AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000415.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000415.01.T01 MTR_1g016270 89.818 275 28 0 13 287 1 275 1.90e-141 402
MsG0180000415.01.T01 MTR_8g097140 46.739 276 95 8 16 283 3 234 1.78e-50 168
MsG0180000415.01.T01 MTR_1g016280 93.548 62 4 0 288 349 26 87 7.57e-36 125
MsG0180000415.01.T01 MTR_1g016230 85.185 54 8 0 289 342 900 953 4.87e-22 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000415.01.T01 AT4G33010 85.455 55 8 0 288 342 882 936 2.52e-24 104
MsG0180000415.01.T01 AT2G26080 85.455 55 8 0 288 342 888 942 2.55e-24 104
MsG0180000415.01.T01 AT4G33010 85.455 55 8 0 288 342 882 936 3.27e-24 104
MsG0180000415.01.T01 AT5G60030 58.621 58 24 0 13 70 1 58 7.28e-16 77.4
MsG0180000415.01.T01 AT1G75335 58.621 58 24 0 13 70 1 58 3.66e-15 70.9

Find 77 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTGACTTAAGAGGCTTTA+AGG 0.097607 1:-5704168 MsG0180000415.01.T01:intron
GGAAAGAAGAAACTTGAATT+TGG 0.237098 1:-5705280 MsG0180000415.01.T01:CDS
GAAAGCAAGGTATGCATATA+TGG 0.320761 1:-5703931 MsG0180000415.01.T01:CDS
AAGAAGGAAAGGAGTGTAGA+AGG 0.341318 1:-5705166 MsG0180000415.01.T01:CDS
AATGGTGTGAAGAGTGAAAA+TGG 0.377376 1:-5704983 MsG0180000415.01.T01:CDS
TGAAAAGGAGAAGAATTTAG+AGG 0.379641 1:-5705059 MsG0180000415.01.T01:CDS
AAGAAGAATGGAAGTGAGTT+AGG 0.389124 1:-5705247 MsG0180000415.01.T01:CDS
TATCATCTGTTGTGTGGCTT+CGG 0.394553 1:+5705404 None:intergenic
AACAGATGATAGTGGTAGAT+TGG 0.396815 1:-5705392 MsG0180000415.01.T01:CDS
AGACGTTTCACAACATCTTC+AGG 0.410153 1:+5704030 None:intergenic
GTTCTCAGGATGTAGAAATT+AGG 0.411639 1:-5704949 MsG0180000415.01.T01:CDS
GAATTCATCGTTGACTTAAG+AGG 0.416931 1:-5704176 MsG0180000415.01.T01:CDS
GTGAAACGTCTCATGGATAA+TGG 0.437271 1:-5704018 MsG0180000415.01.T01:CDS
GAAGACGTGGAAGAGAGATC+TGG 0.444419 1:-5704842 MsG0180000415.01.T01:CDS
CTCCTCAGGAGTTTGAAATT+AGG 0.444891 1:-5705108 MsG0180000415.01.T01:CDS
TTCTTCCTGTGAGACTGCGC+CGG 0.450698 1:+5705430 None:intergenic
TGGAGGGCTAGTTGGTTCTC+AGG 0.460306 1:-5704963 MsG0180000415.01.T01:CDS
AGAAGAACAAGAAGAAGGAA+AGG 0.471884 1:-5705177 MsG0180000415.01.T01:CDS
TCTTCCTGTGAGACTGCGCC+GGG 0.473020 1:+5705431 None:intergenic
GAGAAGCGTGATAAGAAAGA+TGG 0.475565 1:-5705301 MsG0180000415.01.T01:CDS
