AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000245.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000245.01.T01 MTR_1g019760 99.048 420 3 1 1 420 1 419 0.0 852
MsG0180000245.01.T01 MTR_3g101540 83.924 423 65 2 1 421 1 422 0.0 734
MsG0180000245.01.T01 MTR_3g101540 84.286 420 63 2 1 418 1 419 0.0 733
MsG0180000245.01.T01 MTR_1g019760 98.592 355 4 1 1 355 1 354 0.0 716
MsG0180000245.01.T01 MTR_7g112430 58.824 408 167 1 11 418 14 420 3.11e-172 490
MsG0180000245.01.T01 MTR_1g083750 56.585 410 177 1 11 419 14 423 4.51e-164 469
MsG0180000245.01.T01 MTR_1g110210 65.595 311 105 1 4 312 7 317 1.27e-153 439
MsG0180000245.01.T01 MTR_1g083750 57.100 331 141 1 90 419 1 331 1.47e-127 372
MsG0180000245.01.T01 MTR_7g029240 50.591 423 183 12 11 420 14 423 4.43e-123 365
MsG0180000245.01.T01 MTR_1g014640 32.917 240 137 9 65 299 108 328 1.48e-25 107
MsG0180000245.01.T01 MTR_1g013400 32.917 240 137 9 65 299 108 328 1.48e-25 107
MsG0180000245.01.T01 MTR_3g105730 30.962 239 141 8 65 298 43 262 6.56e-24 101
MsG0180000245.01.T01 MTR_3g105730 30.962 239 141 8 65 298 65 284 1.50e-23 100
MsG0180000245.01.T01 MTR_1g115570 34.615 234 131 10 66 297 127 340 3.04e-23 100
MsG0180000245.01.T01 MTR_2g078760 30.638 235 139 9 65 294 38 253 1.15e-22 97.1
MsG0180000245.01.T01 MTR_2g078760 30.638 235 139 9 65 294 117 332 2.81e-22 97.8
MsG0180000245.01.T01 MTR_3g464650 27.426 237 151 8 64 294 93 314 2.46e-21 94.7
MsG0180000245.01.T01 MTR_3g464700 30.198 202 124 7 59 259 112 297 1.44e-20 92.8
MsG0180000245.01.T01 MTR_3g091060 32.389 247 144 8 65 307 125 352 1.98e-20 92.8
MsG0180000245.01.T01 MTR_8g463130 32.766 235 130 12 65 292 38 251 3.33e-20 90.1
MsG0180000245.01.T01 MTR_8g463130 32.766 235 130 12 65 292 66 279 3.90e-20 90.5
MsG0180000245.01.T01 MTR_2g008850 29.185 233 141 9 65 292 19 232 8.87e-20 88.6
MsG0180000245.01.T01 MTR_5g071550 28.279 244 150 10 59 294 148 374 3.41e-19 89.4
MsG0180000245.01.T01 MTR_4g116420 30.534 262 135 10 64 304 123 358 6.53e-19 88.6
MsG0180000245.01.T01 MTR_2g008850 29.185 233 141 9 65 292 65 278 1.01e-18 86.3
MsG0180000245.01.T01 MTR_4g125810 28.244 262 143 8 66 294 254 503 1.11e-18 89.0
MsG0180000245.01.T01 MTR_1g015110 30.292 274 135 11 66 299 291 548 1.37e-17 85.5
MsG0180000245.01.T01 MTR_3g074610 27.778 234 143 8 65 292 66 279 3.51e-17 82.0
MsG0180000245.01.T01 MTR_5g024340 26.119 268 158 9 61 311 120 364 3.59e-17 83.2
MsG0180000245.01.T01 MTR_1g086350 28.261 276 159 12 55 308 6 264 4.11e-17 82.0
MsG0180000245.01.T01 MTR_1g050520 29.268 246 141 7 66 296 419 646 4.13e-17 84.3
MsG0180000245.01.T01 MTR_4g123080 28.996 269 155 10 64 313 94 345 4.31e-17 82.8
MsG0180000245.01.T01 MTR_5g071550 30.570 193 117 7 59 250 148 324 4.88e-17 82.8
MsG0180000245.01.T01 MTR_1g086350 28.523 298 169 14 37 308 87 366 5.00e-17 82.8
MsG0180000245.01.T01 MTR_4g094208 28.205 234 142 9 65 292 61 274 5.32e-17 81.3
MsG0180000245.01.T01 MTR_1g086350 28.523 298 169 14 37 308 71 350 5.58e-17 82.8
MsG0180000245.01.T01 MTR_5g063940 28.326 233 143 8 65 292 19 232 6.22e-17 80.1
MsG0180000245.01.T01 MTR_4g123080 28.996 269 155 10 64 313 112 363 8.43e-17 82.0
MsG0180000245.01.T01 MTR_5g063940 28.326 233 143 8 65 292 66 279 1.42e-16 80.1
MsG0180000245.01.T01 MTR_4g094542 30.417 240 136 11 61 292 146 362 2.17e-16 80.9
MsG0180000245.01.T01 MTR_1g028300 29.555 247 143 8 66 294 146 379 3.53e-16 80.5
MsG0180000245.01.T01 MTR_3g104710 28.058 278 144 9 62 299 283 544 1.25e-15 79.3
MsG0180000245.01.T01 MTR_6g081850 27.843 255 138 10 66 292 80 316 2.35e-15 77.0
MsG0180000245.01.T01 MTR_2g435550 30.325 277 143 16 67 301 94 362 1.03e-13 72.8
MsG0180000245.01.T01 MTR_2g435550 30.686 277 142 17 67 301 80 348 1.06e-13 72.4
MsG0180000245.01.T01 MTR_8g102550 25.483 259 160 9 66 302 153 400 2.54e-13 71.6
MsG0180000245.01.T01 MTR_2g040500 27.368 285 144 9 66 299 268 540 2.72e-13 72.0
MsG0180000245.01.T01 MTR_2g435550 31.276 243 125 14 67 275 94 328 3.98e-13 70.9
MsG0180000245.01.T01 MTR_4g007440 34.839 155 72 6 120 263 153 289 6.16e-13 70.5
MsG0180000245.01.T01 MTR_1g014190 28.516 256 112 12 62 262 49 288 1.23e-12 69.3
MsG0180000245.01.T01 MTR_4g120410 32.124 193 105 11 127 299 173 359 1.26e-12 69.3
MsG0180000245.01.T01 MTR_1g014190 28.125 256 113 11 62 262 87 326 1.58e-12 69.3
MsG0180000245.01.T01 MTR_3g105880 34.437 151 70 6 120 259 153 285 2.14e-12 68.6
MsG0180000245.01.T01 MTR_3g105880 34.437 151 70 6 120 259 153 285 4.21e-12 67.4
MsG0180000245.01.T01 MTR_2g033000 29.032 248 140 11 64 292 99 329 1.36e-11 66.2
MsG0180000245.01.T01 MTR_2g020970 28.674 279 152 13 52 294 74 341 3.39e-11 65.1
MsG0180000245.01.T01 MTR_7g112490 32.727 165 94 7 128 280 200 359 7.13e-11 64.3
MsG0180000245.01.T01 MTR_7g112490 32.727 165 94 7 128 280 182 341 9.85e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000245.01.T01 AT1G47380 76.960 421 96 1 1 421 1 420 0.0 695
MsG0180000245.01.T01 AT1G68410 56.941 425 177 2 4 422 9 433 3.32e-180 510
MsG0180000245.01.T01 AT1G68410 56.941 425 177 2 4 422 9 433 3.32e-180 510
MsG0180000245.01.T01 AT1G68410 56.941 425 177 2 4 422 9 433 3.32e-180 510
MsG0180000245.01.T01 AT1G68410 56.941 425 177 2 4 422 9 433 3.32e-180 510
MsG0180000245.01.T01 AT1G09160 57.971 414 169 3 7 418 10 420 7.07e-169 481
MsG0180000245.01.T01 AT1G09160 57.971 414 169 3 7 418 10 420 7.07e-169 481
MsG0180000245.01.T01 AT5G53140 32.759 232 134 6 65 292 132 345 4.01e-25 107
MsG0180000245.01.T01 AT5G53140 32.759 232 134 6 65 292 132 345 4.01e-25 107
MsG0180000245.01.T01 AT1G43900 35.043 234 127 10 64 292 153 366 8.59e-25 105
MsG0180000245.01.T01 AT2G34740 28.782 271 162 11 30 295 91 335 1.69e-23 101
MsG0180000245.01.T01 AT4G31750 30.544 239 142 9 65 298 64 283 1.83e-22 97.8
MsG0180000245.01.T01 AT4G31750 30.544 239 142 9 65 298 64 283 2.10e-22 97.8
MsG0180000245.01.T01 AT4G31750 30.544 239 142 9 65 298 64 283 2.10e-22 97.8
MsG0180000245.01.T01 AT2G40180 29.218 243 155 6 58 294 154 385 5.46e-22 97.8
MsG0180000245.01.T01 AT1G78200 30.342 234 140 8 65 292 19 235 5.75e-22 94.7
MsG0180000245.01.T01 AT1G78200 30.342 234 140 8 65 292 19 235 5.75e-22 94.7
MsG0180000245.01.T01 AT1G22280 28.270 237 152 7 61 292 61 284 7.51e-22 95.5
MsG0180000245.01.T01 AT1G07160 31.683 202 119 6 64 262 152 337 1.18e-21 96.7
MsG0180000245.01.T01 AT5G10740 30.508 236 140 8 65 295 64 280 1.35e-21 96.3
MsG0180000245.01.T01 AT5G10740 30.508 236 140 8 65 295 64 280 1.35e-21 96.3
MsG0180000245.01.T01 AT1G78200 30.342 234 140 8 65 292 64 280 2.47e-21 94.0
MsG0180000245.01.T01 AT1G78200 30.342 234 140 8 65 292 64 280 2.47e-21 94.0
MsG0180000245.01.T01 AT1G78200 30.342 234 140 8 65 292 64 280 2.47e-21 94.0
MsG0180000245.01.T01 AT5G24940 30.085 236 141 8 65 295 64 280 3.81e-21 95.9
MsG0180000245.01.T01 AT1G22280 28.692 237 145 7 61 292 61 278 5.89e-21 92.8
MsG0180000245.01.T01 AT1G67820 32.273 220 135 5 64 283 114 319 1.98e-20 93.6
MsG0180000245.01.T01 AT1G67820 32.273 220 135 5 64 283 150 355 2.13e-20 93.6
MsG0180000245.01.T01 AT5G57050 30.798 263 136 9 66 294 121 371 2.50e-20 92.8
MsG0180000245.01.T01 AT4G26080 29.588 267 143 8 66 299 173 427 3.58e-20 92.8
MsG0180000245.01.T01 AT5G57050 30.798 263 136 9 66 294 161 411 3.85e-20 92.8
MsG0180000245.01.T01 AT2G20630 28.731 268 160 12 30 292 35 276 5.40e-20 90.1
MsG0180000245.01.T01 AT4G28400 27.941 272 163 11 30 292 11 258 7.80e-20 89.4
