AlfalfaGEDB | MsG0580025441.01

M. sativa cultivar ZhongmuNo.1 / MsG0580025441.01

KEGG: K20924
GO: GO:0016020 GO:0016760 GO:0030244
PFAM: PF03552 PF14570

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025441.01.T01	XP_003612797.1	97.861	1122	23	1	1	1122	1	1121	0	2283

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025441.01.T01	Q9M9M4	74.101	1112	261	11	21	1122	51	1145	0	1727

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025441.01.T01	G7KCB0	97.861	1122	23	1	1	1122	1	1121	0.0	2283

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000245.01	MsG0580025441.01	0.847301	1.261258e-59	2.231703e-56
MsG0180005199.01	MsG0580025441.01	0.827460	1.545144e-54	1.492743e-51
MsG0180005636.01	MsG0580025441.01	0.802569	5.273049e-49	2.591518e-46
MsG0280007923.01	MsG0580025441.01	0.817885	2.614736e-52	1.927632e-49
MsG0280009108.01	MsG0580025441.01	0.872953	2.138670e-67	9.118099e-64
MsG0280009139.01	MsG0580025441.01	0.876771	1.071333e-68	5.258566e-65
MsG0380011745.01	MsG0580025441.01	0.800298	1.539176e-48	7.141579e-46
MsG0380015420.01	MsG0580025441.01	-0.839890	1.208658e-57	1.692529e-54
MsG0380015561.01	MsG0580025441.01	0.852244	5.243858e-61	1.088941e-57
MsG0380015676.01	MsG0580025441.01	0.814557	1.449767e-51	9.759338e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0580025441.01.T01	MTR_5g029190	97.861	1122	23	1	1	1122	1	1121	2283
MsG0580025441.01.T01	MTR_4g077910	75.247	1115	253	7	16	1122	43	1142	1754
MsG0580025441.01.T01	MTR_1g039445	65.429	1131	339	13	2	1122	17	1105	1546
MsG0580025441.01.T01	MTR_1g039480	65.110	1135	357	12	2	1122	24	1133	1538
MsG0580025441.01.T01	MTR_7g109200	63.923	1142	363	17	7	1122	53	1171	1426
MsG0580025441.01.T01	MTR_2g438220	68.526	950	275	8	180	1120	88	1022	1380
MsG0580025441.01.T01	MTR_7g116230	59.730	1038	229	16	86	1119	2	854	1183
MsG0580025441.01.T01	MTR_4g130510	42.385	1149	459	24	67	1108	3	1055	870
MsG0580025441.01.T01	MTR_4g130510	50.515	873	339	13	248	1108	230	1021	868
MsG0580025441.01.T01	MTR_3g030040	49.499	899	341	16	242	1108	244	1061	859

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0580025441.01.T01	AT3G03050	74.101	1112	261	11	21	1122	51	1145	1727
MsG0580025441.01.T01	AT5G16910	72.301	1130	282	11	6	1122	34	1145	1698
MsG0580025441.01.T01	AT4G38190	67.575	1101	315	10	11	1108	31	1092	1570
MsG0580025441.01.T01	AT1G02730	64.821	1120	359	16	22	1122	78	1181	1446
MsG0580025441.01.T01	AT2G33100	68.835	953	272	7	176	1117	95	1033	1388
MsG0580025441.01.T01	AT2G33100	68.835	953	272	7	176	1117	95	1033	1388
MsG0580025441.01.T01	AT1G32180	68.552	884	250	7	254	1121	107	978	1274
MsG0580025441.01.T01	AT1G32180	68.552	884	250	7	254	1121	107	978	1274
MsG0580025441.01.T01	AT5G05170	49.418	945	344	21	216	1108	186	1048	881
MsG0580025441.01.T01	AT5G17420	43.682	1108	457	21	67	1108	3	1009	877

