:16751-16770 MsG0080048773.01.T01:intron 30.0%
!!! CGTATCATGTTTTGATGATA+GGG + contig434end:13289-13308 None:intergenic 30.0%
!!! CTATTGTTTTGAAAAGGTCT+GGG - contig434end:15256-15275 MsG0080048773.01.T01:intron 30.0%
!!! GCCAATGACATTATTTTTTG+TGG - contig434end:16739-16758 MsG0080048773.01.T01:intron 30.0%
!!! GTTTTTCAAGTGTTACAAGT+TGG + contig434end:14596-14615 None:intergenic 30.0%
!!! TATTTTTTGTGGTACTGAGA+AGG - contig434end:16750-16769 MsG0080048773.01.T01:intron 30.0%
!!! TCGTATCATGTTTTGATGAT+AGG + contig434end:13290-13309 None:intergenic 30.0%
!!! TTTTGCTGACTTAGAGAAAA+TGG + contig434end:14976-14995 None:intergenic 30.0%
AAACTAATGCAATTCTCGGA+AGG - contig434end:14460-14479 MsG0080048773.01.T01:intron 35.0%
AATGACTAAGCTTTCCATAC+TGG + contig434end:16975-16994 None:intergenic 35.0%
ACAATGACATTCATCAAAGG+AGG - contig434end:12654-12673 MsG0080048773.01.T01:intron 35.0%
ACATGAAGGTAGCAAAACTA+TGG + contig434end:15903-15922 None:intergenic 35.0%
ACATGATACGAAACTTCAAC+TGG - contig434end:13299-13318 MsG0080048773.01.T01:intron 35.0%
ACATTTCCCAAATTGTCAAC+AGG - contig434end:16842-16861 MsG0080048773.01.T01:intron 35.0%
ACCAAATTCTCAAACAGATC+TGG - contig434end:16650-16669 MsG0080048773.01.T01:intron 35.0%
ACCAGATCTGTTTGAGAATT+TGG + contig434end:16654-16673 None:intergenic 35.0%
ACCAGCAAGATTTGATAGAA+TGG + contig434end:13200-13219 None:intergenic 35.0%
ACCCTATTAAATTGCCTTGA+AGG - contig434end:15757-15776 MsG0080048773.01.T01:CDS 35.0%
ACTATAGAGCCAATCTCTAT+AGG + contig434end:16270-16289 None:intergenic 35.0%
ACTCAACAAATTCAGCTCTT+AGG - contig434end:14261-14280 MsG0080048773.01.T01:CDS 35.0%
AGTCCTCTCTCTAAACTATA+AGG + contig434end:13398-13417 None:intergenic 35.0%
ATAGGTTAGCAGCTAAAATC+TGG + contig434end:12477-12496 None:intergenic 35.0%
CAATTGTAGCCTATAGAGAT+TGG - contig434end:16258-16277 MsG0080048773.01.T01:CDS 35.0%
CACAGAAACTGACATTAGTT+AGG + contig434end:15021-15040 None:intergenic 35.0%
CACAGAGACATAAAAAACCT+TGG - contig434end:12817-12836 MsG0080048773.01.T01:intron 35.0%
CATCAAAGGAGGATATCTTA+TGG - contig434end:12665-12684 MsG0080048773.01.T01:intron 35.0%
CATTATCTCCTTTGTCAGTA+AGG + contig434end:16430-16449 None:intergenic 35.0%
CATTTCCCAAATTGTCAACA+GGG - contig434end:16843-16862 MsG0080048773.01.T01:intron 35.0%
CGATTAATAAATCCTCGACA+CGG + contig434end:11376-11395 None:intergenic 35.0%
CTAACTAATGTCAGTTTCTG+TGG - contig434end:15019-15038 MsG0080048773.01.T01:CDS 35.0%
CTAAGAGTGACTTACTGATA+TGG - contig434end:10984-11003 MsG0080048773.01.T01:intron 35.0%
CTCTATAGGCTACAATTGAA+TGG + contig434end:16256-16275 None:intergenic 35.0%
CTGATAAAACCATAAGGGTA+AGG - contig434end:15387-15406 MsG0080048773.01.T01:CDS 35.0%
CTTATCATGAAGAAAGTCCT+AGG - contig434end:12563-12582 MsG0080048773.01.T01:intron 35.0%
GAATTGTGATCATAACACGT+AGG + contig434end:13719-13738 None:intergenic 35.0%
GACGACTTTCAAACATAACT+TGG - contig434end:14500-14519 MsG0080048773.01.T01:intron 35.0%
GAGAGTTTAATCAGTTCATC+AGG - contig434end:11554-11573 MsG0080048773.01.T01:intron 35.0%
GAGCTCGCAAATTTCAATTA+AGG + contig434end:10721-10740 None:intergenic 35.0%
GCAACAATGACATTCATCAA+AGG - contig434end:12651-12670 MsG0080048773.01.T01:intron 35.0%
GCATGTATAATTATGCCTCA+GGG - contig434end:14140-14159 MsG0080048773.01.T01:intron 35.0%
GGTTACATAGTTACATACCT+TGG + contig434end:12241-12260 None:intergenic 35.0%
GTCCACTGATAAAACCATAA+GGG - contig434end:15382-15401 MsG0080048773.01.T01:CDS 35.0%
