AlfalfaGEDB | MsG0080048773.01

M. sativa cultivar ZhongmuNo.1 / MsG0080048773.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048773.01.T01	XP_013463227.1	88.827	1083	35	7	1	1017	87	1149	0	1915

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048773.01.T01	C6L7U1	25.25	800	507	21	287	1014	702	1482	1.05E-58	224

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048773.01.T01	A0A072VGE6	88.827	1083	35	7	1	1017	87	1149	0.0	1915

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047955.01	MsG0080048773.01	0.800760	1.238938e-48	5.815926e-46
MsG0080047989.01	MsG0080048773.01	0.810055	1.394316e-50	8.320719e-48
MsG0080048065.01	MsG0080048773.01	0.827942	1.183885e-54	1.159851e-51
MsG0080048191.01	MsG0080048773.01	0.836211	1.068870e-56	1.338080e-53
MsG0080048198.01	MsG0080048773.01	0.815883	7.357271e-52	5.134479e-49
MsG0080048528.01	MsG0080048773.01	0.812419	4.281224e-51	2.720805e-48
MsG0080048660.01	MsG0080048773.01	0.812705	3.705884e-51	2.372917e-48
MsG0080048727.01	MsG0080048773.01	0.880822	3.997761e-70	2.287508e-66
MsG0080048748.01	MsG0080048773.01	0.830667	2.580516e-55	2.737201e-52
MsG0080048773.01	MsG0080048777.01	0.844755	6.212402e-59	1.013035e-55

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048773.01.T01	MTR_2g436530	88.827	1083	35	7	1	1017	87	1149	0.0	1915
MsG0080048773.01.T01	MTR_1g090320	24.749	796	516	21	287	1014	705	1485	1.05e-53	205
MsG0080048773.01.T01	MTR_1g090320	24.749	796	516	21	287	1014	707	1487	1.09e-53	205
MsG0080048773.01.T01	MTR_8g103227	22.822	815	508	20	287	1014	552	1332	1.79e-53	204

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048773.01.T01	AT3G06880	49.157	830	335	8	257	1017	453	1264	0.0	775
MsG0080048773.01.T01	AT3G06880	51.261	119	42	4	1	117	102	206	4.94e-24	110
MsG0080048773.01.T01	AT3G06880	48.786	824	335	8	257	1011	453	1258	0.0	760
MsG0080048773.01.T01	AT3G06880	51.261	119	42	4	1	117	102	206	4.49e-24	110
MsG0080048773.01.T01	AT3G06880	47.005	868	335	9	257	1017	453	1302	0.0	756
MsG0080048773.01.T01	AT3G06880	51.261	119	42	4	1	117	102	206	4.77e-24	110
MsG0080048773.01.T01	AT3G06880	47.776	787	324	8	257	974	453	1221	0.0	703
MsG0080048773.01.T01	AT3G06880	51.261	119	42	4	1	117	102	206	5.16e-24	110
MsG0080048773.01.T01	AT3G06880	47.837	786	323	8	257	973	453	1220	0.0	702
MsG0080048773.01.T01	AT3G06880	51.261	119	42	4	1	117	102	206	4.63e-24	110

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Find 23 sgRNAs with CRISPR-Local

