Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014142.01.T01 | XP_013449664.1 | 87.421 | 159 | 20 | 0 | 1 | 159 | 1 | 159 | 4.18E-98 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014142.01.T01 | Q9LNT9 | 70 | 160 | 43 | 1 | 5 | 159 | 4 | 163 | 3.29E-77 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014142.01.T01 | A0A072U1W2 | 87.421 | 159 | 20 | 0 | 1 | 159 | 1 | 159 | 1.99e-98 | 290 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000235.01 | MsG0380014142.01 | 0.805219 | 1.483614e-49 | 7.804982e-47 |
| MsG0180000415.01 | MsG0380014142.01 | 0.813058 | 3.101047e-51 | 2.004283e-48 |
| MsG0180001312.01 | MsG0380014142.01 | 0.801605 | 8.320988e-49 | 3.990418e-46 |
| MsG0180001663.01 | MsG0380014142.01 | 0.801461 | 8.908678e-49 | 4.256897e-46 |
| MsG0180002100.01 | MsG0380014142.01 | 0.801052 | 1.080054e-48 | 5.108245e-46 |
| MsG0180002955.01 | MsG0380014142.01 | 0.805371 | 1.378767e-49 | 7.281820e-47 |
| MsG0180003671.01 | MsG0380014142.01 | 0.823094 | 1.666492e-53 | 1.421092e-50 |
| MsG0180004449.01 | MsG0380014142.01 | 0.808690 | 2.735661e-50 | 1.574466e-47 |
| MsG0180006016.01 | MsG0380014142.01 | 0.811430 | 7.029665e-51 | 4.350560e-48 |
| MsG0180006138.01 | MsG0380014142.01 | 0.813682 | 2.261455e-51 | 1.486666e-48 |
| MsG0280010784.01 | MsG0380014142.01 | 0.802485 | 5.486243e-49 | 2.690627e-46 |
| MsG0280011131.01 | MsG0380014142.01 | 0.806902 | 6.563245e-50 | 3.605060e-47 |
| MsG0380011870.01 | MsG0380014142.01 | 0.801429 | 9.043536e-49 | 4.317790e-46 |
| MsG0380014142.01 | MsG0480023427.01 | 0.829554 | 4.824175e-55 | 4.953879e-52 |
| MsG0380014142.01 | MsG0580024632.01 | 0.806707 | 7.219467e-50 | 3.945471e-47 |
| MsG0380014142.01 | MsG0580025328.01 | 0.814668 | 1.370217e-51 | 9.251047e-49 |
| MsG0380014142.01 | MsG0580027688.01 | 0.800652 | 1.303766e-48 | 6.103772e-46 |
| MsG0380014142.01 | MsG0680030351.01 | 0.843657 | 1.224599e-58 | 1.929411e-55 |
| MsG0380014142.01 | MsG0680030366.01 | 0.805556 | 1.260643e-49 | 6.689617e-47 |
| MsG0380014142.01 | MsG0780038092.01 | 0.803933 | 2.751521e-49 | 1.400522e-46 |
| MsG0380014142.01 | MsG0880042294.01 | 0.803220 | 3.868116e-49 | 1.932931e-46 |
| MsG0380014142.01 | MsG0880042314.01 | 0.805304 | 1.423937e-49 | 7.507393e-47 |
| MsG0380014142.01 | MsG0880042404.01 | 0.814716 | 1.336885e-51 | 9.038154e-49 |
| MsG0380014142.01 | MsG0880043625.01 | 0.803489 | 3.401347e-49 | 1.711551e-46 |
| MsG0380014142.01 | MsG0880046532.01 | 0.800367 | 1.490233e-48 | 6.926565e-46 |