TAAAGTTGCAATATGCCTCA+AGG + contig434end:14685-14704 None:intergenic 35.0%
TAACATGCACATAATAGGTG+TGG - contig434end:15486-15505 MsG0080048773.01.T01:CDS 35.0%
TACTGACAAAGGAGATAATG+TGG - contig434end:16430-16449 MsG0080048773.01.T01:CDS 35.0%
TAGGCTACAATTGAATGGAT+AGG + contig434end:16251-16270 None:intergenic 35.0%
TATAATTATGCCTCAGGGAA+AGG - contig434end:14145-14164 MsG0080048773.01.T01:intron 35.0%
TATCCGCGGACTTATATTTA+GGG + contig434end:16554-16573 None:intergenic 35.0%
TCAAAGAGATGGAATTCTAG+TGG + contig434end:11413-11432 None:intergenic 35.0%
TCATCTTAGAACTTTCTTCG+CGG + contig434end:11472-11491 None:intergenic 35.0%
TCCATTCTATCAAATCTTGC+TGG - contig434end:13196-13215 MsG0080048773.01.T01:intron 35.0%
TCTGAAAATGTGGTTAGAAG+TGG + contig434end:15796-15815 None:intergenic 35.0%
TCTTACCACCATGATGATTA+AGG + contig434end:14763-14782 None:intergenic 35.0%
TGAAGCAATTGTTAAGGAGA+AGG - contig434end:10351-10370 MsG0080048773.01.T01:exon 35.0%
TGAATAAGGTGCAAATCGTT+TGG - contig434end:17463-17482 MsG0080048773.01.T01:exon 35.0%
TGCATGTATAATTATGCCTC+AGG - contig434end:14139-14158 MsG0080048773.01.T01:intron 35.0%
TGTTCATACACAAATCCTTG+AGG - contig434end:14798-14817 MsG0080048773.01.T01:intron 35.0%
TGTTGAAGGAACAACATTCA+AGG - contig434end:16301-16320 MsG0080048773.01.T01:intron 35.0%
TTACATACCTTGGTATGCAT+AGG + contig434end:12231-12250 None:intergenic 35.0%
TTATCCGCGGACTTATATTT+AGG + contig434end:16555-16574 None:intergenic 35.0%
TTGCTTTCCTACATGACAAA+TGG + contig434end:14440-14459 None:intergenic 35.0%
TTGTGACACATTCATCATAG+TGG - contig434end:13650-13669 MsG0080048773.01.T01:CDS 35.0%
! ACAACAAAGATTAGCCAGTA+TGG - contig434end:16958-16977 MsG0080048773.01.T01:intron 35.0%
! CTGCATGCATTTTATGAGAA+TGG + contig434end:12089-12108 None:intergenic 35.0%
! GGAATTGGATGAAAGACTTT+TGG - contig434end:14108-14127 MsG0080048773.01.T01:intron 35.0%
! GTCTCTAAAAGGTGTAGAAA+TGG + contig434end:12160-12179 None:intergenic 35.0%
! TCTTTGTTGTAATACTAGGC+TGG + contig434end:16948-16967 None:intergenic 35.0%
! TGAAAAGGTCTGGGATATTA+GGG - contig434end:15265-15284 MsG0080048773.01.T01:intron 35.0%
! TTGAAAAGGTCTGGGATATT+AGG - contig434end:15264-15283 MsG0080048773.01.T01:intron 35.0%
! TTGCTTTGTTCTTACATGGA+TGG - contig434end:16358-16377 MsG0080048773.01.T01:intron 35.0%
! TTGTTGTTGTCTTAATCCTC+TGG - contig434end:10587-10606 MsG0080048773.01.T01:exon 35.0%
!! AGAGGAGTACCAAAAAAGTT+GGG - contig434end:16676-16695 MsG0080048773.01.T01:intron 35.0%
!! ATTTGGTTTGTGTCTGACAA+TGG + contig434end:17014-17033 None:intergenic 35.0%
!! CACTAGACAGTCTTTTAAGT+GGG - contig434end:15360-15379 MsG0080048773.01.T01:CDS 35.0%
!! CAGTTGATTTTGCGTTGTTT+TGG + contig434end:16619-16638 None:intergenic 35.0%
!! TAGTCTTGTATGGGACATTA+AGG - contig434end:15298-15317 MsG0080048773.01.T01:CDS 35.0%
!! TCTTAATCCTCTGGTTCTAT+GGG - contig434end:10596-10615 MsG0080048773.01.T01:exon 35.0%
!!! GATAATCTCCCCAACTTTTT+TGG + contig434end:16688-16707 None:intergenic 35.0%
!!! TACCCTTATGGTTTTATCAG+TGG + contig434end:15387-15406 None:intergenic 35.0%
AAACATAACTTGGATGGCTG+AGG - contig434end:14510-14529 MsG0080048773.01.T01:intron 40.0%
AAATGCATGGCAATGGATCA+TGG - contig434end:16039-16058 MsG0080048773.01.T01:CDS 40.0%
AAATGTTCGTGCCAAATGCA+CGG - contig434end:12183-12202 MsG0080048773.01.T01:CDS 40.0%
AACCGAGTTCAAAACTTGAC+CGG + contig434end:10682-10701 None:intergenic 40.0%
AAGACAGCCATTTGTCATGT+AGG - contig434end:14430-14449 MsG0080048773.01.T01:intron 40.0%