MsG0180000245.01.T01 AT4G28400 27.941 272 163 11 30 292 33 280 1.59e-19 89.0
MsG0180000245.01.T01 AT3G51470 28.782 271 151 11 59 311 56 302 1.75e-19 89.4
MsG0180000245.01.T01 AT2G25620 30.451 266 136 10 64 305 127 367 2.03e-19 90.1
MsG0180000245.01.T01 AT2G25620 30.451 266 136 10 64 305 127 367 2.03e-19 90.1
MsG0180000245.01.T01 AT2G20630 28.102 274 166 11 30 298 35 282 2.03e-19 88.6
MsG0180000245.01.T01 AT1G34750 29.185 233 141 7 65 292 66 279 2.13e-19 88.6
MsG0180000245.01.T01 AT1G34750 29.185 233 141 7 65 292 66 279 2.13e-19 88.6
MsG0180000245.01.T01 AT1G34750 29.185 233 141 7 65 292 66 279 2.13e-19 88.6
MsG0180000245.01.T01 AT3G51470 28.782 271 151 11 59 311 100 346 4.01e-19 89.0
MsG0180000245.01.T01 AT2G30020 29.796 245 147 11 59 294 164 392 1.76e-18 87.4
MsG0180000245.01.T01 AT2G40860 31.174 247 136 7 65 296 423 650 2.71e-17 85.1
MsG0180000245.01.T01 AT2G40860 31.174 247 136 7 65 296 325 552 3.41e-17 84.3
MsG0180000245.01.T01 AT2G33700 30.116 259 135 12 64 304 122 352 6.59e-17 82.4
MsG0180000245.01.T01 AT1G48040 30.072 276 155 10 59 312 106 365 2.65e-16 80.9
MsG0180000245.01.T01 AT3G62260 29.044 272 145 12 64 309 26 275 7.36e-16 78.2
MsG0180000245.01.T01 AT4G27800 25.338 296 170 8 58 312 81 366 2.95e-15 77.8
MsG0180000245.01.T01 AT2G40860 30.435 230 118 6 65 270 423 634 3.33e-15 78.6
MsG0180000245.01.T01 AT3G62260 29.044 272 145 12 64 309 116 365 4.57e-15 77.0
MsG0180000245.01.T01 AT3G62260 29.044 272 145 12 64 309 115 364 4.71e-15 77.0
MsG0180000245.01.T01 AT5G27930 34.356 163 93 6 128 280 176 334 7.11e-14 73.2
MsG0180000245.01.T01 AT5G27930 34.356 163 93 6 128 280 176 334 7.11e-14 73.2
MsG0180000245.01.T01 AT4G27800 25.856 263 148 7 58 283 81 333 1.60e-13 72.0
MsG0180000245.01.T01 AT3G11410 29.060 234 121 9 62 266 134 351 3.34e-13 71.2
MsG0180000245.01.T01 AT3G15260 27.039 233 146 7 65 292 73 286 4.33e-13 70.1
MsG0180000245.01.T01 AT3G15260 27.039 233 146 7 65 292 73 286 4.33e-13 70.1
MsG0180000245.01.T01 AT4G27800 26.446 242 131 7 58 262 81 312 5.08e-13 70.1
MsG0180000245.01.T01 AT1G17550 25.952 289 147 10 62 299 234 506 1.31e-12 70.1
MsG0180000245.01.T01 AT1G17550 25.952 289 147 10 62 299 234 506 1.31e-12 70.1
MsG0180000245.01.T01 AT4G28400 26.754 228 136 9 30 249 33 237 8.94e-12 65.5
MsG0180000245.01.T01 AT4G32950 27.835 291 176 11 36 306 49 325 1.30e-11 65.9
MsG0180000245.01.T01 AT5G26010 29.545 220 127 11 57 255 65 277 5.41e-11 64.3
MsG0180000245.01.T01 AT1G18030 28.972 214 113 8 59 250 103 299 6.65e-11 63.5
MsG0180000245.01.T01 AT2G40860 31.088 193 102 5 65 244 423 597 7.13e-11 64.7

Find 156 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATCATCACAGGGCTTTA+TGG 0.131676 1:+3340330 MsG0180000245.01.T01:three_prime_UTR
GTCTATACATATTCTGTTTA+TGG 0.146524 1:+3335751 MsG0180000245.01.T01:CDS
AGGGCTTTATGGATCTAATT+TGG 0.182569 1:+3340341 MsG0180000245.01.T01:three_prime_UTR
TGGGATCAGTTCATTGTATA+TGG 0.214836 1:+3340531 MsG0180000245.01.T01:three_prime_UTR
TGGAAGACCACTTTCATTAA+AGG 0.258550 1:-3340580 None:intergenic
CCATGGCTTCTTTCTTCTCC+TGG 0.273356 1:-3340081 None:intergenic
TGCTGCTGCTATTTATTCTA+AGG 0.285233 1:+3336380 MsG0180000245.01.T01:CDS
TTCATTGTATATGGGTCATT+TGG 0.286662 1:+3340540 MsG0180000245.01.T01:three_prime_UTR
CCACAATTGTAATGTGATAT+AGG 0.288037 1:+3340600 MsG0180000245.01.T01:three_prime_UTR
TTGCCTAGAGCTTTGGTTGC+TGG 0.297177 1:+3336471 MsG0180000245.01.T01:CDS
CCATCAAACGGTTCCTCTTT+CGG 0.298563 1:+3335594 MsG0180000245.01.T01:CDS
CATCAAAAGAAGCCAGTAAA+AGG 0.301310 1:+3339690 MsG0180000245.01.T01:CDS
TCCTTTGGCCATATGAAGAT+TGG 0.324850 1:+3340722 MsG0180000245.01.T01:three_prime_UTR
TCTATACATATTCTGTTTAT+GGG 0.326441 1:+3335752 MsG0180000245.01.T01:CDS
CACTTACGACATTATTTAGA+AGG 0.339322 1:-3336407 None:intergenic
GTCACCTTTGTGATTATAGA+AGG 0.340000 1:+3337946 MsG0180000245.01.T01:CDS
CACAATTGTAATGTGATATA+GGG 0.347759 1:+3340601 MsG0180000245.01.T01:three_prime_UTR
TTGTGTCTTTCACGGTCTAT+TGG 0.351135 1:+3338879 MsG0180000245.01.T01:CDS
TCTATTGGAGATATGGATAT+TGG 0.357187 1:+3338894 MsG0180000245.01.T01:CDS
TTCACGGTCTATTGGAGATA+TGG 0.367775 1:+3338887 MsG0180000245.01.T01:CDS
ACTCAACCTTTCACAAAACT+TGG 0.368682 1:-3340444 None:intergenic
GAGAAACCTGAGATTGTTCA+TGG 0.372409 1:+3335652 MsG0180000245.01.T01:CDS
ATTACTTGTCAGCAGATCAT+AGG 0.376944 1:+3338037 MsG0180000245.01.T01:CDS
TAAAGCCCTGTGATGATAGA+AGG 0.381239 1:-3340327 None:intergenic
TTATCTGCAGTGATGGTGTT+TGG 0.384391 1:+3339338 MsG0180000245.01.T01:CDS
ATCAAAATTGTTCATTCGAC+TGG 0.384763 1:+3340270 MsG0180000245.01.T01:three_prime_UTR
GAAATGAGAAGATGATGAAT+TGG 0.385984 1:-3334972 None:intergenic
AGCAGCGTTGCCTAGAGCTT+TGG 0.392801 1:+3336464 MsG0180000245.01.T01:CDS
CCGGTGGCTTGTGTCTTTCA+CGG 0.416465 1:+3338871 MsG0180000245.01.T01:CDS
GTCAGAGGATGGTTGGTGAT+GGG 0.426132 1:+3335728 MsG0180000245.01.T01:CDS
TTTCCTTTGCTTTAGTTGCC+AGG 0.429172 1:+3340063 MsG0180000245.01.T01:CDS
CCTTTGGCCATATGAAGATT+GGG 0.429793 1:+3340723 MsG0180000245.01.T01:three_prime_UTR
ATGGAAGGGAAAAGATCATT+AGG 0.430336 1:+3340100 MsG0180000245.01.T01:CDS
CACTCATCTCTGTTAAGATC+TGG 0.439890 1:-3336438 None:intergenic
TGTCAGAGGATGGTTGGTGA+TGG 0.440068 1:+3335727 MsG0180000245.01.T01:CDS
GAGGTTGGTCGTTTAAATAC+AGG 0.444696 1:+3338200 MsG0180000245.01.T01:CDS
ATATAGACCTTTAATGAAAG+TGG 0.445537 1:+3340573 MsG0180000245.01.T01:three_prime_UTR
TATCTGCAGTGATGGTGTTT+GGG 0.448206 1:+3339339 MsG0180000245.01.T01:CDS
ACGGTGTCGTTTAGATGATC+AGG 0.453644 1:-3335007 None:intergenic
CAGGTGGAATTTGAACTCTC+TGG 0.453646 1:+3335417 MsG0180000245.01.T01:five_prime_UTR
TACAGCTCCACTACCACATC+TGG 0.464766 1:-3339783 None:intergenic
AGGTTGGTCCTTTGAGATGT+TGG 0.465990 1:+3338847 MsG0180000245.01.T01:intron
TATAAGTGACAGTTCACAAC+AGG 0.466410 1:+3340467 MsG0180000245.01.T01:three_prime_UTR
GCTTGACCATGAACAATCTC+AGG 0.467857 1:-3335658 None:intergenic
CTCTTTCGGTTCTATTGAAG+CGG 0.469837 1:+3335608 MsG0180000245.01.T01:CDS
CCTTTGTGATTATAGAAGGA+TGG 0.472037 1:+3337950 MsG0180000245.01.T01:CDS
ATGTACTGAAATACCCTCTC+CGG 0.472811 1:-3339996 None:intergenic
GGGATCAGTTCATTGTATAT+GGG 0.479984 1:+3340532 MsG0180000245.01.T01:three_prime_UTR
CAATCAAGGGCCACTTCTGC+AGG 0.480526 1:-3339370 None:intergenic
CGCTTCAATAGAACCGAAAG+AGG 0.484359 1:-3335607 None:intergenic
AGTTCAAATTCCACCTGGAC+AGG 0.486036 1:-3335411 None:intergenic
TGTTGTCGATATATTACCTC+AGG 0.492152 1:+3339644 MsG0180000245.01.T01:CDS
CCGAAAGAGGAACCGTTTGA+TGG 0.492567 1:-3335594 None:intergenic
TGACAGTTCACAACAGGAAG+TGG 0.493355 1:+3340473 MsG0180000245.01.T01:three_prime_UTR
TAATATATCGACAACAATAC+AGG 0.495282 1:-3339637 None:intergenic
TACAAGACCCAATCTTCATA+TGG 0.497077 1:-3340730 None:intergenic
CAGGAAGCTTTACAAGCAAA+GGG 0.497674 1:+3339597 MsG0180000245.01.T01:intron
ATTCTAACATGGAAGTGTAA+TGG 0.498210 1:+3340414 MsG0180000245.01.T01:three_prime_UTR
CTTTGTGATTATAGAAGGAT+GGG 0.507466 1:+3337951 MsG0180000245.01.T01:CDS
GGATGCTTTACCTGCAGAAG+TGG 0.508685 1:+3339360 MsG0180000245.01.T01:CDS
AAAGAATAAATCATTCGAAA+AGG 0.510123 1:-3340679 None:intergenic
ACATGCCACGACAACAATCA+AGG 0.512860 1:-3339384 None:intergenic
GAAGAATATTTGCAAAACGC+TGG 0.512864 1:+3334919 MsG0180000245.01.T01:five_prime_UTR
ACTTCTAGCGGCGGTGAGGT+TGG 0.512986 1:+3338185 MsG0180000245.01.T01:CDS
TCAGGAAGCTTTACAAGCAA+AGG 0.513371 1:+3339596 MsG0180000245.01.T01:intron
GTTGTAACAGTTGCATCAGT+TGG 0.519119 1:+3337973 MsG0180000245.01.T01:CDS