| MsG0380014142.01 | MsG0880047019.01 | 0.807687 | 4.476001e-50 | 2.509189e-47 |
| MsG0280007585.01 | MsG0380014142.01 | 0.801891 | 7.268846e-49 | 3.511552e-46 |
| MsG0280009024.01 | MsG0380014142.01 | 0.806276 | 8.897658e-50 | 4.809671e-47 |
| MsG0280009646.01 | MsG0380014142.01 | 0.833499 | 5.150490e-56 | 5.942155e-53 |
| MsG0280010531.01 | MsG0380014142.01 | 0.800068 | 1.713963e-48 | 7.906202e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014142.01.T01 | MTR_7g094120 | 87.421 | 159 | 20 | 0 | 1 | 159 | 1 | 159 | 5.06e-102 | 290 |
| MsG0380014142.01.T01 | MTR_7g021400 | 82.390 | 159 | 25 | 2 | 1 | 159 | 1 | 156 | 9.10e-85 | 246 |
| MsG0380014142.01.T01 | MTR_7g094150 | 79.874 | 159 | 29 | 2 | 1 | 159 | 1 | 156 | 8.51e-82 | 238 |
| MsG0380014142.01.T01 | MTR_7g094280 | 73.125 | 160 | 40 | 2 | 1 | 159 | 1 | 158 | 8.80e-81 | 236 |
| MsG0380014142.01.T01 | MTR_5g022710 | 77.358 | 159 | 32 | 2 | 1 | 159 | 1 | 155 | 6.81e-79 | 231 |
| MsG0380014142.01.T01 | MTR_3g110048 | 72.671 | 161 | 39 | 3 | 1 | 159 | 1 | 158 | 1.39e-78 | 230 |
| MsG0380014142.01.T01 | MTR_7g094170 | 77.987 | 159 | 32 | 2 | 1 | 159 | 1 | 156 | 1.42e-78 | 230 |
| MsG0380014142.01.T01 | MTR_5g022730 | 76.101 | 159 | 34 | 2 | 1 | 159 | 1 | 155 | 1.65e-77 | 227 |
| MsG0380014142.01.T01 | MTR_7g021380 | 77.358 | 159 | 33 | 2 | 1 | 159 | 1 | 156 | 2.32e-76 | 224 |
| MsG0380014142.01.T01 | MTR_4g032450 | 68.790 | 157 | 46 | 2 | 4 | 159 | 21 | 175 | 1.83e-75 | 223 |
| MsG0380014142.01.T01 | MTR_4g032400 | 69.811 | 159 | 45 | 2 | 2 | 159 | 7 | 163 | 1.40e-73 | 218 |
| MsG0380014142.01.T01 | MTR_7g094310 | 68.125 | 160 | 38 | 3 | 1 | 159 | 1 | 148 | 6.73e-72 | 213 |
| MsG0380014142.01.T01 | MTR_8g056060 | 66.875 | 160 | 49 | 3 | 1 | 159 | 1 | 157 | 8.05e-69 | 206 |
| MsG0380014142.01.T01 | MTR_4g032510 | 63.975 | 161 | 48 | 3 | 1 | 159 | 1 | 153 | 4.91e-68 | 203 |
| MsG0380014142.01.T01 | MTR_4g032500 | 61.875 | 160 | 52 | 2 | 1 | 159 | 1 | 152 | 2.74e-67 | 201 |
| MsG0380014142.01.T01 | MTR_8g468480 | 65.000 | 160 | 51 | 3 | 1 | 159 | 1 | 156 | 2.16e-65 | 197 |
| MsG0380014142.01.T01 | MTR_5g085030 | 61.635 | 159 | 56 | 3 | 1 | 158 | 1 | 155 | 1.96e-63 | 192 |
| MsG0380014142.01.T01 | MTR_4g032460 | 65.000 | 160 | 45 | 3 | 1 | 159 | 1 | 150 | 4.10e-63 | 191 |
| MsG0380014142.01.T01 | MTR_4g033455 | 59.236 | 157 | 61 | 2 | 3 | 159 | 7 | 160 | 5.21e-62 | 188 |