AAGCTGTGCAGATTCTTCTA+AGG - contig434end:13131-13150 MsG0080048773.01.T01:intron 40.0%
AAGTCCTAGGGAACAAAGAT+TGG - contig434end:12576-12595 MsG0080048773.01.T01:intron 40.0%
AATTTGCGAGCTCAATCACT+TGG - contig434end:10728-10747 MsG0080048773.01.T01:intron 40.0%
ACAATCACGATTTAAGTCCC+TGG + contig434end:12741-12760 None:intergenic 40.0%
ACAGTCCCTTGTAGTATATG+AGG + contig434end:14855-14874 None:intergenic 40.0%
ACTAAATGATACGTTTGGCC+AGG - contig434end:12720-12739 MsG0080048773.01.T01:intron 40.0%
AGAAGTTACACAGCTGGTAT+TGG + contig434end:11022-11041 None:intergenic 40.0%
AGCTGTGCAGATTCTTCTAA+GGG - contig434end:13132-13151 MsG0080048773.01.T01:intron 40.0%
AGGAAATCCTATGCATACCA+AGG - contig434end:12221-12240 MsG0080048773.01.T01:CDS 40.0%
AGTGACTTACTGATATGGAC+AGG - contig434end:10989-11008 MsG0080048773.01.T01:intron 40.0%
AGTGATCTCAACTTCCAAAG+AGG - contig434end:11625-11644 MsG0080048773.01.T01:intron 40.0%
AGTGCAAGTAAGCATGTTGA+AGG - contig434end:16287-16306 MsG0080048773.01.T01:intron 40.0%
ATAAGTCCACTGAGAACATG+AGG + contig434end:12019-12038 None:intergenic 40.0%
ATCACATCTTGAGGATCCAT+TGG + contig434end:11227-11246 None:intergenic 40.0%
ATCATCAATGATGCTGCATG+AGG + contig434end:11929-11948 None:intergenic 40.0%
ATCTTGCTGGTACATACTCT+TGG - contig434end:13209-13228 MsG0080048773.01.T01:intron 40.0%
ATTGAGCAATTTCTGCATCC+TGG - contig434end:14082-14101 MsG0080048773.01.T01:intron 40.0%
CAATATGACATGGATACGTG+AGG + contig434end:13754-13773 None:intergenic 40.0%
CAATTGTTAAGGAGAAGGCA+AGG - contig434end:10356-10375 MsG0080048773.01.T01:exon 40.0%
CAGTCCCTTGTAGTATATGA+GGG + contig434end:14854-14873 None:intergenic 40.0%
CATCACCTTAATCATCATGG+TGG - contig434end:14755-14774 MsG0080048773.01.T01:intron 40.0%
CCACTTAAAAGACTGTCTAG+TGG + contig434end:15362-15381 None:intergenic 40.0%
CGTTTGGTTGCGAAATGAAA+TGG - contig434end:17479-17498 MsG0080048773.01.T01:exon 40.0%
CTAAATGATACGTTTGGCCA+GGG - contig434end:12721-12740 MsG0080048773.01.T01:intron 40.0%
CTACAGGTAAGCTTCAAAGA+AGG - contig434end:13334-13353 MsG0080048773.01.T01:intron 40.0%
CTCAACTTCCAAAGAGGAAA+CGG - contig434end:11631-11650 MsG0080048773.01.T01:intron 40.0%
CTCTTAGGTTCTGTTTGGAT+TGG - contig434end:14276-14295 MsG0080048773.01.T01:CDS 40.0%
CTGCCTTATAGTTTAGAGAG+AGG - contig434end:13392-13411 MsG0080048773.01.T01:CDS 40.0%
GAAAATGTGGTTAGAAGTGG+TGG + contig434end:15793-15812 None:intergenic 40.0%
GAGAATCATATACAGCTGCA+TGG - contig434end:13236-13255 MsG0080048773.01.T01:intron 40.0%
GATACGAAACTTCAACTGGT+TGG - contig434end:13303-13322 MsG0080048773.01.T01:intron 40.0%
GATGTTCAGGTCTGAAAATG+TGG + contig434end:15806-15825 None:intergenic 40.0%
GCAAGCAGAAATCATAGACT+CGG - contig434end:11437-11456 MsG0080048773.01.T01:CDS 40.0%
GCAATATGCCTCAAGGATTT+GGG + contig434end:14678-14697 None:intergenic 40.0%
GGTCCACTGATAAAACCATA+AGG - contig434end:15381-15400 MsG0080048773.01.T01:CDS 40.0%
GTGACTTACTGATATGGACA+GGG - contig434end:10990-11009 MsG0080048773.01.T01:intron 40.0%
TAAGCCATGAGATGGCTATA+AGG + contig434end:13930-13949 None:intergenic 40.0%
TAAGTCCACTGAGAACATGA+GGG + contig434end:12018-12037 None:intergenic 40.0%
TACAAGGGACTGTTATTCAG+TGG - contig434end:14862-14881 MsG0080048773.01.T01:intron 40.0%
TACCAATGTCTGTGTGAGTA+TGG + contig434end:17122-17141 None:intergenic 40.0%
TACTGAGAAGGGACTAATCA+AGG - contig434end:16762-16781 MsG0080048773.01.T01:intron 40.0%
TAGCCGATGATCTGAACAAA+TGG + contig434end:12366-12385 None:intergenic 40.0%