TCAGAGGATGGTTGGTGATG+GGG 0.521504 1:+3335729 MsG0180000245.01.T01:CDS
CGGCTCGTTATCTGCAGTGA+TGG 0.525551 1:+3339331 MsG0180000245.01.T01:CDS
GCAAAGGAAAGGTCCATCCC+AGG 0.526286 1:-3340050 None:intergenic
TGGTTGGTATCGAGAATTTG+AGG 0.526879 1:+3335528 MsG0180000245.01.T01:five_prime_UTR
GAGATTGTTCATGGTCAAGC+TGG 0.527083 1:+3335661 MsG0180000245.01.T01:CDS
TCAATTCAGCTGTCTACCGC+TGG 0.528577 1:+3339304 MsG0180000245.01.T01:intron
CAAGCTGGACAAAGTAAGAA+AGG 0.531054 1:+3335676 MsG0180000245.01.T01:CDS
CAGTATAATTGATCTATGAA+TGG 0.531068 1:-3340639 None:intergenic
AAGAATATTTGCAAAACGCT+GGG 0.533463 1:+3334920 MsG0180000245.01.T01:five_prime_UTR
AGCTGTCTACCGCTGGAGGC+CGG 0.534654 1:+3339311 MsG0180000245.01.T01:intron
CTCAACCTTTCACAAAACTT+GGG 0.538386 1:-3340443 None:intergenic
TGACTCCCTTCTATCATCAC+AGG 0.538628 1:+3340321 MsG0180000245.01.T01:three_prime_UTR
AAAGAAGTGCGCATTGTCGT+TGG 0.538834 1:+3335495 MsG0180000245.01.T01:five_prime_UTR
CATGGAGCCAGATGTGGTAG+TGG 0.541537 1:+3339776 MsG0180000245.01.T01:CDS
TGAACTCTCTGGCTTGCTTG+AGG 0.545068 1:+3335428 MsG0180000245.01.T01:five_prime_UTR
AACTTGAACATGTTGCATAG+TGG 0.546946 1:-3339938 None:intergenic
CCTATATCACATTACAATTG+TGG 0.549510 1:-3340600 None:intergenic
TGATGTGGTACAGGAGCAGG+TGG 0.551757 1:-3339672 None:intergenic
GGAGTCATTGTTGCTACGCT+AGG 0.555697 1:-3340305 None:intergenic
CCAGGAGAAGAAAGAAGCCA+TGG 0.556410 1:+3340081 MsG0180000245.01.T01:CDS
AGAAGATTCTAGTACGCAGC+GGG 0.558740 1:-3338001 None:intergenic
CGTTGGTTGACTCTAGTGGT+TGG 0.560267 1:+3335512 MsG0180000245.01.T01:five_prime_UTR
TCTTTCGGTTCTATTGAAGC+GGG 0.561579 1:+3335609 MsG0180000245.01.T01:CDS
AATCCAGCAACCAAAGCTCT+AGG 0.565798 1:-3336474 None:intergenic
CCCAATCTTCATATGGCCAA+AGG 0.569712 1:-3340723 None:intergenic
TGTACTGAAATACCCTCTCC+GGG 0.570714 1:-3339995 None:intergenic
TACTAGAATCTTCTGAAGGA+GGG 0.573395 1:+3338010 MsG0180000245.01.T01:CDS
TCATAGATCAATTATACTGT+AGG 0.573875 1:+3340643 MsG0180000245.01.T01:three_prime_UTR
AACCTTTCACAAAACTTGGG+TGG 0.574447 1:-3340440 None:intergenic
GGTCCTTTGAGATGTTGGCC+CGG 0.574568 1:+3338852 MsG0180000245.01.T01:CDS
CGTGAAAGACACAAGCCACC+GGG 0.575222 1:-3338870 None:intergenic
TTATATTGACAAAGAATACA+TGG 0.576737 1:+3339758 MsG0180000245.01.T01:CDS
CCGTGAAAGACACAAGCCAC+CGG 0.577523 1:-3338871 None:intergenic
TTGTCGTTGGTTGACTCTAG+TGG 0.579170 1:+3335508 MsG0180000245.01.T01:five_prime_UTR
CAAAGGAAAGGTCCATCCCA+GGG 0.579850 1:-3340049 None:intergenic
CTATACATATTCTGTTTATG+GGG 0.580689 1:+3335753 MsG0180000245.01.T01:CDS
ACCATATGTAAAACAAGTGA+AGG 0.581674 1:+3338935 MsG0180000245.01.T01:CDS
AACAACAATAACAATAACAA+TGG 0.583245 1:+3334894 MsG0180000245.01.T01:five_prime_UTR
TGTGGTAGTGGAGCTGTATG+AGG 0.585486 1:+3339788 MsG0180000245.01.T01:CDS
GAAGATGGACAGAAATGAAG+AGG 0.586481 1:-3340138 None:intergenic
AGAAGAAAGAAGCCATGGAA+GGG 0.588485 1:+3340086 MsG0180000245.01.T01:CDS
AGAGGGTATTTCAGTACATG+AGG 0.592511 1:+3340000 MsG0180000245.01.T01:CDS
GAGAAGAAAGAAGCCATGGA+AGG 0.596474 1:+3340085 MsG0180000245.01.T01:CDS
GAGGAGTGAACACCATCAAA+CGG 0.597871 1:+3335582 MsG0180000245.01.T01:CDS
AAAGCCCTGTGATGATAGAA+GGG 0.602365 1:-3340326 None:intergenic
TGTTAAAGTCTGATTGTCAG+AGG 0.605972 1:+3335713 MsG0180000245.01.T01:CDS
GCCAGTAAAAGGAATGCTCA+AGG 0.606078 1:+3339701 MsG0180000245.01.T01:CDS
GTGGCCCTTGATTGTTGTCG+TGG 0.610123 1:+3339379 MsG0180000245.01.T01:CDS
TCATCTCTGTTAAGATCTGG+AGG 0.610319 1:-3336435 None:intergenic
ATTCAGCTGTCTACCGCTGG+AGG 0.611201 1:+3339307 MsG0180000245.01.T01:intron
CAGCTATTTGATGGACACAA+TGG 0.613548 1:+3336354 MsG0180000245.01.T01:intron
GTCATTGTTGCTACGCTAGG+AGG 0.614806 1:-3340302 None:intergenic
CAGAAGATTCTAGTACGCAG+CGG 0.615294 1:-3338002 None:intergenic
TCTCCTGGCAACTAAAGCAA+AGG 0.615423 1:-3340066 None:intergenic
GTAGAAATAAAACCCGGAGA+GGG 0.616226 1:+3339983 MsG0180000245.01.T01:CDS
TATCACTTCTAGCGGCGGTG+AGG 0.618968 1:+3338181 MsG0180000245.01.T01:CDS
AAAGTCTGATTGTCAGAGGA+TGG 0.619234 1:+3335717 MsG0180000245.01.T01:CDS
TCTGATTGTCAGAGGATGGT+TGG 0.621776 1:+3335721 MsG0180000245.01.T01:CDS
AGGTTGGTCGTTTAAATACA+GGG 0.623903 1:+3338201 MsG0180000245.01.T01:CDS
GACAGTTCACAACAGGAAGT+GGG 0.625052 1:+3340474 MsG0180000245.01.T01:three_prime_UTR
CAGAGAGTTCAAATTCCACC+TGG 0.625506 1:-3335416 None:intergenic
GATAACGAGCCGGCCTCCAG+CGG 0.626646 1:-3339320 None:intergenic
GTACTAGAATCTTCTGAAGG+AGG 0.627636 1:+3338009 MsG0180000245.01.T01:CDS
TGGCAACTAAAGCAAAGGAA+AGG 0.629817 1:-3340061 None:intergenic
TGCGTACTAGAATCTTCTGA+AGG 0.633378 1:+3338006 MsG0180000245.01.T01:CDS
CATGCCACGACAACAATCAA+GGG 0.635389 1:-3339383 None:intergenic
CCACCGGGCCAACATCTCAA+AGG 0.638238 1:-3338855 None:intergenic
TGTCAAGTAGAAATAAAACC+CGG 0.639616 1:+3339977 MsG0180000245.01.T01:CDS
AGAATACATGGAGCCAGATG+TGG 0.640882 1:+3339770 MsG0180000245.01.T01:CDS
TGGACAAAGTAAGAAAGGAG+AGG 0.644392 1:+3335681 MsG0180000245.01.T01:CDS
CCTTTGAGATGTTGGCCCGG+TGG 0.645181 1:+3338855 MsG0180000245.01.T01:CDS
GGAGCAGGTGGCTTCTCCTG+AGG 0.645509 1:-3339660 None:intergenic
CATCACTGCAGATAACGAGC+CGG 0.646831 1:-3339330 None:intergenic
AGTAGAAATAAAACCCGGAG+AGG 0.647411 1:+3339982 MsG0180000245.01.T01:CDS
CCATCCTTCTATAATCACAA+AGG 0.652760 1:-3337950 None:intergenic
GACTCCCTTCTATCATCACA+GGG 0.657826 1:+3340322 MsG0180000245.01.T01:three_prime_UTR
TTGTCGTGGCATGTCAGCAG+AGG 0.661195 1:+3339393 MsG0180000245.01.T01:CDS
CTGACAATCAGACTTTAACA+AGG 0.663137 1:-3335710 None:intergenic
AGGGTTCGTATCACTTCTAG+CGG 0.670269 1:+3338173 MsG0180000245.01.T01:CDS
GTAGTGGAGCTGTATGAGGA+AGG 0.670367 1:+3339792 MsG0180000245.01.T01:CDS
GAGGGTATTTCAGTACATGA+GGG 0.676102 1:+3340001 MsG0180000245.01.T01:CDS
GTTGGTCGTTTAAATACAGG+GGG 0.676730 1:+3338203 MsG0180000245.01.T01:CDS
GTTCGTATCACTTCTAGCGG+CGG 0.677465 1:+3338176 MsG0180000245.01.T01:CDS
GGTTGGTCGTTTAAATACAG+GGG 0.683229 1:+3338202 MsG0180000245.01.T01:CDS
CAGATCTTAACAGAGATGAG+TGG 0.687097 1:+3336439 MsG0180000245.01.T01:CDS
AAAGGAAAGGTCCATCCCAG+GGG 0.692540 1:-3340048 None:intergenic
GGGAAAGAACAATGTCTGTG+AGG 0.706298 1:+3335563 MsG0180000245.01.T01:exon
ATCGTGATAGCATATAACTG+CGG 0.706352 1:+3335465 MsG0180000245.01.T01:five_prime_UTR
ATTTCAGATAGACTTAGCAG+CGG 0.708774 1:+3340204 MsG0180000245.01.T01:intron
GCTCTGCTATGCTTTCAGAG+AGG 0.715140 1:+3339814 MsG0180000245.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAGATGTTAAATAATA+GGG + Chr1:3336687-3336706 MsG0180000245.01.T01:intron 10.0%
!! ATCATCATTATTATTAATAA+CGG + Chr1:3335368-3335387 MsG0180000245.01.T01:intron 10.0%
!! TAATATAGATGTTAAATAAT+AGG + Chr1:3336686-3336705 MsG0180000245.01.T01:intron 10.0%
!!! ATTTTTATTTTTAATGAGTA+TGG + Chr1:3336849-3336868 MsG0180000245.01.T01:intron 10.0%
!! ACTATACTGTTAATATTATA+TGG - Chr1:3338484-3338503 None:intergenic 15.0%
!! ATATAGATGTTAAATAATAG+GGG + Chr1:3336688-3336707 MsG0180000245.01.T01:intron 15.0%
!! TATATATAACCATATTTGTT+AGG + Chr1:3336927-3336946 MsG0180000245.01.T01:intron 15.0%
!! TTATACAAATAATTAACAGA+CGG - Chr1:3336567-3336586 None:intergenic 15.0%
!!! AAAAATATTCACAAATGTTT+TGG - Chr1:3336635-3336654 None:intergenic 15.0%
!!! ATTATTACCATTCTATTTTA+TGG + Chr1:3336009-3336028 MsG0180000245.01.T01:intron 15.0%
!!! TGTAGATCATTTTTTATTTT+TGG + Chr1:3338086-3338105 MsG0180000245.01.T01:intron 15.0%
!!! TTGTGTTTTTAAATAGAATA+AGG + Chr1:3337578-3337597 MsG0180000245.01.T01:intron 15.0%
!!! TTTTACATATTTCTTTTTCT+GGG + Chr1:3340512-3340531 MsG0180000245.01.T01:three_prime_UTR 15.0%