| MsG0380014142.01.T01 | MTR_4g017860 | 52.062 | 194 | 52 | 3 | 7 | 159 | 27 | 220 | 2.23e-57 | 179 |
| MsG0380014142.01.T01 | MTR_4g033460 | 59.441 | 143 | 55 | 2 | 3 | 145 | 7 | 146 | 9.66e-55 | 173 |
| MsG0380014142.01.T01 | MTR_4g033460 | 72.973 | 74 | 18 | 1 | 42 | 115 | 161 | 232 | 7.19e-29 | 106 |
| MsG0380014142.01.T01 | MTR_5g082340 | 58.125 | 160 | 51 | 3 | 1 | 159 | 1 | 145 | 1.22e-52 | 164 |
| MsG0380014142.01.T01 | MTR_1g099870 | 75.962 | 104 | 21 | 2 | 58 | 159 | 2 | 103 | 3.06e-51 | 159 |
| MsG0380014142.01.T01 | MTR_4g021390 | 55.063 | 158 | 66 | 2 | 2 | 159 | 3 | 155 | 2.24e-50 | 159 |
| MsG0380014142.01.T01 | MTR_8g089730 | 65.600 | 125 | 24 | 1 | 35 | 159 | 1 | 106 | 1.91e-48 | 152 |
| MsG0380014142.01.T01 | MTR_7g094320 | 50.943 | 159 | 36 | 1 | 1 | 159 | 1 | 117 | 1.38e-45 | 145 |
| MsG0380014142.01.T01 | MTR_4g032420 | 55.814 | 129 | 40 | 3 | 32 | 159 | 38 | 150 | 1.75e-44 | 144 |
| MsG0380014142.01.T01 | MTR_7g094410 | 53.846 | 156 | 33 | 4 | 1 | 117 | 1 | 156 | 1.48e-41 | 137 |
| MsG0380014142.01.T01 | MTR_4g032470 | 49.315 | 146 | 28 | 2 | 15 | 159 | 34 | 134 | 8.18e-40 | 131 |
| MsG0380014142.01.T01 | MTR_4g131980 | 55.797 | 138 | 48 | 6 | 1 | 136 | 1 | 127 | 1.72e-37 | 125 |
| MsG0380014142.01.T01 | MTR_7g094360 | 44.509 | 173 | 44 | 3 | 1 | 122 | 1 | 172 | 9.86e-37 | 125 |
| MsG0380014142.01.T01 | MTR_4g127240 | 63.810 | 105 | 30 | 4 | 41 | 143 | 26 | 124 | 4.36e-36 | 121 |
| MsG0380014142.01.T01 | MTR_7g006370 | 50.694 | 144 | 60 | 3 | 2 | 145 | 3 | 135 | 5.55e-36 | 121 |
| MsG0380014142.01.T01 | MTR_7g094350 | 43.258 | 178 | 45 | 4 | 1 | 125 | 1 | 175 | 5.26e-32 | 113 |
| MsG0380014142.01.T01 | MTR_8g056090 | 46.541 | 159 | 49 | 8 | 1 | 157 | 1 | 125 | 2.62e-28 | 102 |
| MsG0380014142.01.T01 | MTR_4g119422 | 42.282 | 149 | 77 | 2 | 3 | 149 | 227 | 368 | 6.42e-28 | 106 |
| MsG0380014142.01.T01 | MTR_1g112590 | 35.897 | 156 | 80 | 4 | 11 | 149 | 3 | 155 | 1.54e-26 | 98.2 |
| MsG0380014142.01.T01 | MTR_4g032520 | 46.281 | 121 | 38 | 2 | 31 | 150 | 2 | 96 | 1.41e-25 | 95.1 |
| MsG0380014142.01.T01 | MTR_7g071200 | 62.319 | 69 | 25 | 1 | 92 | 159 | 4 | 72 | 7.17e-25 | 91.7 |
| MsG0380014142.01.T01 | MTR_2g066010 | 37.342 | 158 | 87 | 5 | 3 | 158 | 14 | 161 | 8.35e-24 | 92.4 |
| MsG0380014142.01.T01 | MTR_2g065720 | 37.342 | 158 | 87 | 5 | 3 | 158 | 31 | 178 | 4.27e-23 | 90.9 |
| MsG0380014142.01.T01 | MTR_2g018980 | 32.895 | 152 | 87 | 3 | 9 | 159 | 3 | 140 | 1.53e-21 | 85.1 |