TATCGACAAGTGTCAGACAT+TGG - contig434end:17203-17222 MsG0080048773.01.T01:exon 40.0%
TCAAACCACCTACAAGAAGT+TGG - contig434end:16210-16229 MsG0080048773.01.T01:CDS 40.0%
TCACATCTTGAGGATCCATT+GGG + contig434end:11226-11245 None:intergenic 40.0%
TCAGTTGTTAGGAAGCTTCA+AGG - contig434end:10166-10185 MsG0080048773.01.T01:exon 40.0%
TCGCATCACCTTAATCATCA+TGG - contig434end:14752-14771 MsG0080048773.01.T01:intron 40.0%
TCTCAGATGCAGAATTACTG+AGG + contig434end:14048-14067 None:intergenic 40.0%
TGAAGTAGAAGTTACACAGC+TGG + contig434end:11028-11047 None:intergenic 40.0%
TGATCCAATCTTTGTTCCCT+AGG + contig434end:12583-12602 None:intergenic 40.0%
TGATTTAAATTGCCGTGTCG+AGG - contig434end:11361-11380 MsG0080048773.01.T01:intron 40.0%
TGCAATATGCCTCAAGGATT+TGG + contig434end:14679-14698 None:intergenic 40.0%
TGCATTCTGTTAACTACACG+AGG - contig434end:12610-12629 MsG0080048773.01.T01:intron 40.0%
TGCTCCCTCATATACTACAA+GGG - contig434end:14847-14866 MsG0080048773.01.T01:intron 40.0%
TGCTTTATGGAGAGATTCCA+TGG - contig434end:10413-10432 MsG0080048773.01.T01:exon 40.0%
TGGTCAATCTGCTTGAATCA+AGG + contig434end:11283-11302 None:intergenic 40.0%
TGTAATACTAGGCTGGCAAA+AGG + contig434end:16941-16960 None:intergenic 40.0%
TGTCCCTAAATATAAGTCCG+CGG - contig434end:16548-16567 MsG0080048773.01.T01:intron 40.0%
TGTTCTTGCATCACATCTTG+AGG + contig434end:11236-11255 None:intergenic 40.0%
TTCAGCTCTTAGGTTCTGTT+TGG - contig434end:14271-14290 MsG0080048773.01.T01:CDS 40.0%
TTGATTCAAGCAGATTGACC+AGG - contig434end:11282-11301 MsG0080048773.01.T01:CDS 40.0%
TTGCTCCCTCATATACTACA+AGG - contig434end:14846-14865 MsG0080048773.01.T01:intron 40.0%
TTGCTGATGAGCTAGAGATT+AGG + contig434end:16487-16506 None:intergenic 40.0%
TTTATGGAGAGATTCCATGG+TGG - contig434end:10416-10435 MsG0080048773.01.T01:exon 40.0%
! AAAAGGTCTGGGATATTAGG+GGG - contig434end:15267-15286 MsG0080048773.01.T01:intron 40.0%
! AACAACATCTTTTGTGGACC+TGG + contig434end:11303-11322 None:intergenic 40.0%
! AACTTTCTTCGCGGTTTTTC+TGG + contig434end:11463-11482 None:intergenic 40.0%
! ATTTTTGTGGCAGTATGGGA+AGG - contig434end:11196-11215 MsG0080048773.01.T01:CDS 40.0%
! CCACTAGACAGTCTTTTAAG+TGG - contig434end:15359-15378 MsG0080048773.01.T01:CDS 40.0%
! GAAAAGGTCTGGGATATTAG+GGG - contig434end:15266-15285 MsG0080048773.01.T01:intron 40.0%
! GGTGATCAGGTTGTAATTGA+TGG + contig434end:12456-12475 None:intergenic 40.0%
! GTTTTGCTACCTTCATGTCT+TGG - contig434end:15905-15924 MsG0080048773.01.T01:CDS 40.0%
! TCATCTTCATCAAGCATTGC+TGG + contig434end:10091-10110 None:intergenic 40.0%
! TGACTGGTCAATGATTGTTC+CGG - contig434end:10660-10679 MsG0080048773.01.T01:intron 40.0%
!! GAGAGGAGTACCAAAAAAGT+TGG - contig434end:16675-16694 MsG0080048773.01.T01:intron 40.0%
!! GAGGAGTACCAAAAAAGTTG+GGG - contig434end:16677-16696 MsG0080048773.01.T01:intron 40.0%
!! GGAGTGTTTGGTGTATTATC+AGG - contig434end:10387-10406 MsG0080048773.01.T01:exon 40.0%
!! GTCTTAATCCTCTGGTTCTA+TGG - contig434end:10595-10614 MsG0080048773.01.T01:exon 40.0%
!!! CATGTTTTGATGATAGGGAG+AGG + contig434end:13284-13303 None:intergenic 40.0%
!!! TTCCGGTCAAGTTTTGAACT+CGG - contig434end:10677-10696 MsG0080048773.01.T01:intron 40.0%
AACCACCTACAAGAAGTTGG+AGG - contig434end:16213-16232 MsG0080048773.01.T01:CDS 45.0%
AAGCACCTAAGAGACTGCTT+GGG - contig434end:14324-14343 MsG0080048773.01.T01:CDS 45.0%
AAGGACAATACCTTTCCCTG+AGG + contig434end:14158-14177 None:intergenic 45.0%