!!! TTTTTACATATTTCTTTTTC+TGG + Chr1:3340511-3340530 MsG0180000245.01.T01:three_prime_UTR 15.0%
!! AAACAAAACCATAACAATTA+GGG - Chr1:3336205-3336224 None:intergenic 20.0%
!! AAAGAATAAATCATTCGAAA+AGG - Chr1:3340682-3340701 None:intergenic 20.0%
!! AAATACAAAAGATTATACCA+AGG - Chr1:3336754-3336773 None:intergenic 20.0%
!! AACAACAATAACAATAACAA+TGG + Chr1:3334894-3334913 MsG0180000245.01.T01:five_prime_UTR 20.0%
!! ACAAAATCACTAATTGAATA+TGG - Chr1:3335791-3335810 None:intergenic 20.0%
!! CAAAAATATACGAGTTAAAA+AGG - Chr1:3338261-3338280 None:intergenic 20.0%
!! CATTACTGTTATTACAAAAA+AGG - Chr1:3340778-3340797 None:intergenic 20.0%
!! GTTAATATTACTGATATAAC+TGG + Chr1:3338801-3338820 MsG0180000245.01.T01:intron 20.0%
!! TAAACAAAACCATAACAATT+AGG - Chr1:3336206-3336225 None:intergenic 20.0%
!! TCTATACATATTCTGTTTAT+GGG + Chr1:3335752-3335771 MsG0180000245.01.T01:CDS 20.0%
!! TGTGATAGATCTTAATAATT+TGG - Chr1:3337824-3337843 None:intergenic 20.0%
!! TTAATTACATGATTACTGTT+TGG + Chr1:3335966-3335985 MsG0180000245.01.T01:intron 20.0%
!! TTATATTGACAAAGAATACA+TGG + Chr1:3339758-3339777 MsG0180000245.01.T01:CDS 20.0%
!! TTGTAAATGATAATAGATGA+GGG + Chr1:3336877-3336896 MsG0180000245.01.T01:intron 20.0%
!! TTGTTAGAAAAATTCTAACA+TGG + Chr1:3340403-3340422 MsG0180000245.01.T01:three_prime_UTR 20.0%
!!! CATTTTATGATTTGTTTTGT+GGG + Chr1:3339465-3339484 MsG0180000245.01.T01:intron 20.0%
!!! TATTTTTAATGAGTATGGTT+AGG + Chr1:3336854-3336873 MsG0180000245.01.T01:intron 20.0%
!!! TCATTTTATGATTTGTTTTG+TGG + Chr1:3339464-3339483 MsG0180000245.01.T01:intron 20.0%
!!! TGTTTTTGTTCATTTTTTCA+TGG - Chr1:3335259-3335278 None:intergenic 20.0%
!!! TTTCATTATGTATTTTCATG+AGG - Chr1:3340371-3340390 None:intergenic 20.0%
!!! TTTTGGTAATATTACCATTA+AGG - Chr1:3336618-3336637 None:intergenic 20.0%
! AAACAAATGTTAGTATTGTG+TGG - Chr1:3337269-3337288 None:intergenic 25.0%
! AAATCTTAAAAATTCCTGTC+AGG + Chr1:3337120-3337139 MsG0180000245.01.T01:intron 25.0%
! AACAAATGTTAGTATTGTGT+GGG - Chr1:3337268-3337287 None:intergenic 25.0%
! AATAAGGATATCTCATGTAA+AGG + Chr1:3337594-3337613 MsG0180000245.01.T01:intron 25.0%
! ACTGTTAATATTATATGGAC+TGG - Chr1:3338479-3338498 None:intergenic 25.0%
! ATATAGACCTTTAATGAAAG+TGG + Chr1:3340573-3340592 MsG0180000245.01.T01:three_prime_UTR 25.0%
! ATCAAATGATTGAATTCTTG+AGG + Chr1:3339206-3339225 MsG0180000245.01.T01:intron 25.0%
! CACAATTGTAATGTGATATA+GGG + Chr1:3340601-3340620 MsG0180000245.01.T01:three_prime_UTR 25.0%
! CAGTATAATTGATCTATGAA+TGG - Chr1:3340642-3340661 None:intergenic 25.0%
! CTAACATTTGTTTACTCATA+TGG + Chr1:3337276-3337295 MsG0180000245.01.T01:intron 25.0%
! CTATACATATTCTGTTTATG+GGG + Chr1:3335753-3335772 MsG0180000245.01.T01:CDS 25.0%
! GTCTATACATATTCTGTTTA+TGG + Chr1:3335751-3335770 MsG0180000245.01.T01:CDS 25.0%
! GTTGTAAATGATAATAGATG+AGG + Chr1:3336876-3336895 MsG0180000245.01.T01:intron 25.0%
! TAAATCATGTGCTAACTATA+CGG - Chr1:3337303-3337322 None:intergenic 25.0%
! TAATATATCGACAACAATAC+AGG - Chr1:3339640-3339659 None:intergenic 25.0%
! TCAAATGATTGAATTCTTGA+GGG + Chr1:3339207-3339226 MsG0180000245.01.T01:intron 25.0%
! TCATAGATCAATTATACTGT+AGG + Chr1:3340643-3340662 MsG0180000245.01.T01:three_prime_UTR 25.0%
! TTAAATAATAGGGGAAGAAA+AGG + Chr1:3336697-3336716 MsG0180000245.01.T01:intron 25.0%
! TTCTCTTGGTAAAATACATA+GGG - Chr1:3338589-3338608 None:intergenic 25.0%
! TTTCTCTTGGTAAAATACAT+AGG - Chr1:3338590-3338609 None:intergenic 25.0%
! TTTGGAAAATTTATCTGAAC+TGG + Chr1:3335984-3336003 MsG0180000245.01.T01:intron 25.0%
!! AAACATTTTACAACCTTTCT+TGG + Chr1:3338522-3338541 MsG0180000245.01.T01:intron 25.0%
!! AATGCAAAAATCTTCTAAAG+AGG - Chr1:3338778-3338797 None:intergenic 25.0%
!! ATAACCATATTTGTTAGGAT+TGG + Chr1:3336932-3336951 MsG0180000245.01.T01:intron 25.0%
!! ATGCAAAAATCTTCTAAAGA+GGG - Chr1:3338777-3338796 None:intergenic 25.0%
!! ATTTTACCAAGAGAAATACT+AGG + Chr1:3338594-3338613 MsG0180000245.01.T01:intron 25.0%
!! GTTTAGAATCTTTAGATGAT+AGG + Chr1:3338553-3338572 MsG0180000245.01.T01:intron 25.0%
!! TAACCATATTTGTTAGGATT+GGG + Chr1:3336933-3336952 MsG0180000245.01.T01:intron 25.0%
!! TTAACACTCACTCTTTTATT+GGG + Chr1:3338625-3338644 MsG0180000245.01.T01:intron 25.0%
!! TTTAACACTCACTCTTTTAT+TGG + Chr1:3338624-3338643 MsG0180000245.01.T01:intron 25.0%
!! TTTTACTTACAGCTATTTGA+TGG + Chr1:3336345-3336364 MsG0180000245.01.T01:intron 25.0%
!!! AATTTGAGGATTTTTTAGGA+GGG + Chr1:3335542-3335561 MsG0180000245.01.T01:five_prime_UTR 25.0%
!!! ACCAAAAATTAAAGTATTGC+TGG - Chr1:3338362-3338381 None:intergenic 25.0%
!!! ATTAGTGATTTTGTTATTGC+AGG + Chr1:3335797-3335816 MsG0180000245.01.T01:intron 25.0%
!!! TCCAGCAATACTTTAATTTT+TGG + Chr1:3338358-3338377 MsG0180000245.01.T01:intron 25.0%
!!! TCTGATTTTGATAATTCCTT+TGG + Chr1:3340707-3340726 MsG0180000245.01.T01:three_prime_UTR 25.0%
!!! TGACATATTAGAGTATTGTA+TGG + Chr1:3337459-3337478 MsG0180000245.01.T01:intron 25.0%
!!! TTTGTTTTGTTTCGTTATTC+AGG + Chr1:3335337-3335356 MsG0180000245.01.T01:intron 25.0%
!!! TTTTATTTTGATCTATCACC+CGG + Chr1:3336651-3336670 MsG0180000245.01.T01:intron 25.0%
!!! TTTTGTTCATTTTTTCATGG+AGG - Chr1:3335256-3335275 None:intergenic 25.0%
AAATGAAAAGACCAAGATAG+TGG - Chr1:3340188-3340207 None:intergenic 30.0%
AAGAATATTTGCAAAACGCT+GGG + Chr1:3334920-3334939 MsG0180000245.01.T01:five_prime_UTR 30.0%
ACAATGTTTCAGAAACTTTG+AGG + Chr1:3339183-3339202 MsG0180000245.01.T01:intron 30.0%
ACATATACTTGTCTAATAGG+CGG - Chr1:3337512-3337531 None:intergenic 30.0%
ACCATATGTAAAACAAGTGA+AGG + Chr1:3338935-3338954 MsG0180000245.01.T01:CDS 30.0%
AGAATATTATTGAATGCCTG+CGG - Chr1:3337766-3337785 None:intergenic 30.0%
AGAGATTTGAAAATGGAGAA+TGG - Chr1:3335067-3335086 None:intergenic 30.0%
AGCAAATTAATCTGCATCAA+TGG + Chr1:3336589-3336608 MsG0180000245.01.T01:intron 30.0%
AGTCAAGCCATAAAATAGAA+TGG - Chr1:3336019-3336038 None:intergenic 30.0%
AGTCATGGAAGTTATTAAGA+TGG + Chr1:3337850-3337869 MsG0180000245.01.T01:intron 30.0%
ATAGATTCATTGACGATACA+CGG + Chr1:3336126-3336145 MsG0180000245.01.T01:intron 30.0%
ATCAAAATTGTTCATTCGAC+TGG + Chr1:3340270-3340289 MsG0180000245.01.T01:three_prime_UTR 30.0%
ATCATAGTGGTATGAAACTA+TGG + Chr1:3339530-3339549 MsG0180000245.01.T01:intron 30.0%
ATTTGGCAAGTAACTAGATA+TGG - Chr1:3337807-3337826 None:intergenic 30.0%
CAAAATATAGAGAAAGCGAT+TGG - Chr1:3335210-3335229 None:intergenic 30.0%
CAAATGATTGAATTCTTGAG+GGG + Chr1:3339208-3339227 MsG0180000245.01.T01:intron 30.0%
CACTTACGACATTATTTAGA+AGG - Chr1:3336410-3336429 None:intergenic 30.0%
CATAATCTAATCCACTATCT+TGG + Chr1:3340174-3340193 MsG0180000245.01.T01:intron 30.0%
CATGTTTCGTAAAAAGTCTT+CGG + Chr1:3339725-3339744 MsG0180000245.01.T01:CDS 30.0%
CCACAATTGTAATGTGATAT+AGG + Chr1:3340600-3340619 MsG0180000245.01.T01:three_prime_UTR 30.0%
CCTATATCACATTACAATTG+TGG - Chr1:3340603-3340622 None:intergenic 30.0%
CCTGATGAAAATGAAAAAGA+GGG - Chr1:3338153-3338172 None:intergenic 30.0%
CTAATACTCAGTCTCTTATT+GGG - Chr1:3338719-3338738 None:intergenic 30.0%
CTATTAGACAAGTATATGTC+AGG + Chr1:3337513-3337532 MsG0180000245.01.T01:intron 30.0%
CTGACATATACTTGTCTAAT+AGG - Chr1:3337515-3337534 None:intergenic 30.0%
CTGATGAAAATGAAAAAGAG+GGG - Chr1:3338152-3338171 None:intergenic 30.0%
CTTTGTGATTATAGAAGGAT+GGG + Chr1:3337951-3337970 MsG0180000245.01.T01:CDS 30.0%
GAAATGAGAAGATGATGAAT+TGG - Chr1:3334975-3334994 None:intergenic 30.0%