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Find 334 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGCTGCCTCGGCCA+TGG	0.441837	5:+18680867	None:intergenic
AAACATAGACTAGCATAGGA+AGG	0.640272	5:+18679929	None:intergenic
AAACATCGAGATCAGCAACA+CGG	0.683986	5:+18681103	None:intergenic
AAACCAGATTTCACAAACTA+CGG	0.567607	5:+18681173	None:intergenic
AAAGAAGACAGTGTTATGAT+TGG	0.474926	5:+18679663	None:intergenic
AAAGATTGATCCTCTACGTC+AGG	0.444850	5:+18679472	None:intergenic
AAAGCTACATGGATGACTGA+CGG	0.645727	5:-18680556	MsG0580025441.01.T01:CDS
AAAGGGCTTATGGGTAGAAG+AGG	0.604732	5:-18678407	MsG0580025441.01.T01:CDS
AAATCTGGTTTGCATTCTCT+TGG	0.381746	5:-18681161	MsG0580025441.01.T01:CDS
AAATGGCATGAATTTAACTG+AGG	0.620427	5:-18679962	MsG0580025441.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCAGATTTCACAAACTA+CGG	+	Chr5:18679194-18679213	None:intergenic	30.0%
AAAGAAGACAGTGTTATGAT+TGG	+	Chr5:18680704-18680723	None:intergenic	30.0%
AAATGGCATGAATTTAACTG+AGG	-	Chr5:18680402-18680421	MsG0580025441.01.T01:intron	30.0%
AATAGTATTAGCGGTAACAA+GGG	+	Chr5:18679392-18679411	None:intergenic	30.0%
ACATGCTAAACAAAATGTCA+TGG	+	Chr5:18678902-18678921	None:intergenic	30.0%
ACTGTAACACTTCACTAATA+TGG	-	Chr5:18680014-18680033	MsG0580025441.01.T01:CDS	30.0%
ACTTTAACATCAAAATCCTC+CGG	-	Chr5:18681726-18681745	MsG0580025441.01.T01:CDS	30.0%
AGACCATATTTGAAAAAAGG+GGG	-	Chr5:18677906-18677925	MsG0580025441.01.T01:three_prime_UTR	30.0%
AGGATTGCTTATCTTAATGT+TGG	-	Chr5:18681411-18681430	MsG0580025441.01.T01:intron	30.0%
AGTATCATACAGGTAATTGT+CGG	-	Chr5:18679892-18679911	MsG0580025441.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	18677897	18682489	18677897	ID=MsG0580025441.01;Name=MsG0580025441.01
Chr5	mRNA	18677897	18682489	18677897	ID=MsG0580025441.01.T01;Parent=MsG0580025441.01;Name=MsG0580025441.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|0.5\|0.33\|1\|1\|1\|3\|386\|1122
Chr5	exon	18677897	18680037	18677897	ID=MsG0580025441.01.T01:exon:28604;Parent=MsG0580025441.01.T01
Chr5	exon	18680483	18681290	18680483	ID=MsG0580025441.01.T01:exon:28603;Parent=MsG0580025441.01.T01
Chr5	exon	18681684	18682489	18681684	ID=MsG0580025441.01.T01:exon:28602;Parent=MsG0580025441.01.T01
Chr5	CDS	18681684	18682489	18681684	ID=MsG0580025441.01.T01:cds;Parent=MsG0580025441.01.T01
Chr5	CDS	18680483	18681290	18680483	ID=MsG0580025441.01.T01:cds;Parent=MsG0580025441.01.T01
Chr5	CDS	18678283	18680037	18678283	ID=MsG0580025441.01.T01:cds;Parent=MsG0580025441.01.T01
Chr5	three_prime_UTR	18677897	18678282	18677897	ID=MsG0580025441.01.T01:three_prime_utr;Parent=MsG0580025441.01.T01