GTTGTCAGCAGAGACAAAAT+TGG 0.479329 1:+5705537 None:intergenic
AAATGAAGTGGGGAGTGAAA+AGG 0.480460 1:-5705074 MsG0180000415.01.T01:CDS
CGAGAAGAAGAACAAGAAGA+AGG 0.484309 1:-5705182 MsG0180000415.01.T01:CDS
AGTGAAAATGGAGGGCTAGT+TGG 0.489017 1:-5704971 MsG0180000415.01.T01:CDS
GGAGATAGCGTAAAGAAGAA+TGG 0.492043 1:-5705259 MsG0180000415.01.T01:CDS
AAGACGTGGAAGAGAGATCT+GGG 0.496807 1:-5704841 MsG0180000415.01.T01:CDS
TTTGCAATGTAGAATACTGC+TGG 0.499869 1:-5704060 MsG0180000415.01.T01:intron
ACAGATGATAGTGGTAGATT+GGG 0.501389 1:-5705391 MsG0180000415.01.T01:CDS
CGAGCTCAATCAGCTTCATA+AGG 0.501434 1:-5705461 MsG0180000415.01.T01:CDS
CTCATGGATAATGGATTTCA+CGG 0.505832 1:-5704009 MsG0180000415.01.T01:CDS
GAATGGAAGTGAGTTAGGTC+AGG 0.510402 1:-5705242 MsG0180000415.01.T01:CDS
GTTCGGAGTGATGTTAAACT+TGG 0.516279 1:-5705358 MsG0180000415.01.T01:CDS
GTTAAACTTGGTCGTGAAGT+TGG 0.522028 1:-5705346 MsG0180000415.01.T01:CDS
ACAATATCATTGCTTGTGCC+TGG 0.524408 1:-5703982 MsG0180000415.01.T01:CDS
TGGAGGGATAGTTCCTCCTC+AGG 0.526446 1:-5705122 MsG0180000415.01.T01:CDS
TTAACCCGGCGCAGTCTCAC+AGG 0.530601 1:-5705435 MsG0180000415.01.T01:CDS
TTATCTCCTTCGTGCATCCA+CGG 0.536881 1:-5705491 MsG0180000415.01.T01:CDS
GAGAATGTGAAGGTTGAAAG+TGG 0.538487 1:-5705142 MsG0180000415.01.T01:CDS
GACTCAATCATGAGTGTACC+AGG 0.546259 1:+5703964 None:intergenic
ATGTGAAGGTTGAAAGTGGA+GGG 0.546588 1:-5705138 MsG0180000415.01.T01:CDS
AGACGGAGCAAAGGAAGAAG+AGG 0.546821 1:-5704871 MsG0180000415.01.T01:CDS
TGAAGTTGGTGGTTCTATCG+TGG 0.560407 1:-5705332 MsG0180000415.01.T01:CDS
GTCTACTGAAAGTGAAAGCA+AGG 0.560958 1:-5703944 MsG0180000415.01.T01:CDS
GAAGTTGGTGGTTCTATCGT+GGG 0.565559 1:-5705331 MsG0180000415.01.T01:CDS
GAGTTAGGTCAGGACGATGA+AGG 0.567638 1:-5705232 MsG0180000415.01.T01:CDS
TAGAGGGAAAGACGGAGCAA+AGG 0.575268 1:-5704880 MsG0180000415.01.T01:CDS
GATTGGGCGAAAGTTCTGTT+CGG 0.577864 1:-5705375 MsG0180000415.01.T01:CDS
GAATAAATTAAATGTTGTAG+AGG 0.578592 1:-5704897 MsG0180000415.01.T01:CDS
ATGCATATATGGACCTGCCT+AGG 0.579380 1:-5703920 None:intergenic
ACGAGAACAAGACAAAGAAG+TGG 0.581117 1:-5705020 MsG0180000415.01.T01:CDS
AATAAATTAAATGTTGTAGA+GGG 0.581397 1:-5704896 MsG0180000415.01.T01:CDS
GACGATGAAGGAAGAACGGA+GGG 0.595325 1:-5705220 MsG0180000415.01.T01:CDS
GACCTAATTTCAAACTCCTG+AGG 0.598620 1:+5705106 None:intergenic