GCATATGGAACTACTTATTT+GGG - Chr1:3337545-3337564 None:intergenic 30.0%
TAAACAAGAGTTTCCAAGAA+AGG - Chr1:3338538-3338557 None:intergenic 30.0%
TACAACTTTACAAGTACTCT+AGG - Chr1:3337669-3337688 None:intergenic 30.0%
TAGATTATGGACACATTTCA+AGG - Chr1:3340163-3340182 None:intergenic 30.0%
TCCTGATGAAAATGAAAAAG+AGG - Chr1:3338154-3338173 None:intergenic 30.0%
TCTAATACTCAGTCTCTTAT+TGG - Chr1:3338720-3338739 None:intergenic 30.0%
TCTATCACATTAACTAGTCA+TGG + Chr1:3337835-3337854 MsG0180000245.01.T01:intron 30.0%
TCTATTGGAGATATGGATAT+TGG + Chr1:3338894-3338913 MsG0180000245.01.T01:CDS 30.0%
TCTCTTGGTAAAATACATAG+GGG - Chr1:3338588-3338607 None:intergenic 30.0%
TCTGATTATGTGGTTTAACA+TGG - Chr1:3338397-3338416 None:intergenic 30.0%
TGCATATGGAACTACTTATT+TGG - Chr1:3337546-3337565 None:intergenic 30.0%
TGTCAAGTAGAAATAAAACC+CGG + Chr1:3339977-3339996 MsG0180000245.01.T01:CDS 30.0%
TTAAAAATTCCTGTCAGGTT+TGG + Chr1:3337125-3337144 MsG0180000245.01.T01:intron 30.0%
TTATTTGCACTCATCTTAGT+TGG + Chr1:3336223-3336242 MsG0180000245.01.T01:intron 30.0%
TTCATTGTATATGGGTCATT+TGG + Chr1:3340540-3340559 MsG0180000245.01.T01:three_prime_UTR 30.0%
! AAATCTTCTAAAGAGGGTAT+TGG - Chr1:3338771-3338790 None:intergenic 30.0%
! ATTCTAACATGGAAGTGTAA+TGG + Chr1:3340414-3340433 MsG0180000245.01.T01:three_prime_UTR 30.0%
! CTTCTCTATTTTGTCATTAC+AGG + Chr1:3337904-3337923 MsG0180000245.01.T01:intron 30.0%
! GATAAAGATTTTGCAGAGAA+AGG + Chr1:3336507-3336526 MsG0180000245.01.T01:CDS 30.0%
! TTTTTCTAACAAACTGCTGT+TGG - Chr1:3340395-3340414 None:intergenic 30.0%
!! ATATTTTTGTATGCCTGTGT+GGG - Chr1:3339084-3339103 None:intergenic 30.0%
!! ATGCTATTGATTTCATCTTG+TGG + Chr1:3336089-3336108 MsG0180000245.01.T01:intron 30.0%
!! CAAGATAGTGGATTAGATTA+TGG - Chr1:3340176-3340195 None:intergenic 30.0%
!! CTTTTTCATTTTCATCAGGA+GGG + Chr1:3338154-3338173 MsG0180000245.01.T01:intron 30.0%
!! TATATTTTTGTATGCCTGTG+TGG - Chr1:3339085-3339104 None:intergenic 30.0%
!! TATCTCACTTTTACAATCTG+TGG - Chr1:3339427-3339446 None:intergenic 30.0%
!! TCAAAGTTTCTGAAACATTG+TGG - Chr1:3339184-3339203 None:intergenic 30.0%
!! TCTTTTTCATTTTCATCAGG+AGG + Chr1:3338153-3338172 MsG0180000245.01.T01:intron 30.0%
!! TTAGCACATGATTTAAGTTG+TGG + Chr1:3337308-3337327 MsG0180000245.01.T01:intron 30.0%
!!! ACCTTCACTTGTTTTACATA+TGG - Chr1:3338939-3338958 None:intergenic 30.0%
!!! ACTTGTTTTACATATGGTAC+AGG - Chr1:3338933-3338952 None:intergenic 30.0%
!!! ATTTGAGGATTTTTTAGGAG+GGG + Chr1:3335543-3335562 MsG0180000245.01.T01:five_prime_UTR 30.0%
!!! CGAGAATTTGAGGATTTTTT+AGG + Chr1:3335538-3335557 MsG0180000245.01.T01:five_prime_UTR 30.0%
!!! CTTGTTTTACATATGGTACA+GGG - Chr1:3338932-3338951 None:intergenic 30.0%
!!! GAATTTGAGGATTTTTTAGG+AGG + Chr1:3335541-3335560 MsG0180000245.01.T01:five_prime_UTR 30.0%
!!! TTTATTTTGATCTATCACCC+GGG + Chr1:3336652-3336671 MsG0180000245.01.T01:intron 30.0%
AAAATGGAGAATGGAGAAAG+AGG - Chr1:3335058-3335077 None:intergenic 35.0%
AAATGCACACAAGGATTTCT+TGG - Chr1:3339255-3339274 None:intergenic 35.0%
AAATGTTAGTATTGTGTGGG+AGG - Chr1:3337265-3337284 None:intergenic 35.0%
AACACGCTAACAAATGCATA+TGG - Chr1:3337560-3337579 None:intergenic 35.0%
AACTTGAACATGTTGCATAG+TGG - Chr1:3339941-3339960 None:intergenic 35.0%
AATACAATGAACGACGTTGA+TGG - Chr1:3335183-3335202 None:intergenic 35.0%
ACTCAACCTTTCACAAAACT+TGG - Chr1:3340447-3340466 None:intergenic 35.0%
ACTCTTCATCTCTGATTATG+TGG - Chr1:3338407-3338426 None:intergenic 35.0%
AGGGAAAACACACAAAAACT+CGG - Chr1:3336302-3336321 None:intergenic 35.0%
AGTGTTCCTAGTATTTCTCT+TGG - Chr1:3338603-3338622 None:intergenic 35.0%
ATCGTGATAGCATATAACTG+CGG + Chr1:3335465-3335484 MsG0180000245.01.T01:five_prime_UTR 35.0%
ATGGAAGGGAAAAGATCATT+AGG + Chr1:3340100-3340119 MsG0180000245.01.T01:CDS 35.0%
ATTACTTGTCAGCAGATCAT+AGG + Chr1:3338037-3338056 MsG0180000245.01.T01:CDS 35.0%
ATTAGGTATCATTGCAAGGA+TGG + Chr1:3336063-3336082 MsG0180000245.01.T01:intron 35.0%
ATTTCAGATAGACTTAGCAG+CGG + Chr1:3340204-3340223 MsG0180000245.01.T01:intron 35.0%
CAATGCATTCAGTGCATAAA+TGG - Chr1:3336268-3336287 None:intergenic 35.0%
CACATGAGAAAATGAAACCA+GGG - Chr1:3336321-3336340 None:intergenic 35.0%
CATCAAAAGAAGCCAGTAAA+AGG + Chr1:3339690-3339709 MsG0180000245.01.T01:CDS 35.0%
CATTCAGAAAAATGCACACA+AGG - Chr1:3339264-3339283 None:intergenic 35.0%
CATTTGAATAATTGCACTGC+TGG + Chr1:3337731-3337750 MsG0180000245.01.T01:intron 35.0%
CCATCCTTCTATAATCACAA+AGG - Chr1:3337953-3337972 None:intergenic 35.0%
CCTTTGTGATTATAGAAGGA+TGG + Chr1:3337950-3337969 MsG0180000245.01.T01:CDS 35.0%
CGAGAGAAAAAAACGAGATT+AGG + Chr1:3336046-3336065 MsG0180000245.01.T01:intron 35.0%
CTCAACCTTTCACAAAACTT+GGG - Chr1:3340446-3340465 None:intergenic 35.0%
CTGACAATCAGACTTTAACA+AGG - Chr1:3335713-3335732 None:intergenic 35.0%
CTTCCAAAGATAAAGAGAAG+AGG + Chr1:3338310-3338329 MsG0180000245.01.T01:intron 35.0%
CTTCCTTGATTAAAGCTTGT+AGG + Chr1:3337169-3337188 MsG0180000245.01.T01:intron 35.0%
GAAAACGAAAGCGAGAAAAA+CGG - Chr1:3335155-3335174 None:intergenic 35.0%
GAACAGTTCCCTAATTGTTA+TGG + Chr1:3336194-3336213 MsG0180000245.01.T01:intron 35.0%
GAAGAATATTTGCAAAACGC+TGG + Chr1:3334919-3334938 MsG0180000245.01.T01:five_prime_UTR 35.0%
GAGAGAGAGAGATTTGAAAA+TGG - Chr1:3335074-3335093 None:intergenic 35.0%
GAGGAAGAAGAAGAAGAAAA+CGG - Chr1:3335029-3335048 None:intergenic 35.0%
GATCTAGTGTCAAATCTTCA+GGG - Chr1:3336784-3336803 None:intergenic 35.0%
GCAAGTAACTAGATATGGAA+TGG - Chr1:3337802-3337821 None:intergenic 35.0%
GGGATCAGTTCATTGTATAT+GGG + Chr1:3340532-3340551 MsG0180000245.01.T01:three_prime_UTR 35.0%
GGTTTAACATGGCAAACATT+GGG - Chr1:3338386-3338405 None:intergenic 35.0%
GTCAACTCAATCTTACACAT+AGG + Chr1:3338961-3338980 MsG0180000245.01.T01:intron 35.0%
GTCACCTTTGTGATTATAGA+AGG + Chr1:3337946-3337965 MsG0180000245.01.T01:CDS 35.0%
GTCATTACAGGACAAAAATC+AGG + Chr1:3337916-3337935 MsG0180000245.01.T01:intron 35.0%
TAAGTAACCTTGAGAGCAAA+CGG - Chr1:3339030-3339049 None:intergenic 35.0%
TACAAGACCCAATCTTCATA+TGG - Chr1:3340733-3340752 None:intergenic 35.0%
TACCACTATGATGTTGAAGT+CGG - Chr1:3339522-3339541 None:intergenic 35.0%
TATAAGTGACAGTTCACAAC+AGG + Chr1:3340467-3340486 MsG0180000245.01.T01:three_prime_UTR 35.0%
TCACTTCACTTAATGTCTTC+AGG + Chr1:3339578-3339597 MsG0180000245.01.T01:intron 35.0%
TGGAAGACCACTTTCATTAA+AGG - Chr1:3340583-3340602 None:intergenic 35.0%
TGGGATCAGTTCATTGTATA+TGG + Chr1:3340531-3340550 MsG0180000245.01.T01:three_prime_UTR 35.0%
TGGTTTAACATGGCAAACAT+TGG - Chr1:3338387-3338406 None:intergenic 35.0%
TGTCCTCTTCTCTTTATCTT+TGG - Chr1:3338316-3338335 None:intergenic 35.0%
TGTTAAAGTCTGATTGTCAG+AGG + Chr1:3335713-3335732 MsG0180000245.01.T01:CDS 35.0%
TGTTGTCGATATATTACCTC+AGG + Chr1:3339644-3339663 MsG0180000245.01.T01:CDS 35.0%
! AATGATCATTTTACCTGTCC+AGG + Chr1:3335398-3335417 MsG0180000245.01.T01:five_prime_UTR 35.0%
! ACTAGGTTAAGGATTTTTGC+AGG + Chr1:3338827-3338846 MsG0180000245.01.T01:intron 35.0%
! AGAATGCTCGTTTAAAATGC+AGG + Chr1:3339900-3339919 MsG0180000245.01.T01:intron 35.0%
! AGATTTTGCAGAGAAAGGTA+TGG + Chr1:3336512-3336531 MsG0180000245.01.T01:intron 35.0%
! AGGGCTTTATGGATCTAATT+TGG + Chr1:3340341-3340360 MsG0180000245.01.T01:three_prime_UTR 35.0%
! AGGTTGGTCGTTTAAATACA+GGG + Chr1:3338201-3338220 MsG0180000245.01.T01:CDS 35.0%
! ATATCTCATGTAAAGGCATG+TGG + Chr1:3337601-3337620 MsG0180000245.01.T01:intron 35.0%
! CGAAGACTTTTTACGAAACA+TGG - Chr1:3339727-3339746 None:intergenic 35.0%