AAGTCCACTGAGAACATGAG+GGG + contig434end:12017-12036 None:intergenic 45.0%
AAGTTGGGGAGATTATCAGC+AGG - contig434end:16691-16710 MsG0080048773.01.T01:intron 45.0%
ACCAGTCATCAATTACCTCC+CGG + contig434end:10648-10667 None:intergenic 45.0%
ACTGCCTTATAGCCATCTCA+TGG - contig434end:13923-13942 MsG0080048773.01.T01:intron 45.0%
AGGAGATAATGTGGTAGCCA+TGG - contig434end:16439-16458 MsG0080048773.01.T01:CDS 45.0%
AGGTAAGCATGGGAAATGCA+TGG - contig434end:16026-16045 MsG0080048773.01.T01:CDS 45.0%
AGGTGTAGAAATGGAGCAAG+AGG + contig434end:12151-12170 None:intergenic 45.0%
AGTTGGGGAGATTATCAGCA+GGG - contig434end:16692-16711 MsG0080048773.01.T01:intron 45.0%
ATCCAGCCCTGTTGACAATT+TGG + contig434end:16852-16871 None:intergenic 45.0%
CACCATACTCACACAGACAT+TGG - contig434end:17117-17136 MsG0080048773.01.T01:exon 45.0%
CATACACAAATCCTTGAGGC+AGG - contig434end:14802-14821 MsG0080048773.01.T01:intron 45.0%
CGTGTAGACAGCCTTAATCT+TGG - contig434end:12949-12968 MsG0080048773.01.T01:CDS 45.0%
CTCAAACAGATCTGGTTGAG+AGG - contig434end:16658-16677 MsG0080048773.01.T01:intron 45.0%
CTGGTAATCGAGAGTTCAAC+CGG - contig434end:10626-10645 MsG0080048773.01.T01:exon 45.0%
CTTTCATCCAATTCCACTCC+AGG + contig434end:14103-14122 None:intergenic 45.0%
GAAGTCTTCTACCACTTCCA+TGG + contig434end:16459-16478 None:intergenic 45.0%
GATGGCTGAGGAGTTACATA+GGG - contig434end:14522-14541 MsG0080048773.01.T01:intron 45.0%
GCAATTCTCGGAAGGAGTAA+AGG - contig434end:14468-14487 MsG0080048773.01.T01:intron 45.0%
GCAGCTAAAATCTGGTGATC+AGG + contig434end:12469-12488 None:intergenic 45.0%
GGAAGCTTCAAGGTGATGAA+TGG - contig434end:10176-10195 MsG0080048773.01.T01:exon 45.0%
GGTTGAACTCTCGATTACCA+GGG + contig434end:10627-10646 None:intergenic 45.0%
GTATGAACTCGCTAAGCCTT+TGG + contig434end:17053-17072 None:intergenic 45.0%
GTGGATAGTCCTTACCTTCA+AGG + contig434end:15774-15793 None:intergenic 45.0%
GTGTTGTGCAGCAACAACTA+AGG - contig434end:13816-13835 MsG0080048773.01.T01:intron 45.0%
TAAGCACCTAAGAGACTGCT+TGG - contig434end:14323-14342 MsG0080048773.01.T01:CDS 45.0%
TAATGTGGTAGCCATGGAAG+TGG - contig434end:16445-16464 MsG0080048773.01.T01:CDS 45.0%
TCCAGCCCTGTTGACAATTT+GGG + contig434end:16851-16870 None:intergenic 45.0%
TCGTAGTTCCGTTTCCTCTT+TGG + contig434end:11642-11661 None:intergenic 45.0%
TCGTTGAACCATCCGTTATC+AGG + contig434end:15848-15867 None:intergenic 45.0%
TGCTTCCTCCAACTTCTTGT+AGG + contig434end:16221-16240 None:intergenic 45.0%
TGCTTGCGTGATCAAAGAGA+TGG + contig434end:11424-11443 None:intergenic 45.0%
TGGTAATCGAGAGTTCAACC+GGG - contig434end:10627-10646 MsG0080048773.01.T01:exon 45.0%
TGTTCACACCCAAATCCTTG+AGG - contig434end:14667-14686 MsG0080048773.01.T01:intron 45.0%
TTCCTCCAACTTCTTGTAGG+TGG + contig434end:16218-16237 None:intergenic 45.0%
TTGACATCCAAGCCATGAGA+TGG + contig434end:14005-14024 None:intergenic 45.0%
TTGTTAAGGAGAAGGCAAGG+AGG - contig434end:10359-10378 MsG0080048773.01.T01:exon 45.0%
! TGGTTTCTCCGAAGCTTGTT+TGG - contig434end:10230-10249 MsG0080048773.01.T01:exon 45.0%
!! AAGGAGGTACAAGGAGTGTT+TGG - contig434end:10375-10394 MsG0080048773.01.T01:exon 45.0%
!! AATCCTCTGGTTCTATGGGA+CGG - contig434end:10600-10619 MsG0080048773.01.T01:exon 45.0%
!! GCACTCAGCTAGTCTTGTAT+GGG - contig434end:15289-15308 MsG0080048773.01.T01:CDS 45.0%
!!! ACCTGTTTTGGTACGGTTCA+AGG - contig434end:15069-15088 MsG0080048773.01.T01:CDS 45.0%
!!! CCTGTTTTGGTACGGTTCAA+GGG - contig434end:15070-15089 MsG0080048773.01.T01:CDS 45.0%
!!! AAATGTAAATTTTTAAAAAA+CGG + contig434end:12982-13001 None:intergenic 5.0%