| MsG0380014142.01.T01 | MTR_4g032540 | 60.317 | 63 | 24 | 1 | 93 | 154 | 70 | 132 | 1.65e-21 | 84.7 |
| MsG0380014142.01.T01 | MTR_5g096950 | 36.250 | 160 | 82 | 5 | 1 | 158 | 1 | 142 | 7.11e-20 | 80.9 |
| MsG0380014142.01.T01 | MTR_8g007195 | 33.803 | 142 | 80 | 4 | 11 | 146 | 13 | 146 | 1.02e-17 | 78.6 |
| MsG0380014142.01.T01 | MTR_6g053620 | 32.903 | 155 | 90 | 4 | 1 | 149 | 9 | 155 | 2.57e-17 | 77.8 |
| MsG0380014142.01.T01 | MTR_6g053620 | 32.903 | 155 | 90 | 4 | 1 | 149 | 9 | 155 | 3.91e-17 | 77.4 |
| MsG0380014142.01.T01 | MTR_2g100830 | 31.126 | 151 | 88 | 4 | 6 | 149 | 8 | 149 | 4.33e-17 | 76.6 |
| MsG0380014142.01.T01 | MTR_5g078680 | 31.410 | 156 | 67 | 4 | 11 | 149 | 3 | 135 | 9.84e-17 | 75.1 |
| MsG0380014142.01.T01 | MTR_2g100825 | 30.667 | 150 | 91 | 3 | 5 | 149 | 7 | 148 | 1.92e-16 | 75.1 |
| MsG0380014142.01.T01 | MTR_1g042510 | 31.013 | 158 | 69 | 4 | 9 | 149 | 1 | 135 | 3.39e-16 | 73.9 |
| MsG0380014142.01.T01 | MTR_1g112570 | 35.461 | 141 | 64 | 6 | 9 | 131 | 1 | 132 | 3.42e-16 | 73.9 |
| MsG0380014142.01.T01 | MTR_8g007185 | 29.252 | 147 | 89 | 4 | 11 | 150 | 13 | 151 | 2.84e-15 | 71.6 |
| MsG0380014142.01.T01 | MTR_8g007205 | 29.252 | 147 | 89 | 4 | 11 | 150 | 13 | 151 | 4.99e-15 | 70.9 |
| MsG0380014142.01.T01 | MTR_8g030670 | 33.333 | 102 | 61 | 1 | 48 | 149 | 62 | 156 | 1.17e-14 | 70.5 |
| MsG0380014142.01.T01 | MTR_7g077810 | 30.464 | 151 | 89 | 4 | 6 | 149 | 15 | 156 | 1.94e-14 | 69.7 |
| MsG0380014142.01.T01 | MTR_7g036780 | 29.167 | 144 | 88 | 3 | 1 | 138 | 1 | 136 | 1.09e-12 | 63.9 |
| MsG0380014142.01.T01 | MTR_3g061700 | 32.990 | 97 | 56 | 2 | 54 | 149 | 1 | 89 | 5.02e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014142.01.T01 | AT1G20140 | 70.000 | 160 | 43 | 1 | 5 | 159 | 4 | 163 | 3.36e-78 | 229 |
| MsG0380014142.01.T01 | AT2G25700 | 67.901 | 162 | 43 | 2 | 5 | 159 | 4 | 163 | 1.84e-74 | 220 |
| MsG0380014142.01.T01 | AT1G75950 | 71.069 | 159 | 42 | 1 | 5 | 159 | 2 | 160 | 2.24e-73 | 217 |
| MsG0380014142.01.T01 | AT5G42190 | 65.294 | 170 | 45 | 1 | 4 | 159 | 2 | 171 | 1.24e-70 | 211 |
| MsG0380014142.01.T01 | AT4G34210 | 64.516 | 155 | 51 | 1 | 5 | 159 | 2 | 152 | 3.68e-70 | 209 |
| MsG0380014142.01.T01 | AT4G34470 | 62.581 | 155 | 54 | 1 | 5 | 159 | 2 | 152 | 1.93e-67 | 202 |
| MsG0380014142.01.T01 | AT3G60010 | 61.290 | 155 | 55 | 2 | 7 | 159 | 3 | 154 | 7.56e-63 | 190 |
| MsG0380014142.01.T01 | AT2G03170 | 59.211 | 152 | 53 | 4 | 9 | 159 | 6 | 149 | 5.11e-58 | 178 |