Find 414 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTTTCACAAAGTTG+AGG	0.535670	contig434end:+17225	None:intergenic
AAGGAGGTACAAGGAGTGTT+TGG	0.460275	contig434end:-17115	MsG0080048773.01.T01:exon
AATCAATGAAGCAATTGTTA+AGG	0.454034	contig434end:-17145	MsG0080048773.01.T01:exon
AATTCATTCCAAACAAGCTT+CGG	0.453656	contig434end:+17252	None:intergenic
AGGTTAAAAGATCTTTGTTC+CGG	0.382867	contig434end:+17453	None:intergenic
CAACAAACCAAGTAATGATT+TGG	0.324417	contig434end:+17363	None:intergenic
CAATTGTTAAGGAGAAGGCA+AGG	0.616510	contig434end:-17134	MsG0080048773.01.T01:exon
CTGCAATAACTGCTCCACCA+TGG	0.624772	contig434end:+17060	None:intergenic
GAAGCATGAAAATAGAAGTT+TGG	0.375640	contig434end:-17199	MsG0080048773.01.T01:exon
GGAAGCTTCAAGGTGATGAA+TGG	0.531953	contig434end:-17314	MsG0080048773.01.T01:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGACTTTCACAAAGTTG+AGG	+	contig434end:10268-10287	None:intergenic	30.0%
AAGTCACTAAATGATACGTT+TGG	-	contig434end:12715-12734	MsG0080048773.01.T01:intron	30.0%
AATTCATTCCAAACAAGCTT+CGG	+	contig434end:10241-10260	None:intergenic	30.0%
AATTGAAGTTCTTCTTACAG+AGG	+	contig434end:16876-16895	None:intergenic	30.0%
ACATCTTCAATATGTCTTAC+TGG	-	contig434end:13605-13624	MsG0080048773.01.T01:CDS	30.0%
ACCTTCAAGGCAATTTAATA+GGG	+	contig434end:15761-15780	None:intergenic	30.0%
ACTCTTGCTAATAGAAATCT+TGG	+	contig434end:15444-15463	None:intergenic	30.0%
ACTTTCAAACATAACTTGGA+TGG	-	contig434end:14504-14523	MsG0080048773.01.T01:intron	30.0%
AGGATACAAGTATAGATGTA+TGG	-	contig434end:13863-13882	MsG0080048773.01.T01:intron	30.0%
AGGTTAAAAGATCTTTGTTC+CGG	+	contig434end:10040-10059	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
contig434end	gene	10001	17511	10001	ID=MsG0080048773.01;
contig434end	mRNA	10001	17511	10001	ID=MsG0080048773.01.T01;Parent=MsG0080048773.01
contig434end	exon	10001	10648	10001	ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end	CDS	10631	10648	10631	ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end	CDS	10729	10845	10729	ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end	exon	10729	10845	10729	ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end	CDS	10995	11120	10995	ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end	exon	10995	11120	10995	ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end	CDS	11190	11336	11190	ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end	exon	11190	11336	11190	ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end	CDS	11414	11524	11414	ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end	exon	11414	11524	11414	ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end	CDS	11887	12009	11887	ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end	exon	11887	12009	11887	ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end	CDS	12109	12240	12109	ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end	exon	12109	12240	12109	ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end	CDS	12939	13060	12939	ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end	exon	12939	13060	12939	ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end	CDS	13346	13467	13346	ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end	exon	13346	13467	13346	ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end	CDS	13547	13695	13547	ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end	exon	13547	13695	13547	ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end	CDS	14173	14412	14173	ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end	exon	14173	14412	14173	ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end	CDS	14996	15137	14996	ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end	exon	14996	15137	14996	ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end	CDS	15270	16303	15270	ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end	exon	15270	16303	15270	ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end	CDS	16429	16501	16429	ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end	exon	16429	16501	16429	ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01
contig434end	CDS	17039	17436	17039	ID=MsG0080048773.01.T01.cds;Parent=MsG0080048773.01.T01
contig434end	exon	17039	17511	17039	ID=MsG0080048773.01.T01.exon;Parent=MsG0080048773.01.T01