TTTAGAGGTTGACAATGCGA+AGG 0.599575 1:-5705044 MsG0180000415.01.T01:CDS
AAACTTGGTCGTGAAGTTGG+TGG 0.600549 1:-5705343 MsG0180000415.01.T01:CDS
GCTTCATAAGGAGCTTAACC+CGG 0.601455 1:-5705449 MsG0180000415.01.T01:CDS
TTGCAATGTAGAATACTGCT+GGG 0.605364 1:-5704059 MsG0180000415.01.T01:intron
AGATGTTGTGAAACGTCTCA+TGG 0.605574 1:-5704025 MsG0180000415.01.T01:CDS
AAATGTTGTAGAGGGAAAGA+CGG 0.613233 1:-5704888 MsG0180000415.01.T01:CDS
AGCCACACAACAGATGATAG+TGG 0.614962 1:-5705400 MsG0180000415.01.T01:CDS
TCAGGACGATGAAGGAAGAA+CGG 0.621358 1:-5705224 MsG0180000415.01.T01:CDS
TACCACTATCATCTGTTGTG+TGG 0.623536 1:+5705398 None:intergenic
ATTGAGCTCGTTGAAAGCCG+TGG 0.632164 1:+5705474 None:intergenic
CTAATTTCAAACTCCTGAGG+AGG 0.638743 1:+5705109 None:intergenic
GAAGAGGAAGAATGAAGACG+TGG 0.639348 1:-5704855 MsG0180000415.01.T01:CDS
TTAGAGGTTGACAATGCGAA+GGG 0.641060 1:-5705043 MsG0180000415.01.T01:CDS
GGACGATGAAGGAAGAACGG+AGG 0.651421 1:-5705221 MsG0180000415.01.T01:CDS
AGCTATATATGTATGTGTGA+AGG 0.655290 1:-5705655 None:intergenic
GTTGGTGGTTCTATCGTGGG+TGG 0.664797 1:-5705328 MsG0180000415.01.T01:CDS
TGTAGAAGGTGAGAATGTGA+AGG 0.671362 1:-5705152 MsG0180000415.01.T01:CDS
GAAAATGAAAAGAAAACACG+AGG 0.679170 1:-5704804 MsG0180000415.01.T01:CDS
TGAAAGCCGTGGATGCACGA+AGG 0.685445 1:+5705485 None:intergenic
GTGTGAAGAGTGAAAATGGA+GGG 0.692434 1:-5704979 MsG0180000415.01.T01:CDS
AATGTGAAGGTTGAAAGTGG+AGG 0.718185 1:-5705139 MsG0180000415.01.T01:CDS
AGACGTGGAAGAGAGATCTG+GGG 0.725469 1:-5704840 MsG0180000415.01.T01:CDS
AAAATGAAAAGAAAACACGA+GGG 0.737551 1:-5704803 MsG0180000415.01.T01:intron
GGTGTGAAGAGTGAAAATGG+AGG 0.782075 1:-5704980 MsG0180000415.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATAATTATATGATTAAT+TGG + Chr1:5705455-5705474 None:intergenic 10.0%
!! AATAAATTAAATGTTGTAGA+GGG - Chr1:5704668-5704687 MsG0180000415.01.T01:intron 15.0%
!! CATTCACAAAAACAAAATAT+AGG + Chr1:5705145-5705164 None:intergenic 20.0%
!! GAATAAATTAAATGTTGTAG+AGG - Chr1:5704667-5704686 MsG0180000415.01.T01:intron 20.0%
!!! AATCTTTTTCAATTTTGATC+AGG - Chr1:5704874-5704893 MsG0180000415.01.T01:CDS 20.0%
! AAAATGAAAAGAAAACACGA+GGG - Chr1:5704761-5704780 MsG0180000415.01.T01:intron 25.0%
! AAACAACTTCAATCATCAAA+TGG + Chr1:5705427-5705446 None:intergenic 25.0%