ACGGTTCGAGGCCAAGATTA+AGG + contig434end:12963-12982 None:intergenic 50.0%
AGGTCGCACTCTAGATGTTC+AGG + contig434end:15819-15838 None:intergenic 50.0%
AGTTCCCCTCATGTTCTCAG+TGG - contig434end:12010-12029 MsG0080048773.01.T01:intron 50.0%
CCATCTCATGGCTTAGAGAG+AGG - contig434end:13935-13954 MsG0080048773.01.T01:intron 50.0%
CCCTTGAACCGTACCAAAAC+AGG + contig434end:15073-15092 None:intergenic 50.0%
CCTCTCTCTAAGCCATGAGA+TGG + contig434end:13938-13957 None:intergenic 50.0%
CGGCTATTAATCTGCTGCAG+AGG - contig434end:12380-12399 MsG0080048773.01.T01:intron 50.0%
CGGTTGAACTCTCGATTACC+AGG + contig434end:10628-10647 None:intergenic 50.0%
CTCATCAGCAAGCAGCATTC+AGG - contig434end:16496-16515 MsG0080048773.01.T01:intron 50.0%
CTGCAATAACTGCTCCACCA+TGG + contig434end:10433-10452 None:intergenic 50.0%
CTGCACAGACTCAAGCATAC+AGG - contig434end:16077-16096 MsG0080048773.01.T01:CDS 50.0%
CTGGTTGGATCAGAGTCTAC+AGG - contig434end:13318-13337 MsG0080048773.01.T01:intron 50.0%
GCAATTGTGGCATGACACCA+AGG + contig434end:12837-12856 None:intergenic 50.0%
GCAATTTCTGCATCCTGGAG+TGG - contig434end:14087-14106 MsG0080048773.01.T01:intron 50.0%
GCAGAATTACTGAGGCTGTC+TGG + contig434end:14040-14059 None:intergenic 50.0%
GCATGGGAAATGCATGGCAA+TGG - contig434end:16032-16051 MsG0080048773.01.T01:CDS 50.0%
GCTGGTACATACTCTTGGAC+AGG - contig434end:13214-13233 MsG0080048773.01.T01:intron 50.0%
GGATGGCTGAGGAGTTACAT+AGG - contig434end:14521-14540 MsG0080048773.01.T01:intron 50.0%
GTATGGGAAGGTTCACCCAA+TGG - contig434end:11208-11227 MsG0080048773.01.T01:CDS 50.0%
GTCTGTGTGAGTATGGTGTC+CGG + contig434end:17115-17134 None:intergenic 50.0%
GTTCATCATTTGCGCGCACA+TGG - contig434end:15563-15582 MsG0080048773.01.T01:CDS 50.0%
GTTCTCCCAAGCAGTCTCTT+AGG + contig434end:14332-14351 None:intergenic 50.0%
TAAAGTTGCGACCTGCCTCA+AGG + contig434end:14816-14835 None:intergenic 50.0%
TAATCGAGAGTTCAACCGGG+AGG - contig434end:10630-10649 MsG0080048773.01.T01:intron 50.0%
TCAAGTAGCAACGCAGACAC+CGG - contig434end:17093-17112 MsG0080048773.01.T01:exon 50.0%
TCCCAAATTGTCAACAGGGC+TGG - contig434end:16847-16866 MsG0080048773.01.T01:intron 50.0%
TCTGCATCCTGGAGTGGAAT+TGG - contig434end:14093-14112 MsG0080048773.01.T01:intron 50.0%
TGTGCGCGCAAATGATGAAC+TGG + contig434end:15563-15582 None:intergenic 50.0%
! AAACTCAAGCGCCGTGCATT+TGG + contig434end:12197-12216 None:intergenic 50.0%
! ACCGGGAGGTAATTGATGAC+TGG - contig434end:10644-10663 MsG0080048773.01.T01:intron 50.0%
! GCATGGCTTCTGAGAAAGAC+AGG - contig434end:13253-13272 MsG0080048773.01.T01:intron 50.0%
!! GGCACTCAGCTAGTCTTGTA+TGG - contig434end:15288-15307 MsG0080048773.01.T01:CDS 50.0%
!!! CACGGCGCTTGAGTTTTTTC+AGG - contig434end:12201-12220 MsG0080048773.01.T01:CDS 50.0%
CATCCGTTATCAGGCCACTC+AGG + contig434end:15839-15858 None:intergenic 55.0%
CGACCTGAGTGGCCTGATAA+CGG - contig434end:15833-15852 MsG0080048773.01.T01:CDS 55.0%
GCGGTCTGTGACAGCAATTG+TGG + contig434end:12850-12869 None:intergenic 55.0%
GGAGATTATCAGCAGGGAGC+AGG - contig434end:16698-16717 MsG0080048773.01.T01:intron 55.0%
! CATCTAGAGTGCGACCTGAG+TGG - contig434end:15822-15841 MsG0080048773.01.T01:CDS 55.0%
! GGAGAAGGCAAGGAGGTACA+AGG - contig434end:10366-10385 MsG0080048773.01.T01:exon 55.0%
!! CTGAGTGGCCTGATAACGGA+TGG - contig434end:15837-15856 MsG0080048773.01.T01:CDS 55.0%
GGTCCGTCCCATAGAACCAG+AGG + contig434end:10606-10625 None:intergenic 60.0%