| MsG0380014142.01.T01 | AT2G03190 | 54.938 | 162 | 62 | 2 | 9 | 159 | 6 | 167 | 2.91e-57 | 177 |
| MsG0380014142.01.T01 | AT3G21860 | 57.692 | 156 | 61 | 2 | 4 | 159 | 2 | 152 | 3.16e-57 | 176 |
| MsG0380014142.01.T01 | AT3G21850 | 56.688 | 157 | 62 | 3 | 4 | 159 | 2 | 153 | 7.10e-57 | 175 |
| MsG0380014142.01.T01 | AT2G03160 | 48.148 | 189 | 64 | 4 | 5 | 159 | 2 | 190 | 8.86e-52 | 164 |
| MsG0380014142.01.T01 | AT3G25650 | 56.173 | 162 | 60 | 4 | 9 | 159 | 6 | 167 | 1.24e-51 | 162 |
| MsG0380014142.01.T01 | AT3G60020 | 52.229 | 157 | 61 | 4 | 9 | 159 | 5 | 153 | 6.03e-51 | 160 |
| MsG0380014142.01.T01 | AT2G20160 | 53.548 | 155 | 64 | 2 | 5 | 158 | 2 | 149 | 9.18e-51 | 159 |
| MsG0380014142.01.T01 | AT1G10230 | 54.305 | 151 | 68 | 1 | 9 | 158 | 6 | 156 | 4.72e-49 | 155 |
| MsG0380014142.01.T01 | AT3G21830 | 51.923 | 156 | 70 | 2 | 4 | 159 | 2 | 152 | 8.23e-49 | 155 |
| MsG0380014142.01.T01 | AT3G21840 | 50.413 | 121 | 55 | 2 | 4 | 124 | 2 | 117 | 6.85e-30 | 105 |
| MsG0380014142.01.T01 | AT3G53060 | 59.302 | 86 | 26 | 3 | 32 | 116 | 3 | 80 | 3.94e-25 | 92.8 |
| MsG0380014142.01.T01 | AT2G45950 | 31.788 | 151 | 91 | 4 | 4 | 149 | 13 | 156 | 1.28e-16 | 75.9 |
| MsG0380014142.01.T01 | AT2G45950 | 31.788 | 151 | 91 | 4 | 4 | 149 | 13 | 156 | 1.28e-16 | 75.9 |
| MsG0380014142.01.T01 | AT2G45950 | 31.788 | 151 | 91 | 4 | 4 | 149 | 13 | 156 | 1.47e-16 | 75.5 |
| MsG0380014142.01.T01 | AT2G45950 | 31.788 | 151 | 91 | 4 | 4 | 149 | 13 | 156 | 1.47e-16 | 75.5 |
| MsG0380014142.01.T01 | AT2G45950 | 31.788 | 151 | 91 | 4 | 4 | 149 | 13 | 156 | 1.47e-16 | 75.5 |
| MsG0380014142.01.T01 | AT3G61415 | 32.000 | 150 | 88 | 4 | 6 | 149 | 15 | 156 | 5.44e-16 | 73.9 |
| MsG0380014142.01.T01 | AT3G61415 | 32.000 | 150 | 88 | 4 | 6 | 149 | 15 | 156 | 6.08e-16 | 73.9 |
Find 45 sgRNAs with CRISPR-Local
Find 42 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAGGGTGATCATCTTCT+TGG | 0.232916 | 3:+50307066 | None:intergenic |
| CAGACGATTATCTTAAGAAT+TGG | 0.277347 | 3:-50306847 | MsG0380014142.01.T01:CDS |
| TTTCACCGTCGAAACTCTTC+AGG | 0.296550 | 3:+50307050 | None:intergenic |
| TACCTTCGCTAACATCTTGC+CGG | 0.364565 | 3:+50306928 | None:intergenic |
| AGACGATTATCTTAAGAATT+GGG | 0.405999 | 3:-50306846 | MsG0380014142.01.T01:CDS |
| ATCCCGGTTCAGAACGTTAC+CGG | 0.408425 | 3:-50306947 | MsG0380014142.01.T01:CDS |
| CTGAACCGGGATTGCGTTGT+CGG | 0.412527 | 3:+50306958 | None:intergenic |
| CATCCTTGCTGCAAACTACT+TGG | 0.414458 | 3:-50306780 | MsG0380014142.01.T01:CDS |