! GAAAAAATGAAAACGATTAC+AGG - Chr1:5703951-5703970 MsG0180000415.01.T01:CDS 25.0%
! GTACTATCATATAACATAAG+AGG - Chr1:5704940-5704959 MsG0180000415.01.T01:CDS 25.0%
! TAAAGTATGAATGAAAACCA+AGG + Chr1:5705305-5705324 None:intergenic 25.0%
! TGACAAAAACAATGTAATAG+AGG + Chr1:5704982-5705001 None:intergenic 25.0%
!! ATGATAAGTTTTCACTTGTA+AGG - Chr1:5705073-5705092 MsG0180000415.01.T01:CDS 25.0%
!!! ACATTGTTTTTGTCATACTA+GGG - Chr1:5704987-5705006 MsG0180000415.01.T01:CDS 25.0%
!!! TACATTGTTTTTGTCATACT+AGG - Chr1:5704986-5705005 MsG0180000415.01.T01:CDS 25.0%
AGATGCAGTGTTATAAGTTA+CGG - Chr1:5705198-5705217 MsG0180000415.01.T01:CDS 30.0%
GAAAATGAAAAGAAAACACG+AGG - Chr1:5704760-5704779 MsG0180000415.01.T01:intron 30.0%
GGAAAGAAGAAACTTGAATT+TGG - Chr1:5704284-5704303 MsG0180000415.01.T01:intron 30.0%
GTGGACAAAAAACTAAGTAA+TGG - Chr1:5704563-5704582 MsG0180000415.01.T01:intron 30.0%
TCGAAAAAGAGAAATGAAGT+GGG - Chr1:5704479-5704498 MsG0180000415.01.T01:intron 30.0%
TGAAAAGGAGAAGAATTTAG+AGG - Chr1:5704505-5704524 MsG0180000415.01.T01:intron 30.0%
TGTTTACTAGATTCACTTGA+TGG - Chr1:5705027-5705046 MsG0180000415.01.T01:CDS 30.0%
!!! CATTTTTTCTTCTGCTTTCA+CGG + Chr1:5703940-5703959 None:intergenic 30.0%
AAATGTTGTAGAGGGAAAGA+CGG - Chr1:5704676-5704695 MsG0180000415.01.T01:intron 35.0%
AAGAAGAATGGAAGTGAGTT+AGG - Chr1:5704317-5704336 MsG0180000415.01.T01:intron 35.0%
AATGGTGTGAAGAGTGAAAA+TGG - Chr1:5704581-5704600 MsG0180000415.01.T01:intron 35.0%
AGAAGAACAAGAAGAAGGAA+AGG - Chr1:5704387-5704406 MsG0180000415.01.T01:intron 35.0%
CATATATGATCCTAGGAACA+CGG + Chr1:5705277-5705296 None:intergenic 35.0%
CGAAAAAGAGAAATGAAGTG+GGG - Chr1:5704480-5704499 MsG0180000415.01.T01:intron 35.0%
CGAGGGTTAAGCTTAAATTT+AGG - Chr1:5704778-5704797 MsG0180000415.01.T01:intron 35.0%
CTAGGAACACGGAAAAAAAT+TGG + Chr1:5705266-5705285 None:intergenic 35.0%
GAAAGCAAGGTATGCATATA+TGG - Chr1:5705633-5705652 MsG0180000415.01.T01:CDS 35.0%
GACTTCGCAGAAAAGAATTA+GGG + Chr1:5705350-5705369 None:intergenic 35.0%
GGATCATATATGATGAACCT+TGG - Chr1:5705285-5705304 MsG0180000415.01.T01:CDS 35.0%
GGTTCATCATATATGATCCT+AGG + Chr1:5705284-5705303 None:intergenic 35.0%
GTCGAAAAAGAGAAATGAAG+TGG - Chr1:5704478-5704497 MsG0180000415.01.T01:intron 35.0%
GTTATTTATGACTTCCTCCT+CGG + Chr1:5705230-5705249 None:intergenic 35.0%