Gene Sequence

>MsG0080048773.01.T01

ATGCTTCAAGTTCCAGCAATGCTTGATGAAGATGAATTCACTGCTTCAATTCCAAATCATTACTTGGTTTGTTGCTCTTATTTTTATCTCTCAGTTGTTAGGAAGCTTCAAGGTGATGAATGGCAAGCTGCACTTCATTTTCTTCAAGCTGTTTTGGTTTCTCCGAAGCTTGTTTGGAATGAATTTGCACCTCAACTTTGTGAAAGTCTTTTCAAGAAGCATGAAAATAGAAGTTTGGAGTTTGTTAGTTCTTTGAATTCTGAGGAAGAAATCAATGAAGCAATTGTTAAGGAGAAGGCAAGGAGGTACAAGGAGTGTTTGGTGTATTATCAGGTCATGCTTTATGGAGAGATTCCATGGTGGAGCAGTTATTGCAGCAATAATTCAGCAAATTATATGGATGTATCCAATACCAGCTGTGTAACTTCTACTTCAGTTCAACATGAACAAAGATTGAAAACTTGCAATACATATGGGAAGGTTCACCCAATGGATCCTCAAGATGTGATGCAAGAACAGTTGAGAGCAAAAAGCATAATTAACCTTGATTCAAGCAGATTGACCAGGTCCACAAAAGATGTTGTTGCTTTATCGATTTCAAAACGGATAGAAAGAATGAGTATTGATTTAAATTGCCGTGTCGAGGATTTATTAATCGAAGAAGCATTGCAGCCACTAGAATTCCATCTCTTTGATCACGCAAGCAGAAATCATAGACTCGGCCAGAAAAACCGCGAAGAAAGTTCTAAGATGAAATTGCAAACATCATTAGAAAAATGTGGTGAAGAGTATATTGTAGACACTGCATCGATTTTCGAGAGTTTAATCAGTTCATCAGGAACTAATTATGGTTCATTAAAGGATGTGATTTTGGATGAACTACTAATAGTGATCTCAACTTCCAAAGAGGAAACGGAACTACGAACATCAGTATCAATTCTAACAACAATAATTTCAAGGAACAAGTCAATTATAGAAGATGTGAAGAAAAAAGGTTTAAGGTTATGTGATTTAGCAAGTGCTCTAAAACAAAATGTTCATGAAGCAGCAATTCTAATCTATTTAATAAATCCATCTCCTATAGATATAAATACACTGGAAATTTTGCCAATATTAGTAGAGATTGTATGCACTTCATCAAAAAGCTGTTACAAGAATAATAAGCAAGAAGAATCACTTCTTATGACACCTCATGCAGCATCATTGATGATCATTGAAGAACTTGTAACTTCATTTGACTATGCTACAAATAACATGCATTTGGAAGTAATCAGTTCCCCTCATGTTCTCAGTGGACTTATAGAAGTTGCAAGAAATCATAATCTTGAAGAGTTTTTGTCTTTGACTACCATTCTCATAAAATGCATGCAGTTTGATTCACAGTGTAGAAAGTATGTGTCACAGTTCACTCCTCTTGCTCCATTTCTACACCTTTTAGAGACAGAAAATGTTCGTGCCAAATGCACGGCGCTTGAGTTTTTTCAGGAAATCCTATGCATACCAAGATCATCGGCTATTAATCTGCTGCAGAGGATAAAAAAAGAAAGCAGAATCAATATTATGCAGATACTAATGCATTGTGTCCATCAATTACAACCTGATCACCAGATTTTAGCTGCTAACCTATTGATTCAGTTAGACACATTGAACCCAACTGATAAAAGTTTGTTCAGAGAAGAAGCTGTGCAGATTCTTCTAAGGGAATTGACATCTGAAGAAAGCTCAGAACATATATTATCTTCATCCATTCTATCAAATCTTGCTGGTACATACTCTTGGACAGGAGAATCATATACAGCTGCATGGCTTCTGAGAAAGACAGGCTTGACCTCTCCCTATCATCAAAACATGATACGAAACTTCAACTGGTTGGATCAGAGTCTACAGTGTTGTGCAGCAACAACTAAGGACATAAATAAAATTCATAACATGCAGGATACAAGTATAGATGTATGGTGCAGCAAAATTTCCAAATGTATCATAAGTGTTGGAGACTGCCTTATAGCCATCTCATGGCTTAGAGAGAGGACTGAGAACCTCAGTAATTCTGCATCTGAGATTATATTAAGAGGAATTGAGCAATTTCTGCATCCTGGAGTGGAATTGGATGAAAGACTTTTGGCATGTATGTGCATGTATAATTATGCCTCAGGGAAAGGAAAGCAAAAACTAATGCAATTCTCGGAAGGAGTAAAGGAATCATTAAGACGACTTTCAAACATAACTTGGATGGCTGAGGAGTTACATAGGGTAGCTGATTTCTTGCTTCAAAACACATCAGTCTGGGATATTAGGGGGCACTCAGCTAGTCTTGTATGGGACATTAAGGAGCACAAGAAGTCAGTGACATGCTTTTCAATTTATGAGCCACTAGACAGTCTTTTAAGTGGGTCCACTGATAAAACCATAAGGGTGTGGAAAATGAACCAAAGAAATCTTGAATGTCTTGAAGTAATAGTCATGAAGGAACCAGTTCATCATTTGCGCGCACATGGCGAGACAATTTTCGCAATTACTGAAAAACAAGGAATAAAGCGTGTTAACAAATCAAGAGAAATAAGAGATATTTTCAAAGGTAAGCATGGGAAATGCATGGCAATGGATCATGGAAAGTTATATATTGGCTGCACAGACTCAAGCATACAGGAGTATAACACAACACACAATAGGGAACTAGAAATCAAACCACCTACAAGAAGTTGGAGGAAGCAAAGTAAACCTATCCATTCAATTGTAGCCTATAGAGATTGGCTCTATAGTGCAAGTAAGCATGTTGAAGGAACAACATTCAAGGAATGGAAAAGAAGTGCAAAACCCAAAATTTCAATCCTTACTGACAAAGGAGATAATGTGGTAGCCATGGAAGTGGTAGAAGACTTCTTATACCTAATCTCTAGCTCATCAGCAAGCAGCATTCAGATCTGGTTGAGAGGAGTACCAAAAAAGTTGGGGAGATTATCAGCAGGGAGCAGGATAACAAGCATCTATGCTGCCAATGACATTATTTTTTGTGGTACTGAGAAGGGACTAATCAAGGGCTGGATCCCTCTGTAA