! CTTTATCTTTGGAAGAGAGT+GGG - Chr1:3338305-3338324 None:intergenic 35.0%
! TAACAATGCGACATTGCTTT+TGG + Chr1:3337049-3337068 MsG0180000245.01.T01:intron 35.0%
! TAATGATCTTTTCCCTTCCA+TGG - Chr1:3340101-3340120 None:intergenic 35.0%
! TACTAGAATCTTCTGAAGGA+GGG + Chr1:3338010-3338029 MsG0180000245.01.T01:CDS 35.0%
! TCTTTATCTTTGGAAGAGAG+TGG - Chr1:3338306-3338325 None:intergenic 35.0%
! TGCTGCTGCTATTTATTCTA+AGG + Chr1:3336380-3336399 MsG0180000245.01.T01:CDS 35.0%
! TTTATCTTTGGAAGAGAGTG+GGG - Chr1:3338304-3338323 None:intergenic 35.0%
!! AAAAATGCCCTGCTTTGAAA+AGG - Chr1:3336907-3336926 None:intergenic 35.0%
!! AAGAGGGTATTGGTAAAATG+AGG - Chr1:3338761-3338780 None:intergenic 35.0%
!! CCCTCTTTTTCATTTTCATC+AGG + Chr1:3338150-3338169 MsG0180000245.01.T01:intron 35.0%
!! GAGTATTGTATGGTTGATGA+AGG + Chr1:3337469-3337488 MsG0180000245.01.T01:intron 35.0%
!! TCTTTGCCTATTTTAGACTC+TGG + Chr1:3336985-3337004 MsG0180000245.01.T01:intron 35.0%
!! TCTTTTGATTAATCCCACAC+AGG + Chr1:3339068-3339087 MsG0180000245.01.T01:intron 35.0%
!! TTTAAGTTGTGGACTACATC+AGG + Chr1:3337319-3337338 MsG0180000245.01.T01:intron 35.0%
!!! ATTTTTGGTGAGCAACTGTT+TGG + Chr1:3338101-3338120 MsG0180000245.01.T01:intron 35.0%
!!! GTTTTAAAATGTGGTTGCAG+TGG - Chr1:3337425-3337444 None:intergenic 35.0%
!!! TAGCACGTGGTTTTAAAATG+TGG - Chr1:3337434-3337453 None:intergenic 35.0%
!!! TGCTGTGTATTTTGAAACCT+TGG + Chr1:3336734-3336753 MsG0180000245.01.T01:intron 35.0%
!!! TTATTTTGATCTATCACCCG+GGG + Chr1:3336653-3336672 MsG0180000245.01.T01:intron 35.0%
!!! TTTACTGGCTTCTTTTGATG+TGG - Chr1:3339690-3339709 None:intergenic 35.0%
AAAGCCCTGTGATGATAGAA+GGG - Chr1:3340329-3340348 None:intergenic 40.0%
AAAGTCTGATTGTCAGAGGA+TGG + Chr1:3335717-3335736 MsG0180000245.01.T01:CDS 40.0%
AACCTTTCACAAAACTTGGG+TGG - Chr1:3340443-3340462 None:intergenic 40.0%
AAGTAACCTTGAGAGCAAAC+GGG - Chr1:3339029-3339048 None:intergenic 40.0%
ACTGATATAACTGGCTGACT+AGG + Chr1:3338810-3338829 MsG0180000245.01.T01:intron 40.0%
AGAAGAAAGAAGCCATGGAA+GGG + Chr1:3340086-3340105 MsG0180000245.01.T01:CDS 40.0%
AGTAGAAATAAAACCCGGAG+AGG + Chr1:3339982-3340001 MsG0180000245.01.T01:CDS 40.0%
ATAACTGGCTGACTAGGTTA+AGG + Chr1:3338816-3338835 MsG0180000245.01.T01:intron 40.0%
ATATGTCAACTACTAGCACG+TGG - Chr1:3337447-3337466 None:intergenic 40.0%
ATGTACTGAAATACCCTCTC+CGG - Chr1:3339999-3340018 None:intergenic 40.0%
ATTAAAGCTTGTAGGCACGT+AGG + Chr1:3337177-3337196 MsG0180000245.01.T01:intron 40.0%
CAAGCTGGACAAAGTAAGAA+AGG + Chr1:3335676-3335695 MsG0180000245.01.T01:CDS 40.0%
CAATGTCGCATTGTTAAAGC+TGG - Chr1:3337045-3337064 None:intergenic 40.0%
CACTCATCTCTGTTAAGATC+TGG - Chr1:3336441-3336460 None:intergenic 40.0%
CAGATCTTAACAGAGATGAG+TGG + Chr1:3336439-3336458 MsG0180000245.01.T01:CDS 40.0%
CAGGAAGCTTTACAAGCAAA+GGG + Chr1:3339597-3339616 MsG0180000245.01.T01:intron 40.0%
CCACATGAGAAAATGAAACC+AGG - Chr1:3336322-3336341 None:intergenic 40.0%
CCATACTGTGGTAAATTGAG+AGG + Chr1:3338435-3338454 MsG0180000245.01.T01:intron 40.0%
CCTCTCAATTTACCACAGTA+TGG - Chr1:3338438-3338457 None:intergenic 40.0%
CCTTTGGCCATATGAAGATT+GGG + Chr1:3340723-3340742 MsG0180000245.01.T01:three_prime_UTR 40.0%
CGAGATTAGGTATCATTGCA+AGG + Chr1:3336059-3336078 MsG0180000245.01.T01:intron 40.0%
CTCTTTCGGTTCTATTGAAG+CGG + Chr1:3335608-3335627 MsG0180000245.01.T01:CDS 40.0%
CTTACACATAGGACAGTGTT+TGG + Chr1:3338972-3338991 MsG0180000245.01.T01:intron 40.0%
GAAAGCGAGAAAAACGGTAA+TGG - Chr1:3335149-3335168 None:intergenic 40.0%
GAAATGGCTCCTACATAAAG+TGG - Chr1:3338669-3338688 None:intergenic 40.0%
GAAGATGGACAGAAATGAAG+AGG - Chr1:3340141-3340160 None:intergenic 40.0%
GAGAAACCTGAGATTGTTCA+TGG + Chr1:3335652-3335671 MsG0180000245.01.T01:CDS 40.0%
GAGTAATGTGAACCATACTG+TGG + Chr1:3338423-3338442 MsG0180000245.01.T01:intron 40.0%
GCACGTAAAAGACAAAACAG+CGG - Chr1:3339126-3339145 None:intergenic 40.0%
GGATCTAGTGTCAAATCTTC+AGG - Chr1:3336785-3336804 None:intergenic 40.0%
GTAGAAATAAAACCCGGAGA+GGG + Chr1:3339983-3340002 MsG0180000245.01.T01:CDS 40.0%
GTGCCCAATCCTAACAAATA+TGG - Chr1:3336939-3336958 None:intergenic 40.0%
GTGGGTATAGTTGTTTGATG+CGG - Chr1:3337398-3337417 None:intergenic 40.0%
GTTGGTCGTTTAAATACAGG+GGG + Chr1:3338203-3338222 MsG0180000245.01.T01:CDS 40.0%
GTTGTAACAGTTGCATCAGT+TGG + Chr1:3337973-3337992 MsG0180000245.01.T01:CDS 40.0%
TAAAGCCCTGTGATGATAGA+AGG - Chr1:3340330-3340349 None:intergenic 40.0%
TACTGTGGTAAATTGAGAGG+CGG + Chr1:3338438-3338457 MsG0180000245.01.T01:intron 40.0%
TAGGAGATGTACTGTTTGCT+TGG + Chr1:3337196-3337215 MsG0180000245.01.T01:intron 40.0%
TCAGGAAGCTTTACAAGCAA+AGG + Chr1:3339596-3339615 MsG0180000245.01.T01:intron 40.0%
TCATCTCTGTTAAGATCTGG+AGG - Chr1:3336438-3336457 None:intergenic 40.0%
TCCTTTGGCCATATGAAGAT+TGG + Chr1:3340722-3340741 MsG0180000245.01.T01:three_prime_UTR 40.0%
TCTATCATCACAGGGCTTTA+TGG + Chr1:3340330-3340349 MsG0180000245.01.T01:three_prime_UTR 40.0%
TCTTTCGGTTCTATTGAAGC+GGG + Chr1:3335609-3335628 MsG0180000245.01.T01:CDS 40.0%
TGCATCAATGGCAACCTTAA+TGG + Chr1:3336601-3336620 MsG0180000245.01.T01:intron 40.0%
TGCGTACTAGAATCTTCTGA+AGG + Chr1:3338006-3338025 MsG0180000245.01.T01:CDS 40.0%
TGGACAAAGTAAGAAAGGAG+AGG + Chr1:3335681-3335700 MsG0180000245.01.T01:CDS 40.0%
TGGACACATTTCAAGGAAGA+TGG - Chr1:3340156-3340175 None:intergenic 40.0%
TGGCAACTAAAGCAAAGGAA+AGG - Chr1:3340064-3340083 None:intergenic 40.0%
TTCCGACTTCAACATCATAG+TGG + Chr1:3339517-3339536 MsG0180000245.01.T01:intron 40.0%
TTTCCTTTGCTTTAGTTGCC+AGG + Chr1:3340063-3340082 MsG0180000245.01.T01:CDS 40.0%
! CAGCTATTTGATGGACACAA+TGG + Chr1:3336354-3336373 MsG0180000245.01.T01:intron 40.0%
! CCTGGTTTCATTTTCTCATG+TGG + Chr1:3336319-3336338 MsG0180000245.01.T01:intron 40.0%
! GAGGTTGGTCGTTTAAATAC+AGG + Chr1:3338200-3338219 MsG0180000245.01.T01:CDS 40.0%
! GAGTTTTTGTGTGTTTTCCC+TGG + Chr1:3336301-3336320 MsG0180000245.01.T01:intron 40.0%
! GGTTAAGGATTTTTGCAGGT+TGG + Chr1:3338831-3338850 MsG0180000245.01.T01:intron 40.0%
! GGTTGGTCGTTTAAATACAG+GGG + Chr1:3338202-3338221 MsG0180000245.01.T01:CDS 40.0%
! GTACTAGAATCTTCTGAAGG+AGG + Chr1:3338009-3338028 MsG0180000245.01.T01:CDS 40.0%
! GTGATAGCTTTGCTCTCAAA+AGG - Chr1:3336806-3336825 None:intergenic 40.0%
! GTGCCTACAAGCTTTAATCA+AGG - Chr1:3337175-3337194 None:intergenic 40.0%
! GTTGTCATTTGCCGTTGATT+GGG + Chr1:3337623-3337642 MsG0180000245.01.T01:intron 40.0%
! TATATTACTCTGAGAAGCCC+CGG - Chr1:3336673-3336692 None:intergenic 40.0%
! TATCTGCAGTGATGGTGTTT+GGG + Chr1:3339339-3339358 MsG0180000245.01.T01:CDS 40.0%
! TATTTGTTAGGATTGGGCAC+TGG + Chr1:3336939-3336958 MsG0180000245.01.T01:intron 40.0%
! TCGTGTCCAGAGTCTAAAAT+AGG - Chr1:3336994-3337013 None:intergenic 40.0%
! TGAATCCCACACTTTGGAAA+TGG - Chr1:3338685-3338704 None:intergenic 40.0%
! TGGTTGGTATCGAGAATTTG+AGG + Chr1:3335528-3335547 MsG0180000245.01.T01:five_prime_UTR 40.0%
! TTATCTGCAGTGATGGTGTT+TGG + Chr1:3339338-3339357 MsG0180000245.01.T01:CDS 40.0%
! TTGTTTGATGCGGACTAATG+TGG - Chr1:3337388-3337407 None:intergenic 40.0%
! TTTTATTGGGTGACTCACGT+GGG + Chr1:3338638-3338657 MsG0180000245.01.T01:intron 40.0%
!! AACCACCCAAGTTTTGTGAA+AGG + Chr1:3340438-3340457 MsG0180000245.01.T01:three_prime_UTR 40.0%
!! AGAGGGTATTTCAGTACATG+AGG + Chr1:3340000-3340019 MsG0180000245.01.T01:CDS 40.0%
!! GAGGGTATTTCAGTACATGA+GGG + Chr1:3340001-3340020 MsG0180000245.01.T01:CDS 40.0%