GTTCTCAGGATGTAGAAATT+AGG - Chr1:5704615-5704634 MsG0180000415.01.T01:intron 35.0%
TGACTTCGCAGAAAAGAATT+AGG + Chr1:5705351-5705370 None:intergenic 35.0%
TTGCAATGTAGAATACTGCT+GGG - Chr1:5705505-5705524 MsG0180000415.01.T01:CDS 35.0%
TTGTAAGGTTGCTTACAATG+TGG - Chr1:5705088-5705107 MsG0180000415.01.T01:CDS 35.0%
TTTGCAATGTAGAATACTGC+TGG - Chr1:5705504-5705523 MsG0180000415.01.T01:CDS 35.0%
! AATTTTGTCTCTGCTGACAA+CGG - Chr1:5704029-5704048 MsG0180000415.01.T01:CDS 35.0%
! ATCAGGAATTTTCACTTGCA+AGG - Chr1:5704891-5704910 MsG0180000415.01.T01:CDS 35.0%
! TGATGGCTGTTAAATCGTTT+TGG - Chr1:5705044-5705063 MsG0180000415.01.T01:CDS 35.0%
!! AACAGATGATAGTGGTAGAT+TGG - Chr1:5704172-5704191 MsG0180000415.01.T01:CDS 35.0%
!! ACAGATGATAGTGGTAGATT+GGG - Chr1:5704173-5704192 MsG0180000415.01.T01:CDS 35.0%
!! CTCATGGATAATGGATTTCA+CGG - Chr1:5705555-5705574 MsG0180000415.01.T01:CDS 35.0%
!! GAATTCATCGTTGACTTAAG+AGG - Chr1:5705388-5705407 MsG0180000415.01.T01:CDS 35.0%
!!! CAATTTTTTTCCGTGTTCCT+AGG - Chr1:5705264-5705283 MsG0180000415.01.T01:CDS 35.0%
AAATGAAGTGGGGAGTGAAA+AGG - Chr1:5704490-5704509 MsG0180000415.01.T01:intron 40.0%
AATGTGAAGGTTGAAAGTGG+AGG - Chr1:5704425-5704444 MsG0180000415.01.T01:intron 40.0%
ACAATATCATTGCTTGTGCC+TGG - Chr1:5705582-5705601 MsG0180000415.01.T01:CDS 40.0%
ACGAGAACAAGACAAAGAAG+TGG - Chr1:5704544-5704563 MsG0180000415.01.T01:intron 40.0%
AGACGTTTCACAACATCTTC+AGG + Chr1:5705537-5705556 None:intergenic 40.0%
AGATGTTGTGAAACGTCTCA+TGG - Chr1:5705539-5705558 MsG0180000415.01.T01:CDS 40.0%
ATGTGAAGGTTGAAAGTGGA+GGG - Chr1:5704426-5704445 MsG0180000415.01.T01:intron 40.0%
CGAGAAGAAGAACAAGAAGA+AGG - Chr1:5704382-5704401 MsG0180000415.01.T01:intron 40.0%
CTAATTTCAAACTCCTGAGG+AGG + Chr1:5704458-5704477 None:intergenic 40.0%
GACCTAATTTCAAACTCCTG+AGG + Chr1:5704461-5704480 None:intergenic 40.0%
GAGAATGTGAAGGTTGAAAG+TGG - Chr1:5704422-5704441 MsG0180000415.01.T01:intron 40.0%
GGAGATAGCGTAAAGAAGAA+TGG - Chr1:5704305-5704324 MsG0180000415.01.T01:intron 40.0%
GTCTACTGAAAGTGAAAGCA+AGG - Chr1:5705620-5705639 MsG0180000415.01.T01:CDS 40.0%
GTGAAACGTCTCATGGATAA+TGG - Chr1:5705546-5705565 MsG0180000415.01.T01:CDS 40.0%
GTGTGAAGAGTGAAAATGGA+GGG - Chr1:5704585-5704604 MsG0180000415.01.T01:intron 40.0%