Gene Sequence

>MsG0580025441.01.T01

ATGGGTTCTAGACCATATTTGAAAAAAGGGGGTTCTGTGGTGAGGATTTCTCAATTGAGTAATGATATGGATCAAGAAACTGATGAGAATCTTGCTACCTATACAGTGCAAGTTCCTATAACACCTGATAACCAACCTATGTCGGCTAAAGATATTACTCTCGAGAGGTCAACTTCGAGGAGAGTGGAGGATCAATATGCGTCGAGTTCTATGTTTACCGGTGGTTTTAATCAGGCTACTAGAGCTCAGTTCAAGGATAAGGTGATTGAGTCTGAATCAAGTCATCCTCAGATGGCCGGGACTAAAGGGTCGGCGTGTGAGATGTCGGGGTGTGATGGGAAGGTCATGACTGATGAAAGAGGTTTGGAAATACTTCCTTGTGAGTGTGATTTCAAGATTTGTAGGAATTGTTATATGGATACTTTGAGGAATGGTGAAGGGGTTTGCCCTGGATGTAACGAGGCTTACAAGGAGCAAGCAATGGAAGAGGCTGCTGCTGTGGTTAATCGACAATCACTACCTTTGCCACCTGGTGCGTCGAAGATGGAGAGGAGATTGTCGATGATGAAATCGGGGAATTTGACGAGGAGCCAAACTAATGAATTTGATCATGCTCAATGGTTGTTTGAGACTAAAGGGACTTATGGATATGGAAACGCTATGTGGCCTAAAGATCCGGTGAATGGTGCTAGTTCTAGTTCTGGTTCTGATTGGATGGGGGGTGACCCTAATGCTTTCAAAGATAAGCCGTGGAGGCCGTTGACCCGGAAAGTGAATATTCCTGCTGCAATTTTGAGTCCTTATAGGCTCATAATATTAGCTCGGATGGTGATTCTCGTTCTCTTCCTTCACTGGAGGGTAGTAAACCCGAATGACGATGCAATGTGGCTGTGGGGCATGTCCGTAGTTTGTGAAATCTGGTTTGCATTCTCTTGGCTTCTTGACCAGCTCCCTAAGCTCTTTCCGATAAACCGTGTTGCTGATCTCGATGTTTTGAAAGAGAAGTTTGAAACTCCTAGTCCAGCCAATCCAACAGGGAAATCTGATCTCCCGGGAATTGATATGTTCGTGTCAACTGCCGATCCAGAAAAAGAGCCGCCCCTTGTTACCGCTAATACTATTCTTTCAATTCTAGCAGCTGAGTACCCTGTTGATAAACTCGCATGTTATGTCTCTGATGACGGCGGTTCACTTCTAACTTTTGAGGCCATGGCCGAGGCAGCAAGTTTTGCGGAGTTGTGGGTTCCTTTTTGTCGGAAGCACGACATTGAACCAAGGAACCCGGAATCTTACTTTAGTTTGAAGAGAGATCCCTACAAGAACAAAGTACGTTCGGACTTTGTTAGGGACCGCAGGAAGGTGAAGCGCGAGTATGAGGAATTCAAGGTTCGGATTAATGGCCTTCCTGATTCAATCCGGAGGCGTGCTGATGCTTATAATGCTAGAGAGGAGATCAAAGCTATGAGGCTATGGAGAGAGGCTGCAACTGATGAACCGATGGAGAATTTGAAAATTTCTAAAGCTACATGGATGACTGACGGCACTCACTGGCCTGGGACTTGGACAGCTTCCGCACCAGAGCATTCTCGGGGTGATCATTCCAGTATCATACAGGTGATGTTGAAACCTCCAAGTGACGAGCCACTAACCGGCCCAGAATCAGATTCAAATGGCATGAATTTAACTGAGGTTGATATTCGCCTTCCTATGCTAGTCTATGTTTCTCGTGAAAAGAGACCTGGCTATGATCACAATAAGAAAGCGGGGGCCATGAATGCCTTGGTTCGAGCTTCAGCCGTAATGTCTAATGGTCCTTTCATACTTAATCTTGACTGTGACCATTACATATATAACTCTGAGGCAATCAGGGAAGGTATGTGCTATATGATGGACCGCGATGGGGACAAGATCAGCTACGTTCAATTTCCTCAAAGGTTTGAAGGAATCGACCCGTCAGATCGGTATGCCAATCATAACACTGTCTTCTTTGATGTCAATATGCGAGCTCTTGATGGTATCCAGGGTCCTGTATATGTTGGTACTGGATGCTTATTTCGAAGAACTGCACTCTATGGCTTTGATCCTCCCCGAGTTCAAGAAGAGGCCACTGGTTGGTTTGGTAGTAAGAAAAAGAATTCCTCAACAGTTGCCTCAGTCCCTGACGTAGAGGATCAATCTTTGAGGAATGGCGGTAGCATCAATGAAGAAGAAATGAGTAGCGCTCTTATTCCCAAGAAATTCGGCAACTCGACTCTTTTTATTGACTCAATCAGGGTGGCAGAGTTCCAAGGGAGACCACTTGCTGATCATCCGTCCATAAAAAACGGACGTCAACCTGGTGCTCTAACACTTCCTCGAGATCTTCTTGATGCTGCTACTATCGCTGAGGCAATCAGTGCCATCTCGTGCTGGTACGAAGATAAGACAGAATGGGGAGATAGAGTCGGATGGATTTATGGGTCTGTAACCGAGGATGTTGTGACAGGTTATAGAATGCACAATAGAGGATGGAGGTCTGTGTATTGTGTGACCAAGAGGGACGCCTTCCGAGGTACTGCTCCAATCAATCTGACAGACCGGCTTCACCAAGTTCTTCGATGGGCAACTGGCTCAGTCGAAATATTCTTTTCGCGGAACAATGCAATCTTGGCTAACTCTAGACTGAAATTTTTGCAAAGGATTGCTTATCTTAATGTTGGAATATATCCATTCACTTCATTCTTCCTCATTGTTTATTGCTTCCTCCCGGCTCTTTCTCTTTTCACTGGCCAGTTCATAGTCCAATCCCTTCAAGTCACTTTCTTAATTTACCTCTTGGGAATCACCGTGACACTTATTCTTCTTGCTGTTCTCGAGATCAAATGGTCAGGCATCGAACTCGAAGAATGGTGGAGAAACGAGCAATTCTGGTTGATCGGAGGCACAAGTGCACATTTTGCCGCGGTTCTTCAAGGTCTACTCAAAGTTATAGCCGGCATCGAGATCTCATTCACTTTAACATCAAAATCCTCCGGCGATGATGAAAACGACGAGTACGCTGATCTCTACATCATCAAATGGTCCTCCTTGATGATACCGCCGCTCACAATCATGATGGTTAACTTAATCGCAATTGCAACTGCGGTTAGTAGGACTATATACAGCGAGGATCGTCAATGGAGTAGTTTACTCGGAGGTGTATTCTTCAGTTTTTGGGTATTGGCTCATTTATATCCATTTGCAAAAGGGCTTATGGGTAGAAGAGGTAGAACACCAACAATTGTGTTTGTTTGGTCAGCTTTAATATCAATCACTATATCACTTCTATGGGTTGCTATTGATCCTCCTTCTGGTAACAATCAAATTGGAGGGTCATTTCAATTCCCTTGA