| CGAACTTCTTCCTCTTCCTC+CGG | 0.424372 | 3:+50306650 | None:intergenic |
| TTGCCGGTAACGTTCTGAAC+CGG | 0.428419 | 3:+50306944 | None:intergenic |
| CTTTGAGGTTTCCGAGGCTG+TGG | 0.449264 | 3:-50307026 | MsG0380014142.01.T01:CDS |
| AACATGTTGCGAACTTCCTC+GGG | 0.452049 | 3:+50306695 | None:intergenic |
| TGCCGGTAACGTTCTGAACC+GGG | 0.453203 | 3:+50306945 | None:intergenic |
| CTTGGATATCAAGAGTCTAC+TGG | 0.463162 | 3:-50306762 | MsG0380014142.01.T01:CDS |
| AAACATGTTGCGAACTTCCT+CGG | 0.463765 | 3:+50306694 | None:intergenic |
| TCATCATGTCCGCCGCAGAC+TGG | 0.476717 | 3:+50306729 | None:intergenic |
| TGATTACACTCCGGAGGAAG+AGG | 0.478345 | 3:-50306660 | MsG0380014142.01.T01:CDS |
| CATGTCCGCCGCAGACTGGC+AGG | 0.488091 | 3:+50306733 | None:intergenic |
| CTTCTTGGTTGTTGAAGACA+TGG | 0.497969 | 3:+50307081 | None:intergenic |
| TTTCGACGGTGAAACCTTTG+AGG | 0.503637 | 3:-50307041 | MsG0380014142.01.T01:CDS |
| AGATAATCGTCTGATTCTGA+AGG | 0.529717 | 3:+50306857 | None:intergenic |
| TTAATTCATTCAAATGCCCA+TGG | 0.538461 | 3:+50306617 | None:intergenic |
| TGATTCGAGCGCCACAGCCT+CGG | 0.547036 | 3:+50307015 | None:intergenic |
| TTGTGCCGACAACGCAATCC+CGG | 0.550445 | 3:-50306963 | MsG0380014142.01.T01:CDS |
| TTCACCGTCGAAACTCTTCA+GGG | 0.553987 | 3:+50307051 | None:intergenic |
| GGAAGAGGAAGAAGTTCGAA+AGG | 0.564146 | 3:-50306645 | MsG0380014142.01.T01:CDS |
| CACAGCCTCGGAAACCTCAA+AGG | 0.593672 | 3:+50307027 | None:intergenic |
| TGATTTCGTGAAGGTTGAGA+AGG | 0.594910 | 3:-50306819 | MsG0380014142.01.T01:CDS |
| TAATTCATTCAAATGCCCAT+GGG | 0.599690 | 3:+50306618 | None:intergenic |
| TCTTACCTGCCAGTCTGCGG+CGG | 0.607285 | 3:-50306738 | MsG0380014142.01.T01:CDS |
| ATCACCCTGAAGAGTTTCGA+CGG | 0.609201 | 3:-50307055 | MsG0380014142.01.T01:CDS |
| AAGTTCGAAAGGAAAACCCA+TGG | 0.609330 | 3:-50306634 | MsG0380014142.01.T01:CDS |
| TGAAACCTTTGAGGTTTCCG+AGG | 0.612551 | 3:-50307032 | MsG0380014142.01.T01:CDS |
| GACAATCAAGCACATGATCG+AGG | 0.614315 | 3:-50306990 | MsG0380014142.01.T01:CDS |
| TCTGCGGCGGACATGATGAA+AGG | 0.628481 | 3:-50306725 | MsG0380014142.01.T01:CDS |
| CTGCAAGAAGCACGTCGAGG+TGG | 0.646155 | 3:-50306897 | MsG0380014142.01.T01:CDS |
| GGATCTTACCTGCCAGTCTG+CGG | 0.652693 | 3:-50306741 | MsG0380014142.01.T01:CDS |
| TACCGGCAAGATGTTAGCGA+AGG | 0.658951 | 3:-50306930 | MsG0380014142.01.T01:CDS |
| TATCCAAGTAGTTTGCAGCA+AGG | 0.660134 | 3:+50306777 | None:intergenic |
| AGTTCGAAAGGAAAACCCAT+GGG | 0.663178 | 3:-50306633 | MsG0380014142.01.T01:CDS |