GTTAAACTTGGTCGTGAAGT+TGG - Chr1:5704218-5704237 MsG0180000415.01.T01:intron 40.0%
GTTCGGAGTGATGTTAAACT+TGG - Chr1:5704206-5704225 MsG0180000415.01.T01:intron 40.0%
GTTGTCAGCAGAGACAAAAT+TGG + Chr1:5704030-5704049 None:intergenic 40.0%
TACCACTATCATCTGTTGTG+TGG + Chr1:5704169-5704188 None:intergenic 40.0%
TATCATCTGTTGTGTGGCTT+CGG + Chr1:5704163-5704182 None:intergenic 40.0%
TGTAGAAGGTGAGAATGTGA+AGG - Chr1:5704412-5704431 MsG0180000415.01.T01:intron 40.0%
TTAGAGGTTGACAATGCGAA+GGG - Chr1:5704521-5704540 MsG0180000415.01.T01:intron 40.0%
TTTAGAGGTTGACAATGCGA+AGG - Chr1:5704520-5704539 MsG0180000415.01.T01:intron 40.0%
! AAGAAGGAAAGGAGTGTAGA+AGG - Chr1:5704398-5704417 MsG0180000415.01.T01:intron 40.0%
! CGAAAAAGAAGCATGAAGCT+GGG - Chr1:5704639-5704658 MsG0180000415.01.T01:intron 40.0%
! CTCCTCAGGAGTTTGAAATT+AGG - Chr1:5704456-5704475 MsG0180000415.01.T01:intron 40.0%
! GAGAAGCGTGATAAGAAAGA+TGG - Chr1:5704263-5704282 MsG0180000415.01.T01:intron 40.0%
! TCGAAAAAGAAGCATGAAGC+TGG - Chr1:5704638-5704657 MsG0180000415.01.T01:intron 40.0%
!! CGTTGACTTAAGAGGCTTTA+AGG - Chr1:5705396-5705415 MsG0180000415.01.T01:CDS 40.0%
AAACTTGGTCGTGAAGTTGG+TGG - Chr1:5704221-5704240 MsG0180000415.01.T01:intron 45.0%
AAGACGTGGAAGAGAGATCT+GGG - Chr1:5704723-5704742 MsG0180000415.01.T01:intron 45.0%
AGCCACACAACAGATGATAG+TGG - Chr1:5704164-5704183 MsG0180000415.01.T01:intron 45.0%
ATAAGTTACGGAATCAGCCG+AGG - Chr1:5705210-5705229 MsG0180000415.01.T01:CDS 45.0%
CGAGCTCAATCAGCTTCATA+AGG - Chr1:5704103-5704122 MsG0180000415.01.T01:intron 45.0%
GAAGAGGAAGAATGAAGACG+TGG - Chr1:5704709-5704728 MsG0180000415.01.T01:intron 45.0%
GAATGGAAGTGAGTTAGGTC+AGG - Chr1:5704322-5704341 MsG0180000415.01.T01:intron 45.0%
GACTCAATCATGAGTGTACC+AGG + Chr1:5705603-5705622 None:intergenic 45.0%
GATTGGGCGAAAGTTCTGTT+CGG - Chr1:5704189-5704208 MsG0180000415.01.T01:intron 45.0%
GCTTCATAAGGAGCTTAACC+CGG - Chr1:5704115-5704134 MsG0180000415.01.T01:intron 45.0%
GGTGTGAAGAGTGAAAATGG+AGG - Chr1:5704584-5704603 MsG0180000415.01.T01:intron 45.0%
TCAGGACGATGAAGGAAGAA+CGG - Chr1:5704340-5704359 MsG0180000415.01.T01:intron 45.0%
TTATCTCCTTCGTGCATCCA+CGG - Chr1:5704073-5704092 MsG0180000415.01.T01:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + Chr1:5704831-5704850 None:intergenic 45.0%