!! TGGGGTGTTTAAGCTTGTTA+TGG - Chr1:3338286-3338305 None:intergenic 40.0%
!! TGGTAAAATGAGGAGTGCTA+TGG - Chr1:3338751-3338770 None:intergenic 40.0%
!!! TGTGGGACTGTTTTGATGTT+GGG + Chr1:3339482-3339501 MsG0180000245.01.T01:intron 40.0%
!!! TTGTGGGACTGTTTTGATGT+TGG + Chr1:3339481-3339500 MsG0180000245.01.T01:intron 40.0%
AAACTGCTTCCAAACCTGAC+AGG - Chr1:3337137-3337156 None:intergenic 45.0%
AATCCAGCAACCAAAGCTCT+AGG - Chr1:3336477-3336496 None:intergenic 45.0%
ACAGCGGTGAAAATGTGTGT+AGG - Chr1:3339110-3339129 None:intergenic 45.0%
ACATGCCACGACAACAATCA+AGG - Chr1:3339387-3339406 None:intergenic 45.0%
ACTGTGGTAAATTGAGAGGC+GGG + Chr1:3338439-3338458 MsG0180000245.01.T01:intron 45.0%
AGAAGATTCTAGTACGCAGC+GGG - Chr1:3338004-3338023 None:intergenic 45.0%
AGAATACATGGAGCCAGATG+TGG + Chr1:3339770-3339789 MsG0180000245.01.T01:CDS 45.0%
AGGAGCCATTTCCAAAGTGT+GGG + Chr1:3338677-3338696 MsG0180000245.01.T01:intron 45.0%
AGGGTTCGTATCACTTCTAG+CGG + Chr1:3338173-3338192 MsG0180000245.01.T01:CDS 45.0%
AGTAACCTTGAGAGCAAACG+GGG - Chr1:3339028-3339047 None:intergenic 45.0%
AGTTCAAATTCCACCTGGAC+AGG - Chr1:3335414-3335433 None:intergenic 45.0%
CAGAAGATTCTAGTACGCAG+CGG - Chr1:3338005-3338024 None:intergenic 45.0%
CAGAGAGTTCAAATTCCACC+TGG - Chr1:3335419-3335438 None:intergenic 45.0%
CAGGTGGAATTTGAACTCTC+TGG + Chr1:3335417-3335436 MsG0180000245.01.T01:five_prime_UTR 45.0%
CATGCCACGACAACAATCAA+GGG - Chr1:3339386-3339405 None:intergenic 45.0%
CCATCAAACGGTTCCTCTTT+CGG + Chr1:3335594-3335613 MsG0180000245.01.T01:CDS 45.0%
CCCAATCTTCATATGGCCAA+AGG - Chr1:3340726-3340745 None:intergenic 45.0%
CGCTTCAATAGAACCGAAAG+AGG - Chr1:3335610-3335629 None:intergenic 45.0%
GACAAGTATATGTCAGGCGT+AGG + Chr1:3337519-3337538 MsG0180000245.01.T01:intron 45.0%
GACAGTTCACAACAGGAAGT+GGG + Chr1:3340474-3340493 MsG0180000245.01.T01:three_prime_UTR 45.0%
GACTCCCTTCTATCATCACA+GGG + Chr1:3340322-3340341 MsG0180000245.01.T01:three_prime_UTR 45.0%
GAGAAGAAAGAAGCCATGGA+AGG + Chr1:3340085-3340104 MsG0180000245.01.T01:CDS 45.0%
GAGATGTACTGTTTGCTTGG+TGG + Chr1:3337199-3337218 MsG0180000245.01.T01:intron 45.0%
GAGATTGTTCATGGTCAAGC+TGG + Chr1:3335661-3335680 MsG0180000245.01.T01:CDS 45.0%
GAGGAGTGAACACCATCAAA+CGG + Chr1:3335582-3335601 MsG0180000245.01.T01:CDS 45.0%
GCACTGGAATTGAACAGCTT+AGG + Chr1:3336955-3336974 MsG0180000245.01.T01:intron 45.0%
GCCAGTAAAAGGAATGCTCA+AGG + Chr1:3339701-3339720 MsG0180000245.01.T01:CDS 45.0%
GCTTGACCATGAACAATCTC+AGG - Chr1:3335661-3335680 None:intergenic 45.0%
GGGAAAGAACAATGTCTGTG+AGG + Chr1:3335563-3335582 MsG0180000245.01.T01:exon 45.0%
GTTAGAGCTGATGCCTTAAC+AGG - Chr1:3337023-3337042 None:intergenic 45.0%
TAGGAGCCATTTCCAAAGTG+TGG + Chr1:3338676-3338695 MsG0180000245.01.T01:intron 45.0%
TCCAAAGTGTGGGATTCACA+CGG + Chr1:3338687-3338706 MsG0180000245.01.T01:intron 45.0%
TCTCCTGGCAACTAAAGCAA+AGG - Chr1:3340069-3340088 None:intergenic 45.0%
TCTGATTGTCAGAGGATGGT+TGG + Chr1:3335721-3335740 MsG0180000245.01.T01:CDS 45.0%
TGACAGTTCACAACAGGAAG+TGG + Chr1:3340473-3340492 MsG0180000245.01.T01:three_prime_UTR 45.0%
TGACTCCCTTCTATCATCAC+AGG + Chr1:3340321-3340340 MsG0180000245.01.T01:three_prime_UTR 45.0%
TGGGTCTCACCACTTTATGT+AGG + Chr1:3338657-3338676 MsG0180000245.01.T01:intron 45.0%
TGTACTGAAATACCCTCTCC+GGG - Chr1:3339998-3340017 None:intergenic 45.0%
TGTGTGATCCAAAAACGACG+CGG - Chr1:3334948-3334967 None:intergenic 45.0%
TGTTAGTATTGTGTGGGAGG+TGG - Chr1:3337262-3337281 None:intergenic 45.0%
! AAAGAAGTGCGCATTGTCGT+TGG + Chr1:3335495-3335514 MsG0180000245.01.T01:five_prime_UTR 45.0%
! AGGGAACTCCTTTTCAAAGC+AGG + Chr1:3336896-3336915 MsG0180000245.01.T01:intron 45.0%
! ATATTACTCTGAGAAGCCCC+GGG - Chr1:3336672-3336691 None:intergenic 45.0%
! CTTTTATTGGGTGACTCACG+TGG + Chr1:3338637-3338656 MsG0180000245.01.T01:intron 45.0%
! GAGAAAAACGGTAATGGTCG+AGG - Chr1:3335143-3335162 None:intergenic 45.0%
! GATCATTTTACCTGTCCAGG+TGG + Chr1:3335401-3335420 MsG0180000245.01.T01:five_prime_UTR 45.0%
! GCCTTGAGCATTCCTTTTAC+TGG - Chr1:3339705-3339724 None:intergenic 45.0%
! GCGGACTAATGTGGTAACAT+TGG - Chr1:3337379-3337398 None:intergenic 45.0%
! GGCTTCTTTTGATGTGGTAC+AGG - Chr1:3339684-3339703 None:intergenic 45.0%
! GGGAACTCCTTTTCAAAGCA+GGG + Chr1:3336897-3336916 MsG0180000245.01.T01:intron 45.0%
! GGTTGTCATTTGCCGTTGAT+TGG + Chr1:3337622-3337641 MsG0180000245.01.T01:intron 45.0%
! GTACTGTTTGCTTGGTGGTT+GGG + Chr1:3337204-3337223 MsG0180000245.01.T01:intron 45.0%
! TACTGTTTGCTTGGTGGTTG+GGG + Chr1:3337205-3337224 MsG0180000245.01.T01:intron 45.0%
! TGTACTGTTTGCTTGGTGGT+TGG + Chr1:3337203-3337222 MsG0180000245.01.T01:intron 45.0%
! TTGTCGTTGGTTGACTCTAG+TGG + Chr1:3335508-3335527 MsG0180000245.01.T01:five_prime_UTR 45.0%
! TTTTGATGTGGTACAGGAGC+AGG - Chr1:3339678-3339697 None:intergenic 45.0%
!! ACGGTGTCGTTTAGATGATC+AGG - Chr1:3335010-3335029 None:intergenic 45.0%
!! AGGTTGGTCCTTTGAGATGT+TGG + Chr1:3338847-3338866 MsG0180000245.01.T01:intron 45.0%
!! ATGGAGAAAGAGGTGTTACG+AGG - Chr1:3335048-3335067 None:intergenic 45.0%
AAAGGAAAGGTCCATCCCAG+GGG - Chr1:3340051-3340070 None:intergenic 50.0%
CAAAGGAAAGGTCCATCCCA+GGG - Chr1:3340052-3340071 None:intergenic 50.0%
CATCACTGCAGATAACGAGC+CGG - Chr1:3339333-3339352 None:intergenic 50.0%
CCAAAGTGTGGGATTCACAC+GGG + Chr1:3338688-3338707 MsG0180000245.01.T01:intron 50.0%
CCAGGAGAAGAAAGAAGCCA+TGG + Chr1:3340081-3340100 MsG0180000245.01.T01:CDS 50.0%
CCATGGCTTCTTTCTTCTCC+TGG - Chr1:3340084-3340103 None:intergenic 50.0%
CCGAAAGAGGAACCGTTTGA+TGG - Chr1:3335597-3335616 None:intergenic 50.0%
CTGCTGGAAGTTATAACCGC+AGG + Chr1:3337747-3337766 MsG0180000245.01.T01:intron 50.0%
GACACGAGTCTTGCCTGTTA+AGG + Chr1:3337007-3337026 MsG0180000245.01.T01:intron 50.0%
GCCTGGTATCTCCCAATCAA+CGG - Chr1:3337637-3337656 None:intergenic 50.0%
GCTCTGCTATGCTTTCAGAG+AGG + Chr1:3339814-3339833 MsG0180000245.01.T01:CDS 50.0%
GGAGTCATTGTTGCTACGCT+AGG - Chr1:3340308-3340327 None:intergenic 50.0%
GGATGCTTTACCTGCAGAAG+TGG + Chr1:3339360-3339379 MsG0180000245.01.T01:CDS 50.0%
GGTCGTTTAAATACAGGGGG+AGG + Chr1:3338206-3338225 MsG0180000245.01.T01:CDS 50.0%
GTCATTGTTGCTACGCTAGG+AGG - Chr1:3340305-3340324 None:intergenic 50.0%
GTTCGTATCACTTCTAGCGG+CGG + Chr1:3338176-3338195 MsG0180000245.01.T01:CDS 50.0%
TACAGCTCCACTACCACATC+TGG - Chr1:3339786-3339805 None:intergenic 50.0%
TCAATTCAGCTGTCTACCGC+TGG + Chr1:3339304-3339323 MsG0180000245.01.T01:intron 50.0%
! ACTCTAGGAACTAGAGAGCC+TGG - Chr1:3337654-3337673 None:intergenic 50.0%
! CGTTGGTTGACTCTAGTGGT+TGG + Chr1:3335512-3335531 MsG0180000245.01.T01:five_prime_UTR 50.0%
! GTAGTGGAGCTGTATGAGGA+AGG + Chr1:3339792-3339811 MsG0180000245.01.T01:CDS 50.0%
! GTGGACTACATCAGGCAATG+TGG + Chr1:3337327-3337346 MsG0180000245.01.T01:intron 50.0%
! TTGCCTAGAGCTTTGGTTGC+TGG + Chr1:3336471-3336490 MsG0180000245.01.T01:CDS 50.0%
!! GTCAGAGGATGGTTGGTGAT+GGG + Chr1:3335728-3335747 MsG0180000245.01.T01:CDS 50.0%
!! TCAGAGGATGGTTGGTGATG+GGG + Chr1:3335729-3335748 MsG0180000245.01.T01:CDS 50.0%
!! TGAACTCTCTGGCTTGCTTG+AGG + Chr1:3335428-3335447 MsG0180000245.01.T01:five_prime_UTR 50.0%
!! TGTCAGAGGATGGTTGGTGA+TGG + Chr1:3335727-3335746 MsG0180000245.01.T01:CDS 50.0%
!! TGTGGTAGTGGAGCTGTATG+AGG + Chr1:3339788-3339807 MsG0180000245.01.T01:CDS 50.0%
AGCAGCGTTGCCTAGAGCTT+TGG + Chr1:3336464-3336483 MsG0180000245.01.T01:CDS 55.0%
ATGTGGTTGCAGTGGCGTTG+TGG - Chr1:3337417-3337436 None:intergenic 55.0%