| TTGGGATGCTGATTTCGTGA+AGG | 0.669657 | 3:-50306828 | MsG0380014142.01.T01:CDS |
| CAAGAATGATTACACTCCGG+AGG | 0.672447 | 3:-50306666 | MsG0380014142.01.T01:CDS |
| CATCAAGAATGATTACACTC+CGG | 0.688170 | 3:-50306669 | MsG0380014142.01.T01:CDS |
| GATGAAAGGAAAGACACCCG+AGG | 0.735218 | 3:-50306711 | MsG0380014142.01.T01:CDS |
| ATACTGCAAGAAGCACGTCG+AGG | 0.756219 | 3:-50306900 | MsG0380014142.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGACGATTATCTTAAGAATT+GGG | - | Chr3:50306855-50306874 | MsG0380014142.01.T01:CDS | 25.0% |
| CAGACGATTATCTTAAGAAT+TGG | - | Chr3:50306854-50306873 | MsG0380014142.01.T01:CDS | 30.0% | |
| AGATAATCGTCTGATTCTGA+AGG | + | Chr3:50306847-50306866 | None:intergenic | 35.0% | |
| CATCAAGAATGATTACACTC+CGG | - | Chr3:50307032-50307051 | MsG0380014142.01.T01:CDS | 35.0% | |
| AAACATGTTGCGAACTTCCT+CGG | + | Chr3:50307010-50307029 | None:intergenic | 40.0% | |
| AAGTTCGAAAGGAAAACCCA+TGG | - | Chr3:50307067-50307086 | MsG0380014142.01.T01:CDS | 40.0% | |
| AGTTCGAAAGGAAAACCCAT+GGG | - | Chr3:50307068-50307087 | MsG0380014142.01.T01:CDS | 40.0% | |
| CTTGGATATCAAGAGTCTAC+TGG | - | Chr3:50306939-50306958 | MsG0380014142.01.T01:CDS | 40.0% | |
| TGATTTCGTGAAGGTTGAGA+AGG | - | Chr3:50306882-50306901 | MsG0380014142.01.T01:CDS | 40.0% | |
| ! | TATCCAAGTAGTTTGCAGCA+AGG | + | Chr3:50306927-50306946 | None:intergenic | 40.0% |
| AACATGTTGCGAACTTCCTC+GGG | + | Chr3:50307009-50307028 | None:intergenic | 45.0% | |
| ATCACCCTGAAGAGTTTCGA+CGG | - | Chr3:50306646-50306665 | MsG0380014142.01.T01:CDS | 45.0% | |
| CAAGAATGATTACACTCCGG+AGG | - | Chr3:50307035-50307054 | MsG0380014142.01.T01:CDS | 45.0% | |
| CATCCTTGCTGCAAACTACT+TGG | - | Chr3:50306921-50306940 | MsG0380014142.01.T01:CDS | 45.0% | |
| CTTCAGGGTGATCATCTTCT+TGG | + | Chr3:50306638-50306657 | None:intergenic | 45.0% | |
| GACAATCAAGCACATGATCG+AGG | - | Chr3:50306711-50306730 | MsG0380014142.01.T01:CDS | 45.0% | |
| GGAAGAGGAAGAAGTTCGAA+AGG | - | Chr3:50307056-50307075 | MsG0380014142.01.T01:CDS | 45.0% | |
| TACCTTCGCTAACATCTTGC+CGG | + | Chr3:50306776-50306795 | None:intergenic | 45.0% | |
| TTCACCGTCGAAACTCTTCA+GGG | + | Chr3:50306653-50306672 | None:intergenic | 45.0% | |
| TTTCACCGTCGAAACTCTTC+AGG | + | Chr3:50306654-50306673 | None:intergenic | 45.0% | |
| TTTCGACGGTGAAACCTTTG+AGG | - | Chr3:50306660-50306679 | MsG0380014142.01.T01:CDS | 45.0% | |