! AGTGAAAATGGAGGGCTAGT+TGG - Chr1:5704593-5704612 MsG0180000415.01.T01:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + Chr1:5704832-5704851 None:intergenic 45.0%
!! GAAGTTGGTGGTTCTATCGT+GGG - Chr1:5704233-5704252 MsG0180000415.01.T01:intron 45.0%
!! TGAAGTTGGTGGTTCTATCG+TGG - Chr1:5704232-5704251 MsG0180000415.01.T01:intron 45.0%
AGACGGAGCAAAGGAAGAAG+AGG - Chr1:5704693-5704712 MsG0180000415.01.T01:intron 50.0%
AGACGTGGAAGAGAGATCTG+GGG - Chr1:5704724-5704743 MsG0180000415.01.T01:intron 50.0%
ATTGAGCTCGTTGAAAGCCG+TGG + Chr1:5704093-5704112 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - Chr1:5704830-5704849 MsG0180000415.01.T01:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG + Chr1:5704827-5704846 None:intergenic 50.0%
GAAGACGTGGAAGAGAGATC+TGG - Chr1:5704722-5704741 MsG0180000415.01.T01:intron 50.0%
GACGATGAAGGAAGAACGGA+GGG - Chr1:5704344-5704363 MsG0180000415.01.T01:intron 50.0%
GAGTTAGGTCAGGACGATGA+AGG - Chr1:5704332-5704351 MsG0180000415.01.T01:intron 50.0%
TAGAGGGAAAGACGGAGCAA+AGG - Chr1:5704684-5704703 MsG0180000415.01.T01:intron 50.0%
TTGCAAGGTTGCTTACAGCG+TGG - Chr1:5704906-5704925 MsG0180000415.01.T01:CDS 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + Chr1:5704833-5704852 None:intergenic 50.0%
AGTTACGGAATCAGCCGAGG+AGG - Chr1:5705213-5705232 MsG0180000415.01.T01:CDS 55.0%
CGACCCCACTTAGTGGGATA+AGG - Chr1:5704825-5704844 MsG0180000415.01.T01:CDS 55.0%
GATAGCCGACCCCACTTAGT+GGG - Chr1:5704819-5704838 MsG0180000415.01.T01:CDS 55.0%
GGACGATGAAGGAAGAACGG+AGG - Chr1:5704343-5704362 MsG0180000415.01.T01:intron 55.0%
TGAAAGCCGTGGATGCACGA+AGG + Chr1:5704082-5704101 None:intergenic 55.0%
TGATAGCCGACCCCACTTAG+TGG - Chr1:5704818-5704837 MsG0180000415.01.T01:CDS 55.0%
TGGAGGGATAGTTCCTCCTC+AGG - Chr1:5704442-5704461 MsG0180000415.01.T01:intron 55.0%
TTCTTCCTGTGAGACTGCGC+CGG + Chr1:5704137-5704156 None:intergenic 55.0%
!! GTTGGTGGTTCTATCGTGGG+TGG - Chr1:5704236-5704255 MsG0180000415.01.T01:intron 55.0%
!! TGGAGGGCTAGTTGGTTCTC+AGG - Chr1:5704601-5704620 MsG0180000415.01.T01:intron 55.0%
TCTTCCTGTGAGACTGCGCC+GGG + Chr1:5704136-5704155 None:intergenic 60.0%
TTAACCCGGCGCAGTCTCAC+AGG - Chr1:5704129-5704148 MsG0180000415.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 5703921 5705665 5703921 ID=MsG0180000415.01;Name=MsG0180000415.01