! TGGTTCTATGGGACGGACCC+TGG - contig434end:10607-10626 MsG0080048773.01.T01:exon 60.0%
Chromosome Type Strat End Strand Name
contig434end gene 10001 17511 10001 ID=MsG0080048773.01;
contig434end mRNA 10001 17511 10001 ID=MsG0080048773.01.T01;Parent=MsG0080048773.01
contig434end exon 10001 10648 10001 ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end CDS 10631 10648 10631 ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end CDS 10729 10845 10729 ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end exon 10729 10845 10729 ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end CDS 10995 11120 10995 ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end exon 10995 11120 10995 ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end CDS 11190 11336 11190 ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end exon 11190 11336 11190 ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end CDS 11414 11524 11414 ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end exon 11414 11524 11414 ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end CDS 11887 12009 11887 ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end exon 11887 12009 11887 ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end CDS 12109 12240 12109 ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end exon 12109 12240 12109 ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end CDS 12939 13060 12939 ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end exon 12939 13060 12939 ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end CDS 13346 13467 13346 ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end exon 13346 13467 13346 ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end CDS 13547 13695 13547 ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end exon 13547 13695 13547 ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end CDS 14173 14412 14173 ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end exon 14173 14412 14173 ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end CDS 14996 15137 14996 ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end exon 14996 15137 14996 ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end CDS 15270 16303 15270 ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end exon 15270 16303 15270 ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end CDS 16429 16501 16429 ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end exon 16429 16501 16429 ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end CDS 17039 17436 17039 ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end exon 17039 17511 17039 ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
Gene Sequence

>MsG0080048773.01.T01

ATGCTTCAAGTTCCAGCAATGCTTGATGAAGATGAATTCACTGCTTCAATTCCAAATCATTACTTGGTTTGTTGCTCTTATTTTTATCTCTCAGTTGTTAGGAAGCTTCAAGGTGATGAATGGCAAGCTGCACTTCATTTTCTTCAAGCTGTTTTGGTTTCTCCGAAGCTTGTTTGGAATGAATTTGCACCTCAACTTTGTGAAAGTCTTTTCAAGAAGCATGAAAATAGAAGTTTGGAGTTTGTTAGTTCTTTGAATTCTGAGGAAGAAATCAATGAAGCAATTGTTAAGGAGAAGGCAAGGAGGTACAAGGAGTGTTTGGTGTATTATCAGGTCATGCTTTATGGAGAGATTCCATGGTGGAGCAGTTATTGCAGCAATAATTCAGCAAATTATATGGATGTATCCAATACCAGCTGTGTAACTTCTACTTCAGTTCAACATGAACAAAGATTGAAAACTTGCAATACATATGGGAAGGTTCACCCAATGGATCCTCAAGATGTGATGCAAGAACAGTTGAGAGCAAAAAGCATAATTAACCTTGATTCAAGCAGATTGACCAGGTCCACAAAAGATGTTGTTGCTTTATCGATTTCAAAACGGATAGAAAGAATGAGTATTGATTTAAATTGCCGTGTCGAGGATTTATTAATCGAAGAAGCATTGCAGCCACTAGAATTCCATCTCTTTGATCACGCAAGCAGAAATCATAGACTCGGCCAGAAAAACCGCGAAGAAAGTTCTAAGATGAAATTGCAAACATCATTAGAAAAATGTGGTGAAGAGTATATTGTAGACACTGCATCGATTTTCGAGAGTTTAATCAGTTCATCAGGAACTAATTATGGTTCATTAAAGGATGTGATTTTGGATGAACTACTAATAGTGATCTCAACTTCCAAAGAGGAAACGGAACTACGAACATCAGTATCAATTCTAACAACAATAATTTCAAGGAACAAGTCAATTATAGAAGATGTGAAGAAAAAAGGTTTAAGGTTATGTGATTTAGCAAGTGCTCTAAAACAAAATGTTCATGAAGCAGCAATTCTAATCTATTTAATAAATCCATCTCCTATAGATATAAATACACTGGAAATTTTGCCAATATTAGTAGAGATTGTATGCACTTCATCAAAAAGCTGTTACAAGAATAATAAGCAAGAAGAATCACTTCTTATGACACCTCATGCAGCATCATTGATGATCATTGAAGAACTTGTAACTTCATTTGACTATGCTACAAATAACATGCATTTGGAAGTAATCAGTTCCCCTCATGTTCTCAGTGGACTTATAGAAGTTGCAAGAAATCATAATCTTGAAGAGTTTTTGTCTTTGACTACCATTCTCATAAAATGCATGCAGTTTGATTCACAGTGTAGAAAGTATGTGTCACAGTTCACTCCTCTTGCTCCATTTCTACACCTTTTAGAGACAGAAAATGTTCGTGCCAAATGCACGGCGCTTGAGTTTTTTCAGGAAATCCTATGCATACCAAGATCATCGGCTATTAATCTGCTGCAGAGGATAAAAAAAGAAAGCAGAATCAATATTATGCAGATACTAATGCATTGTGTCCATCAATTACAACCTGATCACCAGATTTTAGCTGCTAACCTATTGATTCAGTTAGACACATTGAACCCAACTGATAAAAGTTTGTTCAGAGAAGAAGCTGTGCAGATTCTTCTAAGGGAATTGACATCTGAAGAAAGCTCAGAACATATATTATCTTCATCCATTCTATCAAATCTTGCTGGTACATACTCTTGGACAGGAGAATCATATACAGCTGCATGGCTTCTGAGAAAGACAGGCTTGACCTCTCCCTATCATCAAAACATGATACGAAACTTCAACTGGTTGGATCAGAGTCTACAGTGTTGTGCAGCAACAACTAAGGACATAAATAAAATTCATAACATGCAGGATACAAGTATAGATGTATGGTGCAGCAAAATTTCCAAATGTATCATAAGTGTTGGAGACTGCCTTATAGCCATCTCATGGCTTAGAGAGAGGACTGAGAACCTCAGTAATTCTGCATCTGAGATTATATTAAGAGGAATTGAGCAATTTCTGCATCCTGGAGTGGAATTGGATGAAAGACTTTTGGCATGTATGTGCATGTATAATTATGCCTCAGGGAAAGGAAAGCAAAAACTAATGCAATTCTCGGAAGGAGTAAAGGAATCATTAAGACGACTTTCAAACATAACTTGGATGGCTGAGGAGTTACATAGGGTAGCTGATTTCTTGCTTCAAAACACATCAGTCTGGGATATTAGGGGGCACTCAGCTAGTCTTGTATGGGACATTAAGGAGCACAAGAAGTCAGTGACATGCTTTTCAATTTATGAGCCACTAGACAGTCTTTTAAGTGGGTCCACTGATAAAACCATAAGGGTGTGGAAAATGAACCAAAGAAATCTTGAATGTCTTGAAGTAATAGTCATGAAGGAACCAGTTCATCATTTGCGCGCACATGGCGAGACAATTTTCGCAATTACTGAAAAACAAGGAATAAAGCGTGTTAACAAATCAAGAGAAATAAGAGATATTTTCAAAGGTAAGCATGGGAAATGCATGGCAATGGATCATGGAAAGTTATATATTGGCTGCACAGACTCAAGCATACAGGAGTATAACACAACACACAATAGGGAACTAGAAATCAAACCACCTACAAGAAGTTGGAGGAAGCAAAGTAAACCTATCCATTCAATTGTAGCCTATAGAGATTGGCTCTATAGTGCAAGTAAGCATGTTGAAGGAACAACATTCAAGGAATGGAAAAGAAGTGCAAAACCCAAAATTTCAATCCTTACTGACAAAGGAGATAATGTGGTAGCCATGGAAGTGGTAGAAGACTTCTTATACCTAATCTCTAGCTCATCAGCAAGCAGCATTCAGATCTGGTTGAGAGGAGTACCAAAAAAGTTGGGGAGATTATCAGCAGGGAGCAGGATAACAAGCATCTATGCTGCCAATGACATTATTTTTTGTGGTACTGAGAAGGGACTAATCAAGGGCTGGATCCCTCTGTAA

Protein sequence

>MsG0080048773.01.T01

MLQVPAMLDEDEFTASIPNHYLVCCSYFYLSVVRKLQGDEWQAALHFLQAVLVSPKLVWNEFAPQLCESLFKKHENRSLEFVSSLNSEEEINEAIVKEKARRYKECLVYYQVMLYGEIPWWSSYCSNNSANYMDVSNTSCVTSTSVQHEQRLKTCNTYGKVHPMDPQDVMQEQLRAKSIINLDSSRLTRSTKDVVALSISKRIERMSIDLNCRVEDLLIEEALQPLEFHLFDHASRNHRLGQKNREESSKMKLQTSLEKCGEEYIVDTASIFESLISSSGTNYGSLKDVILDELLIVISTSKEETELRTSVSILTTIISRNKSIIEDVKKKGLRLCDLASALKQNVHEAAILIYLINPSPIDINTLEILPILVEIVCTSSKSCYKNNKQEESLLMTPHAASLMIIEELVTSFDYATNNMHLEVISSPHVLSGLIEVARNHNLEEFLSLTTILIKCMQFDSQCRKYVSQFTPLAPFLHLLETENVRAKCTALEFFQEILCIPRSSAINLLQRIKKESRINIMQILMHCVHQLQPDHQILAANLLIQLDTLNPTDKSLFREEAVQILLRELTSEESSEHILSSSILSNLAGTYSWTGESYTAAWLLRKTGLTSPYHQNMIRNFNWLDQSLQCCAATTKDINKIHNMQDTSIDVWCSKISKCIISVGDCLIAISWLRERTENLSNSASEIILRGIEQFLHPGVELDERLLACMCMYNYASGKGKQKLMQFSEGVKESLRRLSNITWMAEELHRVADFLLQNTSVWDIRGHSASLVWDIKEHKKSVTCFSIYEPLDSLLSGSTDKTIRVWKMNQRNLECLEVIVMKEPVHHLRAHGETIFAITEKQGIKRVNKSREIRDIFKGKHGKCMAMDHGKLYIGCTDSSIQEYNTTHNRELEIKPPTRSWRKQSKPIHSIVAYRDWLYSASKHVEGTTFKEWKRSAKPKISILTDKGDNVVAMEVVEDFLYLISSSSASSIQIWLRGVPKKLGRLSAGSRITSIYAANDIIFCGTEKGLIKGWIPL*