| !! | TGAAACCTTTGAGGTTTCCG+AGG | - | Chr3:50306669-50306688 | MsG0380014142.01.T01:CDS | 45.0% |
| !! | TTGGGATGCTGATTTCGTGA+AGG | - | Chr3:50306873-50306892 | MsG0380014142.01.T01:CDS | 45.0% |
| ATCCCGGTTCAGAACGTTAC+CGG | - | Chr3:50306754-50306773 | MsG0380014142.01.T01:CDS | 50.0% | |
| CGAACTTCTTCCTCTTCCTC+CGG | + | Chr3:50307054-50307073 | None:intergenic | 50.0% | |
| GATGAAAGGAAAGACACCCG+AGG | - | Chr3:50306990-50307009 | MsG0380014142.01.T01:CDS | 50.0% | |
| TACCGGCAAGATGTTAGCGA+AGG | - | Chr3:50306771-50306790 | MsG0380014142.01.T01:CDS | 50.0% | |
| TGATTACACTCCGGAGGAAG+AGG | - | Chr3:50307041-50307060 | MsG0380014142.01.T01:CDS | 50.0% | |
| ! | ATACTGCAAGAAGCACGTCG+AGG | - | Chr3:50306801-50306820 | MsG0380014142.01.T01:CDS | 50.0% |
| ! | TTGCCGGTAACGTTCTGAAC+CGG | + | Chr3:50306760-50306779 | None:intergenic | 50.0% |
| CACAGCCTCGGAAACCTCAA+AGG | + | Chr3:50306677-50306696 | None:intergenic | 55.0% | |
| CTGAACCGGGATTGCGTTGT+CGG | + | Chr3:50306746-50306765 | None:intergenic | 55.0% | |
| GGATCTTACCTGCCAGTCTG+CGG | - | Chr3:50306960-50306979 | MsG0380014142.01.T01:CDS | 55.0% | |
| TCTGCGGCGGACATGATGAA+AGG | - | Chr3:50306976-50306995 | MsG0380014142.01.T01:CDS | 55.0% | |
| ! | TGCCGGTAACGTTCTGAACC+GGG | + | Chr3:50306759-50306778 | None:intergenic | 55.0% |
| ! | TTGTGCCGACAACGCAATCC+CGG | - | Chr3:50306738-50306757 | MsG0380014142.01.T01:CDS | 55.0% |
| !! | CTTTGAGGTTTCCGAGGCTG+TGG | - | Chr3:50306675-50306694 | MsG0380014142.01.T01:CDS | 55.0% |
| TCATCATGTCCGCCGCAGAC+TGG | + | Chr3:50306975-50306994 | None:intergenic | 60.0% | |
| TCTTACCTGCCAGTCTGCGG+CGG | - | Chr3:50306963-50306982 | MsG0380014142.01.T01:CDS | 60.0% | |
| TGATTCGAGCGCCACAGCCT+CGG | + | Chr3:50306689-50306708 | None:intergenic | 60.0% | |
| ! | CTGCAAGAAGCACGTCGAGG+TGG | - | Chr3:50306804-50306823 | MsG0380014142.01.T01:CDS | 60.0% |
| CATGTCCGCCGCAGACTGGC+AGG | + | Chr3:50306971-50306990 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 50306622 | 50307101 | 50306622 | ID=MsG0380014142.01;Name=MsG0380014142.01 |
| Chr3 | mRNA | 50306622 | 50307101 | 50306622 | ID=MsG0380014142.01.T01;Parent=MsG0380014142.01;Name=MsG0380014142.01.T01;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|159 |
| Chr3 | exon | 50306622 | 50307101 | 50306622 | ID=MsG0380014142.01.T01:exon:9694;Parent=MsG0380014142.01.T01 |
| Chr3 | CDS | 50306622 | 50307101 | 50306622 | ID=MsG0380014142.01.T01:cds;Parent=MsG0380014142.01.T01 |
| Gene Sequence |
| Protein sequence |