Chr1 mRNA 5703921 5705665 5703921 ID=MsG0180000415.01.T01;Parent=MsG0180000415.01;Name=MsG0180000415.01.T01;_AED=0.48;_eAED=0.59;_QI=0|0|0|1|1|1|3|0|349
Chr1 exon 5704804 5705665 5704804 ID=MsG0180000415.01.T01:exon:28133;Parent=MsG0180000415.01.T01
Chr1 exon 5704169 5704206 5704169 ID=MsG0180000415.01.T01:exon:28134;Parent=MsG0180000415.01.T01
Chr1 exon 5703921 5704070 5703921 ID=MsG0180000415.01.T01:exon:28135;Parent=MsG0180000415.01.T01
Chr1 CDS 5704804 5705665 5704804 ID=MsG0180000415.01.T01:cds;Parent=MsG0180000415.01.T01
Chr1 CDS 5704169 5704206 5704169 ID=MsG0180000415.01.T01:cds;Parent=MsG0180000415.01.T01
Chr1 CDS 5703921 5704070 5703921 ID=MsG0180000415.01.T01:cds;Parent=MsG0180000415.01.T01
Gene Sequence

>MsG0180000415.01.T01

ATGTGTGAAGGTGAAACCGTGAAAGCAGAAGAAAAAATGAAAACGATTACAGGACATTGTGAATCATCTAAAGATATTTCACTTTCAAAAGCTTCAAAAATTCTCTCCAATTTTGTCTCTGCTGACAACGGTGCTTCTCATGTCATCAATGCTTATCTCCTTCGTGCATCCACGGCTTTCAACGAGCTCAATCAGCTTCATAAGGAGCTTAACCCGGCGCAGTCTCACAGGAAGAATCGCCGAAGCCACACAACAGATGATAGTGGTAGATTGGGCGAAAGTTCTGTTCGGAGTGATGTTAAACTTGGTCGTGAAGTTGGTGGTTCTATCGTGGGTGGAAGTGAGAAGCGTGATAAGAAAGATGGAAAGAAGAAACTTGAATTTGGAGATAGCGTAAAGAAGAATGGAAGTGAGTTAGGTCAGGACGATGAAGGAAGAACGGAGGGAAAGAAGCAAAAGAGCGAGAAGAAGAACAAGAAGAAGGAAAGGAGTGTAGAAGGTGAGAATGTGAAGGTTGAAAGTGGAGGGATAGTTCCTCCTCAGGAGTTTGAAATTAGGTCGAAAAAGAGAAATGAAGTGGGGAGTGAAAAGGAGAAGAATTTAGAGGTTGACAATGCGAAGGGACGAGAACAAGACAAAGAAGTGGACAAAAAACTAAGTAATGGTGTGAAGAGTGAAAATGGAGGGCTAGTTGGTTCTCAGGATGTAGAAATTAGGTCGAAAAAGAAGCATGAAGCTGGGAGTGAGAATAAATTAAATGTTGTAGAGGGAAAGACGGAGCAAAGGAAGAAGAGGAAGAATGAAGACGTGGAAGAGAGATCTGGGGAGAAGTCTAAGAAGAAAATGAAAAGAAAACACGAGGTTGCTCATGAATTCATCGTTGACTTAAGAGGCTTTAAGAATACTGCTGGGATAGAGCCTGAAGATGTTGTGAAACGTCTCATGGATAATGGATTTCACGGACAAACAATATCATTGCTTGTGCCTGGTACACTCATGATTGAGTCTACTGAAAGTGAAAGCAAGGTATGCATATATGGACCTGCCTAG
Protein sequence

>MsG0180000415.01.T01

MCEGETVKAEEKMKTITGHCESSKDISLSKASKILSNFVSADNGASHVINAYLLRASTAFNELNQLHKELNPAQSHRKNRRSHTTDDSGRLGESSVRSDVKLGREVGGSIVGGSEKRDKKDGKKKLEFGDSVKKNGSELGQDDEGRTEGKKQKSEKKNKKKERSVEGENVKVESGGIVPPQEFEIRSKKRNEVGSEKEKNLEVDNAKGREQDKEVDKKLSNGVKSENGGLVGSQDVEIRSKKKHEAGSENKLNVVEGKTEQRKKRKNEDVEERSGEKSKKKMKRKHEVAHEFIVDLRGFKNTAGIEPEDVVKRLMDNGFHGQTISLLVPGTLMIESTESESKVCIYGPA*