Protein sequence

>MsG0080048773.01.T01

MLQVPAMLDEDEFTASIPNHYLVCCSYFYLSVVRKLQGDEWQAALHFLQAVLVSPKLVWNEFAPQLCESLFKKHENRSLEFVSSLNSEEEINEAIVKEKARRYKECLVYYQVMLYGEIPWWSSYCSNNSANYMDVSNTSCVTSTSVQHEQRLKTCNTYGKVHPMDPQDVMQEQLRAKSIINLDSSRLTRSTKDVVALSISKRIERMSIDLNCRVEDLLIEEALQPLEFHLFDHASRNHRLGQKNREESSKMKLQTSLEKCGEEYIVDTASIFESLISSSGTNYGSLKDVILDELLIVISTSKEETELRTSVSILTTIISRNKSIIEDVKKKGLRLCDLASALKQNVHEAAILIYLINPSPIDINTLEILPILVEIVCTSSKSCYKNNKQEESLLMTPHAASLMIIEELVTSFDYATNNMHLEVISSPHVLSGLIEVARNHNLEEFLSLTTILIKCMQFDSQCRKYVSQFTPLAPFLHLLETENVRAKCTALEFFQEILCIPRSSAINLLQRIKKESRINIMQILMHCVHQLQPDHQILAANLLIQLDTLNPTDKSLFREEAVQILLRELTSEESSEHILSSSILSNLAGTYSWTGESYTAAWLLRKTGLTSPYHQNMIRNFNWLDQSLQCCAATTKDINKIHNMQDTSIDVWCSKISKCIISVGDCLIAISWLRERTENLSNSASEIILRGIEQFLHPGVELDERLLACMCMYNYASGKGKQKLMQFSEGVKESLRRLSNITWMAEELHRVADFLLQNTSVWDIRGHSASLVWDIKEHKKSVTCFSIYEPLDSLLSGSTDKTIRVWKMNQRNLECLEVIVMKEPVHHLRAHGETIFAITEKQGIKRVNKSREIRDIFKGKHGKCMAMDHGKLYIGCTDSSIQEYNTTHNRELEIKPPTRSWRKQSKPIHSIVAYRDWLYSASKHVEGTTFKEWKRSAKPKISILTDKGDNVVAMEVVEDFLYLISSSSASSIQIWLRGVPKKLGRLSAGSRITSIYAANDIIFCGTEKGLIKGWIPL*