Protein sequence

>MsG0580025441.01.T01

MGSRPYLKKGGSVVRISQLSNDMDQETDENLATYTVQVPITPDNQPMSAKDITLERSTSRRVEDQYASSSMFTGGFNQATRAQFKDKVIESESSHPQMAGTKGSACEMSGCDGKVMTDERGLEILPCECDFKICRNCYMDTLRNGEGVCPGCNEAYKEQAMEEAAAVVNRQSLPLPPGASKMERRLSMMKSGNLTRSQTNEFDHAQWLFETKGTYGYGNAMWPKDPVNGASSSSGSDWMGGDPNAFKDKPWRPLTRKVNIPAAILSPYRLIILARMVILVLFLHWRVVNPNDDAMWLWGMSVVCEIWFAFSWLLDQLPKLFPINRVADLDVLKEKFETPSPANPTGKSDLPGIDMFVSTADPEKEPPLVTANTILSILAAEYPVDKLACYVSDDGGSLLTFEAMAEAASFAELWVPFCRKHDIEPRNPESYFSLKRDPYKNKVRSDFVRDRRKVKREYEEFKVRINGLPDSIRRRADAYNAREEIKAMRLWREAATDEPMENLKISKATWMTDGTHWPGTWTASAPEHSRGDHSSIIQVMLKPPSDEPLTGPESDSNGMNLTEVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAVMSNGPFILNLDCDHYIYNSEAIREGMCYMMDRDGDKISYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGIQGPVYVGTGCLFRRTALYGFDPPRVQEEATGWFGSKKKNSSTVASVPDVEDQSLRNGGSINEEEMSSALIPKKFGNSTLFIDSIRVAEFQGRPLADHPSIKNGRQPGALTLPRDLLDAATIAEAISAISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNAILANSRLKFLQRIAYLNVGIYPFTSFFLIVYCFLPALSLFTGQFIVQSLQVTFLIYLLGITVTLILLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHFAAVLQGLLKVIAGIEISFTLTSKSSGDDENDEYADLYIIKWSSLMIPPLTIMMVNLIAIATAVSRTIYSEDRQWSSLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSALISITISLLWVAIDPPSGNNQIGGSFQFP*