ATTCAGCTGTCTACCGCTGG+AGG + Chr1:3339307-3339326 MsG0180000245.01.T01:intron 55.0%
CAATCAAGGGCCACTTCTGC+AGG - Chr1:3339373-3339392 None:intergenic 55.0%
CATGGAGCCAGATGTGGTAG+TGG + Chr1:3339776-3339795 MsG0180000245.01.T01:CDS 55.0%
CCCGTGTGAATCCCACACTT+TGG - Chr1:3338691-3338710 None:intergenic 55.0%
CCGTGAAAGACACAAGCCAC+CGG - Chr1:3338874-3338893 None:intergenic 55.0%
CGGCTCGTTATCTGCAGTGA+TGG + Chr1:3339331-3339350 MsG0180000245.01.T01:CDS 55.0%
CGTGAAAGACACAAGCCACC+GGG - Chr1:3338873-3338892 None:intergenic 55.0%
GAGAGCAAACGGGGTGCAAA+TGG - Chr1:3339019-3339038 None:intergenic 55.0%
GCAAAGGAAAGGTCCATCCC+AGG - Chr1:3340053-3340072 None:intergenic 55.0%
GGGGGAGTGATAAGGAGAGA+GGG + Chr1:3337230-3337249 MsG0180000245.01.T01:intron 55.0%
GTGGCCCTTGATTGTTGTCG+TGG + Chr1:3339379-3339398 MsG0180000245.01.T01:CDS 55.0%
TATCACTTCTAGCGGCGGTG+AGG + Chr1:3338181-3338200 MsG0180000245.01.T01:CDS 55.0%
TGATGTGGTACAGGAGCAGG+TGG - Chr1:3339675-3339694 None:intergenic 55.0%
TGTGGTTGCAGTGGCGTTGT+GGG - Chr1:3337416-3337435 None:intergenic 55.0%
TTGCACCCCGTTTGCTCTCA+AGG + Chr1:3339020-3339039 MsG0180000245.01.T01:intron 55.0%
TTGTCGTGGCATGTCAGCAG+AGG + Chr1:3339393-3339412 MsG0180000245.01.T01:CDS 55.0%
! AAATACAGGGGGAGGTGCAG+AGG + Chr1:3338214-3338233 MsG0180000245.01.T01:CDS 55.0%
! GCCGTTGATTGGGAGATACC+AGG + Chr1:3337633-3337652 MsG0180000245.01.T01:intron 55.0%
! GTTTGCTTGGTGGTTGGGGT+GGG + Chr1:3337209-3337228 MsG0180000245.01.T01:intron 55.0%
! TGTTTGCTTGGTGGTTGGGG+TGG + Chr1:3337208-3337227 MsG0180000245.01.T01:intron 55.0%
! TTTGCTTGGTGGTTGGGGTG+GGG + Chr1:3337210-3337229 MsG0180000245.01.T01:intron 55.0%
!! GGTCCTTTGAGATGTTGGCC+CGG + Chr1:3338852-3338871 MsG0180000245.01.T01:CDS 55.0%
ACTTCTAGCGGCGGTGAGGT+TGG + Chr1:3338185-3338204 MsG0180000245.01.T01:CDS 60.0%
CCACCGGGCCAACATCTCAA+AGG - Chr1:3338858-3338877 None:intergenic 60.0%
GGGGGGAGTGATAAGGAGAG+AGG + Chr1:3337229-3337248 MsG0180000245.01.T01:intron 60.0%
TTGGGGTGGGGGGAGTGATA+AGG + Chr1:3337222-3337241 MsG0180000245.01.T01:intron 60.0%
! ACCCTCAAAAAGTGCGCCCC+TGG + Chr1:3340032-3340051 MsG0180000245.01.T01:CDS 60.0%
! CAAAAAGTGCGCCCCTGGGA+TGG + Chr1:3340037-3340056 MsG0180000245.01.T01:CDS 60.0%
! CCCTCAAAAAGTGCGCCCCT+GGG + Chr1:3340033-3340052 MsG0180000245.01.T01:CDS 60.0%
! TTGCTTGGTGGTTGGGGTGG+GGG + Chr1:3337211-3337230 MsG0180000245.01.T01:intron 60.0%
!! CCCAGGGGCGCACTTTTTGA+GGG - Chr1:3340036-3340055 None:intergenic 60.0%
!! CCTTTGAGATGTTGGCCCGG+TGG + Chr1:3338855-3338874 MsG0180000245.01.T01:CDS 60.0%
!! GCTGGGATCCGCGTCGTTTT+TGG + Chr1:3334937-3334956 MsG0180000245.01.T01:five_prime_UTR 60.0%
!! TCCCAGGGGCGCACTTTTTG+AGG - Chr1:3340037-3340056 None:intergenic 60.0%
AGCTGTCTACCGCTGGAGGC+CGG + Chr1:3339311-3339330 MsG0180000245.01.T01:intron 65.0%
GATAACGAGCCGGCCTCCAG+CGG - Chr1:3339323-3339342 None:intergenic 65.0%
GGAGCAGGTGGCTTCTCCTG+AGG - Chr1:3339663-3339682 None:intergenic 65.0%
! TGCTTGGTGGTTGGGGTGGG+GGG + Chr1:3337212-3337231 MsG0180000245.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 3334894 3340815 3334894 ID=MsG0180000245.01;Name=MsG0180000245.01
Chr1 mRNA 3334894 3340815 3334894 ID=MsG0180000245.01.T01;Parent=MsG0180000245.01;Name=MsG0180000245.01.T01;_AED=0.32;_eAED=0.32;_QI=339|0.88|0.9|1|0.77|0.7|10|551|447
Chr1 exon 3340211 3340815 3340211 ID=MsG0180000245.01.T01:exon:6081;Parent=MsG0180000245.01.T01
Chr1 exon 3339922 3340150 3339922 ID=MsG0180000245.01.T01:exon:6080;Parent=MsG0180000245.01.T01
Chr1 exon 3339600 3339835 3339600 ID=MsG0180000245.01.T01:exon:6079;Parent=MsG0180000245.01.T01
Chr1 exon 3339313 3339438 3339313 ID=MsG0180000245.01.T01:exon:6078;Parent=MsG0180000245.01.T01
Chr1 exon 3338849 3338956 3338849 ID=MsG0180000245.01.T01:exon:6077;Parent=MsG0180000245.01.T01
Chr1 exon 3338172 3338235 3338172 ID=MsG0180000245.01.T01:exon:6076;Parent=MsG0180000245.01.T01
Chr1 exon 3337926 3338079 3337926 ID=MsG0180000245.01.T01:exon:6075;Parent=MsG0180000245.01.T01
Chr1 exon 3336357 3336528 3336357 ID=MsG0180000245.01.T01:exon:6074;Parent=MsG0180000245.01.T01
Chr1 exon 3335390 3335774 3335390 ID=MsG0180000245.01.T01:exon:6073;Parent=MsG0180000245.01.T01
Chr1 exon 3334894 3335048 3334894 ID=MsG0180000245.01.T01:exon:6072;Parent=MsG0180000245.01.T01
Chr1 five_prime_UTR 3334894 3335048 3334894 ID=MsG0180000245.01.T01:five_prime_utr;Parent=MsG0180000245.01.T01
Chr1 five_prime_UTR 3335390 3335573 3335390 ID=MsG0180000245.01.T01:five_prime_utr;Parent=MsG0180000245.01.T01
Chr1 CDS 3335574 3335774 3335574 ID=MsG0180000245.01.T01:cds;Parent=MsG0180000245.01.T01
Chr1 CDS 3336357 3336528 3336357 ID=MsG0180000245.01.T01:cds;Parent=MsG0180000245.01.T01
Chr1 CDS 3337926 3338079 3337926 ID=MsG0180000245.01.T01:cds;Parent=MsG0180000245.01.T01
Chr1 CDS 3338172 3338235 3338172 ID=MsG0180000245.01.T01:cds;Parent=MsG0180000245.01.T01
Chr1 CDS 3338849 3338956 3338849 ID=MsG0180000245.01.T01:cds;Parent=MsG0180000245.01.T01
Chr1 CDS 3339313 3339438 3339313 ID=MsG0180000245.01.T01:cds;Parent=MsG0180000245.01.T01
Chr1 CDS 3339600 3339835 3339600 ID=MsG0180000245.01.T01:cds;Parent=MsG0180000245.01.T01
Chr1 CDS 3339922 3340150 3339922 ID=MsG0180000245.01.T01:cds;Parent=MsG0180000245.01.T01
Chr1 CDS 3340211 3340264 3340211 ID=MsG0180000245.01.T01:cds;Parent=MsG0180000245.01.T01
Chr1 three_prime_UTR 3340265 3340815 3340265 ID=MsG0180000245.01.T01:three_prime_utr;Parent=MsG0180000245.01.T01
Gene Sequence

>MsG0180000245.01.T01

ATGTCTGTGAGGAGTGAACACCATCAAACGGTTCCTCTTTCGGTTCTATTGAAGCGGGAGTTGATGAGCGAGAAAATTGAGAAACCTGAGATTGTTCATGGTCAAGCTGGACAAAGTAAGAAAGGAGAGGATTTCGCCTTGTTAAAGTCTGATTGTCAGAGGATGGTTGGTGATGGGGTCTATACATATTCTGTTTATGGGCTATTTGATGGACACAATGGATCTGCTGCTGCTATTTATTCTAAGGAGAACCTTCTAAATAATGTCGTAAGTGCAATTCCTCCAGATCTTAACAGAGATGAGTGGTTAGCAGCGTTGCCTAGAGCTTTGGTTGCTGGATTTGTAAAAACTGATAAAGATTTTGCAGAGAAAGGACAAAAATCAGGAACAACTGTCACCTTTGTGATTATAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGCGATTCCCGCTGCGTACTAGAATCTTCTGAAGGAGGGATTTATTACTTGTCAGCAGATCATAGGCTAGAAACAAATGAAGAAGAGAGGGTTCGTATCACTTCTAGCGGCGGTGAGGTTGGTCGTTTAAATACAGGGGGAGGTGCAGAGGTTGGTCCTTTGAGATGTTGGCCCGGTGGCTTGTGTCTTTCACGGTCTATTGGAGATATGGATATTGGTGAATTTGTTGTCCCTGTACCATATGTAAAACAAGTGAAGCTGTCTACCGCTGGAGGCCGGCTCGTTATCTGCAGTGATGGTGTTTGGGATGCTTTACCTGCAGAAGTGGCCCTTGATTGTTGTCGTGGCATGTCAGCAGAGGCTGCTGCACCACAGATTGTAAAAGAAGCTTTACAAGCAAAGGGACTTAGAGATGATACAACCTGTATTGTTGTCGATATATTACCTCAGGAGAAGCCACCTGCTCCTGTACCACATCAAAAGAAGCCAGTAAAAGGAATGCTCAAGGCCATGTTTCGTAAAAAGTCTTCGGAATCATCATCTTATATTGACAAAGAATACATGGAGCCAGATGTGGTAGTGGAGCTGTATGAGGAAGGCTCTGCTATGCTTTCAGAGAGGTTAGAAACAAAATATCCACTATGCAACATGTTCAAGTTGTTCATATGTGCAGTATGTCAAGTAGAAATAAAACCCGGAGAGGGTATTTCAGTACATGAGGGTGCAGAAAACCCTCAAAAAGTGCGCCCCTGGGATGGACCTTTCCTTTGCTTTAGTTGCCAGGAGAAGAAAGAAGCCATGGAAGGGAAAAGATCATTAGGTATTTTTTTACGACTCCTCTTCATTTCTATAGACTTAGCAGCGGAAGTGACGAATGAACTCTCATGTATATTTGTATTTTGA
Protein sequence

>MsG0180000245.01.T01

MSVRSEHHQTVPLSVLLKRELMSEKIEKPEIVHGQAGQSKKGEDFALLKSDCQRMVGDGVYTYSVYGLFDGHNGSAAAIYSKENLLNNVVSAIPPDLNRDEWLAALPRALVAGFVKTDKDFAEKGQKSGTTVTFVIIEGWVVTVASVGDSRCVLESSEGGIYYLSADHRLETNEEERVRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDIGEFVVPVPYVKQVKLSTAGGRLVICSDGVWDALPAEVALDCCRGMSAEAAAPQIVKEALQAKGLRDDTTCIVVDILPQEKPPAPVPHQKKPVKGMLKAMFRKKSSESSSYIDKEYMEPDVVVELYEEGSAMLSERLETKYPLCNMFKLFICAVCQVEIKPGEGISVHEGAENPQKVRPWDGPFLCFSCQEKKEAMEGKRSLGIFLRLLFISIDLAAEVTNELSCIFVF*